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Homologs of prfA gene of AJ494981

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) ECP_4541
( YP_672378.1 )

protein PapA

NC_008253
(Escherichia coli 536)

6e-75

100

2) papA
( NP_755467.1 )

PapA protein

NC_004431
(Escherichia coli CFT073)

6e-61

3) papA_2
( NP_757036.1 )

PapA protein

NC_004431
(Escherichia coli CFT073)

7e-60

4) papA
( YP_002414017.1 )

P-fimbriae major subunit

NC_011751
(Escherichia coli UMN026)

5e-59

5) papA
( YP_006108764.1 )

major pilin subunit PapA

NC_017631
(Escherichia coli ABU 83972)

3e-58

6) papA
( YP_006141782.1 )

PapA protein

NC_017644
(Escherichia coli NA114)

9e-57

7) papA
( YP_854256.1 )

major fibrial protein

NC_008563
(Escherichia coli APEC O1)

2e-44

8) papA
( YP_002392884.1 )

major pilin protein PapA

NC_011742
(Escherichia coli S88)

2e-44

9) papA2
( YP_006146816.1 )

major pilin protein PapA

NC_017646
(Escherichia coli CE10)

1e-43

10) UM146_21685
( YP_006113177.1 )

major pilin protein PapA

NC_017632
(Escherichia coli UM146)

3e-41

11) papA
( YP_543829.1 )

major pilin subunit PapA

NC_007946
(Escherichia coli UTI89)

3e-41

12) papA
( YP_002410451.1 )

major pilin protein PapA

NC_011750
(Escherichia coli IAI39)

4e-41

13) papA1
( YP_006145442.1 )

major pilin subunit PapA

NC_017646
(Escherichia coli CE10)

3e-37

14) ECP_2972
( YP_670856.1 )

PixA protein

NC_008253
(Escherichia coli 536)

3e-33

15) ETAC_10690
( YP_007629619.1 )

P pilus assembly protein, pilin FimA

NC_020796
(Edwardsiella tarda C07-087)

5e-27

16) fimA
( YP_005699638.1 )

P pilus assembly protein, pilin FimA

NC_017309
(Edwardsiella tarda FL6-60)

7e-27

17) ETAE_2255
( YP_003296301.1 )

P pilus assembly protein, pilin FimA

NC_013508
(Edwardsiella tarda EIB202)

9e-27

18) pmpA
( YP_008398881.1 )

fimbrial subunit

NC_022000
(Proteus mirabilis BB2000)

1e-25

19) pmpA
( YP_002151941.1 )

fimbrial subunit

NC_010554
(Proteus mirabilis HI4320)

1e-25

• Sequence Alignments

1) ECP_4541 in NC_008253


> AJ494981|16|G15|23954234|CAD42031.1|Escherichia_coli_536|-|18430..19014|prfA|-|PrfA 
protein
Length=194

 Score =  272 bits (1019),  Expect = 6e-75, Method: Compositional matrix adjust.
 Identities = 194/194 (100%), Positives = 194/194 (100%), Gaps = 0/194 (0%)

Query  12   MIKSVIAGAVAMAVVSFGVNAAATVPQGQGKVTFSGTVVDAPCGIDAQSADQSVDFGQIS  71
            MIKSVIAGAVAMAVVSFGVNAAATVPQGQGKVTFSGTVVDAPCGIDAQSADQSVDFGQIS
Sbjct  1    MIKSVIAGAVAMAVVSFGVNAAATVPQGQGKVTFSGTVVDAPCGIDAQSADQSVDFGQIS  60

Query  72   KVFLDNDGQTTPKAFDIKLVNCDITNYkkpatgaapggapkagtVSMTFSGVTAGAGNAN  131
            KVFLDNDGQTTPKAFDIKLVNCDITNYKKPATGAAPGGAPKAGTVSMTFSGVTAGAGNAN
Sbjct  61   KVFLDNDGQTTPKAFDIKLVNCDITNYKKPATGAAPGGAPKAGTVSMTFSGVTAGAGNAN  120

Query  132  DMLQTNGETNTAIVVIDPHGKRVKFDGRTSTGVSNLINGDNTIHFTAAVMKDGSGNHVKE  191
            DMLQTNGETNTAIVVIDPHGKRVKFDGRTSTGVSNLINGDNTIHFTAAVMKDGSGNHVKE
Sbjct  121  DMLQTNGETNTAIVVIDPHGKRVKFDGRTSTGVSNLINGDNTIHFTAAVMKDGSGNHVKE  180

Query  192  GAFSAVANFNLTYQ  205
            GAFSAVANFNLTYQ
Sbjct  181  GAFSAVANFNLTYQ  194

2) papA in NC_004431


> AJ494981|16|G15|23954234|CAD42031.1|Escherichia_coli_536|-|18430..19014|prfA|-|PrfA 
protein
Length=194

 Score =  226 bits (842),  Expect = 6e-61, Method: Compositional matrix adjust.
 Identities = 150/194 (78%), Positives = 172/194 (89%), Gaps = 6/194 (3%)

Query  12   MIKSVIAGAVAMAVVSFGAYAAPTIPQGQGKVTFNGTVVDAPCGIDAQSADQSIDFGQVS  71
            MIKSVIAGAVAMAVVSFG  AA+T+PQGQGKVTF+GTVVDAPCGIDAQSADQS+DFGQ+S
Sbjct  1    MIKSVIAGAVAMAVVSFGVNAAATVPQGQGKVTFSGTVVDAPCGIDAQSADQSVDFGQIS  60

Query  72   KLFLENDGESQPKSFDIKLINCDITNF----kkaaggggaktgtVSLTFSGVPSGP--QS  125
            K+FL+NDG++ PK+FDIKL+NCDITN+      AA GG++K+GTVS+TFSGV +G+   +
Sbjct  61   KVFLDNDGQTTPKAFDIKLVNCDITNYKKPATGAAPGGAPKAGTVSMTFSGVTAGAGNAN  120

Query  126  DMLQTVGATNTAIVVTDPHGKRVKFDGATATGVSYLVDGDNTIHFTAAVRKDGSGNPVTE  185
            DMLQT G TNTAIVV DPHGKRVKFDG T+TGVS L++GDNTIHFTAAV KDGSGN V E
Sbjct  121  DMLQTNGETNTAIVVIDPHGKRVKFDGRTSTGVSNLINGDNTIHFTAAVMKDGSGNHVKE  180

Query  186  GAFSAVANFNLTYQ  199
            GAFSAVANFNLTYQ
Sbjct  181  GAFSAVANFNLTYQ  194

3) papA_2 in NC_004431


> AJ494981|16|G15|23954234|CAD42031.1|Escherichia_coli_536|-|18430..19014|prfA|-|PrfA 
protein
Length=194

 Score =  222 bits (828),  Expect = 7e-60, Method: Compositional matrix adjust.
 Identities = 143/194 (74%), Positives = 164/194 (85%), Gaps = 7/194 (3%)

Query  12   MIKSVIAGAVAMAVVSFGANAAASIPQGQGEVSFKGTVVDAPCGIETQSAKQEIDFGQIS  71
            MIKSVIAGAVAMAVVSFG NAAA++PQGQG V+F GTVVDAPCGI++QSA Q +DFGQIS
Sbjct  1    MIKSVIAGAVAMAVVSFGVNAAATVPQGQGKVTFSGTVVDAPCGIDAQSADQSVDFGQIS  60

Query  72   KSFLQEGGETQPKDLNIKLVNCDITNFKQ-----LQGGAAKKGTVSLTFSGVP--AENAD  124
            K FL+++G+T PK ++IKLVNCDITN+K+       GGA+K GTVS+TFSGV   A NA+
Sbjct  61   KVFLDNDGQTTPKAFDIKLVNCDITNYKKPATGAAPGGAPKAGTVSMTFSGVTAGAGNAN  120

Query  125  DMLQTVGDTNTAIVVTDSSGKRVKFDGATETGASNLINGDNTIHFTAFVKKDNSGKNVAE  184
            DMLQT G+TNTAIVV D+ GKRVKFDG T TG SNLINGDNTIHFTA V KD SG++V E
Sbjct  121  DMLQTNGETNTAIVVIDPHGKRVKFDGRTSTGVSNLINGDNTIHFTAAVMKDGSGNHVKE  180

Query  185  GAFSAVANFNLTYQ  198
            GAFSAVANFNLTYQ
Sbjct  181  GAFSAVANFNLTYQ  194

4) papA in NC_011751


> AJ494981|16|G15|23954234|CAD42031.1|Escherichia_coli_536|-|18430..19014|prfA|-|PrfA 
protein
Length=194

 Score =  219 bits (817),  Expect = 5e-59, Method: Compositional matrix adjust.
 Identities = 143/194 (74%), Positives = 163/194 (85%), Gaps = 16/194 (8%)

Query  1    MIKSVIAGAAAMAVVSFGANAA---PQGQGKVTFNGTVVDAPCGIDAQSADQSIDFGQVS  57
            MIKSVIAGA AMAVVSFG NAA   PQGQGKVTF+GTVVDAPCGIDAQSADQS+DFGQ+S
Sbjct  1    MIKSVIAGAVAMAVVSFGVNAAATVPQGQGKVTFSGTVVDAPCGIDAQSADQSVDFGQIS  60

Query  58   KVLLNNGGTSTPKSFDIKLTDCDITNYK---------AGNKAGTVSLTFSGVQAGT----  104
            KV+L+N+G +TPK+FDIKL +CDITNYK         ++ KAGTVS+TFSGV AG+    
Sbjct  61   KVFLDNDGQTTPKAFDIKLVNCDITNYKKPATGAAPGGAPKAGTVSMTFSGVTAGAGNAN  120

Query  105  DMLQTVGSTNTAILITDPHGKAVKFDGATATGVSSLVDGDNTIHFTALVKKDTSGNDVAE  164
            DMLQT G TNTAI++ DPHGK VKFDG T+TGVS+L++GDNTIHFTA V KD SGN+V E
Sbjct  121  DMLQTNGETNTAIVVIDPHGKRVKFDGRTSTGVSNLINGDNTIHFTAAVMKDGSGNHVKE  180

Query  165  GAFSAVANFNLTYQ  178
            GAFSAVANFNLTYQ
Sbjct  181  GAFSAVANFNLTYQ  194

5) papA in NC_017631


> AJ494981|16|G15|23954234|CAD42031.1|Escherichia_coli_536|-|18430..19014|prfA|-|PrfA 
protein
Length=194

 Score =  217 bits (808),  Expect = 3e-58, Method: Compositional matrix adjust.
 Identities = 144/194 (75%), Positives = 169/194 (88%), Gaps = 5/194 (2%)

Query  1    MIKSVIAGAVAMAVVSFGVNAAPTIPQGQGEVTFKGTVVDAPCGIETQSARQEIDFGQIS  60
            MIKSVIAGAVAMAVVSFGVNAA+T+PQGQG VTF GTVVDAPCGI++QSA Q +DFGQIS
Sbjct  1    MIKSVIAGAVAMAVVSFGVNAAATVPQGQGKVTFSGTVVDAPCGIDAQSADQSVDFGQIS  60

Query  61   KSFLQEGGESQPKDLNIKLVNCDITNF---kkapvgggatkagtvaLTFSGVS--SGNNK  115
            K FL+++G++ PK ++IKLVNCDITN+     ++  GGA KAGTV++TFSGV+  +GN +
Sbjct  61   KVFLDNDGQTTPKAFDIKLVNCDITNYKKPATGAAPGGAPKAGTVSMTFSGVTAGAGNAN  120

Query  116  DMLQTVGATNTAIVVVDPHGKRVKFDGATTTGPSNLVDGDNTIHFTAAVRKDDSGNPVTE  175
            DMLQT G TNTAIVV+DPHGKRVKFDG T+TG SNL++GDNTIHFTAAV KD+SGN V E
Sbjct  121  DMLQTNGETNTAIVVIDPHGKRVKFDGRTSTGVSNLINGDNTIHFTAAVMKDGSGNHVKE  180

Query  176  GAFSAVANFNLTYQ  189
            GAFSAVANFNLTYQ
Sbjct  181  GAFSAVANFNLTYQ  194

6) papA in NC_017644


> AJ494981|16|G15|23954234|CAD42031.1|Escherichia_coli_536|-|18430..19014|prfA|-|PrfA 
protein
Length=194

 Score =  212 bits (789),  Expect = 9e-57, Method: Compositional matrix adjust.
 Identities = 143/196 (73%), Positives = 173/196 (89%), Gaps = 7/196 (3%)

Query  8    MIKSVIAGAVAMAVVSFGANAADTVAPSQGSGQVNFKGTVIDAPCGIETQSANQTIDFGQ  67
            MIKSVIAGAVAMAVVSFG NAA TV+  QG G+V F GTV+DAPCGI++QSA+Q++DFGQ
Sbjct  1    MIKSVIAGAVAMAVVSFGVNAAATVP--QGQGKVTFSGTVVDAPCGIDAQSADQSVDFGQ  58

Query  68   ISKLFLENGGTTQPKDLDIKLVNCDITNF---kkaatpggaaktgtVSLTFAGVPAG--N  122
            ISK+FL+N+G T PK +DIKLVNCDITN+     +A+PGGA+K+GTVS+TF+GV AG  N
Sbjct  59   ISKVFLDNDGQTTPKAFDIKLVNCDITNYKKPATGAAPGGAPKAGTVSMTFSGVTAGAGN  118

Query  123  ASDMLKTVGETNTAIVVLNPHGSRVKFDGKTSTGPSNLVDGNNTLHFTTYVMKDDSGNSV  182
            A+DML+T GETNTAIVV++PHG RVKFDG+TSTG SNL++G+NT+HFT+ VMKD+SGN V
Sbjct  119  ANDMLQTNGETNTAIVVIDPHGKRVKFDGRTSTGVSNLINGDNTIHFTAAVMKDGSGNHV  178

Query  183  KEGAFSAVANFNLTYQ  198
            KEGAFSAVANFNLTYQ
Sbjct  179  KEGAFSAVANFNLTYQ  194

7) papA in NC_008563


> AJ494981|16|G15|23954234|CAD42031.1|Escherichia_coli_536|-|18430..19014|prfA|-|PrfA 
protein
Length=194

 Score =  171 bits (634),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 114/194 (59%), Positives = 149/194 (77%), Gaps = 12/194 (6%)

Query  8    MIKSVIAGAVAMAVVSFGVNAAPTIPQGQGKVTFNGTVVDAPCSISQKSADQSIDFGQLS  67
            MIKSVIAGAVAMAVVSFGVNAA+T+PQGQGKVTF+GTVVDAPC+I  +SADQS+DFGQ+S
Sbjct  1    MIKSVIAGAVAMAVVSFGVNAAATVPQGQGKVTFSGTVVDAPCGIDAQSADQSVDFGQIS  60

Query  68   KSFLEAGGTSKPMDLDIELVNCDITAFKQ-------GQAAKNGKVQLSFTG-PQVTGQAE  119
            K FL+ +G + P  +DI LVNCDIT +K+       G A+K G V ++F+G    +G+A+
Sbjct  61   KVFLDNDGQTTPKAFDIKLVNCDITNYKKPATGAAPGGAPKAGTVSMTFSGVTAGAGNAN  120

Query  120  E-LATNGGTGTAIVV-QAAGKNVSFDGTAGDAYP-LKDGDNVLHYT-ALVKKANGGTVSE  175
            + L TNG T TAIVV ++ GK V FDG ++ + + L +GDN +H+T A++K ++G  V E
Sbjct  121  DMLQTNGETNTAIVVIDPHGKRVKFDGRTSTGVSNLINGDNTIHFTAAVMKDGSGNHVKE  180

Query  176  GAFSAVATFNLSYQ  189
            GAFSAVA FNL+YQ
Sbjct  181  GAFSAVANFNLTYQ  194

8) papA in NC_011742


> AJ494981|16|G15|23954234|CAD42031.1|Escherichia_coli_536|-|18430..19014|prfA|-|PrfA 
protein
Length=194

 Score =  171 bits (633),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 114/194 (59%), Positives = 149/194 (77%), Gaps = 12/194 (6%)

Query  12   MIKSVIAGAVAMAVVSFGVNAAPTIPQGQGKVTFNGTVVDAPCSISQKSADQSIDFGQLS  71
            MIKSVIAGAVAMAVVSFGVNAA+T+PQGQGKVTF+GTVVDAPC+I  +SADQS+DFGQ+S
Sbjct  1    MIKSVIAGAVAMAVVSFGVNAAATVPQGQGKVTFSGTVVDAPCGIDAQSADQSVDFGQIS  60

Query  72   KSFLEAGGTSKPMDLDIELVNCDITAFKQ-------GQAAKNGKVQLSFTG-PQVTGQAE  123
            K FL+ +G + P  +DI LVNCDIT +K+       G A+K G V ++F+G    +G+A+
Sbjct  61   KVFLDNDGQTTPKAFDIKLVNCDITNYKKPATGAAPGGAPKAGTVSMTFSGVTAGAGNAN  120

Query  124  E-LATNGGTGTAIVV-QAAGKNVSFDGTAGDAYP-LKDGDNVLHYT-ALVKKANGGTVSE  179
            + L TNG T TAIVV ++ GK V FDG ++ + + L +GDN +H+T A++K ++G  V E
Sbjct  121  DMLQTNGETNTAIVVIDPHGKRVKFDGRTSTGVSNLINGDNTIHFTAAVMKDGSGNHVKE  180

Query  180  GAFSAVATFNLSYQ  193
            GAFSAVA FNL+YQ
Sbjct  181  GAFSAVANFNLTYQ  194

9) papA2 in NC_017646


> AJ494981|16|G15|23954234|CAD42031.1|Escherichia_coli_536|-|18430..19014|prfA|-|PrfA 
protein
Length=194

 Score =  169 bits (624),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 114/195 (59%), Positives = 147/195 (76%), Gaps = 9/195 (4%)

Query  8    MIKSVIAGAVAMAVVSFGAYAAPTIPQGQGKVTFNGTVVTAPCGISQKSADQSIDFGQLS  67
            MIKSVIAGAVAMAVVSFG  AA+T+PQGQGKVTF+GTVV APCGI  +SADQS+DFGQ+S
Sbjct  1    MIKSVIAGAVAMAVVSFGVNAAATVPQGQGKVTFSGTVVDAPCGIDAQSADQSVDFGQIS  60

Query  68   KSFLAAGGVSKPMNLDIELVNCDITSFK----GVGGNQAAKKGTVNLAFTGPI--VANHK  121
            K FL  +G + P  +DI LVNCDIT++K    G +   A+K GTV+++F+G     +N +
Sbjct  61   KVFLDNDGQTTPKAFDIKLVNCDITNYKKPATGAAPGGAPKAGTVSMTFSGVTAGAGNAN  120

Query  122  EELDTSGGTGTAIVV-QAAGKNVSFDGVAGDAYP-LKDGDNVLHYTAVVKKSSAAGATVT  179
            + L+T+G T TAIVV ++ GK V FDG ++ + + L +GDN +H+TA V K  ++G  V 
Sbjct  121  DMLQTNGETNTAIVVIDPHGKRVKFDGRTSTGVSNLINGDNTIHFTAAVMK-DGSGNHVK  179

Query  180  EGAFSAVANFNLTYQ  194
            EGAFSAVANFNLTYQ
Sbjct  180  EGAFSAVANFNLTYQ  194

10) UM146_21685 in NC_017632


> AJ494981|16|G15|23954234|CAD42031.1|Escherichia_coli_536|-|18430..19014|prfA|-|PrfA 
protein
Length=194

 Score =  161 bits (593),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 114/195 (59%), Positives = 150/195 (77%), Gaps = 9/195 (4%)

Query  1    MIKSVIAGAVAMAVVSFGVNAAPTTPQGQGRVTFNGTVVDAPCSISQKSADQSIDFGQLS  60
            MIKSVIAGAVAMAVVSFGVNAA+T PQGQG+VTF+GTVVDAPC+I  +SADQS+DFGQ+S
Sbjct  1    MIKSVIAGAVAMAVVSFGVNAAATVPQGQGKVTFSGTVVDAPCGIDAQSADQSVDFGQIS  60

Query  61   KSFLQAGGVSKPMNLDIELVNCDITSFkgvggap----aakkgtvkLAFSGPRV-SGHNE  115
            K FL+ +G + P  +DI LVNCDIT++K  + ++    A+K GTV ++FSG    +G+ +
Sbjct  61   KVFLDNDGQTTPKAFDIKLVNCDITNYKKPATGAAPGGAPKAGTVSMTFSGVTAGAGNAN  120

Query  116  E-LDTSGGTGTAIVV-QAAGKNVSFDG-TEGDANTLKDGDNVLHYTAIVKKSSANNAQVT  172
            + L+T+G T TAIVV ++ GK V FDG T  + + L +GDN +H+TA V K ++ N +V 
Sbjct  121  DMLQTNGETNTAIVVIDPHGKRVKFDGRTSTGVSNLINGDNTIHFTAAVMKDGSGN-HVK  179

Query  173  EGAFSAVATFNLSYQ  187
            EGAFSAVA FNL+YQ
Sbjct  180  EGAFSAVANFNLTYQ  194

11) papA in NC_007946


> AJ494981|16|G15|23954234|CAD42031.1|Escherichia_coli_536|-|18430..19014|prfA|-|PrfA 
protein
Length=194

 Score =  161 bits (593),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 114/195 (59%), Positives = 150/195 (77%), Gaps = 9/195 (4%)

Query  1    MIKSVIAGAVAMAVVSFGVNAAPTTPQGQGRVTFNGTVVDAPCSISQKSADQSIDFGQLS  60
            MIKSVIAGAVAMAVVSFGVNAA+T PQGQG+VTF+GTVVDAPC+I  +SADQS+DFGQ+S
Sbjct  1    MIKSVIAGAVAMAVVSFGVNAAATVPQGQGKVTFSGTVVDAPCGIDAQSADQSVDFGQIS  60

Query  61   KSFLQAGGVSKPMNLDIELVNCDITSFkgvggap----aakkgtvkLAFSGPRV-SGHNE  115
            K FL+ +G + P  +DI LVNCDIT++K  + ++    A+K GTV ++FSG    +G+ +
Sbjct  61   KVFLDNDGQTTPKAFDIKLVNCDITNYKKPATGAAPGGAPKAGTVSMTFSGVTAGAGNAN  120

Query  116  E-LDTSGGTGTAIVV-QAAGKNVSFDG-TEGDANTLKDGDNVLHYTAIVKKSSANNAQVT  172
            + L+T+G T TAIVV ++ GK V FDG T  + + L +GDN +H+TA V K ++ N +V 
Sbjct  121  DMLQTNGETNTAIVVIDPHGKRVKFDGRTSTGVSNLINGDNTIHFTAAVMKDGSGN-HVK  179

Query  173  EGAFSAVATFNLSYQ  187
            EGAFSAVA FNL+YQ
Sbjct  180  EGAFSAVANFNLTYQ  194

12) papA in NC_011750


> AJ494981|16|G15|23954234|CAD42031.1|Escherichia_coli_536|-|18430..19014|prfA|-|PrfA 
protein
Length=194

 Score =  160 bits (591),  Expect = 4e-41, Method: Compositional matrix adjust.
 Identities = 115/195 (59%), Positives = 147/195 (76%), Gaps = 9/195 (4%)

Query  12   MIKSVIAGAVAMAVVSFGAYAAPTIPQGQGKVTFNGTVVTAPCGISQKSADQSIDFGQLS  71
            MIKSVIAGAVAMAVVSFG  AA+T+PQGQGKVTF+GTVV APCGI  +SADQS+DFGQ+S
Sbjct  1    MIKSVIAGAVAMAVVSFGVNAAATVPQGQGKVTFSGTVVDAPCGIDAQSADQSVDFGQIS  60

Query  72   KSFLAAGGVSKPMNLDIELVNCDITSF----kggggsqaakkgTVKLAFSGPRV-SGHNE  126
            K FL  +G + P  +DI LVNCDIT++     G++ + A+K GTV ++FSG    +G+ +
Sbjct  61   KVFLDNDGQTTPKAFDIKLVNCDITNYKKPATGAAPGGAPKAGTVSMTFSGVTAGAGNAN  120

Query  127  E-LDTSGGTGTAIVV-QAAGKNVSFDG-TEGDANTLKDGDNVLHYTAVVKKSSAAGATVT  183
            + L+T+G T TAIVV ++ GK V FDG T  + + L +GDN +H+TA V K  ++G  V 
Sbjct  121  DMLQTNGETNTAIVVIDPHGKRVKFDGRTSTGVSNLINGDNTIHFTAAVMK-DGSGNHVK  179

Query  184  EGAFSAVANFNLTYQ  198
            EGAFSAVANFNLTYQ
Sbjct  180  EGAFSAVANFNLTYQ  194

13) papA1 in NC_017646


> AJ494981|16|G15|23954234|CAD42031.1|Escherichia_coli_536|-|18430..19014|prfA|-|PrfA 
protein
Length=194

 Score =  147 bits (543),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 109/189 (58%), Positives = 143/189 (76%), Gaps = 9/189 (4%)

Query  8    MIKSVIAGAVAMAVVSFGVNAALTTPQGQGRVTFNGTVVDAPCSISQKSADQSIDFGQLS  67
            MIKSVIAGAVAMAVVSFGVNAA T PQGQG+VTF+GTVVDAPC+I  +SADQS+DFGQ+S
Sbjct  1    MIKSVIAGAVAMAVVSFGVNAAATVPQGQGKVTFSGTVVDAPCGIDAQSADQSVDFGQIS  60

Query  68   KSFLQAGGVSKPMNLDIELVNCDITSF----kggggvsaakkgtvkLAFSGPRV-SGHNE  122
            K FL+ +G + P  +DI LVNCDIT++     G++  +A+K GTV ++FSG    +G+ +
Sbjct  61   KVFLDNDGQTTPKAFDIKLVNCDITNYKKPATGAAPGGAPKAGTVSMTFSGVTAGAGNAN  120

Query  123  E-LDTSGGTGTAIVV-QAAGKNVSFDG-TEGDANTLKDGDNVLHYTAIVKKSSANNAQVT  179
            + L+T+G T TAIVV ++ GK V FDG T  + + L +GDN +H+TA V K ++ N +V 
Sbjct  121  DMLQTNGETNTAIVVIDPHGKRVKFDGRTSTGVSNLINGDNTIHFTAAVMKDGSGN-HVK  179

Query  180  EGAFSAVAT  188
            EGAFSAVA 
Sbjct  180  EGAFSAVAN  188

14) ECP_2972 in NC_008253


> AJ494981|16|G15|23954234|CAD42031.1|Escherichia_coli_536|-|18430..19014|prfA|-|PrfA 
protein
Length=194

 Score =  134 bits (491),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 94/195 (49%), Positives = 134/195 (69%), Gaps = 19/195 (9%)

Query  1    MLKSTLGIAIAFSLCA----VAHAANQGQGVVNFKGTVIDAPCGIAPESADQTIDFGQIS  56
            M+KS ++ A+A ++ +     A +  QGQG V F GTV+DAPCGI ++SADQ++DFGQIS
Sbjct  1    MIKSVIAGAVAMAVVSFGVNAAATVPQGQGKVTFSGTVVDAPCGIDAQSADQSVDFGQIS  60

Query  57   KSHLKNDGISVKKDLDIKLVNCD---FTDPTA---------KKTVSVTFSG-TPVNGHTD  103
            K  L NDG +  K +DIKLVNCD   +  P++           TVS+TFSG T+  G+++
Sbjct  61   KVFLDNDGQTTPKAFDIKLVNCDITNYKKPATGAAPGGAPKAGTVSMTFSGVTAGAGNAN  120

Query  104  E-LGTAGDTGTAVVVSASDGSMVKFDGTTSSNATQLQDGDNTLKYTTWVKKSSAAGTEVK  162
            + L T G+T TA+VV  ++G  VKFDG TS+  ++L +GDNT+ +T+ V K  ++G +VK
Sbjct  121  DMLQTNGETNTAIVVIDPHGKRVKFDGRTSTGVSNLINGDNTIHFTAAVMK-DGSGNHVK  179

Query  163  EGDFTAVANFNLSYQ  177
            EG F+AVANFNL+YQ
Sbjct  180  EGAFSAVANFNLTYQ  194

15) ETAC_10690 in NC_020796


> AJ494981|16|G15|23954234|CAD42031.1|Escherichia_coli_536|-|18430..19014|prfA|-|PrfA 
protein
Length=194

 Score =  113 bits (413),  Expect = 5e-27, Method: Compositional matrix adjust.
 Identities = 82/188 (44%), Positives = 125/188 (67%), Gaps = 21/188 (11%)

Query  9    AGAMTIALVTFGTQAAS----GQGVVNFSGTVITAPCGISPESADQSIDFGQISKSHLEA  64
            AGA+++A+V+FG +AA+    GQG V FSGTV+ APCGI ++SADQS+DFGQISK  L+ 
Sbjct  7    AGAVAMAVVSFGVNAAATVPQGQGKVTFSGTVVDAPCGIDAQSADQSVDFGQISKVFLDN  66

Query  65   GGISVKKNLDIKLVGCDAT------------ALAQTGSANVTFTGVTITGAPTE--LGTT  110
            +G +  K +DIKLV CD T            + +++G+ ++TF+GVT  ++ ++  L T 
Sbjct  67   DGQTTPKAFDIKLVNCDITNYKKPATGAAPGGAPKAGTVSMTFSGVTAGAGNANDMLQTN  126

Query  111  GSTGTAIVISSEDGSLVSFG--NAGSAQKLKVGDNLLRYSAWV-KTATGGTLAEGDFASV  167
            G T TAIV+   +G  V F+   + +  +L  GDN ++++A V K ++G  + EG F++V
Sbjct  127  GETNTAIVVIDPHGKRVKFDGRTSTGVSNLINGDNTIHFTAAVMKDGSGNHVKEGAFSAV  186

Query  168  ANFNITYQ  175
            ANFN+TYQ
Sbjct  187  ANFNLTYQ  194

16) fimA in NC_017309


> AJ494981|16|G15|23954234|CAD42031.1|Escherichia_coli_536|-|18430..19014|prfA|-|PrfA 
protein
Length=194

 Score =  113 bits (411),  Expect = 7e-27, Method: Compositional matrix adjust.
 Identities = 82/188 (44%), Positives = 124/188 (66%), Gaps = 21/188 (11%)

Query  12   AGAMTIALVTFGSQAAS----GQGVVNFSGTVITAPCGIAPESADQSIDFGQISKSHLEA  67
            AGA+++A+V+FG +AA+    GQG V FSGTV+ APCGI ++SADQS+DFGQISK  L+ 
Sbjct  7    AGAVAMAVVSFGVNAAATVPQGQGKVTFSGTVVDAPCGIDAQSADQSVDFGQISKVFLDN  66

Query  68   GGISVKKNIDIKLVGCDAT------------ALAQTGSAKVTFTGVTITGAPTE--LGTT  113
            +G +  K +DIKLV CD T            + +++G+  +TF+GVT  ++ ++  L T 
Sbjct  67   DGQTTPKAFDIKLVNCDITNYKKPATGAAPGGAPKAGTVSMTFSGVTAGAGNANDMLQTN  126

Query  114  GSTGTAIVISSEDGSLVSFG--NAGSAQKLKVGDNILRYSAWV-KSATGGTLAEGDFASV  170
            G T TAIV+   +G  V F+   + +  +L  GDN ++++A V K ++G  + EG F++V
Sbjct  127  GETNTAIVVIDPHGKRVKFDGRTSTGVSNLINGDNTIHFTAAVMKDGSGNHVKEGAFSAV  186

Query  171  ANFNITYQ  178
            ANFN+TYQ
Sbjct  187  ANFNLTYQ  194

17) ETAE_2255 in NC_013508


> AJ494981|16|G15|23954234|CAD42031.1|Escherichia_coli_536|-|18430..19014|prfA|-|PrfA 
protein
Length=194

 Score =  113 bits (410),  Expect = 9e-27, Method: Compositional matrix adjust.
 Identities = 82/188 (44%), Positives = 124/188 (66%), Gaps = 21/188 (11%)

Query  9    AGAMTIALVTFGSQAAS----GQGVVNFSGTVITAPCGIAPESADQSIDFGQISKSHLEA  64
            AGA+++A+V+FG +AA+    GQG V FSGTV+ APCGI ++SADQS+DFGQISK  L+ 
Sbjct  7    AGAVAMAVVSFGVNAAATVPQGQGKVTFSGTVVDAPCGIDAQSADQSVDFGQISKVFLDN  66

Query  65   GGISVKKNIDIKLVGCDAT------------ALAQTGSAKVTFTGVTITGAPTE--LGTT  110
            +G +  K +DIKLV CD T            + +++G+  +TF+GVT  ++ ++  L T 
Sbjct  67   DGQTTPKAFDIKLVNCDITNYKKPATGAAPGGAPKAGTVSMTFSGVTAGAGNANDMLQTN  126

Query  111  GSTGTAIVISSEDGSLVSFG--NAGSAQKLKVGDNILRYSAWV-KSATGGTLAEGDFASV  167
            G T TAIV+   +G  V F+   + +  +L  GDN ++++A V K ++G  + EG F++V
Sbjct  127  GETNTAIVVIDPHGKRVKFDGRTSTGVSNLINGDNTIHFTAAVMKDGSGNHVKEGAFSAV  186

Query  168  ANFNITYQ  175
            ANFN+TYQ
Sbjct  187  ANFNLTYQ  194

18) pmpA in NC_022000


> AJ494981|16|G15|23954234|CAD42031.1|Escherichia_coli_536|-|18430..19014|prfA|-|PrfA 
protein
Length=194

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 73/175 (42%), Positives = 118/175 (68%), Gaps = 11/175 (6%)

Query  19   TVAQAASGDGTITFTGKVIDAPCGIATESANQAIDFGQISKSLLEKDGISQVKQIPIKLV  78
            + A  + G+G +TF+G V+DAPCGI ++SA+Q++DFGQISK +L++DG +  K + IKLV
Sbjct  21   AAATVPQGQGKVTFSGTVVDAPCGIDAQSADQSVDFGQISKVFLDNDGQTTPKAFDIKLV  80

Query  79   NCDLT---KAGSDTGAAGSYKG--VKVTFNGNTITG--ATEELATTGNTGTAIVISGTTT  131
            NCD+T   K++++++++G+ K+  V +TF+G T  +  A + L T G+T TAIV+ +   
Sbjct  81   NCDITNYKKPATGAAPGGAPKAGTVSMTFSGVTAGAGNANDMLQTNGETNTAIVVID-PH  139

Query  132  GSMVKFNE--AGELQALGNNDNTLMYTAWAKKATNGT-IAEGEFNATTNFTLAYE  183
            G  VKF+   +  +  L N DNT+ +TA   K  +G  + EG F+A +NF L+Y+
Sbjct  140  GKRVKFDGRTSTGVSNLINGDNTIHFTAAVMKDGSGNHVKEGAFSAVANFNLTYQ  194

19) pmpA in NC_010554


> AJ494981|16|G15|23954234|CAD42031.1|Escherichia_coli_536|-|18430..19014|prfA|-|PrfA 
protein
Length=194

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 73/175 (42%), Positives = 118/175 (68%), Gaps = 11/175 (6%)

Query  19   TVAQAASGDGTITFTGKVIDAPCGIATESANQAIDFGQISKSLLEKDGISQVKQIPIKLV  78
            + A  + G+G +TF+G V+DAPCGI ++SA+Q++DFGQISK +L++DG +  K + IKLV
Sbjct  21   AAATVPQGQGKVTFSGTVVDAPCGIDAQSADQSVDFGQISKVFLDNDGQTTPKAFDIKLV  80

Query  79   NCDLT---KAGSDTGAAGSYKG--VKVTFNGNTITG--ATEELATTGNTGTAIVISGTTT  131
            NCD+T   K++++++++G+ K+  V +TF+G T  +  A + L T G+T TAIV+ +   
Sbjct  81   NCDITNYKKPATGAAPGGAPKAGTVSMTFSGVTAGAGNANDMLQTNGETNTAIVVID-PH  139

Query  132  GSMVKFNE--AGELQALGNNDNTLMYTAWAKKATNGT-IAEGEFNATTNFTLAYE  183
            G  VKF+   +  +  L N DNT+ +TA   K  +G  + EG F+A +NF L+Y+
Sbjct  140  GKRVKFDGRTSTGVSNLINGDNTIHFTAAVMKDGSGNHVKEGAFSAVANFNLTYQ  194