Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of shcM gene of NC_004578_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) shcM
( NP_791201.1 )

type III chaperone ShcM

NC_004578
(Pseudomonas syringae DC3000)

2e-72

100

2) shcM
( YP_273525.1 )

type III chaperone protein ShcM

NC_005773
(Pseudomonas syringae 1448A)

1e-66

3) Psyr_1185
( YP_234277.1 )

effector locus protein

NC_007005
(Pseudomonas syringae B728a)

1e-62

• Sequence Alignments

1) shcM in NC_004578


> NC_004578_P1|16|G11|28868582|NP_791201.1|Pseudomonas_syringae_pv._tomato_str._DC3000|+|8576..9070|shcM|PSPTO_1374|type 
III 
chaperone ShcM
Length=164

 Score =  265 bits (990),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 164/164 (100%), Positives = 164/164 (100%), Gaps = 0/164 (0%)

Query  1    MTNNDQYHTLINEICALSLISTPERFYESANFKISEVDFTLQFQDRDEGRAVLIYGDMGA  60
            MTNNDQYHTLINEICALSLISTPERFYESANFKISEVDFTLQFQDRDEGRAVLIYGDMGA
Sbjct  1    MTNNDQYHTLINEICALSLISTPERFYESANFKISEVDFTLQFQDRDEGRAVLIYGDMGA  60

Query  61   LPARGRESALLALMDINFHMFAGAHSPAFSFNAQTGRVLLMGSVALERASAEGVLLLMKS  120
            LPARGRESALLALMDINFHMFAGAHSPAFSFNAQTGRVLLMGSVALERASAEGVLLLMKS
Sbjct  61   LPARGRESALLALMDINFHMFAGAHSPAFSFNAQTGRVLLMGSVALERASAEGVLLLMKS  120

Query  121  FSDLAKEWREHGFMGQATTAGSSTDQPVAPAAKRESLSAPGRFQ  164
            FSDLAKEWREHGFMGQATTAGSSTDQPVAPAAKRESLSAPGRFQ
Sbjct  121  FSDLAKEWREHGFMGQATTAGSSTDQPVAPAAKRESLSAPGRFQ  164

2) shcM in NC_005773


> NC_004578_P1|16|G11|28868582|NP_791201.1|Pseudomonas_syringae_pv._tomato_str._DC3000|+|8576..9070|shcM|PSPTO_1374|type 
III 
chaperone ShcM
Length=164

 Score =  245 bits (915),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 140/164 (86%), Positives = 156/164 (96%), Gaps = 0/164 (0%)

Query  1    MTNNDPYHTLINEICALSLISTPERFYESANFKISEVDFTLQYQDRDEGRAVLIYGDMGA  60
            MTNND YHTLINEICALSLISTPERFYESANFKISEVDFTLQ+QDRDEGRAVLIYGDMGA
Sbjct  1    MTNNDQYHTLINEICALSLISTPERFYESANFKISEVDFTLQFQDRDEGRAVLIYGDMGA  60

Query  61   LPTRNRDAALLALMDINFHMFSGVHSPVFSWNAQTSRVLLMGSVSLERASAEGVLLLMKS  120
            LP+R R++ALLALMDINFHMF+G HSP FS NAQT+RVLLMGSV+LERASAEGVLLLMKS
Sbjct  61   LPARGRESALLALMDINFHMFAGAHSPAFSFNAQTGRVLLMGSVALERASAEGVLLLMKS  120

Query  121  FADLANEWREHGFIGQVKTAGAPAEQPVATAAKRESLSASGKFQ  164
            F+DLA+EWREHGF+GQ  TAG++++QPVA AAKRESLSA+G+FQ
Sbjct  121  FSDLAKEWREHGFMGQATTAGSSTDQPVAPAAKRESLSAPGRFQ  164

3) Psyr_1185 in NC_007005


> NC_004578_P1|16|G11|28868582|NP_791201.1|Pseudomonas_syringae_pv._tomato_str._DC3000|+|8576..9070|shcM|PSPTO_1374|type 
III 
chaperone ShcM
Length=164

 Score =  232 bits (865),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 126/164 (77%), Positives = 149/164 (91%), Gaps = 0/164 (0%)

Query  1    MNRNDAYHTLISEICALSLISEPERFYESANFKISDVDFTLHYQDRDEGRAILIYGDMGA  60
            M  ND YHTLI+EICALSLIS PERFYESANFKIS+VDFTL++QDRDEGRA+LIYGDMGA
Sbjct  1    MTNNDQYHTLINEICALSLISTPERFYESANFKISEVDFTLQFQDRDEGRAVLIYGDMGA  60

Query  61   LPARNRDSALLALMDINFHMFSGAHSPAFSWNAQTGRVLLMGSIGLERATAEGVLLLMKS  120
            LPAR R+SALLALMDINFHMF+GAHSPAFS NAQTGRVLLMGS++LERA+AEGVLLLMKS
Sbjct  61   LPARGRESALLALMDINFHMFAGAHSPAFSFNAQTGRVLLMGSVALERASAEGVLLLMKS  120

Query  121  FADLAREWREHGFMGPVGAAGAPVNMPASQATTRDTPASSGRFQ  164
            F+DLA+EWREHGFMG   +AG++ + P + A+ R++ +++GRFQ
Sbjct  121  FSDLAKEWREHGFMGQATTAGSSTDQPVAPAAKRESLSAPGRFQ  164