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Homologs of hrcQa gene of AF232004

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrcQa
( NP_791224.1 )

type III secretion protein HrcQa

NC_004578
(Pseudomonas syringae DC3000)

1e-95

2) hrcQa
( YP_273546.1 )

type III secretion component protein HrcQa

NC_005773
(Pseudomonas syringae 1448A)

3e-68

3) Psyr_1210
( YP_234302.1 )

type III secretion protein HrcQa

NC_007005
(Pseudomonas syringae B728a)

1e-61

4) Pmen_0044
( YP_001185550.1 )

hypothetical protein

NC_009439
(Pseudomonas mendocina ymp)

3e-47

• Sequence Alignments

1) hrcQa in NC_004578


> AF232004|16|G15|11276514|AAG33882.1|Pseudomonas_syringae_pv._tomato_DC3000|+|17948..18664|hrcQa|-|HrcQa
Length=238

 Score =  341 bits (1281),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 221/222 (99%), Positives = 221/222 (99%), Gaps = 0/222 (0%)

Query  1    MSALCLRKVDPLLAKVSRELGAGQCLSFSAKGQQAELTLLPLIASDETPAKGVWLNTAVG  60
            MSALCLRKVDPLLAKVSRELGAGQCLSFSAKGQQ ELTLLPLIASDETPAKGVWLNTAVG
Sbjct  1    MSALCLRKVDPLLAKVSRELGAGQCLSFSAKGQQQELTLLPLIASDETPAKGVWLNTAVG  60

Query  61   ALCLSDAEALLSLLGDIPLTLGGEQQAWYWQFFNQRLSPTIADLLAPVEPLPQACAELTV  120
            ALCLSDAEALLSLLGDIPLTLGGEQQAWYWQFFNQRLSPTIADLLAPVEPLPQACAELTV
Sbjct  61   ALCLSDAEALLSLLGDIPLTLGGEQQAWYWQFFNQRLSPTIADLLAPVEPLPQACAELTV  120

Query  121  GCRIQVRLADQQVHAHLHATPETLLTLLRSAAWQARLKPLDERWSISTPLILGELSLTLE  180
            GCRIQVRLADQQVHAHLHATPETLLTLLRSAAWQARLKPLDERWSISTPLILGELSLTLE
Sbjct  121  GCRIQVRLADQQVHAHLHATPETLLTLLRSAAWQARLKPLDERWSISTPLILGELSLTLE  180

Query  181  QLASLRPGDVLLPANCKFDSAGQGFLTLAGRQWAAQTDSQDQ  222
            QLASLRPGDVLLPANCKFDSAGQGFLTLAGRQWAAQTDSQDQ
Sbjct  181  QLASLRPGDVLLPANCKFDSAGQGFLTLAGRQWAAQTDSQDQ  222

2) hrcQa in NC_005773


> AF232004|16|G15|11276514|AAG33882.1|Pseudomonas_syringae_pv._tomato_DC3000|+|17948..18664|hrcQa|-|HrcQa
Length=238

 Score =  251 bits (936),  Expect = 3e-68, Method: Compositional matrix adjust.
 Identities = 160/222 (73%), Positives = 196/222 (89%), Gaps = 0/222 (0%)

Query  1    MSALRLRKVDALLAQATRELGAGQSLGFSAAGQDAELTLLPLLADAGEPAGAVWLSTAIG  60
            MSAL LRKVD+LLA+ +RELGAGQ L+FSA GQ+ ELTLLPL+A    PA +VWL+TA+G
Sbjct  1    MSALCLRKVDPLLAKVSRELGAGQCLSFSAKGQQQELTLLPLIASDETPAKGVWLNTAVG  60

Query  61   PlllsdaeallsllGDIPLTLGGEQQAWYWQLFNQRLSPTVARLLAPVEPLHNKPQAPTL  120
            +L LSDAEALLSLLGDIPLTLGGEQQAWYWQ+FNQRLSPT+A LLAPVEPL +     T+
Sbjct  61   ALCLSDAEALLSLLGDIPLTLGGEQQAWYWQFFNQRLSPTIADLLAPVEPLPQACAELTV  120

Query  121  GCRVQIRRGGEQLHAHMHATPDTLLRLLRSASWQARTRTVDESWSVASPLIIGEMSLTRE  180
            GCR+Q+R +++Q+HAH+HATP+TLL LLRSA+WQAR + +DE WS+++PLI+GE+SLT E
Sbjct  121  GCRIQVRLADQQVHAHLHATPETLLTLLRSAAWQARLKPLDERWSISTPLILGELSLTLE  180

Query  181  QIASLRPGDVVLPAHCQFDSAGQGFLSLAGRQWAAQTDQHAQ  222
            Q+ASLRPGDV+LPA+C+FDSAGQGFL+LAGRQWAAQTD + Q
Sbjct  181  QLASLRPGDVLLPANCKFDSAGQGFLTLAGRQWAAQTDSQDQ  222

3) Psyr_1210 in NC_007005


> AF232004|16|G15|11276514|AAG33882.1|Pseudomonas_syringae_pv._tomato_DC3000|+|17948..18664|hrcQa|-|HrcQa
Length=238

 Score =  229 bits (852),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 148/221 (67%), Positives = 189/221 (86%), Gaps = 0/221 (0%)

Query  1    MSALRLRKVDALLAQATRALGAGRRLGFSTRGQHAELSLLPQLEDARIPADGVWLNTAVG  60
            MSAL LRKVD+LLA+ +R LGAG+ L+FS++GQ+ EL+LLP +     PA GVWLNTAVG
Sbjct  1    MSALCLRKVDPLLAKVSRELGAGQCLSFSAKGQQQELTLLPLIASDETPAKGVWLNTAVG  60

Query  61   PlllsdaeallsllGEIPFSLGGEHQAWYWQLFNQRLSPVIADLLAPVAPFSDAPTEPAI  120
            +L LSDAEALLSLLG+IP++LGGE+QAWYWQ+FNQRLSP IADLLAPV P+++A +E ++
Sbjct  61   ALCLSDAEALLSLLGDIPLTLGGEQQAWYWQFFNQRLSPTIADLLAPVEPLPQACAELTV  120

Query  121  GCRVHVRLGSERLDAHLHAAPATLLRLLGSADWQVLKRDVDQSWSVATPLIVGELSLTLE  180
            GCR++VRL+ ++++AHLHA+P TLL LL SA WQ   + +D+ WS++TPLI+GELSLTLE
Sbjct  121  GCRIQVRLADQQVHAHLHATPETLLTLLRSAAWQARLKPLDERWSISTPLILGELSLTLE  180

Query  181  QIAALRPGDVVLPARCRFDSAGQGTVTLAGRQWAACTDQQA  221
            Q+A+LRPGDV+LPA C+FDSAGQG +TLAGRQWAA TD Q 
Sbjct  181  QLASLRPGDVLLPANCKFDSAGQGFLTLAGRQWAAQTDSQD  221

4) Pmen_0044 in NC_009439


> AF232004|16|G15|11276514|AAG33882.1|Pseudomonas_syringae_pv._tomato_DC3000|+|17948..18664|hrcQa|-|HrcQa
Length=238

 Score =  181 bits (669),  Expect = 3e-47, Method: Compositional matrix adjust.
 Identities = 112/239 (47%), Positives = 174/239 (73%), Gaps = 2/239 (0%)

Query  1    MTPLALGAISSVLAQASRALGAGVTLNFRARGHDGELKLLPMLPNAPSRA-GTWLHTNVG  59
            M++L L  + ++LA+ SR LGAG  L+F A+G++ EL LLP++++  + A G WL+T VG
Sbjct  1    MSALCLRKVDPLLAKVSRELGAGQCLSFSAKGQQQELTLLPLIASDETPAKGVWLNTAVG  60

Query  60   PLCLGDAGAVLSLLGELPVTCEGDDQPWYWQLISQRLSQGVAGALGAISPLDGDAPAGAL  119
            +LCL+DA A+LSLLG++P+T  G++Q+WYWQ+++QRLS  +A+ L+++ PL  +A A   
Sbjct  61   ALCLSDAEALLSLLGDIPLTLGGEQQAWYWQFFNQRLSPTIADLLAPVEPL-PQACAELT  119

Query  120  LHAQLHVRLGDERVQAQLAAPPETWLNWLQAPEWQRIRTALHEALVLHIPLQLGQLELSA  179
            +  +++VRL+D++V+A+L A PET L  L+++ WQ    +L+E   +  PL LG+L L+ 
Sbjct  120  VGCRIQVRLADQQVHAHLHATPETLLTLLRSAAWQARLKPLDERWSISTPLILGELSLTL  179

Query  180  EQLASLQPGDIVLPAQASFTCDGSGHLALASRYWAAQVSSRGEKLFLNLRHEESSQHEH  238
            EQLASL+PGD++LPA+  F   G G L+LA+R WAAQ  S+++ L+L L HEE S+HE 
Sbjct  180  EQLASLRPGDVLLPANCKFDSAGQGFLTLAGRQWAAQTDSQDQHLLLRLSHEEHSHHEY  238