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Homologs of ccmF gene of NC_006905_P4

626

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SSPA0578
( YP_002141421.1 )

cytochrome c-type biogenesis protein F1

NC_011147
(Salmonella enterica AKU12601)

0.0

2) ccmF2
( YP_002144258.1 )

cytochrome c-type biogenesis protein F2

NC_011147
(Salmonella enterica AKU12601)

0.0

3) ccmF
( YP_149928.1 )

cytochrome c-type biogenesis protein F1

NC_006511
(Salmonella enterica ATCC 9150)

0.0

4) ccmF
( YP_152769.1 )

cytochrome c-type biogenesis protein F1

NC_006511
(Salmonella enterica ATCC 9150)

0.0

5) ccmF
( YP_002637062.1 )

cytochrome c-type biogenesis protein

NC_012125
(Salmonella enterica RKS4594)

0.0

100

6) ccmF
( YP_002639413.1 )

cytochrome c-type biogenesis protein

NC_012125
(Salmonella enterica RKS4594)

0.0

100

7) ccmF
( YP_217241.1 )

cytochrome c-type biogenesis protein

NC_006905
(Salmonella enterica SC-B67)

0.0

100

8) ccmF
( YP_218723.1 )

cytochrome c-type biogenesis protein

NC_006905
(Salmonella enterica SC-B67)

0.0

100

9) ccmF
( YP_002216320.1 )

cytochrome c-type biogenesis protein CcmF

NC_011205
(Salmonella enterica CT_02021853)

0.0

10) ccmF
( YP_002217763.1 )

cytochrome c-type biogenesis protein CcmF

NC_011205
(Salmonella enterica CT_02021853)

0.0

11) SEN2232
( YP_002244320.1 )

cytochrome c-type biogenesis protein F1

NC_011294
(Salmonella enterica P125109)

0.0

12) ccmF
( YP_002245690.1 )

cytochrome C-type biogenesis protein

NC_011294
(Salmonella enterica P125109)

0.0

13) SPUCDC_0642
( YP_008480346.1 )

cytochrome c-type biogenesis protein F1

NC_022221
(Salmonella enterica CDC1983-67)

0.0

14) SPUCDC_3738
( YP_008483284.1 )

cytochrome c-type biogenesis protein F1

NC_022221
(Salmonella enterica CDC1983-67)

0.0

15) SEEB0189_00790
( YP_008306529.1 )

heme lyase subunit CcmF

NC_021844
(Salmonella enterica CFSAN000189)

0.0

16) SEEB0189_08320
( YP_008307997.1 )

heme lyase subunit CcmF

NC_021844
(Salmonella enterica CFSAN000189)

0.0

17) ccmF1
( NP_456794.1 )

cytochrome c-type biogenesis protein F1

NC_003198
(Salmonella enterica CT18)

0.0

18) ccmF2
( NP_458125.1 )

cytochrome c-type biogenesis protein F2

NC_003198
(Salmonella enterica CT18)

0.0

19) STBHUCCB_6570
( YP_005216248.1 )

Cytochrome c-type biogenesis protein CcmF

NC_016832
(Salmonella enterica P-stx-12)

0.0

20) STBHUCCB_39000
( YP_005219350.1 )

Cytochrome c-type biogenesis protein CcmF

NC_016832
(Salmonella enterica P-stx-12)

0.0

21) SPUL_0642
( YP_005211887.1 )

cytochrome c-type biogenesis protein F1

NC_016831
(Salmonella enterica RKS5078)

0.0

22) SPUL_3752
( YP_005214824.1 )

cytochrome c-type biogenesis protein F1

NC_016831
(Salmonella enterica RKS5078)

0.0

23) I137_02940
( YP_008380137.1 )

heme lyase subunit CcmF

NC_021984
(Salmonella enterica S06004)

0.0

24) I137_18020
( YP_008382933.1 )

heme lyase subunit CcmF

NC_021984
(Salmonella enterica S06004)

0.0

25) ccmF
( NP_804471.1 )

cytochrome c-type biogenesis protein F1

NC_004631
(Salmonella enterica Ty2)

0.0

26) ccmF
( NP_807339.1 )

cytochrome c-type biogenesis protein F2

NC_004631
(Salmonella enterica Ty2)

0.0

27) TY21A_03130
( YP_007924966.1 )

cytochrome c-type biogenesis protein F2

NC_021176
(Salmonella enterica Ty21a)

0.0

28) TY21A_18755
( YP_007927942.1 )

cytochrome c-type biogenesis protein F2

NC_021176
(Salmonella enterica Ty21a)

0.0

29) SE451236_01825
( YP_008263439.1 )

heme lyase subunit CcmF

NC_021820
(Salmonella enterica 08-1736)

0.0

30) SE451236_17445
( YP_008266496.1 )

heme lyase subunit CcmF

NC_021820
(Salmonella enterica 08-1736)

0.0

31) ccmF_1
( YP_005238315.1 )

cytochrome c-type biogenesis protein

NC_016856
(Salmonella enterica 14028S)

0.0

32) ccmF_2
( YP_005240080.1 )

cytochrome c-type biogenesis protein

NC_016856
(Salmonella enterica 14028S)

0.0

33) SBOV39081
( YP_008506148.1 )

hypothetical protein

NC_022241
(Salmonella enterica 3114)

0.0

34) ccmF1
( YP_005397640.1 )

cytochrome C-type biogenesis protein

NC_017046
(Salmonella enterica 798)

0.0

35) ccmF1
( YP_005399130.1 )

cytochrome C-type biogenesis protein

NC_017046
(Salmonella enterica 798)

0.0

36) CFSAN001921_05545
( YP_008254499.1 )

heme lyase subunit CcmF

NC_021814
(Salmonella enterica CFSAN001921)

0.0

37) CFSAN001921_21355
( YP_008257569.1 )

heme lyase subunit CcmF

NC_021814
(Salmonella enterica CFSAN001921)

0.0

38) STMMW_22783
( YP_005233312.1 )

cytochrome C-type biogenesis protein

NC_016854
(Salmonella enterica D23580)

0.0

39) ccmF
( NP_461192.1 )

cytochrome c-type biogenesis protein

NC_003197
(Salmonella enterica LT2)

0.0

40) ccmF
( NP_462714.1 )

cytochrome c-type biogenesis protein

NC_003197
(Salmonella enterica LT2)

0.0

41) ccmF2
( YP_005182117.1 )

cytochrome C-type biogenesis protein

NC_016810
(Salmonella enterica SL1344)

0.0

42) ccmF1
( YP_005183655.1 )

cytochrome C-type biogenesis protein

NC_016810
(Salmonella enterica SL1344)

0.0

43) ccmF
( YP_002041512.1 )

cytochrome c-type biogenesis protein CcmF

NC_011080
(Salmonella enterica SL254)

0.0

44) ccmF
( YP_002043062.1 )

cytochrome c-type biogenesis protein CcmF

NC_011080
(Salmonella enterica SL254)

0.0

45) ccmF
( YP_002147207.1 )

cytochrome c-type biogenesis protein CcmF

NC_011149
(Salmonella enterica SL483)

0.0

46) ccmF
( YP_002148752.1 )

cytochrome c-type biogenesis protein CcmF

NC_011149
(Salmonella enterica SL483)

0.0

47) ccmF
( YP_005243209.1 )

cytochrome c-type biogenesis protein CcmF

NC_016857
(Salmonella enterica ST4/74)

0.0

48) ccmF
( YP_005244803.1 )

cytochrome c-type biogenesis protein CcmF

NC_016857
(Salmonella enterica ST4/74)

0.0

49) STMDT12_C22710
( YP_005247967.1 )

cytochrome c-type biogenesis protein CcmF

NC_016860
(Salmonella enterica T000240)

0.0

50) STMDT12_C39740
( YP_005249670.1 )

cytochrome c-type biogenesis protein CcmF

NC_016860
(Salmonella enterica T000240)

0.0

51) STU288_07620
( YP_007902623.1 )

heme lyase subunit CcmF

NC_021151
(Salmonella enterica U288)

0.0

52) STU288_19280
( YP_007904941.1 )

heme lyase subunit CcmF

NC_021151
(Salmonella enterica U288)

0.0

53) ccmE
( YP_005252800.1 )

cytochrome c-type biogenesis protein CcmE

NC_016863
(Salmonella enterica UK-1)

0.0

54) ccmF
( YP_005254280.1 )

cytochrome c-type biogenesis protein

NC_016863
(Salmonella enterica UK-1)

0.0

55) SN31241_610
( YP_008357980.1 )

Cytochrome c-type biogenesis protein CcmF

NC_021902
(Salmonella enterica USMARC-S3124.1)

0.0

56) SN31241_33530
( YP_008361269.1 )

Cytochrome c-type biogenesis protein CcmF

NC_021902
(Salmonella enterica USMARC-S3124.1)

0.0

57) CFSAN002050_01960
( YP_008258379.1 )

heme lyase subunit CcmF

NC_021818
(Salmonella enterica CFSAN002050)

0.0

58) CFSAN002050_18175
( YP_008261527.1 )

heme lyase subunit CcmF

NC_021818
(Salmonella enterica CFSAN002050)

0.0

59) ccmF
( YP_002115324.1 )

cytochrome c-type biogenesis protein CcmF

NC_011094
(Salmonella enterica CVM19633)

0.0

60) ccmF
( YP_002116757.1 )

cytochrome c-type biogenesis protein CcmF

NC_011094
(Salmonella enterica CVM19633)

0.0

61) SPAB_00743
( YP_001587001.1 )

hypothetical protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

0.0

62) SPAB_04750
( YP_001590894.1 )

hypothetical protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

0.0

63) SG2277
( YP_002227168.1 )

cytochrome c-type biogenesis protein F1

NC_011274
(Salmonella enterica 287/91)

0.0

64) ccmF
( YP_002228399.1 )

cytochrome c-type biogenesis protein F1

NC_011274
(Salmonella enterica 287/91)

0.0

65) SEEH1578_05235
( YP_008245120.1 )

heme lyase subunit CcmF

NC_021810
(Salmonella enterica 41578)

0.0

66) SEEH1578_20520
( YP_008248157.1 )

heme lyase subunit CcmF

NC_021810
(Salmonella enterica 41578)

0.0

67) SU5_04291
( YP_006089886.1 )

Cytochrome c heme lyase subunit CcmF

NC_017623
(Salmonella enterica B182)

0.0

68) CFSAN002069_12940
( YP_008251369.1 )

heme lyase subunit CcmF

NC_021812
(Salmonella enterica CFSAN002069)

0.0

69) CFSAN002069_20595
( YP_008252859.1 )

heme lyase subunit CcmF

NC_021812
(Salmonella enterica CFSAN002069)

0.0

70) ccmF
( YP_002046304.1 )

cytochrome c-type biogenesis protein CcmF

NC_011083
(Salmonella enterica SL476)

0.0

71) ccmF
( YP_002047845.1 )

cytochrome c-type biogenesis protein CcmF

NC_011083
(Salmonella enterica SL476)

0.0

72) CFSAN001992_00195
( YP_007469810.1 )

heme lyase subunit CcmF

NC_020307
(Salmonella enterica CFSAN001992)

0.0

73) CFSAN001992_14555
( YP_007472639.1 )

heme lyase subunit CcmF

NC_020307
(Salmonella enterica CFSAN001992)

0.0

74) SARI_03830
( YP_001572766.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

0.0

75) SARI_00641
( YP_001569707.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

0.0

76) A464_2367
( YP_008322962.1 )

Cytochrome c heme lyase subunit CcmF

NC_021870
(Salmonella bongori N268-08)

0.0

77) A464_3884
( YP_008324478.1 )

Cytochrome c heme lyase subunit CcmF

NC_021870
(Salmonella bongori N268-08)

0.0

78) ccmF2
( YP_004730880.1 )

cytochrome c-type biogenesis protein F2

NC_015761
(Salmonella bongori NCTC 12419)

0.0

79) ccmF
( YP_004732176.1 )

cytochrome c-type biogenesis protein F

NC_015761
(Salmonella bongori NCTC 12419)

0.0

80) CKO_00581
( YP_001452172.1 )

hypothetical protein

NC_009792
(Citrobacter koseri ATCC BAA-895)

0.0

81) ccmF
( YP_002383402.1 )

heme lyase, CcmF subunit

NC_011740
(Escherichia fergusonii ATCC 35469)

0.0

82) ccmF
( YP_006169302.1 )

Cytochrome c-type biogenesis protein ccmF

NC_017663
(Escherichia coli P12b)

0.0

83) ccmF
( YP_006096744.1 )

cytochrome C-type biogenesis protein

NC_017626
(Escherichia coli 042)

0.0

84) ccmF
( YP_002413244.1 )

heme lyase, CcmF subunit

NC_011751
(Escherichia coli UMN026)

0.0

85) O3M_08420
( YP_006769343.1 )

heme lyase, CcmF subunit

NC_018650
(Escherichia coli 2009EL-2050)

0.0

86) O3O_17165
( YP_006783470.1 )

heme lyase, CcmF subunit

NC_018661
(Escherichia coli 2009EL-2071)

0.0

87) O3K_08470
( YP_006778399.1 )

heme lyase, CcmF subunit

NC_018658
(Escherichia coli 2011C-3493)

0.0

88) ECP_2236
( YP_670135.1 )

cytochrome c-type biogenesis protein CcmF

NC_008253
(Escherichia coli 536)

0.0

89) ccmF
( YP_002403475.1 )

heme lyase, CcmF subunit

NC_011748
(Escherichia coli 55989)

0.0

90) ccmF
( YP_006106568.1 )

cytochrome c-type biogenesis protein CcmF

NC_017631
(Escherichia coli ABU 83972)

0.0

91) ccmF
( YP_853304.1 )

heme lyase, CcmF subunit

NC_008563
(Escherichia coli APEC O1)

0.0

92) APECO78_14810
( YP_007382131.1 )

heme lyase subunit CcmF

NC_020163
(Escherichia coli APEC O78)

0.0

93) ccmF
( YP_002999863.1 )

cytochrome c-type biogenesis protein, subunit of CcmEFGH holocytochrome c synthetase

NC_012892
(Escherichia coli BL21(DE3))

0.0

94) ccmF
( YP_003054717.1 )

heme lyase, CcmF subunit

NC_012971
(Escherichia coli BL21(DE3))

0.0

95) ccmF
( YP_003500265.1 )

cytochrome c-type biogenesis protein CcmF

NC_013941
(Escherichia coli CB9615)

0.0

96) ccmF
( NP_754619.1 )

cytochrome c-type biogenesis protein ccmF

NC_004431
(Escherichia coli CFT073)

0.0

97) ccmF
( YP_006154629.1 )

cytochrome c-type biogenesis protein ccmF

NC_017652
(Escherichia coli clone D i14)

0.0

98) ccmF
( YP_006149710.1 )

cytochrome c-type biogenesis protein ccmF

NC_017651
(Escherichia coli clone D i2)

0.0

99) EcDH1_1463
( YP_006091422.1 )

cytochrome c-type biogenesis protein CcmF

NC_017625
(Escherichia coli DH1)

0.0

100) ccmF
( YP_006129532.1 )

heme lyase, CcmF subunit

NC_017638
(Escherichia coli DH1)

0.0

101) ccmF
( YP_002329845.1 )

heme lyase, CcmF subunit

NC_011601
(Escherichia coli E2348/69)

0.0

102) ccmF
( YP_002271608.1 )

cytochrome c-type biogenesis protein CcmF

NC_011353
(Escherichia coli EC4115)

0.0

103) ccmF
( YP_002398570.1 )

heme lyase CcmF

NC_011745
(Escherichia coli ED1a)

0.0

104) ECBD_1464
( YP_003035711.1 )

cytochrome C assembly protein

NC_012947
(Escherichia coli Escherichia coli BL21-Gold(DE3)pLysS AG)

0.0

105) ETEC_2330
( YP_006115888.1 )

cytochrome C-type biogenesis protein

NC_017633
(Escherichia coli ETEC H10407)

0.0

106) ccmF
( YP_006101581.1 )

cytochrome c-type biogenesis protein CcmF

NC_017628
(Escherichia coli IHE3034)

0.0

107) ccmF
( YP_001731136.1 )

heme lyase, CcmF subunit

NC_010473
(Escherichia coli K-12)

0.0

108) ccmF
( YP_002927166.1 )

heme lyase, CcmF subunit

NC_012759
(Escherichia coli K-12)

0.0

109) ccmF
( YP_007557380.1 )

heme lyase, CcmF subunit

NC_020518
(Escherichia coli K-12)

0.0

110) ccmF
( YP_490434.1 )

heme lyase, CcmF subunit

NC_007779
(Escherichia coli K-12)

0.0

111) ccmF
( NP_416700.1 )

heme lyase, CcmF subunit

NC_000913
(Escherichia coli K12)

0.0

112) EKO11_1560
( YP_005277249.1 )

cytochrome c-type biogenesis protein CcmF

NC_016902
(Escherichia coli KO11FL)

0.0

113) ccmF
( YP_006164655.1 )

heme lyase, CcmF subunit

NC_017660
(Escherichia coli KO11FL)

0.0

114) LY180_11470
( YP_008565384.1 )

heme lyase subunit CcmF

NC_022364
(Escherichia coli LY180)

0.0

115) ccmF
( YP_006139396.1 )

Cytochrome c-type biogenesis protein

NC_017644
(Escherichia coli NA114)

0.0

116) ccmF_1
( YP_008572180.1 )

Cytochrome c-type biogenesis protein CcmF

NC_022370
(Escherichia coli PMV-1)

0.0

117) ccmF
( YP_003045316.1 )

heme lyase, CcmF subunit

NC_012967
(Escherichia coli REL606)

0.0

118) ECO55CA74_13535
( YP_006159840.1 )

cytochrome c-type biogenesis protein CcmF

NC_017656
(Escherichia coli RM12579)

0.0

119) ccmF
( YP_002392026.1 )

heme lyase, CcmF subunit

NC_011742
(Escherichia coli S88)

0.0

120) ECs3085
( NP_311112.1 )

cytochrome c-type biogenesis protein

NC_002695
(Escherichia coli Sakai)

0.0

121) ECSE_2464
( YP_002293739.1 )

cytochrome c-type biogenesis protein

NC_011415
(Escherichia coli SE11)

0.0

122) ccmF
( YP_001744389.1 )

cytochrome c-type biogenesis protein CcmF

NC_010498
(Escherichia coli SMS-3-5)

0.0

123) ccmF
( YP_003078932.1 )

heme lyase CcmF

NC_013008
(Escherichia coli TW14359)

0.0

124) UM146_05825
( YP_006110082.1 )

heme lyase, CcmF subunit

NC_017632
(Escherichia coli UM146)

0.0

125) ccmF
( YP_541472.1 )

cytochrome c-type biogenesis protein CcmF

NC_007946
(Escherichia coli UTI89)

0.0

126) ccmF
( YP_006125072.1 )

heme lyase, CcmF subunit

NC_017635
(Escherichia coli W)

0.0

127) ccmF
( YP_006173791.1 )

heme lyase, CcmF subunit

NC_017664
(Escherichia coli W)

0.0

128) CDCO157_2848
( YP_006313718.1 )

cytochrome c-type biogenesis protein

NC_017906
(Escherichia coli Xuzhou21)

0.0

129) ccmF
( YP_408517.1 )

cytochrome c-type biogenesis protein

NC_007613
(Shigella boydii Sb227)

0.0

130) ccmF
( YP_006144619.1 )

heme lyase, CcmF subunit

NC_017646
(Escherichia coli CE10)

0.0

131) ccmF
( YP_002408294.1 )

heme lyase CcmF

NC_011750
(Escherichia coli IAI39)

0.0

132) ccmF
( YP_006134473.1 )

cytochrome c-type biogenesis protein CcmF

NC_017641
(Escherichia coli UMNK88)

0.0

133) ccmF
( YP_005727924.1 )

Cytochrome c-type biogenesis protein

NC_017328
(Shigella flexneri 2002017)

0.0

134) ccmF
( NP_837807.1 )

cytochrome c-type biogenesis protein

NC_004741
(Shigella flexneri 2457T)

0.0

135) ccmF
( NP_708092.1 )

cytochrome c-type biogenesis protein

NC_004337
(Shigella flexneri 301)

0.0

136) ccmF
( YP_689692.1 )

cytochrome c-type biogenesis protein

NC_008258
(Shigella flexneri 8401)

0.0

137) ccmF
( YP_003235314.1 )

heme lyase, CcmF subunit

NC_013364
(Escherichia coli 11128)

0.0

138) ccmF
( YP_003230074.1 )

heme lyase, CcmF subunit

NC_013361
(Escherichia coli 11368)

0.0

139) ccmF
( YP_003222576.1 )

heme lyase, CcmF subunit

NC_013353
(Escherichia coli 12009)

0.0

140) ccmF
( YP_001463547.1 )

cytochrome c-type biogenesis protein CcmF

NC_009801
(Escherichia coli E24377A)

0.0

141) ccmF
( NP_288776.1 )

cytochrome C biogenesis protein

NC_002655
(Escherichia coli EDL933)

0.0

142) ccmF
( YP_001458995.1 )

cytochrome c-type biogenesis protein CcmF

NC_009800
(Escherichia coli HS)

0.0

143) ccmF
( YP_002387677.1 )

heme lyase, CcmF subunit

NC_011741
(Escherichia coli IAI1)

0.0

144) ccmF
( YP_001879459.1 )

cytochrome c-type biogenesis protein CcmF

NC_010658
(Shigella boydii CDC 3083-94)

0.0

145) ccmF
( YP_002557091.1 )

Cytochrome c-type biogenesis protein ccmF

NC_011993
(Escherichia coli LF82)

0.0

146) NRG857_11145
( YP_006120578.1 )

heme lyase, CcmF subunit

NC_017634
(Escherichia coli NRG 857C)

0.0

147) ccmF
( YP_003365872.1 )

cytochrome C-type biogenesis protein

NC_013716
(Citrobacter rodentium ICC168)

0.0

148) ECSF_2077
( YP_003350067.1 )

cytochrome c-type biogenesis protein

NC_013654
(Escherichia coli SE15)

0.0

149) SSON53_13190
( YP_005457167.1 )

cytochrome c-type biogenesis protein

NC_016822
(Shigella sonnei 53G)

0.0

150) ccmF
( YP_311136.1 )

cytochrome c-type biogenesis protein

NC_007384
(Shigella sonnei Ss046)

0.0

151) EcolC_1454
( YP_001724444.1 )

cytochrome c-type biogenesis protein CcmF

NC_010468
(Escherichia coli ATCC 8739)

0.0

152) ccmF
( YP_402550.1 )

cytochrome c-type biogenesis protein

NC_007606
(Shigella dysenteriae Sd197)

0.0

153) KOX_00290
( YP_005016044.1 )

hypothetical protein

NC_016612
(Klebsiella oxytoca KCTC 1686)

0.0

154) A225_4499
( YP_006500180.1 )

cytochrome c heme lyase subunit CcmF

NC_018106
(Klebsiella oxytoca E718)

0.0

155) ccmF1
( YP_006319741.1 )

cytochrome c-type biogenesis protein CcmF

NC_017910
(Escherichia blattae DSM 4481)

0.0

156) PC1_2419
( YP_003017986.1 )

cytochrome c-type biogenesis protein CcmF

NC_012917
(Pectobacterium carotovorum PC1)

0.0

157) PCC21_025290
( YP_006647185.1 )

Cytochrome c-type biogenesis protein CcmF

NC_018525
(Pectobacterium carotovorum PCC21)

0.0

158) Pat9b_2794
( YP_004116650.1 )

cytochrome c-type biogenesis protein CcmF

NC_014837
(Pantoea sp. At-9b)

0.0

159) M495_17370
( YP_008231405.1 )

heme lyase subunit CcmF

NC_021741
(Serratia liquefaciens ATCC 27592)

0.0

160) SerAS9_3577
( YP_004506947.1 )

cytochrome c-type biogenesis protein CcmF

NC_015567
(Serratia plymuthica AS9)

0.0

161) SerAS12_3578
( YP_004501995.1 )

cytochrome c-type biogenesis protein CcmF

NC_015566
(Serratia sp. AS12)

0.0

162) SerAS13_3579
( YP_006026409.1 )

cytochrome c-type biogenesis protein CcmF

NC_017573
(Serratia sp. AS13)

0.0

163) YE105_C2837
( YP_004299036.1 )

putative cytochrome c-type biogenesis protein

NC_015224
(Yersinia enterocolitica 105.5R(r))

0.0

164) ccmF
( YP_001005589.1 )

putative cytochrome c-type biogenesis protein

NC_008800
(Yersinia enterocolitica 8081)

0.0

165) Y11_01361
( YP_006003635.1 )

cytochrome c heme lyase subunit CcmF

NC_017564
(Yersinia enterocolitica Y11)

0.0

166) ccmF
( YP_008139471.1 )

cytochrome c-type biogenesis protein CcmF

NC_021591
(Serratia odorifera 4Rx13)

0.0

167) M621_17925
( YP_008160364.1 )

heme lyase subunit CcmF

NC_021659
(Serratia plymuthica S13)

0.0

168) ccmF
( YP_003742524.1 )

cytochrome c biogenesis protein

NC_014306
(Erwinia billingiae Eb661)

0.0

169) W5S_2703
( YP_006283660.1 )

Cytochrome c-type biogenesis protein CcmF

NC_017845
(Pectobacterium sp. SCC3193)

0.0

170) Pecwa_2723
( YP_003260084.1 )

cytochrome C biogenesis protein CcmF

NC_013421
(Pectobacterium wasabiae WPP163)

0.0

171) ccmF
( YP_049984.1 )

cytochrome C-type biogenesis protein

NC_004547
(Pectobacterium atrosepticum SCRI1043)

0.0

172) D781_3173
( YP_007345589.1 )

c-type cytochrome biogenesis protein CcmF

NC_020064
(Serratia marcescens FGI94)

0.0

173) Q7S_05730
( YP_005400963.1 )

cytochrome c-type biogenesis protein CcmF

NC_017047
(Rahnella aquatilis HX2)

0.0

174) Rahaq_1199
( YP_004211949.1 )

cytochrome c-type biogenesis protein CcmF

NC_015061
(Rahnella sp. Y9602)

0.0

175) ccmF
( YP_001400371.1 )

cytochrome C biogenesis protein CcmF

NC_009708
(Yersinia pseudotuberculosis IP 31758)

3e-180

176) ccmF
( YP_071154.1 )

cytochrome c-type biogenesis protein

NC_006155
(Yersinia pseudotuberculosis IP 32953)

3e-180

177) YPTS_2741
( YP_001873158.1 )

cytochrome c-type biogenesis protein CcmF

NC_010634
(Yersinia pseudotuberculosis PB1/+)

3e-180

178) YPK_1501
( YP_001720247.1 )

cytochrome c-type biogenesis protein CcmF

NC_010465
(Yersinia pseudotuberculosis YPIII)

3e-180

179) ccmF
( NP_993753.1 )

cytochrome c-type biogenesis protein

NC_005810
(Yersinia pestis 91001)

3e-180

180) A1122_12350
( YP_005522122.1 )

cytochrome c-type biogenesis protein CcmF

NC_017168
(Yersinia pestis A1122)

3e-180

181) ccmF
( YP_001604997.1 )

cytochrome c-type biogenesis protein CcmF

NC_010159
(Yersinia pestis Angola)

3e-180

182) YPA_2105
( YP_652015.1 )

putative cytochrome c-type biogenesis protein

NC_008150
(Yersinia pestis Antiqua)

3e-180

183) ccmF
( YP_002347686.1 )

cytochrome c-type biogenesis protein

NC_003143
(Yersinia pestis CO92)

3e-180

184) ccmF
( YP_005505759.1 )

putative cytochrome c-type biogenesis protein

NC_017154
(Yersinia pestis D106004)

3e-180

185) ccmF
( YP_005509610.1 )

putative cytochrome c-type biogenesis protein

NC_017160
(Yersinia pestis D182038)

3e-180

186) ccmF
( NP_668890.1 )

cytochrome c-type biogenesis protein

NC_004088
(Yersinia pestis KIM)

3e-180

187) YPN_2208
( YP_648136.1 )

cytochrome c-type biogenesis protein

NC_008149
(Yersinia pestis Nepal516)

3e-180

188) YPDSF_2021
( YP_001163375.1 )

cytochrome c-type biogenesis protein

NC_009381
(Yersinia pestis Pestoides F)

3e-180

189) ccmF
( YP_003568735.1 )

putative cytochrome c-type biogenesis protein

NC_014029
(Yersinia pestis Z176003)

3e-180

190) Spro_3386
( YP_001479612.1 )

cytochrome c-type biogenesis protein CcmF

NC_009832
(Serratia proteamaculans 568)

5e-180

191) ESA_00874
( YP_001436980.1 )

hypothetical protein

NC_009778
(Cronobacter sakazakii ATCC BAA-894)

8e-180

192) PAGR_g1326
( YP_005992070.1 )

cytochrome c-type biogenesis protein CcmF

NC_017554
(Pantoea ananatis PA13)

4e-178

193) ccmF
( YP_005934867.1 )

cytochrome c-type biogenesis protein CcmF

NC_017531
(Pantoea ananatis AJ13355)

8e-178

194) ccmF
( YP_005194783.1 )

cytochrome c-type biogenesis protein CcmF

NC_016816
(Pantoea ananatis LMG 5342)

2e-177

195) ccmF
( YP_003520995.1 )

CcmF

NC_013956
(Pantoea ananatis LMG 20103)

5e-177

196) ST548_p3307
( YP_007391291.1 )

Cytochrome c heme lyase subunit CcmF

NC_020181
(Enterobacter aerogenes EA1509E)

1e-176

197) EAE_01225
( YP_004590460.1 )

hypothetical protein

NC_015663
(Enterobacter aerogenes KCTC 2190)

4e-176

198) ccmF
( YP_006342215.1 )

cytochrome c-type biogenesis protein CcmF

NC_017933
(Cronobacter sakazakii ES15)

1e-175

199) ccmF
( YP_003211333.1 )

cytochrome c-type biogenesis protein CcmF

NC_013282
(Cronobacter turicensis z3032)

3e-175

200) CSSP291_04440
( YP_007439774.1 )

cytochrome c-type biogenesis protein CcmF

NC_020260
(Cronobacter sakazakii Sp291)

1e-174

201) ccmF
( YP_007407302.1 )

cytochrome c-type biogenesis protein CcmF

NC_020211
(Serratia marcescens WW4)

1e-174

202) A79E_2179
( YP_006635978.1 )

cytochrome c heme lyase subunit CcmF

NC_018522
(Klebsiella pneumoniae 1084)

1e-173

203) ccmF
( YP_002919847.1 )

cytochrome c-type biogenesis protein

NC_012731
(Klebsiella pneumoniae NTUH-K2044)

1e-173

204) Rahaq2_1273
( YP_005199294.1 )

c-type cytochrome biogenesis protein CcmF

NC_016818
(Rahnella aquatilis CIP 78.65)

4e-172

205) Kvar_2199
( YP_003439128.1 )

cytochrome C biogenesis protein CcmF

NC_013850
(Klebsiella variicola At-22)

6e-172

206) ETAC_11630
( YP_007629807.1 )

Cytochrome c heme lyase subunit CcmF

NC_020796
(Edwardsiella tarda C07-087)

1e-171

207) ccmF
( YP_002238093.1 )

cytochrome c-type biogenesis protein CcmF

NC_011283
(Klebsiella pneumoniae 342)

1e-171

208) D782_2829
( YP_007340968.1 )

c-type cytochrome biogenesis protein CcmF

NC_020063
(Enterobacteriaceae bacterium FGI 57)

2e-171

209) ccmF1
( YP_003296502.1 )

cytochrome c-type biogenesis protein

NC_013508
(Edwardsiella tarda EIB202)

2e-171

210) ccmF
( YP_005699822.1 )

Cytochrome c heme lyase subunit CcmF

NC_017309
(Edwardsiella tarda FL6-60)

2e-171

211) KPN2242_13330
( YP_005955125.1 )

cytochrome c-type biogenesis protein CcmF

NC_017540
(Klebsiella pneumoniae KCTC 2242)

2e-171

212) NT01EI_2764
( YP_002934167.1 )

cytochrome c-type biogenesis protein CcmF, putative

NC_012779
(Edwardsiella ictaluri 93-146)

2e-171

213) ccmF
( YP_003931785.1 )

cytochrome c-type biogenesis protein ccmF

NC_014562
(Pantoea vagans C9-1)

2e-171

214) ccmF
( YP_001335734.1 )

cytochrome c-type biogenesis protein

NC_009648
(Klebsiella pneumoniae subsp. pneumoniae MGH 78578)

3e-171

215) N559_2215
( YP_008425207.1 )

cytochrome C biogenesis protein CcmF

NC_022082
(Klebsiella pneumoniae JM45)

4e-171

216) KPHS_30550
( YP_005227355.1 )

cytochrome c-type biogenesis protein

NC_016845
(Klebsiella pneumoniae HS11286)

5e-171

217) RORB6_04560
( YP_007873157.1 )

cytochrome c-type biogenesis protein

NC_021066
(Raoultella ornithinolytica B6)

4e-170

218) ccmF
( YP_003539424.1 )

cytochrome C-type biogenesis protein

NC_013971
(Erwinia amylovora ATCC 49946)

1e-165

219) ccmF
( YP_003531800.1 )

cytochrome c-type biogenesis protein CcmF

NC_013961
(Erwinia amylovora CFBP1430)

1e-165

220) ccmF
( YP_001907082.1 )

cytochrome c-type biogenesis protein

NC_010694
(Erwinia tasmaniensis Et1/99)

1e-162

221) GU3_13205
( YP_005093144.1 )

cytochrome c-type biogenesis protein CcmF

NC_016745
(Oceanimonas sp. GK1)

2e-162

222) ST548_p6664
( YP_007387934.1 )

Cytochrome c heme lyase subunit CcmF

NC_020181
(Enterobacter aerogenes EA1509E)

8e-160

223) EAE_17485
( YP_004593687.1 )

cytochrome c-type biogenesis protein CcmF

NC_015663
(Enterobacter aerogenes KCTC 2190)

8e-160

224) ccmF
( YP_005820063.1 )

cytochrome c-type biogenesis protein

NC_017445
(Erwinia sp. Ejp617)

2e-159

225) APP7_1418
( YP_001969212.1 )

cytochrome C biogenesis protein CcmF

NC_010939
(Actinobacillus pleuropneumoniae AP76)

1e-158

226) ccmF
( YP_001054056.1 )

cytochrome c-type biogenesis protein CcmF

NC_009053
(Actinobacillus pleuropneumoniae L20)

1e-158

227) CGSHiEE_06595
( YP_001291045.1 )

cytochrome C-type biogenesis protein

NC_009566
(Haemophilus influenzae PittEE)

3e-158

228) HICON_01940
( YP_004139141.1 )

cytochrome C biogenesis protein CcmF

NC_014922
(Haemophilus influenzae F3047)

9e-158

229) ccmF
( NP_439251.1 )

cytochrome C-type biogenesis protein

NC_000907
(Haemophilus influenzae Rd KW20)

9e-158

230) ccmF
( YP_008543883.1 )

cytochrome c maturation heme lyase subunit CcmF

NC_022356
(Haemophilus influenzae KR494)

9e-158

231) ccmF
( YP_001652385.1 )

cytochrome c-type biogenesis protein

NC_010278
(Actinobacillus pleuropneumoniae JL03)

9e-158

232) ccmF
( YP_005802024.1 )

cytochrome c-type biogenesis protein ccmF

NC_017390
(Erwinia pyrifoliae DSM 12163)

2e-157

233) ccmF
( YP_002648219.1 )

cytochrome c-type biogenesis protein

NC_012214
(Erwinia pyrifoliae Ep1/96)

2e-157

234) ccmF
( YP_248763.1 )

cytochrome c-type biogenesis protein CcmF

NC_007146
(Haemophilus influenzae 86-028NP)

2e-157

235) ccmF
( YP_005829691.1 )

cytochrome c maturation heme lyase subunit CcmF

NC_017452
(Haemophilus influenzae R2846)

2e-157

236) ccmF
( YP_005827973.1 )

cytochrome c maturation heme lyase subunit CcmF

NC_017451
(Haemophilus influenzae R2866)

3e-157

237) HIB_12520
( YP_005179277.1 )

heme lyase, CcmF subunit

NC_016809
(Haemophilus influenzae 10810)

3e-157

238) ccmF2
( YP_006320617.1 )

cytochrome c-type biogenesis protein CcmF

NC_017910
(Escherichia blattae DSM 4481)

1e-156

239) HIBPF11730
( YP_004135624.1 )

cytochrome c-type biogenesis protein ccmf

NC_014920
(Haemophilus influenzae F3031)

9e-157

240) ccmF
( YP_001141220.1 )

cytochrome c-type biogenesis protein CcmF

NC_009348
(Aeromonas salmonicida A449)

2e-156

241) ccmF
( YP_005177168.1 )

cytochrome c-type biogenesis protein CcmF

NC_016808
(Pasteurella multocida 36950)

6e-156

242) Asuc_0848
( YP_001344153.1 )

cytochrome c-type biogenesis protein CcmF

NC_009655
(Actinobacillus succinogenes 130Z)

9e-156

243) ccmF
( YP_002476590.1 )

cytochrome c-type biogenesis protein CcmF

NC_011852
(Haemophilus parasuis SH0165)

9e-156

244) NT05HA_0031
( YP_003006566.1 )

cytochrome c-type biogenesis protein CcmF

NC_012913
(Aggregatibacter aphrophilus NJ8700)

1e-155

245) K756_07645
( YP_008124229.1 )

cytochrome c-type biogenesis protein CcmF

NC_021521
(Haemophilus parasuis ZJ0906)

1e-155

246) ccmF
( YP_005363707.1 )

cytochrome c-type biogenesis protein CcmF

NC_017027
(Pasteurella multocida HN06)

4e-155

247) NT08PM_1383
( YP_006240260.1 )

cytochrome c-type biogenesis protein CcmF

NC_017764
(Pasteurella multocida 3480)

5e-155

248) ccmF
( NP_244947.1 )

protein CcmF

NC_002663
(Pasteurella multocida Pm70)

5e-155

249) PARA_00260
( YP_004821727.1 )

heme lyase, CcmF subunit

NC_015964
(Haemophilus parainfluenzae T3T1)

4e-154

250) F382_06640
( YP_008234177.1 )

heme lyase subunit CcmF

NC_021743
(Mannheimia haemolytica D153)

6e-154

251) J450_06785
( YP_008220371.1 )

heme lyase subunit CcmF

NC_021738
(Mannheimia haemolytica D171)

6e-154

252) J451_06870
( YP_008222738.1 )

heme lyase subunit CcmF

NC_021739
(Mannheimia haemolytica D174)

6e-154

253) ccmF1
( YP_007882166.1 )

cytochrome c-type biogenesis protein CcmF

NC_021082
(Mannheimia haemolytica M42548)

6e-154

254) D650_2770
( YP_007665056.1 )

Cytochrome c-type biogenesis protein CcmF

NC_020833
(Mannheimia haemolytica USDA-ARS-USMARC-183)

6e-154

255) D648_23410
( YP_007669851.1 )

Cytochrome c-type biogenesis protein CcmF

NC_020834
(Mannheimia haemolytica USDA-ARS-USMARC-185)

6e-154

256) N220_12835
( YP_008339974.1 )

heme lyase subunit CcmF

NC_021883
(Mannheimia haemolytica USMARC_2286)

6e-154

257) HSM_0723
( YP_001784061.1 )

cytochrome C biogenesis protein CcmF

NC_010519
(Haemophilus somnus 2336)

9e-153

258) WQG_16740
( YP_007548742.1 )

Cytochrome c-type biogenesis protein CcmF

NC_020515
(Bibersteinia trehalosi USDA-ARS-USMARC-192)

1e-152

259) D7S_01940
( YP_006287493.1 )

cytochrome c-type biogenesis protein CcmF

NC_017846
(Aggregatibacter actinomycetemcomitans D7S-1)

3e-152

260) ccmF
( YP_718608.1 )

cytochrome c-type biogenesis protein F

NC_008309
(Haemophilus somnus 129PT)

4e-152

261) UMN179_01741
( YP_004420653.1 )

heme lyase subunit NrfE

NC_015460
(Gallibacterium anatis UMN179)

6e-152

262) ANH9381_0180
( YP_004947962.1 )

cytochrome c-type biogenesis protein CcmF

NC_016513
(Aggregatibacter actinomycetemcomitans ANH9381)

7e-152

263) D11S_1995
( YP_003256568.1 )

cytochrome c-type biogenesis protein CcmF

NC_013416
(Aggregatibacter actinomycetemcomitans D11S-1)

9e-152

264) ccmF
( YP_087798.1 )

CcmF protein

NC_006300
(Mannheimia succiniciproducens MBEL55E)

4e-151

265) amad1_04650
( YP_006975809.1 )

cytochrome c biogenesis factor

NC_019393
(Alteromonas macleodii AltDE1)

4e-150

266) MADE_1004785
( YP_004426101.1 )

heme lyase subunit CcmF

NC_011138
(Alteromonas macleodii Deep ecotype)

4e-150

267) I607_04415
( YP_008170949.1 )

cytochrome c biogenesis factor

NC_021710
(Alteromonas macleodii Ionian Sea U4)

4e-150

268) I876_04625
( YP_008195341.1 )

cytochrome c biogenesis factor

NC_021717
(Alteromonas macleodii Ionian Sea U7)

4e-150

269) I634_04800
( YP_008175092.1 )

cytochrome c biogenesis factor

NC_021712
(Alteromonas macleodii Ionian Sea U8)

4e-150

270) I636_04645
( YP_008182917.1 )

cytochrome c biogenesis factor

NC_021714
(Alteromonas macleodii Ionian Sea UM4b)

4e-150

271) I635_04620
( YP_008178863.1 )

cytochrome c biogenesis factor

NC_021713
(Alteromonas macleodii Ionian Sea UM7)

4e-150

272) K734_05540
( YP_008034605.1 )

cytochrome c biogenesis factor

NC_021286
(Idiomarina loihiensis GSL 199)

1e-148

273) ccmF
( YP_155490.1 )

cytochrome c biogenesis factor

NC_006512
(Idiomarina loihiensis L2TR)

1e-148

274) ASU2_10960
( YP_006818559.1 )

cytochrome c-type biogenesis protein CcmF

NC_018690
(Actinobacillus suis H91-0380)

2e-148

275) ambt_13910
( YP_004468102.1 )

Cytochrome c biogenesis factor

NC_015554
(Alteromonas sp. SN2)

2e-148

276) AMBAS45_04530
( YP_006801865.1 )

Cytochrome c biogenesis factor

NC_018679
(Alteromonas macleodii Balearic Sea AD45)

3e-148

277) AMBLS11_04365
( YP_006823916.1 )

Cytochrome c biogenesis factor

NC_018692
(Alteromonas macleodii Black Sea 11)

7e-148

278) I633_04770
( YP_008191831.1 )

Cytochrome c biogenesis factor

NC_021716
(Alteromonas macleodii English Channel 615)

8e-148

279) ccmF-1
( YP_855937.1 )

cytochrome c-type biogenesis protein CcmF

NC_008570
(Aeromonas hydrophila ATCC 7966)

2e-147

280) AHML_07565
( YP_008042644.1 )

cytochrome c-type biogenesis protein CcmF

NC_021290
(Aeromonas hydrophila ML09-119)

2e-147

281) AMEC673_04380
( YP_006797950.1 )

Cytochrome c biogenesis factor

NC_018678
(Alteromonas macleodii English Channel 673)

3e-147

282) MASE_04260
( YP_006746955.1 )

cytochrome c biogenesis factor

NC_018632
(Alteromonas macleodii ATCC 27126)

6e-147

283) ccmF
( NP_873305.1 )

cytochrome c-type biogenesis protein

NC_002940
(Haemophilus ducreyi 35000HP)

1e-146

284) C427_1613
( YP_007543070.1 )

cytochrome c-type biogenesis protein CcmF

NC_020514
(Glaciecola psychrophila 170)

7e-146

285) Slit_1793
( YP_003524409.1 )

Cytochrome C-type biogenesis protein CcmF

NC_013959
(Sideroxydans lithotrophicus ES-1)

1e-139

286) SCD_n02735
( YP_008547567.1 )

cytochrome c-type biogenesis protein CcmF

NC_022357
(Sulfuricella denitrificans skB26)

7e-139

287) Glaag_1105
( YP_004433334.1 )

cytochrome c-type biogenesis protein CcmF

NC_015497
(Glaciecola sp. 4H-3-7+YE-5)

1e-138

288) ccmF
( NP_840842.1 )

cytochrome c-type biogenesis protein (CcmF)

NC_004757
(Nitrosomonas europaea ATCC 19718)

2e-138

289) B565_1132
( YP_004391784.1 )

cytochrome c heme lyase subunit CcmF

NC_015424
(Aeromonas veronii B565)

4e-138

290) M301_0446
( YP_003673407.1 )

cytochrome c-type biogenesis protein CcmF

NC_014207
(Methylotenera versatilis 301)

1e-137

291) ccmF
( YP_004872584.1 )

cytochrome c biogenesis factor

NC_016041
(Glaciecola nitratireducens FR1064)

3e-137

292) ccmF
( YP_006557389.1 )

cytochrome c-type biogenesis protein CcmF

NC_018268
(Marinobacter sp. BSs20148)

6e-137

293) Metme_2346
( YP_004513246.1 )

cytochrome c-type biogenesis protein CcmF

NC_015572
(Methylomonas methanica MC09)

2e-136

294) Patl_3251
( YP_662811.1 )

cytochrome c-type biogenesis protein CcmF

NC_008228
(Pseudoalteromonas atlantica T6c)

2e-136

295) Nmul_A1209
( YP_411904.1 )

cytochrome c-type biogenesis protein CcmF

NC_007614
(Nitrosospira multiformis ATCC 25196)

3e-135

296) ccmF
( YP_003812068.1 )

cytochrome c-type biogenesis protein

NC_014366
(gamma proteobacterium HdN1)

7e-134

297) Neut_1638
( YP_747846.1 )

cytochrome c-type biogenesis protein CcmF

NC_008344
(Nitrosomonas eutropha C91)

1e-133

298) ccmF
( YP_005437051.1 )

cytochrome c-type biogenesis protein CcmF

NC_017075
(Rubrivivax gelatinosus IL144)

2e-133

299) NAL212_1562
( YP_004294605.1 )

cytochrome c-type biogenesis protein CcmF

NC_015222
(Nitrosomonas sp. AL212)

6e-133

300) Pnuc_1513
( YP_001156291.1 )

cytochrome c-type biogenesis protein CcmF

NC_009379
(Polynucleobacter necessarius QLW-P1DMWA-1)

1e-132

301) PCNPT3_10435
( YP_007640863.1 )

cytochrome c-type biogenesis protein CcmF

NC_020802
(Psychromonas sp. CNPT3)

7e-132

302) H681_09165
( YP_007657247.1 )

cytochrome c-type biogenesis protein CcmF

NC_020829
(Pseudomonas denitrificans ATCC 13867)

1e-131

303) Maqu_1955
( YP_959223.1 )

cytochrome c-type biogenesis protein CcmF

NC_008740
(Marinobacter aquaeolei VT8)

1e-131

304) ccmF
( YP_005429251.1 )

cytochrome c-type biogenesis protein ccmF

NC_017067
(Marinobacter hydrocarbonoclasticus ATCC 49840)

2e-131

305) Neut_0059
( YP_746312.1 )

cytochrome c-type biogenesis protein CcmF

NC_008344
(Nitrosomonas eutropha C91)

4e-131

306) Lcho_1549
( YP_001790582.1 )

cytochrome c-type biogenesis protein CcmF

NC_010524
(Leptothrix cholodnii SP-6)

2e-130

307) H045_05165
( YP_007396605.1 )

cytochrome c-type biogenesis protein CcmF

NC_020209
(Pseudomonas poae RE*1-1-14)

3e-129

308) ccmF
( YP_267784.1 )

cytochrome c-type biogenesis protein CcmF

NC_003910
(Colwellia psychrerythraea 34H)

5e-129

309) Sama_0248
( YP_926129.1 )

cytochrome c-type biogenesis protein CcmF

NC_008700
(Shewanella amazonensis SB2B)

7e-129

310) ccmF
( YP_003558876.1 )

cytochrome c-type biogenesis protein CcmF

NC_014012
(Shewanella violacea DSS12)

1e-128

311) ccmF
( YP_007030832.1 )

cytochrome c-type biogenesis protein

NC_019670
(Pseudomonas sp. UW4)

2e-128

312) Kkor_0983
( YP_003146171.1 )

cytochrome c-type biogenesis protein CcmF

NC_013166
(Kangiella koreensis DSM 16069)

4e-128

313) D521_1538
( YP_007502841.1 )

Cytochrome c-type biogenesis protein CcmF

NC_020417
(beta proteobacterium CB CB)

7e-127

314) PSEBR_a1515
( YP_004352715.1 )

cytochrome C-type biogenesis protein

NC_015379
(Pseudomonas brassicacearum NFM421)

2e-126

315) ccmF
( YP_005207022.1 )

protein CcmF

NC_016830
(Pseudomonas fluorescens F113)

2e-126

316) Maqu_1411
( YP_958685.1 )

cytochrome c-type biogenesis protein CcmF

NC_008740
(Marinobacter aquaeolei VT8)

2e-126

317) Shew_0193
( YP_001092324.1 )

cytochrome c-type biogenesis protein CcmF

NC_009092
(Shewanella loihica PV-4)

3e-126

318) HP15_2281
( YP_005885973.1 )

cytochrome c assembly protein

NC_017506
(Marinobacter adhaerens HP15)

4e-126

319) cycK
( YP_004917773.1 )

cytochrome c-type biogenesis heme lyase CycK

NC_016112
(Methylomicrobium alcaliphilum 20Z)

5e-126

320) Nhal_0852
( YP_003526415.1 )

cytochrome C biogenesis protein CcmF

NC_013960
(Nitrosococcus halophilus Nc 4)

5e-126

321) ccmF
( YP_584536.1 )

heme lyase, CcmF subunit

NC_007973
(Cupriavidus metallidurans CH34)

1e-125

322) Ping_3019
( YP_944320.1 )

cytochrome c-type biogenesis protein CcmF

NC_008709
(Psychromonas ingrahamii 37)

8e-126

323) ccmF
( YP_435495.1 )

cytochrome c-type biogenesis protein CcmF

NC_007645
(Hahella chejuensis KCTC 2396)

9e-126

324) swp_2046
( YP_002311389.1 )

Cytochrome c-type biogenesis protein CcmF

NC_011566
(Shewanella piezotolerans WP3)

2e-125

325) Shal_4101
( YP_001676300.1 )

cytochrome c-type biogenesis protein CcmF

NC_010334
(Shewanella halifaxensis HAW-EB4)

2e-125

326) ccmF
( YP_003073367.1 )

cytochrome C biogenesis protein CcmF

NC_012997
(Teredinibacter turnerae T7901)

5e-125

327) PT7_1838
( YP_004417002.1 )

cytochrome c-type biogenesis protein CcmF

NC_015458
(Pusillimonas sp. T7-7)

6e-125

328) ccmF
( YP_008104299.1 )

cytochrome c-type biogenesis protein CcmF

NC_021499
(Pseudomonas resinovorans NBRC 106553)

1e-124

329) Pfl01_1582
( YP_347314.1 )

cytochrome c-type biogenesis protein CcmF

NC_007492
(Pseudomonas fluorescens Pf0-1)

1e-124

330) MDS_1887
( YP_004379670.1 )

cytochrome c-type biogenesis protein CcmF

NC_015410
(Pseudomonas mendocina NK-01)

2e-124

331) ccmF
( YP_006323311.1 )

cytochrome c-type biogenesis protein CcmF

NC_017911
(Pseudomonas fluorescens A506)

2e-124

332) ccmF
( NP_793406.1 )

cytochrome c-type biogenesis protein CcmF

NC_004578
(Pseudomonas syringae DC3000)

3e-124

333) Sden_3566
( YP_564564.1 )

cytochrome c-type biogenesis protein CcmF

NC_007954
(Shewanella denitrificans OS217)

6e-124

334) ccmF
( YP_006820174.1 )

cytochrome c-type biogenesis protein CcmF

NC_018691
(Alcanivorax dieselolei B5)

3e-123

335) ccmF
( YP_002871400.1 )

cytochrome C biogenesis protein

NC_012660
(Pseudomonas fluorescens SBW25)

4e-123

336) Pmen_2786
( YP_001188273.1 )

cytochrome c-type biogenesis protein CcmF

NC_009439
(Pseudomonas mendocina ymp)

8e-123

337) Nit79A3_1272
( YP_004694512.1 )

cytochrome c-type biogenesis protein CcmF

NC_015731
(Nitrosomonas sp. Is79A3)

2e-122

338) Sbal175_4013
( YP_006022541.1 )

cytochrome c-type biogenesis protein CcmF

NC_017571
(Shewanella baltica BA175)

2e-122

339) Sbal117_0333
( YP_006035627.1 )

cytochrome c-type biogenesis protein CcmF

NC_017579
(Shewanella baltica OS117)

2e-122

340) Sbal_0231
( YP_001048634.1 )

cytochrome c-type biogenesis protein CcmF

NC_009052
(Shewanella baltica OS155)

2e-122

341) Shew185_0231
( YP_001364465.1 )

cytochrome c-type biogenesis protein CcmF

NC_009665
(Shewanella baltica OS185)

2e-122

342) Sbal195_0234
( YP_001552676.1 )

cytochrome c-type biogenesis protein CcmF

NC_009997
(Shewanella baltica OS195)

2e-122

343) Sbal678_0240
( YP_005271493.1 )

cytochrome c-type biogenesis protein CcmF

NC_016901
(Shewanella baltica OS678)

2e-122

344) PPS_4053
( YP_004703474.1 )

cytochrome c-type biogenesis protein CcmF

NC_015733
(Pseudomonas putida S16)

3e-122

345) G655_17820
( YP_007710404.1 )

cytochrome c-type biogenesis protein CcmF

NC_020912
(Pseudomonas aeruginosa B136-33)

1e-121

346) PADK2_18325
( YP_006483642.1 )

cytochrome c-type biogenesis protein CcmF

NC_018080
(Pseudomonas aeruginosa DK2)

1e-121

347) ccmF
( YP_005976235.1 )

cytochrome C-type biogenesis protein CcmF

NC_017548
(Pseudomonas aeruginosa M18)

1e-121

348) ccmF
( NP_250171.1 )

cytochrome C biogenesis protein CcmF

NC_002516
(Pseudomonas aeruginosa PAO1)

1e-121

349) M062_07920
( YP_008132029.1 )

heme lyase subunit CcmF

NC_021577
(Pseudomonas aeruginosa RP73)

1e-121

350) ccmF
( YP_791774.1 )

cytochrome C-type biogenesis protein CcmF

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

1e-121

351) ccmF
( YP_002441516.1 )

cytochrome C-type biogenesis protein CcmF

NC_011770
(Pseudomonas aeruginosa LESB58)

6e-122

352) ccmF
( YP_005980607.1 )

cytochrome c-type biogenesis protein

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

7e-122

353) Sbal223_4021
( YP_002359917.1 )

cytochrome c-type biogenesis protein CcmF

NC_011663
(Shewanella baltica OS223)

7e-122

354) ccmF
( YP_001349201.1 )

cytochrome c-type biogenesis protein CcmF

NC_009656
(Pseudomonas aeruginosa PA7)

9e-122

355) Daro_3996
( YP_287193.1 )

cytochrome c-type biogenesis protein CcmF

NC_007298
(Dechloromonas aromatica RCB)

2e-121

356) Pnec_1378
( YP_001798098.1 )

cytochrome c-type biogenesis protein CcmF

NC_010531
(Polynucleobacter necessarius STIR1)

2e-121

357) Dsui_1172
( YP_005027415.1 )

c-type cytochrome biogenesis protein CcmF

NC_016616
(Dechlorosoma suillum PS)

3e-121

358) Shewana3_0234
( YP_867884.1 )

cytochrome c-type biogenesis protein CcmF

NC_008577
(Shewanella sp. ANA-3)

4e-121

359) ccmF
( YP_275468.1 )

cytochrome c-type biogenesis protein CcmF

NC_005773
(Pseudomonas syringae 1448A)

6e-121

360) A458_13515
( YP_006458357.1 )

cytochrome c-type biogenesis protein CcmF

NC_018028
(Pseudomonas stutzeri CCUG 29243)

6e-121

361) ccmF
( YP_001173042.1 )

cytochrome C-type biogenesis protein CcmF

NC_009434
(Pseudomonas stutzeri A1501)

1e-120

362) ccmF
( YP_004714902.1 )

cytochrome C-type biogenesis protein CcmF

NC_015740
(Pseudomonas stutzeri ATCC 17588)

1e-120

363) ccmF
( YP_005939281.1 )

cytochrome C-type biogenesis protein CcmF

NC_017532
(Pseudomonas stutzeri DSM 4166)

1e-120

364) ccmF
( YP_007681750.1 )

heme lyase, subunit CcmF

NC_020888
(Thalassolituus oleivorans MIL-1)

1e-120

365) Psest_1759
( YP_007239938.1 )

c-type cytochrome biogenesis protein CcmF

NC_019936
(Pseudomonas stutzeri RCH2)

2e-120

366) Hhal_1369
( YP_001002938.1 )

cytochrome c-type biogenesis protein CcmF

NC_008789
(Halorhodospira halophila SL1)

4e-120

367) ccmF
( NP_715906.1 )

cytochrome c synthetase cytochrome b containing quinol-haem oxidoreductase subunit CcmF

NC_004347
(Shewanella oneidensis MR-1)

5e-120

368) Galf_1768
( YP_003847543.1 )

cytochrome c-type biogenesis protein CcmF

NC_014394
(Gallionella capsiferriformans ES-2)

2e-119

369) Nwat_0811
( YP_003760084.1 )

cytochrome c-type biogenesis protein CcmF

NC_014315
(Nitrosococcus watsonii C-113)

3e-119

370) M5M_00265
( YP_006915020.1 )

cytochrome c-type biogenesis protein CcmF

NC_018868
(Simiduia agarivorans SA1)

3e-119

371) ccmF
( YP_007549637.1 )

cytochrome c-type biogenesis protein

NC_020516
(Azoarcus sp. KH32C)

2e-118

372) Noc_0943
( YP_342985.1 )

cytochrome c-type biogenesis protein CcmF

NC_007484
(Nitrosococcus oceani ATCC 19707)

5e-118

373) Psefu_1961
( YP_004474028.1 )

cytochrome c-type biogenesis protein CcmF

NC_015556
(Pseudomonas fulva 12-X)

5e-118

374) PputGB1_3891
( YP_001670117.1 )

cytochrome c-type biogenesis protein CcmF

NC_010322
(Pseudomonas putida GB-1)

1e-117

375) Ssed_4284
( YP_001476016.1 )

cytochrome c-type biogenesis protein CcmF

NC_009831
(Shewanella sediminis HAW-EB3)

2e-117

376) ccmF
( YP_692556.1 )

cytochrome c-type biogenesis protein CcmF

NC_008260
(Alcanivorax borkumensis SK2)

9e-118

377) Shewmr4_0234
( YP_732372.1 )

cytochrome c-type biogenesis protein CcmF

NC_008321
(Shewanella sp. MR-4)

2e-117

378) ccmF
( YP_003455435.1 )

cytochrome C-type biogenesis protein CcmF

NC_013861
(Legionella longbeachae NSW150)

3e-117

379) Shewmr7_0229
( YP_736291.1 )

cytochrome c-type biogenesis protein CcmF

NC_008322
(Shewanella sp. MR-7)

3e-117

380) Spea_0218
( YP_001500081.1 )

cytochrome c-type biogenesis protein CcmF

NC_009901
(Shewanella pealeana ATCC 700345)

4e-117

381) ccmF
( YP_003898794.1 )

cytochrome C biogenesis protein CcmF

NC_014532
(Halomonas elongata DSM 2581)

8e-117

382) ccmF
( YP_003618140.1 )

cytochrome c-type biogenesis protein CcmF

NC_014125
(Legionella pneumophila 2300/99 Alcoy)

9e-117

383) ccmF
( YP_001982529.1 )

cytochrome c-type biogenesis protein CcmF

NC_010995
(Cellvibrio japonicus Ueda107)

2e-116

384) Swoo_4656
( YP_001763001.1 )

cytochrome c-type biogenesis protein CcmF

NC_010506
(Shewanella woodyi ATCC 51908)

2e-116

385) Sfri_0182
( YP_748883.1 )

cytochrome c-type biogenesis protein CcmF

NC_008345
(Shewanella frigidimarina NCIMB 400)

3e-116

386) Pcryo_1348
( YP_580613.1 )

cytochrome c-type biogenesis protein CcmF

NC_007969
(Psychrobacter cryohalolentis K5)

4e-116

387) PSYCG_07095
( YP_008163289.1 )

heme lyase subunit CcmF

NC_021661
(Psychrobacter sp. G)

4e-116

388) ccmF
( YP_935432.1 )

cytochrome c-type biogenesis protein CcmF

NC_008702
(Azoarcus sp. BH72)

1e-115

389) Sputcn32_3724
( YP_001185231.1 )

cytochrome c-type biogenesis protein CcmF

NC_009438
(Shewanella putrefaciens CN-32)

1e-115

390) Sputw3181_0191
( YP_961597.1 )

cytochrome c-type biogenesis protein CcmF

NC_008750
(Shewanella sp. W3-18-1)

1e-115

391) Fbal_0303
( YP_003911591.1 )

cytochrome C biogenesis protein CcmF

NC_014541
(Ferrimonas balearica DSM 9799)

6e-116

392) Sde_1871
( YP_527343.1 )

cytochrome c-type biogenesis protein CcmF

NC_007912
(Saccharophagus degradans 2-40)

1e-115

393) Sput200_0199
( YP_006008154.1 )

cytochrome c-type biogenesis protein CcmF

NC_017566
(Shewanella putrefaciens 200)

1e-115

394) ccmF
( YP_003627393.1 )

cytochrome c-type biogenesis protein CcmF

NC_014147
(Moraxella catarrhalis RH4)

1e-114

395) ccmF
( YP_006508076.1 )

heme lyase, CcmF subunit

NC_018140
(Legionella pneumophila HL06041035)

2e-114

396) ccmF
( YP_123251.1 )

cytochrome C-type biogenesis protein CcmF

NC_006368
(Legionella pneumophila Paris)

2e-114

397) LPE509_02352
( YP_007568895.1 )

Cytochrome c heme lyase subunit CcmF

NC_020521
(Legionella pneumophila Philadelphia 1)

2e-114

398) ccmF
( YP_094896.1 )

cytochrome C biogenesis protein CcmF

NC_002942
(Legionella pneumophila Philadelphia 1)

2e-114

399) PsycPRwf_0802
( YP_001279704.1 )

cytochrome c-type biogenesis protein CcmF

NC_009524
(Psychrobacter sp. PRwf-1)

3e-114

400) Mpe_A1211
( YP_001020408.1 )

cytochrome c-type biogenesis protein CcmF

NC_008825
(Methylibium petroleiphilum PM1)

8e-114

401) ccmF
( YP_006504957.1 )

heme lyase, CcmF subunit

NC_018139
(Legionella pneumophila Lorraine)

8e-114

402) Thivi_3067
( YP_006415072.1 )

c-type cytochrome biogenesis protein CcmF

NC_018012
(Thiocystis violascens DSM 198)

1e-113

403) ccmF
( YP_126251.1 )

cytochrome C-type biogenesis protein CcmF

NC_006369
(Legionella pneumophila Lens)

2e-113

404) PputW619_3648
( YP_001750499.1 )

cytochrome c-type biogenesis protein CcmF

NC_010501
(Pseudomonas putida W619)

3e-113

405) lp12_0883
( YP_005185252.1 )

cytochrome c-type biogenesis protein CcmF

NC_016811
(Legionella pneumophila ATCC 43290)

3e-113

406) ccmF
( YP_008062567.1 )

cytochrome c-type biogenesis protein CcmF

NC_021350
(Legionella pneumophila Thunder Bay)

3e-113

407) ccmF
( YP_001251700.1 )

cytochrome c-type biogenesis protein CcmF

NC_009494
(Legionella pneumophila Corby)

8e-113

408) Rfer_0040
( YP_521333.1 )

cytochrome c-type biogenesis protein CcmF

NC_007908
(Rhodoferax ferrireducens T118)

3e-112

409) PPS_3724
( YP_004703145.1 )

cytochrome c-type biogenesis protein CcmF

NC_015733
(Pseudomonas putida S16)

4e-112

410) ccmF
( YP_159010.1 )

cytochrome c-type biogenesis protein

NC_006513
(Aromatoleum aromaticum EbN1)

4e-112

411) B479_18470
( YP_007230529.1 )

cytochrome c-type biogenesis protein CcmF

NC_019905
(Pseudomonas putida PC9)

5e-112

412) ccmF
( YP_112949.1 )

cytochrome c-type biogenesis protein CcmF

NC_002977
(Methylococcus capsulatus Bath)

5e-112

413) Tmz1t_3999
( YP_002890959.1 )

cytochrome C biogenesis protein CcmF

NC_011662
(Thauera sp. MZ1T)

7e-112

414) Thimo_1353
( YP_007243777.1 )

c-type cytochrome biogenesis protein CcmF

NC_019940
(Thioflavicoccus mobilis 8321)

1e-111

415) ccmF
( YP_008041077.1 )

cytochrome c-type biogenesis protein CcmF

NC_021289
(Burkholderia sp. RPE64)

1e-110

416) ccmF
( YP_001352631.1 )

cytochrome C-type biogenesis protein CcmF

NC_009659
(Janthinobacterium sp. Marseille)

9e-111

417) ccmF
( YP_005044060.1 )

cytochrome c-type biogenesis protein CcmF

NC_016626
(Burkholderia sp. YI23)

1e-110

418) Alvin_2179
( YP_003444132.1 )

cytochrome c-type biogenesis protein CcmF

NC_013851
(Allochromatium vinosum DSM 180)

4e-110

419) PSJM300_06020
( YP_006523636.1 )

cytochrome c-type biogenesis protein CcmF

NC_018177
(Pseudomonas stutzeri DSM 10701)

1e-109

420) R2APBS1_2397
( YP_007590728.1 )

c-type cytochrome biogenesis protein CcmF

NC_020541
(Rhodanobacter sp. 2APBS1)

1e-109

421) TVNIR_0268
( YP_007215460.1 )

Cytochrome c heme lyase subunit CcmF

NC_019902
(Thioalkalivibrio nitratireducens DSM 14787)

2e-109

422) ccmF [H]
( YP_007215453.1 )

Cytochrome c heme lyase subunit CcmF

NC_019902
(Thioalkalivibrio nitratireducens DSM 14787)

3e-109

423) ccmF
( YP_586193.1 )

cytochrome C biogenesis protein CcmF

NC_007974
(Cupriavidus metallidurans CH34)

5e-109

424) Rmag_0272
( YP_903525.1 )

cytochrome c-type biogenesis protein CcmF

NC_008610
(Candidatus Ruthia magnifica Cm)

1e-108

425) ccmF
( NP_942856.1 )

cytochrome C biogenesis protein

NC_005241
(Ralstonia eutropha H16)

5e-108

426) CAP2UW1_0723
( YP_003165998.1 )

cytochrome c-type biogenesis protein CcmF

NC_013194
(Candidatus Accumulibacter phosphatis UW-1)

2e-107

427) Mmwyl1_3410
( YP_001342248.1 )

cytochrome c-type biogenesis protein CcmF

NC_009654
(Marinomonas sp. MWYL1)

3e-107

428) ccmF
( YP_001219111.1 )

cytochrome c-type biogenesis protein CcmF

NC_009465
(Candidatus Vesicomyosocius okutanii HA)

9e-107

429) ccmF
( YP_003978480.1 )

cytochrome C biogenesis protein CcmF

NC_014640
(Achromobacter xylosoxidans A8)

2e-106

430) Mlg_1687
( YP_742523.1 )

cytochrome c-type biogenesis protein CcmF

NC_008340
(Alkalilimnicola ehrlichii MLHE-1)

3e-106

431) S58_30860
( YP_007512673.1 )

heme lyase, CcmF subunit

NC_020453
(Bradyrhizobium oligotrophicum S58)

3e-106

432) NH44784_040651
( YP_008031131.1 )

Cytochrome c heme lyase subunit CcmF

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

4e-106

433) NH44784_040501
( YP_008031116.1 )

Cytochrome c heme lyase subunit CcmF

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

8e-106

434) Rsph17025_1169
( YP_001167375.1 )

cytochrome c-type biogenesis protein CcmF

NC_009428
(Rhodobacter sphaeroides ATCC 17025)

8e-106

435) ccmF
( YP_001632686.1 )

cytochrome c-type biogenesis protein CcmF

NC_010170
(Bordetella petrii DSM 12804)

1e-105

436) amb4200
( YP_423563.1 )

cytochrome c biogenesis factor

NC_007626
(Magnetospirillum magneticum AMB-1)

2e-105

437) L483_23925
( YP_008096546.1 )

heme lyase subunit CcmF

NC_021491
(Pseudomonas putida H8234)

2e-103

438) join
( YP_007217168.1 )

cytochrome c-type biogenesis protein CcmF

NC_019902
(Thioalkalivibrio nitratireducens DSM 14787)

2e-103

439) PPUBIRD1_1529
( YP_005929406.1 )

Cytochrome c-type biogenesis protein ccmF

NC_017530
(Pseudomonas putida BIRD-1)

3e-103

440) ccmF
( YP_008112481.1 )

cytochrome c-type biogenesis protein CcmF

NC_021505
(Pseudomonas putida NBRC 14164)

3e-103

441) ccmF
( YP_609280.1 )

periplasmic cytochrome c-type biogenesis protein CcmF

NC_008027
(Pseudomonas entomophila L48)

4e-103

442) cycK
( YP_006532725.1 )

Cytochrome c-type biogenesis protein ccmF

NC_018220
(Pseudomonas putida DOT-T1E)

7e-103

443) ccmF
( NP_746437.1 )

cytochrome C biogenesis protein CcmF

NC_002947
(Pseudomonas putida KT2440)

7e-103

444) Pput_1545
( YP_001266886.1 )

cytochrome c-type biogenesis protein CcmF

NC_009512
(Pseudomonas putida F1)

7e-103

445) YSA_08181
( YP_006388309.1 )

cytochrome c-type biogenesis protein CcmF

NC_017986
(Pseudomonas putida ND6)

7e-103

446) cycK
( NP_642645.1 )

C-type cytochrome biogenesis membrane protein

NC_003919
(Xanthomonas axonopodis 306)

1e-102

447) XAC29_11800
( YP_007636778.1 )

c-type cytochrome biogenesis membrane protein

NC_020800
(Xanthomonas axonopodis Xac29-1)

1e-102

448) ccmF
( YP_007649982.1 )

Cytochrome c biogenesis factor

NC_020815
(Xanthomonas citri Aw12879)

9e-103

449) Fraau_1053
( YP_005377196.1 )

c-type cytochrome biogenesis protein CcmF

NC_017033
(Frateuria aurantia DSM 6220)

4e-102

450) ccmF2
( YP_364258.1 )

C-type cytochrome biogenesis membrane protein CcmF

NC_007508
(Xanthomonas campestris 85-10)

4e-101

451) ccmF2
( YP_004851897.1 )

C-type cytochrome biogenesis membrane protein CcmF

NC_016010
(Xanthomonas axonopodis F1)

1e-100

452) cycK
( YP_004676154.1 )

cytochrome c-type biogenesis heme lyase CycK

NC_015717
(Hyphomicrobium sp. MC1)

1e-100

453) ccmF
( YP_005795496.1 )

cytochrome c biogenesis factor

NC_017384
(Ketogulonicigenium vulgare WSH-001)

9e-100

454) D7S_01950
( YP_006287503.1 )

cytochrome c-type biogenesis protein CcmF

NC_017846
(Aggregatibacter actinomycetemcomitans D7S-1)

1e-99

455) PARA_00840
( YP_004821785.1 )

hypothetical protein

NC_015964
(Haemophilus parainfluenzae T3T1)

2e-99

456) ccmF
( YP_004691374.1 )

cytochrome c-type biogenesis protein CcmF

NC_015730
(Roseobacter litoralis Och 149)

8e-99

457) D11S_1984
( YP_003256557.1 )

cytochrome c-type biogenesis protein CcmF

NC_013416
(Aggregatibacter actinomycetemcomitans D11S-1)

8e-99

458) ccmF
( YP_006562926.1 )

cytochrome c-type biogenesis protein CcmF

NC_018286
(Phaeobacter gallaeciensis 2.10)

2e-98

459) ccmF
( YP_264843.1 )

cytochrome c-type biogenesis protein

NC_007204
(Psychrobacter arcticus 273-4)

2e-98

460) ccmF
( YP_007704461.1 )

cytochrome c-type biogenesis protein CcmF

NC_020911
(Octadecabacter antarcticus 307)

2e-98

461) KKY_2811
( YP_004900567.1 )

cytochrome c heme lyase subunit CcmF

NC_016078
(Pelagibacterium halotolerans B2)

2e-98

462) ccmF2
( YP_003375788.1 )

cytochrome C-type biogenesis protein ccmf

NC_013722
(Xanthomonas albilineans GPE PC73)

3e-98

463) Rru_A0035
( YP_425127.1 )

cytochrome C biogenesis protein CcmF

NC_007643
(Rhodospirillum rubrum ATCC 11170)

3e-98

464) F11_00180
( YP_006046304.1 )

cytochrome c-type biogenesis protein CcmF

NC_017584
(Rhodospirillum rubrum F11)

3e-98

465) ccmF
( YP_006966693.1 )

cytochrome C-type biogenesis protein

NC_019382
(Bordetella bronchiseptica 253)

4e-98

466) ccmF
( YP_003579267.1 )

cytochrome c-type biogenesis protein CcmF

NC_014034
(Rhodobacter capsulatus SB 1003)

4e-98

467) cycK
( YP_683411.1 )

cytochrome c-type biogenesis protein

NC_008209
(Roseobacter denitrificans OCh 114)

4e-98

468) Pcryo_1743
( YP_581004.1 )

cytochrome c-type biogenesis protein CcmF

NC_007969
(Psychrobacter cryohalolentis K5)

5e-98

469) ANH9381_0168
( YP_004947950.1 )

cytochrome c-type biogenesis protein CcmF

NC_016513
(Aggregatibacter actinomycetemcomitans ANH9381)

8e-98

470) ccmF
( YP_006573121.1 )

cytochrome c-type biogenesis protein CcmF

NC_018290
(Phaeobacter gallaeciensis DSM 17395)

2e-97

471) PSYCG_09010
( YP_008163666.1 )

heme lyase subunit CcmF

NC_021661
(Psychrobacter sp. G)

7e-97

472) ccmF
( YP_007019996.1 )

cytochrome c-type biogenesis protein CcmF

NC_019566
(Candidatus Endolissoclinum faulkneri L2)

1e-96

473) ccmF
( NP_884910.1 )

cytochrome C-type biogenesis protein

NC_002928
(Bordetella parapertussis 12822)

3e-96

474) cycK
( YP_005029855.1 )

cytochrome c-type biogenesis protein cycK

NC_016617
(Azospirillum brasilense Sp245)

3e-96

475) NT05HA_0041
( YP_003006576.1 )

cytochrome c-type biogenesis protein CcmF

NC_012913
(Aggregatibacter aphrophilus NJ8700)

3e-96

476) A11S_1728
( YP_007643150.1 )

Cytochrome c heme lyase subunit CcmF

NC_020812
(Micavibrio aeruginosavorus EPB)

4e-96

477) JCM7686_2105
( YP_008404973.1 )

cytochrome c-type biogenesis protein

NC_022041
(Paracoccus aminophilus JCM 7686)

4e-96

478) ccmF1
( YP_363443.1 )

C-type cytochrome biogenesis membrane protein CcmF

NC_007508
(Xanthomonas campestris 85-10)

7e-96

479) ccmF
( YP_008393158.1 )

cytochrome c-type biogenesis protein CcmF

NC_021991
(Acetobacter pasteurianus 386B)

7e-96

480) cysK
( YP_003187423.1 )

cytochrome C biogenesis protein CysK

NC_013209
(Acetobacter pasteurianus IFO 3283)

1e-95

481) cysK
( YP_005477489.1 )

cytochrome c-type biogenesis protein CysK

NC_017100
(Acetobacter pasteurianus IFO 3283)

1e-95

482) cysK
( YP_005480655.1 )

cytochrome c-type biogenesis protein CysK

NC_017108
(Acetobacter pasteurianus IFO 3283)

1e-95

483) cysK
( YP_005483345.1 )

cytochrome c-type biogenesis protein CysK

NC_017111
(Acetobacter pasteurianus IFO 3283)

1e-95

484) cysK
( YP_005486630.1 )

cytochrome c-type biogenesis protein CysK

NC_017121
(Acetobacter pasteurianus IFO 3283)

1e-95

485) cysK
( YP_005489435.1 )

cytochrome c-type biogenesis protein CysK

NC_017125
(Acetobacter pasteurianus IFO 3283)

1e-95

486) cysK
( YP_005498537.1 )

cytochrome c-type biogenesis protein CysK

NC_017146
(Acetobacter pasteurianus IFO 3283)

1e-95

487) cysK
( YP_005501403.1 )

cytochrome c-type biogenesis protein CysK

NC_017150
(Acetobacter pasteurianus IFO 3283)

1e-95

488) ccmF
( YP_006900572.1 )

cytochrome C-type biogenesis protein

NC_018829
(Bordetella bronchiseptica MO149)

3e-95

489) ccmF
( NP_889344.1 )

cytochrome C-type biogenesis protein

NC_002927
(Bordetella bronchiseptica RB50)

3e-95

490) ccmF
( YP_006896451.1 )

cytochrome C-type biogenesis protein

NC_018828
(Bordetella parapertussis Bpp5)

3e-95

491) Spea_0478
( YP_001500341.1 )

cytochrome c-type biogenesis protein CcmF

NC_009901
(Shewanella pealeana ATCC 700345)

3e-95

492) Mmar10_1659
( YP_756889.1 )

cytochrome c assembly protein

NC_008347
(Maricaulis maris MCS10)

4e-95

493) PSE_2481
( YP_005081011.1 )

Cytochrome c assembly protein

NC_016642
(Pseudovibrio sp. FO-BEG1)

5e-95

494) SL003B_2907
( YP_004304634.1 )

cytochrome c-type biogenesis transmembrane protein

NC_015259
(Polymorphum gilvum SL003B-26A1)

1e-94

495) cycK
( YP_001534745.1 )

cytochrome c-type biogenesis protein CycK

NC_009952
(Dinoroseobacter shibae DFL 12)

8e-95

496) Asuc_0708
( YP_001344016.1 )

cytochrome c-type biogenesis protein CcmF

NC_009655
(Actinobacillus succinogenes 130Z)

1e-94

497) KKY_784
( YP_004898573.1 )

cytochrome c heme lyase subunit CcmF

NC_016078
(Pelagibacterium halotolerans B2)

3e-94

498) ASU2_01065
( YP_006816594.1 )

cytochrome c-type biogenesis protein

NC_018690
(Actinobacillus suis H91-0380)

3e-94

499) TM1040_1127
( YP_613122.1 )

cytochrome c-type biogenesis protein CcmF

NC_008044
(Ruegeria sp. TM1040)

9e-94

500) B932_0385
( YP_006982924.1 )

cytochrome c-type biogenesis protein CysK

NC_019396
(Gluconobacter oxydans H24)

9e-94

501) nfrE
( YP_001652070.1 )

cytochrome c-type biogenesis protein

NC_010278
(Actinobacillus pleuropneumoniae JL03)

9e-94

502) APP7_1108
( YP_001968902.1 )

cytochrome C biogenesis protein NrfE

NC_010939
(Actinobacillus pleuropneumoniae AP76)

1e-93

503) ccmF
( YP_005950509.1 )

cytochrome c-type biogenesis protein CcmF

NC_017538
(Oligotropha carboxidovorans OM4)

3e-93

504) ccmF
( YP_004632445.1 )

cytochrome c-type biogenesis protein CcmF

NC_015684
(Oligotropha carboxidovorans OM5)

3e-93

505) ccmF
( YP_002289551.1 )

cytochrome c-type biogenesis protein CcmF

NC_011386
(Oligotropha carboxidovorans OM5; ATCC 49405)

3e-93

506) nrfE
( YP_001053749.1 )

cytochrome c-type biogenesis protein NrfE

NC_009053
(Actinobacillus pleuropneumoniae L20)

3e-93

507) Shal_0550
( YP_001672784.1 )

cytochrome c-type biogenesis protein CcmF

NC_010334
(Shewanella halifaxensis HAW-EB4)

4e-93

508) HYPDE_32003
( YP_007914574.1 )

cytochrome c-type biogenesis protein CcmF

NC_021172
(Hyphomicrobium denitrificans 1NES1)

1e-92

509) UMN179_01704
( YP_004420616.1 )

heme lyase subunit NrfE

NC_015460
(Gallibacterium anatis UMN179)

5e-92

510) ccmF
( YP_167117.1 )

cytochrome c-type biogenesis protein CcmF

NC_003911
(Ruegeria pomeroyi DSS-3)

6e-92

511) Nham_1439
( YP_576721.1 )

cytochrome c-type biogenesis protein CcmF

NC_007964
(Nitrobacter hamburgensis X14)

1e-91

512) cycK
( YP_005040435.1 )

Cytochrome c-type biogenesis protein cycK

NC_016622
(Azospirillum lipoferum 4B)

2e-91

513) GOX1650
( YP_192047.1 )

cytochrome c-type biogenesis protein CysK

NC_006677
(Gluconobacter oxydans 621H)

5e-91

514) ccmF
( YP_007698836.1 )

cytochrome c-type biogenesis protein CcmF

NC_020908
(Octadecabacter arcticus 238)

6e-91

515) Caul_3891
( YP_001685514.1 )

cytochrome c-type biogenesis protein CcmF

NC_010338
(Caulobacter sp. K31)

9e-91

516) cycK
( YP_007514450.1 )

cytochrome c-type biogenesis protein CycK

NC_020453
(Bradyrhizobium oligotrophicum S58)

2e-90

517) WQG_17610
( YP_007548829.1 )

NrfE

NC_020515
(Bibersteinia trehalosi USDA-ARS-USMARC-192)

2e-90

518) GbCGDNIH1_0269
( YP_744090.1 )

heme chaperone--apocytochrome heme-lyase

NC_008343
(Granulibacter bethesdensis CGDNIH1)

3e-90

519) LHK_02091
( YP_002796084.1 )

Cytochrome c-type biogenesis protein CcmF precursor

NC_012559
(Laribacter hongkongensis HLHK9)

6e-90

520) EIO_2101
( YP_003964505.1 )

cytochrome C biogenesis protein CcmF

NC_014625
(Ketogulonicigenium vulgare Y25)

9e-90

521) ccmF
( YP_003450051.1 )

cytochrome C-type biogenesis protein

NC_013854
(Azospirillum sp. B510)

7e-89

522) Psesu_1267
( YP_004146346.1 )

cytochrome C biogenesis protein CcmF

NC_014924
(Pseudoxanthomonas suwonensis 11-1)

1e-88

523) Sbal195_4003
( YP_001556423.1 )

cytochrome c nitrate reductase biogenesis protein NrfE

NC_009997
(Shewanella baltica OS195)

8e-89

524) Sbal678_4034
( YP_005275216.1 )

cytochrome c nitrate reductase biogenesis protein NrfE

NC_016901
(Shewanella baltica OS678)

8e-89

525) cycK
( YP_001204784.1 )

cytochrome c-type biogenesis protein cycK

NC_009445
(Bradyrhizobium sp. ORS278)

1e-88

526) Swoo_4478
( YP_001762824.1 )

cytochrome c-type biogenesis protein CcmF

NC_010506
(Shewanella woodyi ATCC 51908)

1e-88

527) Nwi_1193
( YP_317807.1 )

cytochrome c-type biogenesis protein CcmF

NC_007406
(Nitrobacter winogradskyi Nb-255)

4e-88

528) ccmF
( YP_089006.1 )

CcmF protein

NC_006300
(Mannheimia succiniciproducens MBEL55E)

2e-87

529) sirE
( NP_716114.2 )

cytochrome c maturation system haem lyase subunit SirE

NC_004347
(Shewanella oneidensis MR-1)

2e-87

530) Dshi_3775
( YP_001541986.1 )

cytochrome c-type biogenesis protein CcmF

NC_009955
(Dinoroseobacter shibae DFL 12)

3e-87

531) Dshi_4051
( YP_001542259.1 )

cytochrome c-type biogenesis protein CcmF

NC_009957
(Dinoroseobacter shibae DFL 12)

3e-87

532) RPB_3448
( YP_487055.1 )

cytochrome c-type biogenesis protein CcmF

NC_007778
(Rhodopseudomonas palustris HaA2)

4e-87

533) Rvan_3218
( YP_004013512.1 )

cytochrome C biogenesis protein CcmF

NC_014664
(Rhodomicrobium vannielii ATCC 17100)

4e-87

534) Bind_2232
( YP_001833339.1 )

cytochrome c-type biogenesis protein CcmF

NC_010581
(Beijerinckia indica ATCC 9039)

5e-87

535) PP1Y_AT14253
( YP_004534144.1 )

cytochrome c assembly protein

NC_015580
(Novosphingobium sp. PP1Y)

3e-86

536) cycK
( YP_988750.1 )

cytochrome c-type biogenesis protein CycK

NC_008783
(Bartonella bacilliformis KC583)

5e-86

537) Cseg_1010
( YP_003592133.1 )

cytochrome C-type biogenesis protein CcmF

NC_014100
(Caulobacter segnis ATCC 21756)

8e-86

538) ccmF
( YP_004866127.1 )

cytochrome c-type biogenesis protein CcmF

NC_016026
(Micavibrio aeruginosavorus ARL-13)

8e-86

539) Marme_3200
( YP_004314253.1 )

cytochrome C biogenesis protein CcmF

NC_015276
(Marinomonas mediterranea MMB-1)

2e-85

540) cycK
( YP_001239098.1 )

cytochrome C-type biogenesis protein cycK

NC_009485
(Bradyrhizobium sp. BTAi1)

3e-85

541) CC_2760
( NP_421556.1 )

cytochrome C-type biogenesis protein CycK

NC_002696
(Caulobacter crescentus CB15)

3e-85

542) CCNA_02848
( YP_002518221.1 )

heme chaperone-apocytochrome heme-lyase

NC_011916
(Caulobacter crescentus NA1000)

3e-85

543) Ssed_0481
( YP_001472222.1 )

cytochrome c-type biogenesis protein CcmF

NC_009831
(Shewanella sediminis HAW-EB3)

3e-85

544) nrfE
( YP_001142122.1 )

cytochrome c-type biogenesis protein NrfE

NC_009348
(Aeromonas salmonicida A449)

5e-85

545) RPD_2003
( YP_569139.1 )

cytochrome c-type biogenesis protein CcmF

NC_007958
(Rhodopseudomonas palustris BisB5)

8e-85

546) GLX_11000
( YP_004867882.1 )

cytochrome c-type biogenesis protein

NC_016027
(Gluconacetobacter xylinus NBRC 3288)

8e-85

547) Mesop_5375
( YP_004613885.1 )

cytochrome c-type biogenesis protein CcmF

NC_015675
(Mesorhizobium opportunistum WSM2075)

9e-85

548) CGSHiGG_08245
( YP_001292866.1 )

hypothetical protein

NC_009567
(Haemophilus influenzae PittGG)

3e-84

549) Hden_1131
( YP_003755266.1 )

cytochrome C biogenesis protein CcmF

NC_014313
(Hyphomicrobium denitrificans ATCC 51888)

4e-84

550) nrfE
( YP_005177151.1 )

cytochrome c-type biogenesis protein NrfE

NC_016808
(Pasteurella multocida 36950)

5e-84

551) nfrE
( YP_002475684.1 )

cytochrome c-type biogenesis protein

NC_011852
(Haemophilus parasuis SH0165)

6e-84

552) ccmF
( YP_001524050.1 )

cytochrome c-type biogenesis protein

NC_009937
(Azorhizobium caulinodans ORS 571)

1e-83

553) nrfE
( NP_244964.1 )

protein NrfE

NC_002663
(Pasteurella multocida Pm70)

1e-83

554) cycK
( NP_947266.1 )

cytochrome c-type biogenesis protein CcmF

NC_005296
(Rhodopseudomonas palustris CGA009)

2e-83

555) M446_4431
( YP_001771207.1 )

cytochrome c-type biogenesis protein CcmF

NC_010511
(Methylobacterium sp. 4-46)

2e-83

556) NT08PM_1366
( YP_006240243.1 )

cytochrome c-type biogenesis protein CcmF

NC_017764
(Pasteurella multocida 3480)

2e-83

557) nrfE
( YP_005363690.1 )

cytochrome c-type biogenesis protein

NC_017027
(Pasteurella multocida HN06)

2e-83

558) Rpal_2132
( YP_001991129.1 )

cytochrome C-type biogenesis protein CcmF

NC_011004
(Rhodopseudomonas palustris TIE-1)

2e-83

559) F382_10695
( YP_008234944.1 )

heme lyase subunit CcmF

NC_021743
(Mannheimia haemolytica D153)

5e-83

560) J450_09615
( YP_008220910.1 )

heme lyase subunit CcmF

NC_021738
(Mannheimia haemolytica D171)

5e-83

561) J451_10925
( YP_008223505.1 )

heme lyase subunit CcmF

NC_021739
(Mannheimia haemolytica D174)

5e-83

562) nrfE
( YP_007882924.1 )

cytochrome c-type biogenesis protein NrfE

NC_021082
(Mannheimia haemolytica M42548)

5e-83

563) D650_22470
( YP_007667024.1 )

NrfE

NC_020833
(Mannheimia haemolytica USDA-ARS-USMARC-183)

5e-83

564) D648_5650
( YP_007668077.1 )

NrfE

NC_020834
(Mannheimia haemolytica USDA-ARS-USMARC-185)

5e-83

565) N220_02805
( YP_008338021.1 )

heme lyase subunit CcmF

NC_021883
(Mannheimia haemolytica USMARC_2286)

5e-83

566) Shew_0347
( YP_001092478.1 )

cytochrome c assembly protein

NC_009092
(Shewanella loihica PV-4)

5e-83

567) ELI_03870
( YP_457663.1 )

cytochrome c biogenesis factor

NC_007722
(Erythrobacter litoralis HTCC2594)

7e-83

568) RPC_1836
( YP_531714.1 )

cytochrome c-type biogenesis protein CcmF

NC_007925
(Rhodopseudomonas palustris BisB18)

7e-83

569) R2866_1446
( YP_005828112.1 )

Putative cytochrome C-type biogenesis protein

NC_017451
(Haemophilus influenzae R2866)

7e-83

570) Plav_0941
( YP_001412221.1 )

cytochrome c-type biogenesis protein CcmF

NC_009719
(Parvibaculum lavamentivorans DS-1)

1e-82

571) YE105_C2525
( YP_004298724.1 )

cytochrome c bioproteinsis factor

NC_015224
(Yersinia enterocolitica 105.5R(r))

7e-83

572) HI0936
( NP_439096.1 )

cytochrome C-type biogenesis

NC_000907
(Haemophilus influenzae Rd KW20)

1e-82

573) Rpdx1_3581
( YP_004109883.1 )

cytochrome c-type biogenesis protein CcmF

NC_014834
(Rhodopseudomonas palustris DX-1)

2e-82

574) HIBPF13700
( YP_004135770.1 )

cytochrome c-type biogenesis protein nrfe

NC_014920
(Haemophilus influenzae F3031)

2e-82

575) CGSHiEE_07285
( YP_001291167.1 )

cytochrome c-type biogenesis protein NrfE

NC_009566
(Haemophilus influenzae PittEE)

2e-82

576) Hbal_1274
( YP_003059663.1 )

cytochrome C assembly protein

NC_012982
(Hirschia baltica ATCC 59814)

3e-82

577) Msil_0438
( YP_002360774.1 )

cytochrome c assembly protein

NC_011666
(Methylocella silvestris BL2)

4e-82

578) HICON_04640
( YP_004137617.1 )

cytochrome C biogenesis protein NrfE

NC_014922
(Haemophilus influenzae F3047)

5e-82

579) Y11_04841
( YP_006003983.1 )

cytochrome c-type heme lyase subunit nrfE,nitrite reductase complex assembly

NC_017564
(Yersinia enterocolitica Y11)

5e-82

580) nrfE
( YP_248635.1 )

cytochrome c-type biogenesis protein NrfE

NC_007146
(Haemophilus influenzae 86-028NP)

1e-81

581) B565_1692
( YP_004392344.1 )

cytochrome c-type biogenesis protein CcmF

NC_015424
(Aeromonas veronii B565)

2e-81

582) Snov_0730
( YP_003692680.1 )

cytochrome C biogenesis protein CcmF

NC_014217
(Starkeya novella DSM 506)

3e-81

583) K756_00895
( YP_008123011.1 )

cytochrome c-type biogenesis protein

NC_021521
(Haemophilus parasuis ZJ0906)

4e-81

584) Mar181_0843
( YP_004480816.1 )

cytochrome c-type biogenesis protein CcmF

NC_015559
(Marinomonas posidonica IVIA-Po-181)

2e-80

585) nrfE
( YP_008543697.1 )

cytochrome c-type biogenesis protein NrfE

NC_022356
(Haemophilus influenzae KR494)

6e-80

586) HIB_10740
( YP_005179100.1 )

cytochrome c-type biogenesis protein NrfE

NC_016809
(Haemophilus influenzae 10810)

1e-79

587) cycK
( YP_468823.1 )

cytochrome-c-type synthesis protein

NC_007761
(Rhizobium etli CFN 42)

2e-79

588) XF2460
( NP_299739.1 )

c-type cytochrome biogenesis membrane protein

NC_002488
(Xylella fastidiosa 9a5c)

4e-79

589) cycK
( YP_001603672.1 )

cytochrome c-type biogenesis protein cycK

NC_010125
(Gluconacetobacter diazotrophicus PAl 5)

6e-79

590) Gdia_2932
( YP_002277278.1 )

cytochrome c-type biogenesis protein CcmF

NC_011365
(Gluconacetobacter diazotrophicus PAl 5)

6e-79

591) R2846_1374
( YP_005829818.1 )

Putative cytochrome C-type biogenesis protein

NC_017452
(Haemophilus influenzae R2846)

7e-79

592) ccmF-1
( YP_008364058.1 )

cytochrome-c-type biogenesis protein CcmF 1

NC_021905
(Rhizobium etli Mim1)

1e-78

593) PB2503_05237
( YP_003854264.1 )

Cytochrome c-type biogenesis protein CcmF

NC_014414
(Parvularcula bermudensis HTCC2503)

2e-78

594) RPE_1934
( YP_780858.1 )

cytochrome c-type biogenesis protein CcmF

NC_008435
(Rhodopseudomonas palustris BisA53)

3e-78

595) ccmF-2
( YP_856982.1 )

cytochrome c-type biogenesis protein CcmF

NC_008570
(Aeromonas hydrophila ATCC 7966)

5e-78

596) ccmF
( YP_760028.1 )

cytochrome c-type biogenesis protein CcmF

NC_008358
(Hyphomonas neptunium ATCC 15444)

7e-77

597) cycK
( YP_004158656.1 )

cytochrome C-type biogenesis protein

NC_014932
(Bartonella clarridgeiae 73)

1e-76

598) nfrE
( NP_873156.1 )

cytochrome c-type biogenesis protein

NC_002940
(Haemophilus ducreyi 35000HP)

1e-76

599) XFLM_01600
( YP_005999689.1 )

c-type cytochrome biogenesis membrane protein

NC_017562
(Xylella fastidiosa GB514)

2e-76

600) Xfasm12_1622
( YP_001776161.1 )

c-type cytochrome biogenesis membrane protein

NC_010513
(Xylella fastidiosa M12)

2e-76

601) XfasM23_1565
( YP_001830247.1 )

cytochrome c-type biogenesis protein CcmF

NC_010577
(Xylella fastidiosa M23)

2e-76

602) ccmF
( NP_779674.1 )

c-type cytochrome biogenesis membrane protein

NC_004556
(Xylella fastidiosa Temecula1)

2e-76

603) swp_4658
( YP_002313881.1 )

Cytochrome c-type biogenesis protein CcmF

NC_011566
(Shewanella piezotolerans WP3)

3e-76

604) BJ6T_66410
( YP_005611478.1 )

cytochrome C-type biogenesis protein

NC_017249
(Bradyrhizobium japonicum USDA 6)

1e-75

605) AHML_10625
( YP_008043254.1 )

cytochrome c-type biogenesis protein CcmF

NC_021290
(Aeromonas hydrophila ML09-119)

6e-76

606) cycK
( YP_005452181.1 )

cytochrome c-type biogenesis protein CycK

NC_017082
(Bradyrhizobium sp. S23321)

4e-75

607) Acry_2854
( YP_001235963.1 )

cytochrome c assembly protein

NC_009484
(Acidiphilium cryptum JF-5)

9e-75

608) ccmF
( YP_004285423.1 )

cytochrome c-type biogenesis protein CcmF

NC_015186
(Acidiphilium multivorum AIU301)

9e-75

609) cycK
( YP_165027.1 )

cytochrome c-type biogenesis protein CycK

NC_006569
(Ruegeria pomeroyi DSS-3)

3e-74

610) Sala_1516
( YP_616562.1 )

cytochrome c assembly protein

NC_008048
(Sphingopyxis alaskensis RB2256)

4e-74

611) Bresu_0881
( YP_003817818.1 )

cytochrome C assembly protein

NC_014375
(Brevundimonas subvibrioides ATCC 15264)

2e-73

612) Zmob_0087
( YP_005620391.1 )

cytochrome c assembly protein

NC_017262
(Zymomonas mobilis ATCC 10988)

5e-73

613) ZMO1255
( YP_162990.1 )

cytochrome c assembly protein

NC_006526
(Zymomonas mobilis ZM4)

5e-73

614) Za10_0083
( YP_003225221.1 )

cytochrome C assembly protein

NC_013355
(Zymomonas mobilis NCIMB 11163)

6e-73

615) Mesau_04933
( YP_007306624.1 )

c-type cytochrome biogenesis protein CcmF

NC_019973
(Mesorhizobium australicum WSM2073)

3e-72

616) ZZ6_0082
( YP_006517509.1 )

cytochrome c assembly protein

NC_018145
(Zymomonas mobilis ATCC 29191)

4e-72

617) BN69_0808
( YP_006590910.1 )

cytochrome c-type biogenesis protein CcmF

NC_018485
(Methylocystis sp. SC2)

9e-72

618) Meso_0899
( YP_673461.1 )

cytochrome c-type biogenesis protein CcmF

NC_008254
(Chelativorans sp. BNC1)

3e-71

619) cycK
( YP_002131529.1 )

cytochrome c-type biogenesis protein CycK

NC_011144
(Phenylobacterium zucineum HLK1)

1e-69

620) Zymop_0062
( YP_004661256.1 )

cytochrome c assembly protein

NC_015709
(Zymomonas mobilis ATCC 29192)

5e-67

621) RM11_0379
( YP_006664832.1 )

cytochrome c-type biogenesis protein cycK

NC_018533
(Bartonella quintana RM-11)

7e-66

622) Mesci_4875
( YP_004144031.1 )

cytochrome C-type biogenesis protein CcmF

NC_014923
(Mesorhizobium ciceri WSM1271)

3e-64

623) cycK
( YP_002971518.1 )

cytochrome c-type biogenesis protein CycK

NC_012846
(Bartonella grahamii as4aup)

6e-64

624) cycK
( YP_033311.1 )

cytochrome c-type biogenesis protein cyck

NC_005956
(Bartonella henselae Houston-1)

2e-63

625) cycK
( YP_001609123.1 )

cytochrome C-type biogenesis protein

NC_010161
(Bartonella tribocorum CIP 105476)

5e-62

626) PC1_2428
( YP_003017995.1 )

cytochrome c-type biogenesis protein CcmF

NC_012917
(Pectobacterium carotovorum PC1)

6e-62

• Sequence Alignments

1) SSPA0578 in NC_011147


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  871 bits (3298),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 634/643 (99%), Positives = 640/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllPVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLL+VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRRVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR+VPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVLFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMV FALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRallltalvstlvlsvllPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

2) ccmF2 in NC_011147


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  871 bits (3298),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 634/643 (99%), Positives = 640/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllPVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLL+VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRRVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR+VPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVLFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMV FALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRallltalvstlvlsvllPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

3) ccmF in NC_006511


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  871 bits (3298),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 634/643 (99%), Positives = 640/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllPVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLL+VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRRVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR+VPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVLFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMV FALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRallltalvstlvlsvllPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

4) ccmF in NC_006511


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  871 bits (3298),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 634/643 (99%), Positives = 640/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllPVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLL+VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRRVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR+VPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVLFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMV FALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRallltalvstlvlsvllPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

5) ccmF in NC_006905


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  869 bits (3292),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 643/643 (100%), Positives = 643/643 (100%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllwaavvttlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

6) ccmF in NC_006905


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  869 bits (3292),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 643/643 (100%), Positives = 643/643 (100%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllwaavvttlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

7) ccmF in NC_012125


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  869 bits (3292),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 643/643 (100%), Positives = 643/643 (100%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllwaavvttlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

8) ccmF in NC_012125


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  869 bits (3292),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 643/643 (100%), Positives = 643/643 (100%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllwaavvttlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

9) ccmF in NC_011205


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  868 bits (3288),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 636/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRRVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR+VPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWAggllmalggllclVDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCL DPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

10) ccmF in NC_011205


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  868 bits (3288),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 636/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRRVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR+VPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWAggllmalggllclVDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCL DPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

11) SEN2232 in NC_011294


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  868 bits (3287),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 640/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRPVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR VPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllwaavvttlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWAggllmalggllclVDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCL DPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

12) ccmF in NC_011294


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  868 bits (3287),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 640/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRPVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR VPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllwaavvttlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWAggllmalggllclVDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCL DPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

13) SEEB0189_00790 in NC_021844


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  867 bits (3283),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 638/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

14) SEEB0189_08320 in NC_021844


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  867 bits (3283),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 638/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

15) SPUCDC_0642 in NC_022221


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  867 bits (3284),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 639/643 (99%), Positives = 640/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRPVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR VPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFVRTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPF RTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllwaavvttlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWAggllmalggllclVDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCL DPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

16) SPUCDC_3738 in NC_022221


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  867 bits (3284),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 639/643 (99%), Positives = 640/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRPVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR VPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFVRTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPF RTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllwaavvttlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWAggllmalggllclVDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCL DPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

17) SPUL_0642 in NC_016831


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  867 bits (3284),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 639/643 (99%), Positives = 640/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRPVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR VPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFVRTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPF RTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllwaavvttlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWAggllmalggllclVDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCL DPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

18) SPUL_3752 in NC_016831


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  867 bits (3284),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 639/643 (99%), Positives = 640/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRPVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR VPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFVRTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPF RTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllwaavvttlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWAggllmalggllclVDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCL DPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

19) I137_02940 in NC_021984


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  867 bits (3284),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 639/643 (99%), Positives = 640/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRPVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR VPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFVRTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPF RTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllwaavvttlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWAggllmalggllclVDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCL DPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

20) I137_18020 in NC_021984


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  867 bits (3284),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 639/643 (99%), Positives = 640/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRPVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR VPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFVRTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPF RTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllwaavvttlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWAggllmalggllclVDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCL DPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

21) ccmF1 in NC_003198


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  867 bits (3285),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 642/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllltalvstlvlsvllpwllEDRIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLL +A+V+TLVLSVLLPWLLED+IIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

22) ccmF2 in NC_003198


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  867 bits (3285),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 642/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllltalvstlvlsvllpwllEDRIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLL +A+V+TLVLSVLLPWLLED+IIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

23) STBHUCCB_6570 in NC_016832


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  867 bits (3285),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 642/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllltalvstlvlsvllpwllEDRIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLL +A+V+TLVLSVLLPWLLED+IIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

24) STBHUCCB_39000 in NC_016832


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  867 bits (3285),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 642/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllltalvstlvlsvllpwllEDRIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLL +A+V+TLVLSVLLPWLLED+IIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

25) TY21A_03130 in NC_021176


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  867 bits (3285),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 642/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllltalvstlvlsvllpwllEDRIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLL +A+V+TLVLSVLLPWLLED+IIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

26) TY21A_18755 in NC_021176


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  867 bits (3285),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 642/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllltalvstlvlsvllpwllEDRIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLL +A+V+TLVLSVLLPWLLED+IIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

27) ccmF in NC_004631


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  867 bits (3285),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 642/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllltalvstlvlsvllpwllEDRIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLL +A+V+TLVLSVLLPWLLED+IIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

28) ccmF in NC_004631


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  867 bits (3285),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 642/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllltalvstlvlsvllpwllEDRIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLL +A+V+TLVLSVLLPWLLED+IIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

29) SE451236_01825 in NC_021820


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

30) SE451236_17445 in NC_021820


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

31) ccmF in NC_011149


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3281),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 635/643 (99%), Positives = 640/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLVFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFL FILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNTLWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNN+LWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllltalvstlvlsvllpwllEDKIIAMTVVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLL +A+V+TLVLSVLLPWLLEDKIIAMT VGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

32) ccmF in NC_011149


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3281),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 635/643 (99%), Positives = 640/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLVFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFL FILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNTLWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNN+LWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllltalvstlvlsvllpwllEDKIIAMTVVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLL +A+V+TLVLSVLLPWLLEDKIIAMT VGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

33) SBOV39081 in NC_022241


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

34) ccmF in NC_011080


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

35) ccmF in NC_011080


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

36) SN31241_610 in NC_021902


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

37) SN31241_33530 in NC_021902


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

38) ccmF_1 in NC_016856


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

39) ccmF_2 in NC_016856


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

40) ccmF1 in NC_017046


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

41) ccmF1 in NC_017046


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

42) STMMW_22783 in NC_016854


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

43) ccmF in NC_003197


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

44) ccmF in NC_003197


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

45) ccmF2 in NC_016810


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

46) ccmF1 in NC_016810


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

47) ccmF in NC_016857


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

48) ccmF in NC_016857


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

49) STMDT12_C22710 in NC_016860


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

50) STMDT12_C39740 in NC_016860


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

51) STU288_07620 in NC_021151


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

52) STU288_19280 in NC_021151


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

53) ccmE in NC_016863


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

54) ccmF in NC_016863


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

55) CFSAN001921_05545 in NC_021814


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

56) CFSAN001921_21355 in NC_021814


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

57) CFSAN002050_01960 in NC_021818


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  865 bits (3274),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 635/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNTLWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNN+LWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGALVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVG+LVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

58) CFSAN002050_18175 in NC_021818


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  865 bits (3274),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 635/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNTLWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNN+LWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGALVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVG+LVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

59) SPAB_00743 in NC_010102


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  865 bits (3275),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 636/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRRVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR+VPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

60) SPAB_04750 in NC_010102


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  865 bits (3275),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 636/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRRVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR+VPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

61) ccmF in NC_011094


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  865 bits (3276),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 634/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRPVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR VPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSSPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTS+PFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFRAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGF+AWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNTLWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNN+LWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

62) ccmF in NC_011094


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  865 bits (3276),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 634/643 (99%), Positives = 641/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRPVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR VPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSSPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTS+PFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFRAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGF+AWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNTLWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNN+LWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

63) SG2277 in NC_011274


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  864 bits (3272),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 639/643 (99%), Positives = 640/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVLYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRPVPAD  120
            FVVNDFTVAYVAGNSNTQLPV YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR VPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllwaavvttlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWAggllmalggllclVDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCL DPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

64) ccmF in NC_011274


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  864 bits (3272),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 639/643 (99%), Positives = 640/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVLYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRPVPAD  120
            FVVNDFTVAYVAGNSNTQLPV YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR VPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllwaavvttlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWAggllmalggllclVDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCL DPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

65) SEEH1578_05235 in NC_021810


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  864 bits (3272),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 636/643 (99%), Positives = 640/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFPEVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTF EVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

66) SEEH1578_20520 in NC_021810


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  864 bits (3272),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 636/643 (99%), Positives = 640/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFPEVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTF EVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

67) SU5_04291 in NC_017623


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  864 bits (3272),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 636/643 (99%), Positives = 640/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFPEVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTF EVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

68) CFSAN002069_12940 in NC_021812


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  864 bits (3272),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 636/643 (99%), Positives = 640/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFPEVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTF EVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

69) CFSAN002069_20595 in NC_021812


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  864 bits (3272),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 636/643 (99%), Positives = 640/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFPEVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTF EVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

70) ccmF in NC_011083


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  864 bits (3272),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 636/643 (99%), Positives = 640/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFPEVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTF EVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

71) ccmF in NC_011083


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  864 bits (3272),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 636/643 (99%), Positives = 640/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGHallclalgvalllSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRtllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480
            NIR LL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFPEVRDITGPN  540
            SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTF EVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

72) CFSAN001992_00195 in NC_020307


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  854 bits (3234),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 629/643 (98%), Positives = 639/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGTallclalgvslllsvYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYG ALLCLALGV+LLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRRVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR+VPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFRAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGF+AWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNTLWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNN+LWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGARI  480
            NIRKLL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG++ 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYLGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSY GMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

73) CFSAN001992_14555 in NC_020307


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  854 bits (3234),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 629/643 (98%), Positives = 639/643 (99%), Gaps = 0/643 (0%)

Query  1    MMPEYGTallclalgvslllsvYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60
            MMPEYG ALLCLALGV+LLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRRVPAD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR+VPAD
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRAGFRAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRAGF+AWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNTLWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNN+LWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NIRKllltalvstlvlsvllpwllEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGARI  480
            NIRKLL +A+V+TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG++ 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SLSYLGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            SLSY GMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

74) SARI_03830 in NC_010067


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  837 bits (3168),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 607/643 (95%), Positives = 625/643 (98%), Gaps = 0/643 (0%)

Query  1    MMPEIGNallclalgvalllSVYPLWGAARGDARMMASSGVFAWLLFLCVAGAFFVLAHA  60
            MMPE G+ALLCLALGVALLLSVYPLWG ARGDARMMAS+GVFAWLLF+CVAGAFFVL HA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRPVPVD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR VP D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVSAGFLVFILFTSNPFARTLPDFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMV AGFL FILFTS PFARTLP FPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLCGRLDSAFARFSRPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALL GRLDSAF+RF+RPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRASFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRA+FKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMAPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLM PFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNlllvafittlllsvllpwllQDRIAAMTVAGMAMACWIGVLAVAEAVQRASRSTRT  480
            +IR+LL  A +TTL+LSVLLPWLL+D+I AMT  GMAMACWI+VLAVAEAVQR SR+T+T
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SFSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            S+SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

75) SARI_00641 in NC_010067


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  835 bits (3162),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 606/643 (95%), Positives = 625/643 (98%), Gaps = 0/643 (0%)

Query  1    MMPEIGNallclalgvalllSVYPLWGAARGDARMMASSGVFAWLLFLCVAGAFFVLAHA  60
            MMPE G+ALLCLALGVALLLSVYPLWG ARGDARMMAS+GVFAWLLF+CVAGAFFVL HA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRPVPVD  120
            FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR VP D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVSAGFLVFILFTSNPFARTLPDFPVEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMV AGFL FILFTS PFARTLP FPVEGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALLCGRLDSAFARFSRPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAALL GRLDSAF+RF+RPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVTEQRASFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AVTEQRA+FKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNvllm  360
            SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMAPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLM PFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNlllvafittlllsvllpwllQDRIAAMTVAGMAMACWIAVLAVAEAVQRVSRGTRT  480
            +IR+LL  A +TTL+LSVLLPWLL+D+I AMT  GMAMACWIAVLAVAEAVQRVSRGT+T
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  SFSYWGMVAAHLGLAVTITGIAFSQNYSIERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540
            S+SYWGMVAAHLGLAVTITGIAFSQNYS+ERDVRMRAGDSVTIHDYRFTFREVRDITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVAIIGVTRDGAPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600
            YRGGVA+IGVTR+G PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWaggllmalggllclaDPRYRRRKPLPEAG  643
            AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

76) ccmF2 in NC_015761


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  816 bits (3088),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 575/622 (93%), Positives = 607/622 (98%), Gaps = 0/622 (0%)

Query  21   SVYPLWGVARGDARMMASARLFSWLLFLCVAGAFAVLVHAFVVNDFTVLYVASNSNTQLP  80
            SVYPLWGVARGDARMMASA +F+WLLF+CVAGAF VLVHAFVVNDFTV YVA+NSNTQLP
Sbjct  21   SVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLP  80

Query  81   VWYRVAATWGAHEGSLLLWVLLMSGWTFAVALFSKSMPPDIVARVLAVMGMVSAGFLLFI  140
            VWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+ +P+DIVARVLAVMGMV AGFL FI
Sbjct  81   VWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFI  140

Query  141  LFTSSPFARTLPDFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRL  200
            LFTS+PFARTLP FPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRL
Sbjct  141  LFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRL  200

Query  201  DSTFARFSRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALI  260
            DS+F+RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+
Sbjct  201  DSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALL  260

Query  261  HSLAVTEQRASFKAWTLLLAICAFSLCLLGTFLVRSGVLVSVHAFASDPSRGMFILAFMV  320
            HS+AVTEQRA+FKAWTLLL+ICAFSLCLLGTFLVRSGVLVSVHAFASDP+RGMFILAFMV
Sbjct  261  HSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMV  320

Query  321  LVTGGSLLLFAARGHKVRSRVNNALWSRESlllannvllmaamlvvllgtllplvHKQLG  380
            LVTGGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLLMAAMLVVLLGTLLPLVHKQLG
Sbjct  321  LVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLG  380

Query  381  LGSISIGEPFFNTMFTWLMAPFALLLGIGPLVRWGRDRPRKIRtlllaavvttlalsvll  440
            LGSIS+GEPFFNTMFTWLM PFALLLG+GPLVRWGRDRPR+IR LL AAVVTTL LSVLL
Sbjct  381  LGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLL  440

Query  441  PWLLEDNIIAMTAVGMAMACWIVVLAVAEAVQRLSRGTKTPLSYWGMVAAHLGLAVTITG  500
            PWLLED+IIAMTAVGMAMACWI VLAVAEAVQR+SRGTKT+LSYWGMVAAHLGLAVTITG
Sbjct  441  PWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITG  500

Query  501  IAFSQNYSVERDVRMRAGDSVDIHHYRFTFREVRDITGPNYRGGVAIIGVTRDGEPEAVL  560
            IAFSQNYSVERDVRMRAGDSV IH+YRFTFREVRDITGPNYRGGVA+IGVTR+GEPEAVL
Sbjct  501  IAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVL  560

Query  561  HAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFIRWIWaggilm  620
            HAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPF+RWIWAGG+LM
Sbjct  561  HAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLM  620

Query  621  alggllclaDPRYRRRKPSPEA  642
            ALGGLLCLADPRYRRRKP PEA
Sbjct  621  ALGGLLCLADPRYRRRKPLPEA  642

77) ccmF in NC_015761


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  816 bits (3088),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 575/622 (93%), Positives = 607/622 (98%), Gaps = 0/622 (0%)

Query  21   SVYPLWGVARGDARMMASARLFSWLLFLCVAGAFAVLVHAFVVNDFTVLYVASNSNTQLP  80
            SVYPLWGVARGDARMMASA +F+WLLF+CVAGAF VLVHAFVVNDFTV YVA+NSNTQLP
Sbjct  21   SVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLP  80

Query  81   VWYRVAATWGAHEGSLLLWVLLMSGWTFAVALFSKSMPPDIVARVLAVMGMVSAGFLLFI  140
            VWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+ +P+DIVARVLAVMGMV AGFL FI
Sbjct  81   VWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFI  140

Query  141  LFTSSPFARTLPDFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRL  200
            LFTS+PFARTLP FPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRL
Sbjct  141  LFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRL  200

Query  201  DSTFARFSRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALI  260
            DS+F+RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+
Sbjct  201  DSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALL  260

Query  261  HSLAVTEQRASFKAWTLLLAICAFSLCLLGTFLVRSGVLVSVHAFASDPSRGMFILAFMV  320
            HS+AVTEQRA+FKAWTLLL+ICAFSLCLLGTFLVRSGVLVSVHAFASDP+RGMFILAFMV
Sbjct  261  HSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMV  320

Query  321  LVTGGSLLLFAARGHKVRSRVNNALWSRESlllannvllmaamlvvllgtllplvHKQLG  380
            LVTGGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLLMAAMLVVLLGTLLPLVHKQLG
Sbjct  321  LVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLG  380

Query  381  LGSISIGEPFFNTMFTWLMAPFALLLGIGPLVRWGRDRPRKIRtlllaavvttlalsvll  440
            LGSIS+GEPFFNTMFTWLM PFALLLG+GPLVRWGRDRPR+IR LL AAVVTTL LSVLL
Sbjct  381  LGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLL  440

Query  441  PWLLEDNIIAMTAVGMAMACWIVVLAVAEAVQRLSRGTKTPLSYWGMVAAHLGLAVTITG  500
            PWLLED+IIAMTAVGMAMACWI VLAVAEAVQR+SRGTKT+LSYWGMVAAHLGLAVTITG
Sbjct  441  PWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITG  500

Query  501  IAFSQNYSVERDVRMRAGDSVDIHHYRFTFREVRDITGPNYRGGVAIIGVTRDGEPEAVL  560
            IAFSQNYSVERDVRMRAGDSV IH+YRFTFREVRDITGPNYRGGVA+IGVTR+GEPEAVL
Sbjct  501  IAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVL  560

Query  561  HAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFIRWIWaggilm  620
            HAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPF+RWIWAGG+LM
Sbjct  561  HAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLM  620

Query  621  alggllclaDPRYRRRKPSPEA  642
            ALGGLLCLADPRYRRRKP PEA
Sbjct  621  ALGGLLCLADPRYRRRKPLPEA  642

78) A464_2367 in NC_021870


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  816 bits (3088),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 576/622 (93%), Positives = 607/622 (98%), Gaps = 0/622 (0%)

Query  21   SVYPLWGVARGDARMMASARLFSWLLFLCVAGAFAVLVHAFVVNDFTVLYVASNSNTQLP  80
            SVYPLWGVARGDARMMASA +F+WLLF+CVAGAF VLVHAFVVNDFTV YVA+NSNTQLP
Sbjct  21   SVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLP  80

Query  81   VWYRVAATWGAHEGSLLLWVLLMSGWTFAVALFSKSMPPDIVARVLAVMGMVSAGFLLFI  140
            VWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+ +P+DIVARVLAVMGMV AGFL FI
Sbjct  81   VWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFI  140

Query  141  LFTSSPFARTLPDFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRL  200
            LFTS+PFARTLP FPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRL
Sbjct  141  LFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRL  200

Query  201  DSTFARFSRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALI  260
            DS+F+RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+
Sbjct  201  DSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALL  260

Query  261  HSLAVTEQRASFKAWTLLLAICAFSLCLLGTFLVRSGVLVSVHAFASDPSRGMFILAFMV  320
            HS+AVTEQRA+FKAWTLLL+ICAFSLCLLGTFLVRSGVLVSVHAFASDP+RGMFILAFMV
Sbjct  261  HSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMV  320

Query  321  LVTGGSLLLFAARGHKVRSRVNNALWSRESlllannvllmaamlvvllgtllplvHKQLG  380
            LVTGGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLLMAAMLVVLLGTLLPLVHKQLG
Sbjct  321  LVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLG  380

Query  381  LGSISIGEPFFNTMFTWLMAPFALLLGIGPLVRWGRDRPRKIRtlllaavvttlalsvll  440
            LGSIS+GEPFFNTMFTWLM PFALLLG+GPLVRWGRDRPR+IR LL AAVVTTL LSVLL
Sbjct  381  LGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLL  440

Query  441  PWLLEDNIIAMTAVGMAMACWIIVLAVAEAVQRLSRGTKTPLSYWGMVAAHLGLAVTITG  500
            PWLLED+IIAMTAVGMAMACWI VLAVAEAVQR+SRGTKT+LSYWGMVAAHLGLAVTITG
Sbjct  441  PWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITG  500

Query  501  IAFSQNYSVERDVRMRAGDSVDIHHYRFTFREVRDITGPNYRGGVAIIGVTRDGEPEAVL  560
            IAFSQNYSVERDVRMRAGDSV IH+YRFTFREVRDITGPNYRGGVA+IGVTR+GEPEAVL
Sbjct  501  IAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVL  560

Query  561  HAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWaggilm  620
            HAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGG+LM
Sbjct  561  HAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLM  620

Query  621  alggllclaDPRYRRRKPSPEA  642
            ALGGLLCLADPRYRRRKP PEA
Sbjct  621  ALGGLLCLADPRYRRRKPLPEA  642

79) A464_3884 in NC_021870


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  816 bits (3088),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 576/622 (93%), Positives = 607/622 (98%), Gaps = 0/622 (0%)

Query  21   SVYPLWGVARGDARMMASARLFSWLLFLCVAGAFAVLVHAFVVNDFTVLYVASNSNTQLP  80
            SVYPLWGVARGDARMMASA +F+WLLF+CVAGAF VLVHAFVVNDFTV YVA+NSNTQLP
Sbjct  21   SVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLP  80

Query  81   VWYRVAATWGAHEGSLLLWVLLMSGWTFAVALFSKSMPPDIVARVLAVMGMVSAGFLLFI  140
            VWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+ +P+DIVARVLAVMGMV AGFL FI
Sbjct  81   VWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFI  140

Query  141  LFTSSPFARTLPDFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRL  200
            LFTS+PFARTLP FPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRL
Sbjct  141  LFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRL  200

Query  201  DSTFARFSRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALI  260
            DS+F+RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+
Sbjct  201  DSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALL  260

Query  261  HSLAVTEQRASFKAWTLLLAICAFSLCLLGTFLVRSGVLVSVHAFASDPSRGMFILAFMV  320
            HS+AVTEQRA+FKAWTLLL+ICAFSLCLLGTFLVRSGVLVSVHAFASDP+RGMFILAFMV
Sbjct  261  HSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMV  320

Query  321  LVTGGSLLLFAARGHKVRSRVNNALWSRESlllannvllmaamlvvllgtllplvHKQLG  380
            LVTGGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLLMAAMLVVLLGTLLPLVHKQLG
Sbjct  321  LVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLG  380

Query  381  LGSISIGEPFFNTMFTWLMAPFALLLGIGPLVRWGRDRPRKIRtlllaavvttlalsvll  440
            LGSIS+GEPFFNTMFTWLM PFALLLG+GPLVRWGRDRPR+IR LL AAVVTTL LSVLL
Sbjct  381  LGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLL  440

Query  441  PWLLEDNIIAMTAVGMAMACWIIVLAVAEAVQRLSRGTKTPLSYWGMVAAHLGLAVTITG  500
            PWLLED+IIAMTAVGMAMACWI VLAVAEAVQR+SRGTKT+LSYWGMVAAHLGLAVTITG
Sbjct  441  PWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITG  500

Query  501  IAFSQNYSVERDVRMRAGDSVDIHHYRFTFREVRDITGPNYRGGVAIIGVTRDGEPEAVL  560
            IAFSQNYSVERDVRMRAGDSV IH+YRFTFREVRDITGPNYRGGVA+IGVTR+GEPEAVL
Sbjct  501  IAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVL  560

Query  561  HAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWaggilm  620
            HAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGG+LM
Sbjct  561  HAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLM  620

Query  621  alggllclaDPRYRRRKPSPEA  642
            ALGGLLCLADPRYRRRKP PEA
Sbjct  621  ALGGLLCLADPRYRRRKPLPEA  642

80) CKO_00581 in NC_009792


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  796 bits (3012),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 550/637 (87%), Positives = 606/637 (96%), Gaps = 0/637 (0%)

Query  1    MMPEIGNallclalgvalllSVYPLWGVGRGDVRMMASARPFSWLLFILVMGAFLVLINA  60
            MMPE G+ALLCLALGVALLLSVYPLWGV+RGD RMMASA  F+WLLFI V GAF+VL++A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVNYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAVFSQRMPLD  120
            FVVNDFTV YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVAVFS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALMSGRLDSTFARFSRPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAAL+SGRLDS+F+RF+RPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPSRGMFILAFMVLVIGGSLLLFATRGHKVRSRVNNALWSRESlllannvlli  360
            SVHAFASDP+RGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMAPFALLLGIGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLM PFALLLG+GPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLQRLLVIALVSTLVLSMLLPWLFEDKIVAMTVVGLAMACWVFVLAVAEVAQRVSRGTKM  480
            ++++LL  A+V+TLVLS+LLPWL+EDKI+AMT VG+AMACW+ VLAVAE  QRVSRGTK 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TLSYWGMVAGHVGLAVTIVGIAFSQNYSVERDVRMKAGDSVSIHDYQFTFREVKEITGPN  540
            +LSYWGMVA+H+GLAVTI GIAFSQNYSVERDVRM+AGDSV+IHDY+FTFREV++ITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVAIIGVTREGKAEATLHAEKRFYNSTSSMMTEAAIDGGITRDLYAALGEELDNGAW  600
            YRGGVA+IGVTR+G +EA LHAEKR+YN++  +MTEAAIDGG+TRDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFIRWIWaggllmalgglFCLFDPRYRQRS  637
            AVRLYYKPF+RWIWAGGLLMALGGL+CL DPRYR+R 
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

81) ccmF in NC_011740


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  793 bits (3002),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 544/636 (86%), Positives = 607/636 (96%), Gaps = 0/636 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVCVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMVC GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTLVLSLIVPWLFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+++PWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKR  636
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

82) ccmF in NC_017663


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  774 bits (2929),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 546/643 (85%), Positives = 610/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAVLRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEAV R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

83) ccmF in NC_017626


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 546/636 (86%), Positives = 606/636 (96%), Gaps = 0/636 (0%)

Query  1    MMPEIGNgllclalgvalllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALGVALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTREGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKR  636
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

84) ccmF in NC_011751


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 546/636 (86%), Positives = 606/636 (96%), Gaps = 0/636 (0%)

Query  1    MMPEIGNgllclalgvalllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALGVALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKR  636
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

85) ECP_2236 in NC_008253


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2925),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/647 (85%), Positives = 611/647 (95%), Gaps = 4/647 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVNPQKTAPEAA  647
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R    K  PEA+
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR----KPLPEAG  643

86) ccmF in NC_011748


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

87) ccmF in NC_017631


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2925),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/647 (85%), Positives = 611/647 (95%), Gaps = 4/647 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVNPQKTAPEAA  647
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R    K  PEA+
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR----KPLPEAG  643

88) ccmF in NC_008563


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2925),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/647 (85%), Positives = 611/647 (95%), Gaps = 4/647 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVNPQKTAPEAA  647
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R    K  PEA+
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR----KPLPEAG  643

89) APECO78_14810 in NC_020163


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTREGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

90) ccmF in NC_012971


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

91) ccmF in NC_012892


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

92) ECBD_1464 in NC_012947


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

93) ccmF in NC_012967


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

94) ccmF in NC_012759


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

95) ccmF in NC_004431


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2925),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/647 (85%), Positives = 611/647 (95%), Gaps = 4/647 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVNPQKTAPEAA  647
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R    K  PEA+
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR----KPLPEAG  643

96) ccmF in NC_017652


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2925),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/647 (85%), Positives = 611/647 (95%), Gaps = 4/647 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVNPQKTAPEAA  647
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R    K  PEA+
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR----KPLPEAG  643

97) ccmF in NC_017651


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2925),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/647 (85%), Positives = 611/647 (95%), Gaps = 4/647 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVNPQKTAPEAA  647
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R    K  PEA+
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR----KPLPEAG  643

98) EcDH1_1463 in NC_017625


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

99) ccmF in NC_017638


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

100) ccmF in NC_011745


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2925),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/647 (85%), Positives = 611/647 (95%), Gaps = 4/647 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVNPQKTAPEAA  647
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R    K  PEA+
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR----KPLPEAG  643

101) ETEC_2330 in NC_017633


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

102) ccmF in NC_017628


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2925),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/647 (85%), Positives = 611/647 (95%), Gaps = 4/647 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVNPQKTAPEAA  647
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R    K  PEA+
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR----KPLPEAG  643

103) ccmF in NC_010473


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

104) ccmF in NC_020518


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

105) ccmF in NC_000913


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

106) ccmF in NC_007779


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

107) ccmF in NC_017660


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

108) EKO11_1560 in NC_016902


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

109) LY180_11470 in NC_022364


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

110) ccmF in NC_017644


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2925),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/647 (85%), Positives = 611/647 (95%), Gaps = 4/647 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVNPQKTAPEAA  647
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R    K  PEA+
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR----KPLPEAG  643

111) O3M_08420 in NC_018650


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

112) O3O_17165 in NC_018661


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

113) O3K_08470 in NC_018658


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

114) ccmF in NC_011601


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2925),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/647 (85%), Positives = 611/647 (95%), Gaps = 4/647 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVNPQKTAPEAA  647
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R    K  PEA+
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR----KPLPEAG  643

115) ccmF in NC_011353


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTREGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

116) ECs3085 in NC_002695


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTREGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

117) ccmF in NC_013008


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTREGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

118) ccmF in NC_013941


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTREGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

119) ECO55CA74_13535 in NC_017656


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTREGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

120) ccmF_1 in NC_022370


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2925),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/647 (85%), Positives = 611/647 (95%), Gaps = 4/647 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVNPQKTAPEAA  647
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R    K  PEA+
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR----KPLPEAG  643

121) ccmF in NC_011742


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2925),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/647 (85%), Positives = 611/647 (95%), Gaps = 4/647 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVNPQKTAPEAA  647
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R    K  PEA+
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR----KPLPEAG  643

122) ECSE_2464 in NC_011415


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

123) ccmF in NC_010498


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

124) UM146_05825 in NC_017632


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2925),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/647 (85%), Positives = 611/647 (95%), Gaps = 4/647 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVNPQKTAPEAA  647
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R    K  PEA+
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR----KPLPEAG  643

125) ccmF in NC_007946


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2925),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/647 (85%), Positives = 611/647 (95%), Gaps = 4/647 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVNPQKTAPEAA  647
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R    K  PEA+
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR----KPLPEAG  643

126) ccmF in NC_017635


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

127) ccmF in NC_017664


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

128) CDCO157_2848 in NC_017906


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTREGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

129) ccmF in NC_007613


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  773 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTREGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

130) ccmF in NC_011750


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  772 bits (2922),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/636 (86%), Positives = 605/636 (96%), Gaps = 0/636 (0%)

Query  1    MMPEIGNgllclalgvalllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALGVALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIEVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWI VLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKR  636
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

131) ccmF in NC_017646


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  772 bits (2922),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/636 (86%), Positives = 605/636 (96%), Gaps = 0/636 (0%)

Query  1    MMPEIGNgllclalgvalllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALGVALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIEVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWI VLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKR  636
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

132) ccmF in NC_017641


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  772 bits (2923),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDSPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRD PR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAVLRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEAV R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTREGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

133) ccmF in NC_017328


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  772 bits (2921),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 608/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLATAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTREGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

134) ccmF in NC_004741


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  772 bits (2921),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 608/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLATAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTREGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

135) ccmF in NC_004337


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  772 bits (2921),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 608/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLATAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTREGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

136) ccmF in NC_008258


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  772 bits (2921),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/643 (85%), Positives = 608/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLATAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTREGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

137) ccmF in NC_009801


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  771 bits (2917),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 544/643 (85%), Positives = 608/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLCGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LL GRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

138) ccmF in NC_009800


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  771 bits (2919),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 544/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTIFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNT+FTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

139) ccmF in NC_011741


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  771 bits (2917),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 544/643 (85%), Positives = 608/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLCGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LL GRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

140) ccmF in NC_013353


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  771 bits (2917),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 544/643 (85%), Positives = 608/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLCGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LL GRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

141) ccmF in NC_013364


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  771 bits (2917),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 544/643 (85%), Positives = 608/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLCGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LL GRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

142) ccmF in NC_002655


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  771 bits (2916),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 544/643 (85%), Positives = 608/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTREGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPXYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DP YR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

143) ccmF in NC_013361


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  771 bits (2917),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 544/643 (85%), Positives = 608/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLCGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LL GRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

144) ccmF in NC_010658


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  771 bits (2919),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 544/643 (85%), Positives = 609/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDSARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASD+ARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTREGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

145) ccmF in NC_011993


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  770 bits (2914),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 548/647 (85%), Positives = 610/647 (95%), Gaps = 4/647 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISLGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+S GTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVNPQKTAPEAA  647
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R    K  PEA+
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR----KPLPEAG  643

146) NRG857_11145 in NC_017634


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  770 bits (2914),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 548/647 (85%), Positives = 610/647 (95%), Gaps = 4/647 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISLGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+S GTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVNPQKTAPEAA  647
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R    K  PEA+
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR----KPLPEAG  643

147) ccmF in NC_013716


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  770 bits (2914),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 540/643 (84%), Positives = 604/643 (94%), Gaps = 0/643 (0%)

Query  1    MMPEFGNallclalgvavllsvlplWGVGRGDVRMMASARPFAWLLFILVMGAFMVLINA  60
            MMPE+G+ALLCLALGVA+LLSV PLWGV+RGD RMMASA  FAWLLFI V GAF VL++A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVLYVASNSNTELPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVALFSQRMPLD  120
            FVVNDFTV YVA+NSNT+LPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGMVSVGFLLFILFTSNPFARTLPDYPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMGMV  GFL FILFTS PFARTLP +P+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALMSGRLDSTFARFSRPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIAAL+SGRLDS+F+RF+RPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLLSICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPSRGMFILAFMVLVIGGSLLLFATRGHKVRSRVNNALWSRESLLLGNNvlli  360
            SVHAFASDP+RGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLLGNNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMAPFALLLGIGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLM PFALLLG+GPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLRRllmvalvstlalslllPWLFENKIVAMTVVGLAMACWVFVLAIAEVVRRVSLGGKM  480
            ++R+LL  A+V+TL LS+LLPWL+E+KI+AMT VG+AMACW+ VLA+AE V+RVS G K 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TLSYWGMVLGHVGLAVTVVGIAFSQNYSVERDVRMKVGDSVDIHQYRFTFRDVKDITGPN  540
            +LSYWGMV +H+GLAVT+ GIAFSQNYSVERDVRM+ GDSV IH+YRFTFR+V+DITGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRGGVAMIDVTRDGKAEATLHAEKRFYNSTRSMMTEAAIDGGIARDLYAALGEELDNGAW  600
            YRGGVA+I+VTR+G +EA LHAEKR+YN++R +MTEAAIDGG++RDLYAALGEELDNGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFIRWIWaggllmalgglFCLFDPRYRKRARPQNTA  643
            AVRLYYKPF+RWIWAGGLLMALGGL+CL DPRYR+R    +++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

148) ECSF_2077 in NC_013654


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  769 bits (2912),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 547/647 (85%), Positives = 609/647 (95%), Gaps = 4/647 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSRRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLS RLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKI  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTK 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVNPQKTAPEAA  647
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R    K  PEA+
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR----KPLPEAG  643

149) SSON53_13190 in NC_016822


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  769 bits (2912),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 543/643 (85%), Positives = 608/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMIASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARM+AS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASYSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+ SNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTREGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

150) ccmF in NC_007384


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  769 bits (2911),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 542/643 (85%), Positives = 608/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMIASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARM+AS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASYSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+ SNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSIDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDS+ IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTREGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

151) EcolC_1454 in NC_010468


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  768 bits (2907),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 544/643 (85%), Positives = 608/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVARGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVARGDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWTLAAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACSIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMAC IAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFTFRDVKEVTGPN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRFTFR+V+++TGPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

152) ccmF in NC_007606


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  762 bits (2884),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 540/643 (84%), Positives = 605/643 (95%), Gaps = 0/643 (0%)

Query  1    MMPEIGNgllclalgialllSVYPLWGVALGDARMMASSRLFAWLLFMSVAGAFLVLVNA  60
            MMPE G++LLCLALG+ALLLSVYPLWGVA GDARMMAS+ +FAWLLF+ VAGAF+VLV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAIFSQRIPLD  120
            FVVNDFTV+YVA+NSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLA+MGMV  GFL FILFTS PF+RTLP FP+EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLSGRLDSTYARFTRPWTMAAWIFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGRLDS+++RF+RPWT+AAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWTLLLAISAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTEQRA+FKAWTLLL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFMVLVIGGSLLLFAARGHKVRSRVNNALWSRESlllannvllv  360
            SVHAFASDPARGMFILAFMVLV GGSLLLFA RGH+VRSRVNNALWSRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRLR  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR R
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KIRNLLIIAFISTlvlslllpwlFESKVVAMTVLGLAMACWIAVLAIAEAALRISRGTKT  480
            +IR+LL  A ++TLVLS+LLPWL+E K++AMT +G+AMACWIAVLA+AEA  R+SRGTKT
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TFSYWGMVAAHLGLAVTIVGIAFSQNYSVERDVRMKSGDSVDIHEYRFIFRDVKEVTGLN  540
            ++SYWGMVAAHLGLAVTI GIAFSQNYSVERDVRM++GDSV IH+YRF FR+V+++TG N
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WRGGVATIGVTRDGKPETVLYAEKRYYNTAGSMMTEAAIDGGITRDLYAALGEELENGAW  600
             RGGVA IGVTR+G PE+VL AEKR YNT+  +MTEAAIDGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIWagglmmalggllCLFDPRYRKRVSPQKTA  643
            AVRLYYKPFVRWIWAGGL+MALGGLLCL DPRYR+R +   ++
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

153) KOX_00290 in NC_016612


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  740 bits (2798),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 499/614 (82%), Positives = 568/614 (93%), Gaps = 0/614 (0%)

Query  1    MMPEVGNgllclalgvalllSVYPLWGAARGDRRMMASSRVFAVLLFILIMGAFMVLINA  60
            MMPE G++LLCLALGVALLLSVYPLWG ARGD RMMAS+ VFA LLFI + GAF VL++A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FITNDFTLSYVASNANTQLPIRYRVAAAWGAHEGSLLLWVLLMSGWTVAVALRSRRMPLD  120
            F+ NDFT++YVA+N+NTQLP++YRVAA+WGAHEGSLLLWVLLMSGWT+AVA+ SR++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGTISVGFLLFILFTSNPFARTLPEFAIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMG +  GFL FILFTS PFARTLP F++EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVSFALAIAALLSGRLDSTFARFSRPWTLAAWAFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSV+FA+AIAALLSGRLDS+F+RF+RPWTLAAW FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLMPWLAGTALLHSLAVTEQRASFKAWTLLLAICAFSLCLLGTFLVRSGVLV  300
            FWDPVENAS+MPWLAGTALLHS+AVTEQRA+FKAWTLLL+ICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFTSDPARGMFILAFMVLVIGGSLLLFAMRGYKVRSRVNNALWSRESLLLGNNvllm  360
            SVHAF+SDPARGMFILAFMVLV GGSLLLFA+RG +VRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamltvllgtllplVHKQLGLGSISIGAPFFNTMFSWLMAPFALLMGIGPLVRWGRDRPR  420
            AAML VLLGTLLPLVHKQLGLGSIS+G PFFNTMF+WLM PFALL+G+GPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLRRLLVIACastlalslllpwwlGDKIVAMTVVGLAMACWVFVLAGVEIALRVSRGARM  480
            ++R+LL  A  +TL LS+LLPW L DKI+AMT VG+AMACW+ VLA  E   RVSRG++ 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TLSYWGMVAGHLGLAVTLVGIAFSQNYSVERDVRMRVGDSVDVHEYRFSFREVKEAIGPN  540
            +LSYWGMVA+HLGLAVT+ GIAFSQNYSVERDVRMR GDSV +H+YRF+FREV++  GPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRSAVAVIGVMRRGEPQAILNAEKRFYHSSSAMMTEAAVDGGFTRDLYAALGEELGNGAW  600
            YR++VA+IGV R+GEP+A+L+AEKR+Y++S  +MTEAA+DGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIW  614
            AVRLYYKPFVRWIW
Sbjct  601  AVRLYYKPFVRWIW  614

154) A225_4499 in NC_018106


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  739 bits (2797),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 499/614 (82%), Positives = 567/614 (93%), Gaps = 0/614 (0%)

Query  1    MMPEVGNgllclalgvalllSVYPLWGAARGDRRMMASSRVFAVLLFILIMGAFMVLINA  60
            MMPE G++LLCLALGVALLLSVYPLWG ARGD RMMAS+ VFA LLFI + GAF VL++A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FITNDFTLSYVVSNANTQLPVRYRVAAAWGAHEGSLLLWVLLMSGWTVAVALRSRRMPLD  120
            F+ NDFT++YV +N+NTQLPV+YRVAA+WGAHEGSLLLWVLLMSGWT+AVA+ SR++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IVARVLAVMGTISVGFLLFILFTSNPFARTLPEFAIEGRDLNPLLQDPGLIFHPPLLYMG  180
            IVARVLAVMG +  GFL FILFTS PFARTLP F++EGRDLNPLLQDPGLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVSFALAIAALLSGRLDSTFARFSRPWTLAAWAFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSV+FA+AIAALLSGRLDS+F+RF+RPWTLAAW FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLMPWLAGTALLHSLAVTEQRASFKAWTLLLAICAFSLCLLGTFLVRSGVLV  300
            FWDPVENAS+MPWLAGTALLHS+AVTEQRA+FKAWTLLL+ICAFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFTSDPARGMFILAFMVLVIGGSLLLFAMRGYKVRSRVNNALWSRESLLLGNNvllm  360
            SVHAF+SDPARGMFILAFMVLV GGSLLLFA+RG +VRSRVNNALWSRESLLLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamltvllgtllplVHKQLGLGSISIGAPFFNTMFSWLMAPFALLMGIGPLVRWGRDRPR  420
            AAML VLLGTLLPLVHKQLGLGSIS+G PFFNTMF+WLM PFALL+G+GPLVRWGRDRPR
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLRRLLVIACastlalslllpwwlGDKIVAMTVVGLAMACWVFVLAGVEIALRVSRGARM  480
            ++R+LL  A  +TL LS+LLPW L DKI+AMT VG+AMACW+ VLA  E   RVSRG++ 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  TLSYWGMVAGHLGLAVTLVGIAFSQNYSVERDVRMRVGDSVDVHEYRFSFREVKEAIGPN  540
            +LSYWGMVA+HLGLAVT+ GIAFSQNYSVERDVRMR GDSV +H+YRF+FREV++  GPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  YRSAVAVIGVMRRGEPQAILNAEKRFYHSSSAMMTEAAVDGGFTRDLYAALGEELGNGAW  600
            YR++VA+IGV R+GEP+A+L+AEKR+Y++S  +MTEAA+DGG+TRDLYAALGEEL+NGAW
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  601  AVRLYYKPFVRWIW  614
            AVRLYYKPFVRWIW
Sbjct  601  AVRLYYKPFVRWIW  614

155) ccmF1 in NC_017910


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  701 bits (2650),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 471/593 (80%), Positives = 548/593 (93%), Gaps = 0/593 (0%)

Query  22   YPLWGVARGDTRMMSSARLFAWLLLLCMAGAFLILTHAFVINDFTVRYVAGNSSTQLPVW  81
            YPLWGVARGD+RMM+SA +FAWLL++C+AGAF++L HAFV+NDFTV YVAGNS+TQLPVW
Sbjct  23   YPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVW  82

Query  82   YRVAAVWGGHEGSLLLWVLLMSGWTFAVALFSQQLPLVMVARVLAVMGMVCVGFLLFILF  141
            YRVAA WG+HEGSLLLWVLLMSGWT+AVA+FS+Q+P  +VARVLAVMGMVC GFL FILF
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  142  TSNPFARTFPDYPLEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRMDT  201
            TS PFART+P +P+EGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGR+D+
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  202  TFARFARPWTLAAWIFLTLGIVLGSAWAYYELGWGGWWFWDPVENASLMPWLAGTALVHS  261
            +F+RFARPWTLAAW+FLTLGIVLGSAWAYYELGWGGWWFWDPVENAS+MPWLAGTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  262  LAVTGQRGSFKAWSLLLAICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMYILAFMVLV  321
            +AVT QR++FKAW+LLL+ICAFSLCLLGTFLVRSGVLVSVHAFASDPARGM+ILAFMVLV
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  322  IGGSLLLFALRGGRIRSPVSNGLWSRESLLLANNvllmtamlvvllgtllplvHKQLGLG  381
             GGSLLLFA+RG R+RS V+N+LWSRESLLL+NNVLLM+AMLVVLLGTLLPLVHKQLGLG
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  382  SISIGEPFFNTLFTWLMVPFALVLGIGPLVRWGRDRPGKIRREllvalvvtlplalllpw  441
            SIS+GEPFFNT+FTWLMVPFAL+LG+GPLVRWGRDRP +IR+ L  A+V TL L++LLPW
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  442  lFEARIEALTALGLAMAGWVMVLLVADVARRVKAGNRPGARYWGMvaghlglavlvvgia  501
            L+E +I A+TA+G+AMA W+ VL VA+  +RV  G + +  YWGMVA+HLGLAV + GIA
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIA  502

Query  502  FSQNYSIERDVRMAMGDSVTIHRYRFTFRELREVAGPNYRAGIGVIDVTREGRHQATLYA  561
            FSQNYS+ERDVRM  GDSVTIH YRFTFRE+R+++GPNYR+G+++I+VTR+G  +A L A
Sbjct  503  FSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHA  562

Query  562  EKRAYHSTSAVMTEAAIDGGLTRDLYAALGEDLGDGAWAVRLYYKPFVRWIWA  614
            EKR Y+++  VMTEAAIDGGLTRDLYAALGE+L++GAWAVRLYYKPFVRWIWA
Sbjct  563  EKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

156) PC1_2419 in NC_012917


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  654 bits (2472),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 484/650 (75%), Positives = 571/650 (88%), Gaps = 7/650 (1%)

Query  1    MMPEVGNYllclalgvalllSVYPLWGAARQDTRLMALARPLAWALFACILASFLVLVHA  60
            MMPE G+ LLCLALGVALLLSVYPLWG AR D+R+MA A  +AW LF C+ ++F+VLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   LVINDFTVLYVANNSNRALPVWYRVAAAWGAHEGSLLLWVLLMSGWTFAVAIFSRGMSLD  120
            +V+NDFTV YVA NSN  LPVWYRVAA+WGAHEGSLLLWVLLMSGWT+AVA+FSR ++ D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLAVMGMINVGFLLFIILTSNPFTRTLPDYPIDGRDLNPLLQDVGLIFHPPLLYMG  180
             VARVLAVMGM+  GFL FI++TS PF+RTLP +P++GRDLNPLLQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGfsvafafavasllaERLDSAWARWSRPWTQAAWSFLTLGIVLGSGWAYYELGWGGWW  240
            YVGFSVAFAFA+A+LL+ RLDSA +R +RPWT AAW FLTLGIVLGS+WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLMPWLVGTALLHSLSVTEKRGSFKAWTVLLAIGAFSLCLLGTFLVRSGVLV  300
            FWDPVENAS+MPWL GTALLHS++VTE+R++FKAWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFLVIVIGGSLLLFAIKGNRVRARVTNSLWSRETFLLGNNLIlm  360
            SVHAFASDPARGMFILAF+V+V GGSLLLFA++G+RVR+RV N+LWSRE++LLGNN++LM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aatlvvllgtllplvHKQLGLGSISIGAPFFNTMFTLLMAPFALLLGVGPLVRWRRDEPQ  420
            AA LVVLLGTLLPLVHKQLGLGSIS+G PFFNTMFT LM PFALLLGVGPLVRW RD P+
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLRKlllialavtaalslllpwllqdslVAMTVVGLSMALWVFFLTVYELHSNSTRRHGL  480
            ++RKLL  A+  T  LS+LLPWLL+D ++AMT VG++MA W+  L+V    +++ +R + 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAV----AEAVQRVS-  475

Query  481  LRGLTKLSLSQWGMVCGHIGLAVTVVGIAFSQNYSVERDVRMRAGDSIQIHDYRFTFQGV  540
             RG TK SLS WGMV +H+GLAVT+ GIAFSQNYSVERDVRMRAGDS+ IHDYRFTF+ V
Sbjct  476  -RG-TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  RDVVGPNWHSGKGTIEVTRNGKPEATLKAEKRFYNTSGAIMTEAAIDAGVTRDLYAALGE  600
            RD+ GPN ++G + I VTR+G PEA L AEKR+YNTS  +MTEAAID+G+TRDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELDDGSWAVRLYYKPFVRWIWYGGGLMALGGILCMLDPRYRLRRAVREAS  650
            ELD+G+WAVRLYYKPFVRWIW GG LMALGG+LC+ DPRYR R+++ EA+
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

157) PCC21_025290 in NC_018525


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  651 bits (2462),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 476/650 (74%), Positives = 565/650 (87%), Gaps = 7/650 (1%)

Query  1    MMPEVGNYllclalgvalllSVYPLWGASRQDTCLMALARPLAWALFACILASFLVLVHA  60
            MMPE G+ LLCLALGVALLLSVYPLWG +R D+ +MA A  +AW LF C+ ++F+VLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   LVINDFTVLYVANNSNRALPVWYRVAAAWGAHEGSLLLWVLLMSGWTFAVAVFSRGMSLD  120
            +V+NDFTV YVA NSN  LPVWYRVAA+WGAHEGSLLLWVLLMSGWT+AVAVFSR ++ D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLAVMGMINVGFLLFIILTSNPFTRTLPDYPIDGRDLNPLLQDVGLIFHPPLLYMG  180
             VARVLAVMGM+  GFL FI++TS PF+RTLP +P++GRDLNPLLQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGfsvafafavasllaERLDSAWARWSRPWTQAAWSFLTLGIVLGSGWAYYELGWGGWW  240
            YVGFSVAFAFA+A+LL+ RLDSA +R +RPWT AAW FLTLGIVLGS+WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLMPWLVGTALLHSLSVTEKRGSFKAWTVLLAIGAFSLCLLGTFLVRSGVLV  300
            FWDPVENAS+MPWL GTALLHS++VTE+R++FKAWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFLVIVIGGSLLLFAIKGNRVRARVTNSIWSRETFLLGNNLIlm  360
            SVHAFASDPARGMFILAF+V+V GGSLLLFA++G+RVR+RV N++WSRE++LLGNN++LM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aatlvvllgtllplvHKQLGLGSISIGAPFFNTMFTLLMAPFALLLGVGPLVRWRRDEPQ  420
            AA LVVLLGTLLPLVHKQLGLGSIS+G PFFNTMFT LM PFALLLGVGPLVRW RD P+
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLRKlllialavtaalslllpwllQDAVVAMTVVGLSMALWVFFLTMYELHTSSTRRHGL  480
            ++RKLL  A+  T  LS+LLPWLL+D ++AMT VG++MA W+  L++ E     +R    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG---  477

Query  481  LRGLTKLSLSQWGMVCGHIGLAVTVVGIAFSQNYSVERDVRMRAGDSIAIHDYRFTFQGV  540
                TK SLS WGMV +H+GLAVT+ GIAFSQNYSVERDVRMRAGDS++IHDYRFTF+ V
Sbjct  478  ----TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  RDVVGPNWQSAKGTIEVTRNGKPEATLKAEKRFYNTSGAIMTEAAIDAGVTRDLYAALGE  600
            RD+ GPN +++ + I VTR+G PEA L AEKR+YNTS  +MTEAAID+G+TRDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  KLDDGSWAVRLYYKPFIRWIWYGGGLMALGGILCMFDPRYRLRRAVRETA  650
             LD+G+WAVRLYYKPF+RWIW GG LMALGG+LC+ DPRYR R+++ E++
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

158) Pat9b_2794 in NC_014837


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  651 bits (2462),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 465/644 (73%), Positives = 567/644 (89%), Gaps = 7/644 (1%)

Query  1    MMPEIGSFllclalglalllSIYPLWGAVRQDARLMALSRPLTVGMFACIAAAFLLLVHA  60
            MMPE G  LLCLALG+ALLLS+YPLWG  R DAR+MA +  ++  +F C+A+AF++LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FIVNDFTVAYVATNSNTLLPVYYRIAATWGAHEGSlllwvlllsswtlavaIFSRGMPQD  120
            F+VNDFTVAYVA NSNT LPV YR+AATWGAHEGSLLLWVLL+S+WTLAVA+FSR +P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  ALARVLSVMGMINLGFLLFITLTSNPFTRTLPNFPIDGSDLNPMLQDIGLIFHPPLLYMG  180
             +ARVL+VMGM+  GFL FI +TS PF+RTLP FP++G DLNP+LQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMAGRLDTAWARWSRPWTTAAWVFLTIGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLD+A +R +RPWT AAWVFLT+GIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALMHSLAVTEKRGSFKSWTVLLAITAFSLSLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTAL+HS+AVTE+R++FK+WT+LL+I AFSL LLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPARGMFILAFLVIVIGSSLLLYAIKGGQVRSRVQNEAWSRESFLLGNNvlli  360
            SVH+FASDPARGMFILAF+V+V G+SLLL+A++G +VRSRV+N  WSRES+LLGNNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISVGEPFFNTMFTWLMAPFALMLGIGPLVRWRRDEPQ  420
            AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLM PFAL+LG+GPLVRW RD P+
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLWKRLGIALVVTLILSIALPWLLQDRIEAMTVIGLLMSIWVILLTLMELHERATHRHTF  480
            +++K L  A+V TL+LS+ LPWLL+D+I AMT +G+ M+ W+ +L++ E  +R +     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  481  FKGLRHLTRSHWGMVLGHLGVAVTVIGIAFSTQYSVERDVRMKSGDNIDIHNYHFIFRDV  540
             +G +  + S WGMV +HLG+AVT+ GIAFS +YSVERDVRM++GD++ IH+Y+F FR+V
Sbjct  476  -RGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  HNLQGPNYSGGVAIIDVTRNGKPEAVLHAEKRFYTAARTMMTEAAISGGFTRDLYAALGE  600
            +++ GPNY GGVA+I+VTR+G PEAVLHAEKR+Y ++R +MTEAAI GG+TRDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELDDGSWAVRIYYKPFVRWIWFGGVFMAVGGLLCLLDPRYRSRK  644
            ELD+G+WAVR+YYKPFVRWIW GG++MA+GGLLCL DPRYR RK
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

159) SerAS12_3578 in NC_015566


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  647 bits (2445),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 472/650 (73%), Positives = 561/650 (87%), Gaps = 7/650 (1%)

Query  1    MMPETGSFllclalaislllsiYPQWGAARQDSRMMAVARPLTYGMFAAIALAFICLVHA  60
            MMPE G  LLCLAL+++LLLS+YP WG AR D+RMMA A  ++  +F  +A AF+ LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAANSNSQLPVYYRIAATWGAHEGslllwvlllscwslavalcsRSMPQD  120
            FVVNDFTVAYVA+NSN+QLPV YR+AATWGAHEGSLLLWVLL+S W+LAVA+ SR +P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLSVMGMITAGFLLFIIMTSNPFTRTLPNFPIDGSDLNPLLQDIGLIFHPPLLYMG  180
             VARVL+VMGM+ AGFL FI+ TS PF+RTLP FP++G DLNPLLQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMAGRLDTAWARWSRPWTTAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLD+A +R +RPWT AAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAITAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTAL+HS+AVTE+R+ FKAWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPARGMFILAYLVIVIGGSLLLYAVKGGQVRSRVQHETFSRETFLLGNNvlli  360
            SVH+FASDPARGMFILA++V+V GGSLLL+AV+G +VRSRV++   SRE++LLGNNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPT  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLWRRLSVALAITLVLSILLPWLLQDSIAGMTVVGLIMAVWVIILTLMELHERATHRHGF  480
            ++++ L  A+  TLVLS+LLPWLL+D I +MT VG+ MA W+ +L++ E  +R +     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  481  WRGLSHLSRSHWGMVLGHLGVAVTVIGIAFSQNYSVERDVRMKAGDSVDIHSYHFVFRDV  540
             RG +  S S WGMV +HLG+AVT+ GIAFSQNYSVERDVRM+AGDSV IH Y+F FR+V
Sbjct  476  -RG-TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  HDIRGPNYSGGVGIIDVTRNGKPEATLHAEKRYYSVARSMMTEAAIDGGFSRDLYAALGE  600
            +DI GPNY GGV++I+VTR+G PEA LHAEKR Y+ +R +MTEAAIDGG++RDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELDDGSWAVRLYYKPFVRWIWFGGVFMAIGGILCILDPRYRMSKKLKREG  650
            ELD+G+WAVRLYYKPFVRWIW GG++MA+GG+LC+ DPRYR  K L   G
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

160) SerAS13_3579 in NC_017573


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  647 bits (2445),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 472/650 (73%), Positives = 561/650 (87%), Gaps = 7/650 (1%)

Query  1    MMPETGSFllclalaislllsiYPQWGAARQDSRMMAVARPLTYGMFAAIALAFICLVHA  60
            MMPE G  LLCLAL+++LLLS+YP WG AR D+RMMA A  ++  +F  +A AF+ LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAANSNSQLPVYYRIAATWGAHEGslllwvlllscwslavalcsRSMPQD  120
            FVVNDFTVAYVA+NSN+QLPV YR+AATWGAHEGSLLLWVLL+S W+LAVA+ SR +P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLSVMGMITAGFLLFIIMTSNPFTRTLPNFPIDGSDLNPLLQDIGLIFHPPLLYMG  180
             VARVL+VMGM+ AGFL FI+ TS PF+RTLP FP++G DLNPLLQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMAGRLDTAWARWSRPWTTAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLD+A +R +RPWT AAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAITAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTAL+HS+AVTE+R+ FKAWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPARGMFILAYLVIVIGGSLLLYAVKGGQVRSRVQHETFSRETFLLGNNvlli  360
            SVH+FASDPARGMFILA++V+V GGSLLL+AV+G +VRSRV++   SRE++LLGNNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPT  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLWRRLSVALAITLVLSILLPWLLQDSIAGMTVVGLIMAVWVIILTLMELHERATHRHGF  480
            ++++ L  A+  TLVLS+LLPWLL+D I +MT VG+ MA W+ +L++ E  +R +     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  481  WRGLSHLSRSHWGMVLGHLGVAVTVIGIAFSQNYSVERDVRMKAGDSVDIHSYHFVFRDV  540
             RG +  S S WGMV +HLG+AVT+ GIAFSQNYSVERDVRM+AGDSV IH Y+F FR+V
Sbjct  476  -RG-TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  HDIRGPNYSGGVGIIDVTRNGKPEATLHAEKRYYSVARSMMTEAAIDGGFSRDLYAALGE  600
            +DI GPNY GGV++I+VTR+G PEA LHAEKR Y+ +R +MTEAAIDGG++RDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELDDGSWAVRLYYKPFVRWIWFGGVFMAIGGILCILDPRYRMSKKLKREG  650
            ELD+G+WAVRLYYKPFVRWIW GG++MA+GG+LC+ DPRYR  K L   G
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

161) M495_17370 in NC_021741


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  647 bits (2447),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 474/650 (73%), Positives = 562/650 (87%), Gaps = 7/650 (1%)

Query  1    MMPETGSFllclalaislllsiYPQWGAARQDRRMMAVARPLTYGMFAAIALAFICLVHA  60
            MMPE G  LLCLAL+++LLLS+YP WG AR D RMMA A  ++  +F  +A AF+ LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAANSNTQLPVYYRIAATWGAHEGslllwvlllscwslavalcsRSMPQD  120
            FVVNDFTVAYVA+NSNTQLPV YR+AATWGAHEGSLLLWVLL+S W+LAVA+ SR +P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLSVMGMITAGFLLFIIMTSNPFTRTLPNFPIDGSDLNPLLQDIGLIFHPPLLYMG  180
             VARVL+VMGM+ AGFL FI+ TS PF+RTLP FP++G DLNPLLQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMAGRLDTAWARWSRPWTTAAWVFLTMGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLD+A +R +RPWT AAWVFLT+GIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAITAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTAL+HS+AVTE+R+ FKAWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPARGMFILAYLVIVIGGSLLLYAVKGGQVRSRVQHETFSRETFLLGNNvlli  360
            SVH+FASDPARGMFILA++V+V GGSLLL+AV+G +VRSRV++   SRE++LLGNNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPT  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLWRRLSVALVITLVLSILLPWLLQDSIAGMTVVGLIMAVWVIILTLMELHERATHRHGF  480
            ++++ L  A+V TLVLS+LLPWLL+D I +MT VG+ MA W+ +L++ E  +R +     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  481  WRGLSHLSRSHWGMVLGHLGVAVTVIGIAFSQNYSVERDVRMKAGDSVDIHNYHFVFRDV  540
             RG +  S S WGMV +HLG+AVT+ GIAFSQNYSVERDVRM+AGDSV IH+Y+F FR+V
Sbjct  476  -RG-TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  HDIRGPNYSGGVGIIDVTRNGKPEATLHAEKRYYSVARSMMTEAAIDGGFSRDLYAALGE  600
            +DI GPNY GGV++I+VTR+G PEA LHAEKR Y+ +R +MTEAAIDGG++RDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELDDGSWAVRLYYKPFVRWIWFGGVFMALGGILCILDPRYRMSKKLKREG  650
            ELD+G+WAVRLYYKPFVRWIW GG++MALGG+LC+ DPRYR  K L   G
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

162) SerAS9_3577 in NC_015567


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  647 bits (2445),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 472/650 (73%), Positives = 561/650 (87%), Gaps = 7/650 (1%)

Query  1    MMPETGSFllclalaislllsiYPQWGAARQDSRMMAVARPLTYGMFAAIALAFICLVHA  60
            MMPE G  LLCLAL+++LLLS+YP WG AR D+RMMA A  ++  +F  +A AF+ LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAANSNSQLPVYYRIAATWGAHEGslllwvlllscwslavalcsRSMPQD  120
            FVVNDFTVAYVA+NSN+QLPV YR+AATWGAHEGSLLLWVLL+S W+LAVA+ SR +P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLSVMGMITAGFLLFIIMTSNPFTRTLPNFPIDGSDLNPLLQDIGLIFHPPLLYMG  180
             VARVL+VMGM+ AGFL FI+ TS PF+RTLP FP++G DLNPLLQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMAGRLDTAWARWSRPWTTAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLD+A +R +RPWT AAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAITAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTAL+HS+AVTE+R+ FKAWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPARGMFILAYLVIVIGGSLLLYAVKGGQVRSRVQHETFSRETFLLGNNvlli  360
            SVH+FASDPARGMFILA++V+V GGSLLL+AV+G +VRSRV++   SRE++LLGNNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPT  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLWRRLSVALAITLVLSILLPWLLQDSIAGMTVVGLIMAVWVIILTLMELHERATHRHGF  480
            ++++ L  A+  TLVLS+LLPWLL+D I +MT VG+ MA W+ +L++ E  +R +     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  481  WRGLSHLSRSHWGMVLGHLGVAVTVIGIAFSQNYSVERDVRMKAGDSVDIHSYHFVFRDV  540
             RG +  S S WGMV +HLG+AVT+ GIAFSQNYSVERDVRM+AGDSV IH Y+F FR+V
Sbjct  476  -RG-TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  HDIRGPNYSGGVGIIDVTRNGKPEATLHAEKRYYSVARSMMTEAAIDGGFSRDLYAALGE  600
            +DI GPNY GGV++I+VTR+G PEA LHAEKR Y+ +R +MTEAAIDGG++RDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELDDGSWAVRLYYKPFVRWIWFGGVFMAIGGILCILDPRYRMSKKLKREG  650
            ELD+G+WAVRLYYKPFVRWIW GG++MA+GG+LC+ DPRYR  K L   G
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

163) ccmF in NC_008800


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  647 bits (2447),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 464/650 (72%), Positives = 564/650 (87%), Gaps = 7/650 (1%)

Query  1    MMPEIGSFllclalaislllslYPQWGAARQDARMMATGRPLTYGMFATIALSFICLVYA  60
            MMPE G  LLCLAL+++LLLS+YP WG AR DARMMA++  ++  +F  +A +F+ LV A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVSYVAANSNSHLPVYYRIAATWGAHEGSlllwvlllscwslavalFSRSMPDD  120
            FVVNDFTV+YVA+NSN++LPV YR+AATWGAHEGSLLLWVLL+S W+LAVA+FSR +P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLSVLGMITGGFLLFIILTSNPFNRTLPDFPIDGNDLNPLLQDVGLIFHPPLLYMG  180
             VARVL+V+GM+ +GFL FI++TS PF RTLP FP++G DLNPLLQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMAGRLDSAWARWSRPWTQAAWVFLTMGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLDSA +R +RPWT AAWVFLT+GIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALIHSLAVTEKRGTFKAWTVLLAITAFSLCLMGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTAL+HS+AVTE+R+ FKAWT+LL+I AFSLCL+GTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPARGMFILAYLVIVIGGSLLLYAVKGAQVRSRTQHEVFSRETFLLGNNvlli  360
            SVH+FASDPARGMFILA++V+V GGSLLL+AV+G +VRSR ++ + SRE++LLGNNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPS  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLYKRLGVALVVTLLMSILVPWLLQDTIAGMTVVGLMMAIWVIILTVMELHERATHRHGF  480
            ++ K L  A+V TL++S+L+PWLL+D I +MT VG+ MA W+ +L+V E  +R +     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  481  WRGLSHLSRSHWGMVLGHLGVAVTVIGIAFSQNYSVERDVRMKAGDSIDIHDYHFVFRDV  540
             RG +  S S WGMV +HLG+AVT+ GIAFSQNYSVERDVRM+AGDS+ IHDY+F FR+V
Sbjct  476  -RG-TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  HDVKGPNYTGGVGIIDVTRNGKPEATLHAEKRYYSVARSMMTEAAIDGGLTRDLYAALGE  600
            +D+ GPNY GGV++I+VTR+G PEA LHAEKR Y+ +R +MTEAAIDGGLTRDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELDDGSWAVRLYYKPFVRWIWYGGVFMAIGGIFCMFDPRYRMSKKLKRGA  650
            ELD+G+WAVRLYYKPFVRWIW GG++MA+GG++C+ DPRYR  K L  ++
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

164) YE105_C2837 in NC_015224


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  647 bits (2447),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 464/650 (72%), Positives = 564/650 (87%), Gaps = 7/650 (1%)

Query  1    MMPEIGSFllclalaislllslYPQWGAARQDARMMATGRPLTYGMFATIALSFICLVYA  60
            MMPE G  LLCLAL+++LLLS+YP WG AR DARMMA++  ++  +F  +A +F+ LV A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVSYVAANSNSHLPVYYRIAATWGAHEGSlllwvlllscwslavalFSRSMPDD  120
            FVVNDFTV+YVA+NSN++LPV YR+AATWGAHEGSLLLWVLL+S W+LAVA+FSR +P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLSVLGMITGGFLLFIILTSNPFNRTLPDFPIDGNDLNPLLQDVGLIFHPPLLYMG  180
             VARVL+V+GM+ +GFL FI++TS PF RTLP FP++G DLNPLLQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMAGRLDSAWARWSRPWTQAAWVFLTMGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLDSA +R +RPWT AAWVFLT+GIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALIHSLAVTEKRGTFKAWTVLLAITAFSLCLMGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTAL+HS+AVTE+R+ FKAWT+LL+I AFSLCL+GTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPARGMFILAYLVIVIGGSLLLYAVKGAQVRSRTQHEVFSRETFLLGNNvlli  360
            SVH+FASDPARGMFILA++V+V GGSLLL+AV+G +VRSR ++ + SRE++LLGNNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPS  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLYKRLGVALVVTLLMSILVPWLLQDTIAGMTVVGLMMAIWVIILTVMELHERATHRHGF  480
            ++ K L  A+V TL++S+L+PWLL+D I +MT VG+ MA W+ +L+V E  +R +     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  481  WRGLSHLSRSHWGMVLGHLGVAVTVIGIAFSQNYSVERDVRMKAGDSIDIHDYHFVFRDV  540
             RG +  S S WGMV +HLG+AVT+ GIAFSQNYSVERDVRM+AGDS+ IHDY+F FR+V
Sbjct  476  -RG-TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  HDVKGPNYTGGVGIIDVTRNGKPEATLHAEKRYYSVARSMMTEAAIDGGLTRDLYAALGE  600
            +D+ GPNY GGV++I+VTR+G PEA LHAEKR Y+ +R +MTEAAIDGGLTRDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELDDGSWAVRLYYKPFVRWIWYGGVFMAIGGIFCMFDPRYRMSKKLKRGA  650
            ELD+G+WAVRLYYKPFVRWIW GG++MA+GG++C+ DPRYR  K L  ++
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

165) Y11_01361 in NC_017564


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  647 bits (2447),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 464/650 (72%), Positives = 564/650 (87%), Gaps = 7/650 (1%)

Query  1    MMPEIGSFllclalaislllslYPQWGAARQDARMMATGRPLTYGMFATIALSFICLVYA  60
            MMPE G  LLCLAL+++LLLS+YP WG AR DARMMA++  ++  +F  +A +F+ LV A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVSYVAANSNSHLPVYYRIAATWGAHEGSlllwvlllscwslavalFSRSMPDD  120
            FVVNDFTV+YVA+NSN++LPV YR+AATWGAHEGSLLLWVLL+S W+LAVA+FSR +P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLSVLGMITGGFLLFIILTSNPFNRTLPDFPIDGNDLNPLLQDVGLIFHPPLLYMG  180
             VARVL+V+GM+ +GFL FI++TS PF RTLP FP++G DLNPLLQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMAGRLDSAWARWSRPWTQAAWVFLTMGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLDSA +R +RPWT AAWVFLT+GIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALIHSLAVTEKRGTFKAWTVLLAITAFSLCLMGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTAL+HS+AVTE+R+ FKAWT+LL+I AFSLCL+GTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPARGMFILAYLVIVIGGSLLLYAVKGAQVRSRTQHEVFSRETFLLGNNvlli  360
            SVH+FASDPARGMFILA++V+V GGSLLL+AV+G +VRSR ++ + SRE++LLGNNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPS  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLYKRLGVALVVTLLMSILVPWLLQDTIAGMTVVGLMMAIWVIILTVMELHERATHRHGF  480
            ++ K L  A+V TL++S+L+PWLL+D I +MT VG+ MA W+ +L+V E  +R +     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  481  WRGLSHLSRSHWGMVLGHLGVAVTVIGIAFSQNYSVERDVRMKAGDSIDIHDYHFVFRDV  540
             RG +  S S WGMV +HLG+AVT+ GIAFSQNYSVERDVRM+AGDS+ IHDY+F FR+V
Sbjct  476  -RG-TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  HDVKGPNYTGGVGIIDVTRNGKPEATLHAEKRYYSVARSMMTEAAIDGGLTRDLYAALGE  600
            +D+ GPNY GGV++I+VTR+G PEA LHAEKR Y+ +R +MTEAAIDGGLTRDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELDDGSWAVRLYYKPFVRWIWYGGVFMAIGGIFCMFDPRYRMSKKLKRGA  650
            ELD+G+WAVRLYYKPFVRWIW GG++MA+GG++C+ DPRYR  K L  ++
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

166) ccmF in NC_021591


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  646 bits (2442),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 472/650 (73%), Positives = 560/650 (87%), Gaps = 7/650 (1%)

Query  1    MMPETGSFllclalaislllsiYPQWGAARQDRRMMAVARPLTYGMFAAIALAFICLVHA  60
            MMPE G  LLCLAL+++LLLS+YP WG AR D RMMA A  ++  +F  +A AF+ LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAANSNSQLPVYYRIAATWGAHEGslllwvlllscwslavalcsRSMPQD  120
            FVVNDFTVAYVA+NSN+QLPV YR+AATWGAHEGSLLLWVLL+S W+LAVA+ SR +P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLSVMGMITAGFLLFIIMTSNPFTRTLPNFPIDGSDLNPLLQDIGLIFHPPLLYMG  180
             VARVL+VMGM+ AGFL FI+ TS PF+RTLP FP++G DLNPLLQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMAGRLDTAWARWSRPWTTAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLD+A +R +RPWT AAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAITAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTAL+HS+AVTE+R+ FKAWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPARGMFILAYLVIVIGGSLLLYAVKGGQVRSRVQHETFSRETFLLGNNvlli  360
            SVH+FASDPARGMFILA++V+V GGSLLL+AV+G +VRSRV++   SRE++LLGNNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPT  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLWRRLSVALAITLVLSILLPWLLQDSIAGMTVVGLIMAVWVIILTLMELHERATHRHGF  480
            ++++ L  A+  TLVLS+LLPWLL+D I +MT VG+ MA W+ +L++ E  +R +     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  481  WRGLSHLSRSHWGMVLGHLGVAVTVIGIAFSQNYSVERDVRMKAGDSVDIHSYHFVFRDV  540
             RG +  S S WGMV +HLG+AVT+ GIAFSQNYSVERDVRM+AGDSV IH Y+F FR+V
Sbjct  476  -RG-TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  HDIRGPNYSGGVGIIDVTRNGKPEATLHAEKRYYSVARSMMTEAAIDGGFSRDLYAALGE  600
            +DI GPNY GGV++I+VTR+G PEA LHAEKR Y+ +R +MTEAAIDGG++RDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELDDGSWAVRLYYKPFVRWIWFGGVFMAIGGILCILDPRYRMNKKLKREG  650
            ELD+G+WAVRLYYKPFVRWIW GG++MA+GG+LC+ DPRYR  K L   G
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

167) M621_17925 in NC_021659


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  646 bits (2442),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 472/650 (73%), Positives = 560/650 (87%), Gaps = 7/650 (1%)

Query  1    MMPETGSFllclalaislllsiYPQWGAARQDRRMMAVARPLTYGMFAAIALAFICLVHA  60
            MMPE G  LLCLAL+++LLLS+YP WG AR D RMMA A  ++  +F  +A AF+ LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAANSNSQLPVYYRIAATWGAHEGslllwvlllscwslavalcsRSMPQD  120
            FVVNDFTVAYVA+NSN+QLPV YR+AATWGAHEGSLLLWVLL+S W+LAVA+ SR +P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLSVMGMITAGFLLFIIMTSNPFTRTLPNFPIDGSDLNPLLQDIGLIFHPPLLYMG  180
             VARVL+VMGM+ AGFL FI+ TS PF+RTLP FP++G DLNPLLQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMAGRLDTAWARWSRPWTTAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLD+A +R +RPWT AAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAITAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTAL+HS+AVTE+R+ FKAWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPARGMFILAYLVIVIGGSLLLYAVKGGQVRSRVQHETFSRETFLLGNNvlli  360
            SVH+FASDPARGMFILA++V+V GGSLLL+AV+G +VRSRV++   SRE++LLGNNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPT  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLWRRLSVALAITLVLSILLPWLLQDSIAGMTVVGLIMAVWVIILTLMELHERATHRHGF  480
            ++++ L  A+  TLVLS+LLPWLL+D I +MT VG+ MA W+ +L++ E  +R +     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  481  WRGLSHLSRSHWGMVLGHLGVAVTVIGIAFSQNYSVERDVRMKAGDSVDIHSYHFVFRDV  540
             RG +  S S WGMV +HLG+AVT+ GIAFSQNYSVERDVRM+AGDSV IH Y+F FR+V
Sbjct  476  -RG-TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  HDIRGPNYSGGVGIIDVTRNGKPEATLHAEKRYYSVARSMMTEAAIDGGFSRDLYAALGE  600
            +DI GPNY GGV++I+VTR+G PEA LHAEKR Y+ +R +MTEAAIDGG++RDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELDDGSWAVRLYYKPFVRWIWFGGVFMAIGGILCILDPRYRMNKKLKREG  650
            ELD+G+WAVRLYYKPFVRWIW GG++MA+GG+LC+ DPRYR  K L   G
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

168) ccmF in NC_014306


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  645 bits (2437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 461/644 (72%), Positives = 561/644 (88%), Gaps = 7/644 (1%)

Query  1    MMPEIGSFllclalaislllsiYPLWGAARQDRRLMGLARPLSFALFACILGAFAILVHA  60
            MMPE G  LLCLAL+++LLLS+YPLWG AR D R+M+ A  ++  LF C+ GAF +LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FIVNDFSVAYVATNSNTLLPVYYRIAATWGAHEGslllwllllstwtlAVALFSRGMPMD  120
            F+VNDF+VAYVA NSNT LPV YR+AATWGAHEGSLLLW+LL+S WTLAVA+FSR +P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  SIARVLAVMGMINLGFLLFITLTSNPFTRTLPDFPIDGSDLNPMLQDIGLIFHPPILYMG  180
             +ARVLAVMGM+  GFL FI +TS PF+RTLP FP++G DLNP+LQD GLIFHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMAGRLDTAWARWSRPWTTAAWVFLTVGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLD+A +R +RPWT AAWVFLT+GIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALIHSLAVTEKRGTFKAWTVLLAITAFSLSLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTAL+HS+AVTE+R+ FKAWT+LL+I AFSL LLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPSRGMFILAFLVIVIGSSLLLYAVKGSKVRSRVQNEVWSRESFLLGNNvlli  360
            SVH+FASDP+RGMFILAF+V+V G+SLLL+AV+G +VRSRV+N +WSRES+LLGNNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTLFTWLMAPMALMLGIGPLVRWRRDEPQ  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNT+FTWLM P AL+LG+GPLVRW RD P+
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLWKRLAVALVGTLVLSILLPWLMQDRIEAMAVVGLLMSIWVIFLTLMELHERATHRHSF  480
            +++K L  A+V TLVLS+LLPWL++D+I AM+ VG+ M+ W+  L++ E  +R ++    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG---  477

Query  481  LKGLTHLSRSHWGMVLGHLGVAVTVIGIAFSQNYSVERDVRMRAGDTVDIQNYHFTFRDV  540
                T  S S WGMV +HLG+AVT+ GIAFSQNYSVERDVRMRAGD+V I++Y+FTFR+V
Sbjct  478  ----TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  HNLQGPNYTGGVGIIDVTRNGKHEATLHAEKRYYSVAHTMMTEAAINGGFTRDLYAALGE  600
            +++ GPNY GGV++I+VTR+G  EA LHAEKR Y+ ++ +MTEAAI+GG+TRDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELGDNAWAVRIYYKPFVRWIWFGGLFMAVGGIFCLCDPRYRSRK  644
            EL++ AWAVR+YYKPFVRWIW GGL+MA+GG++CL DPRYR RK
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

169) W5S_2703 in NC_017845


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  641 bits (2422),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 473/650 (73%), Positives = 562/650 (87%), Gaps = 7/650 (1%)

Query  1    MMPEVGNYllclalgvalllSVYPLWGASRQDERLMALARPLSWVLFACILASFLVLVHA  60
            MMPE G+ LLCLALGVALLLSVYPLWG +R D R+MA A  ++W+LF C+ ++F+VLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   LVINDFTVLYVANNSNRALPVWYRVAAAWGAHEGSLLLWVLLMSGWTFAVAVFSRGMSLD  120
            +V+NDFTV YVA NSN  LPVWYRVAA+WGAHEGSLLLWVLLMSGWT+AVAVFSR ++ D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLAVMGMINVGFLLFIILTSNPFTRTLPDYPIDGRDLNPLLQDVGLIFHPPLLYMG  180
             VARVLAVMGM+  GFL FI++TS PF+RTLP +P++GRDLNPLLQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGfsvafafavasllaERLDSAWARWSRPWTQAAWSFLTLGIVLGSGWAYYELGWGGWW  240
            YVGFSVAFAFA+A+LL+ RLDSA +R +RPWT AAW FLTLGIVLGS+WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLMPWLVGTALLHSLSVTEKRGSFKAWTVLLAIGAFSLCLLGTFLVRSGVLV  300
            FWDPVENAS+MPWL GTALLHS++VTE+R++FKAWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFLVIVIGGSLLLFAIKGNRVRARVTNSLWSRETFLLGNNLIlm  360
            SVHAFASDPARGMFILAF+V+V GGSLLLFA++G+RVR+RV N+LWSRE++LLGNN++LM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aatlvvllgtllplvHKQLGLGSISIGAPFFNTMFTLLMAPFALLLGVGPLVRWRRDEPQ  420
            AA LVVLLGTLLPLVHKQLGLGSIS+G PFFNTMFT LM PFALLLGVGPLVRW RD P+
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLRKlllvamavtaalslllpwllqdslVAMTVVGLSMALWVFFLTVYELHSNstrrhgl  480
            ++RKLL  A+  T  LS+LLPWLL+D ++AMT VG++MA W+  L+V E     +R    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  lrglttlslsQWGMVCGHIGLAVTVVGIAFSQNYSVERDVRMRAGDSIQIHDYRFTFQGV  540
              +        WGMV +H+GLAVT+ GIAFSQNYSVERDVRMRAGDS+ IHDYRFTF+ V
Sbjct  481  SLSY-------WGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  QDVVGPNWHSGKGTIEVTRNGKPEAILTAEKRFYNTSGAIMTEAAIDAGVTRDLYAALGE  600
            +D+ GPN ++G + I VTR+G PEA+L AEKR+YNTS  +MTEAAID+G+TRDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELDDDSWAVRLYYKPFIRWIWYGGGLMALGGILCMFDPRYRLRRAVREIS  650
            ELD+++WAVRLYYKPF+RWIW GG LMALGG+LC+ DPRYR R+++ E +
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

170) Pecwa_2723 in NC_013421


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  641 bits (2422),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 473/650 (73%), Positives = 562/650 (87%), Gaps = 7/650 (1%)

Query  1    MMPEVGNYllclalgvalllSVYPLWGASRQDERLMALARPLSWVLFACILASFLVLVHA  60
            MMPE G+ LLCLALGVALLLSVYPLWG +R D R+MA A  ++W+LF C+ ++F+VLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   LVINDFTVLYVANNSNRALPVWYRVAAAWGAHEGSLLLWVLLMSGWTFAVAVFSRGMSLD  120
            +V+NDFTV YVA NSN  LPVWYRVAA+WGAHEGSLLLWVLLMSGWT+AVAVFSR ++ D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLAVMGMINVGFLLFIILTSNPFTRTLPDYPIDGRDLNPLLQDVGLIFHPPLLYMG  180
             VARVLAVMGM+  GFL FI++TS PF+RTLP +P++GRDLNPLLQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGfsvafafavasllaERLDSAWARWSRPWTQAAWSFLTLGIVLGSGWAYYELGWGGWW  240
            YVGFSVAFAFA+A+LL+ RLDSA +R +RPWT AAW FLTLGIVLGS+WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLMPWLVGTALLHSLSVTEKRGSFKAWTVLLAIGAFSLCLLGTFLVRSGVLV  300
            FWDPVENAS+MPWL GTALLHS++VTE+R++FKAWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFLVIVIGGSLLLFAIKGNRVRARVTNSLWSRETFLLGNNLIlm  360
            SVHAFASDPARGMFILAF+V+V GGSLLLFA++G+RVR+RV N+LWSRE++LLGNN++LM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aatlvvllgtllplvHKQLGLGSISIGAPFFNTMFTLLMAPFALLLGVGPLVRWRRDEPQ  420
            AA LVVLLGTLLPLVHKQLGLGSIS+G PFFNTMFT LM PFALLLGVGPLVRW RD P+
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLRKlllvamavtaalslllpwllqdslVAMTVVGLSMALWVFFLTVYELHSNstrrhgl  480
            ++RKLL  A+  T  LS+LLPWLL+D ++AMT VG++MA W+  L+V E     +R    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  lrglttlslsQWGMVCGHIGLAVTVVGIAFSQNYSVERDVRMRAGDSIQIHDYRFTFQGV  540
              +        WGMV +H+GLAVT+ GIAFSQNYSVERDVRMRAGDS+ IHDYRFTF+ V
Sbjct  481  SLSY-------WGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  QDVVGPNWHSGKGTIEVTRNGKPEAILTAEKRFYNTSGAIMTEAAIDAGVTRDLYAALGE  600
            +D+ GPN ++G + I VTR+G PEA+L AEKR+YNTS  +MTEAAID+G+TRDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELDDDSWAVRLYYKPFIRWIWYGGGLMALGGILCMFDPRYRLRRAVREIS  650
            ELD+++WAVRLYYKPF+RWIW GG LMALGG+LC+ DPRYR R+++ E +
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

171) ccmF in NC_004547


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  640 bits (2420),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 472/650 (73%), Positives = 562/650 (87%), Gaps = 7/650 (1%)

Query  1    MMPEVGNYllclalgvalllSVYPLWGASRQDERLMALARPLAWALFACILASFLVLVHA  60
            MMPE G+ LLCLALGVALLLSVYPLWG +R D R+MA A  +AW LF C+ ++F+VLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   LVINDFTVLYVANNSNRALPVWYRVAAAWGAHEGSLLLWVLLMSGWTFAVAVFSRGMSLD  120
            +V+NDFTV YVA NSN  LPVWYRVAA+WGAHEGSLLLWVLLMSGWT+AVAVFSR ++ D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLAVMGMINVGFLLFIILTSNPFTRTLPDYPIDGRDLNPLLQDVGLIFHPPLLYMG  180
             VARVLAVMGM+  GFL FI++TS PF+RTLP +P++GRDLNPLLQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGfsvafafavasllaERLDSAWARWSRPWTQAAWSFLTLGIVLGSGWAYYELGWGGWW  240
            YVGFSVAFAFA+A+LL+ RLDSA +R +RPWT AAW FLTLGIVLGS+WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLMPWLVGTALLHSLSVTEKRGSFKAWTVLLAIGAFSLCLLGTFLVRSGVLV  300
            FWDPVENAS+MPWL GTALLHS++VTE+R++FKAWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFLVIVIGGSLLLFAIKGNRVRARVTNSLWSRETFLLGNNLIlm  360
            SVHAFASDPARGMFILAF+V+V GGSLLLFA++G+RVR+RV N+LWSRE++LLGNN++LM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aatlvvllgtllplvHKQLGLGSISIGAPFFNTMFTLLMSPFALLLGVGPLVRWRRDEPQ  420
            AA LVVLLGTLLPLVHKQLGLGSIS+G PFFNTMFT LM PFALLLGVGPLVRW RD P+
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLRKlllvalavtaalslllpwllqdslVAMTVVGLSMALWVFFLTVYDLHANstrrhgl  480
            ++RKLL  A+  T  LS+LLPWLL+D ++AMT VG++MA W+  L+V +     +R    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  lrglttlslsQWGMVCGHIGLAVTVVGIAFSQNYSVERDVRMRAGDSIQIHDYRFTFQGV  540
              +        WGMV +H+GLAVT+ GIAFSQNYSVERDVRMRAGDS+ IHDYRFTF+ V
Sbjct  481  SLSY-------WGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  QNVVGPNWHSGKGTIEVTRNGKPEAILKAEKRFYNTSGAVMTEAAIDAGVTRDLYAALGE  600
            +++ GPN ++G + I VTR+G PEA+L AEKR+YNTS  VMTEAAID+G+TRDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  QLDDDSWAVRLYYKPFIRWIWYGGGLMALGGILCMFDPRYRLRRAVRETS  650
            +LD+++WAVRLYYKPF+RWIW GG LMALGG+LC+ DPRYR R+++ E++
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

172) D781_3173 in NC_020064


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  628 bits (2374),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 481/650 (74%), Positives = 566/650 (88%), Gaps = 7/650 (1%)

Query  1    MMPELGSFllclalavslllsIYPQWGAARQDSRMMAVARPLTYGMFAAIALAFICLVHA  60
            MMPE G  LLCLAL+V+LLLS+YP WG AR D+RMMA A  ++  +F  +A AF+ LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FIVNDFTVAYVAANSNTQLPVYYRIAATWGAHEGSlllwvlllscwslavalFSRSMPQD  120
            F+VNDFTVAYVA+NSNTQLPV YR+AATWGAHEGSLLLWVLL+S W+LAVA+FSR +P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLSVMGMITAGFLLFIIMTSNPFTRTLPNFPIDGRDLNPLLQDVGLIFHPPLLYMG  180
             VARVL+VMGM+ AGFL FI+ TS PF+RTLP FP++GRDLNPLLQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMAGRLDTAWARWSRPWTTAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLD+A +R +RPWT AAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAITAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTAL+HS+AVTE+R+ FKAWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPARGMFILAYLVIVIGGSLLLYAFKGGQVRSRVQHETFSRETFLLGNNvllm  360
            SVH+FASDPARGMFILA++V+V GGSLLL+A +G +VRSRV++   SRE++LLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMAPMALLLGIGPLVRWRRDEPS  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLM P ALLLG+GPLVRW RD P 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLWRRLGvalvvtlllsillpwllQDSIAGMTVVGLLMAVWVIVLTLMELHERATHRHGF  480
            ++++ L  A+V TL+LS+LLPWLL+D I +MT VG+ MA W+ VL++ E  +R +     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  481  WRGLRHLSRSHWGMVLGHLGVAVTVIGIAFSQNYSVERDVRMKAGDSVDIHDYHFVFRDV  540
             RG +  S S WGMV +HLG+AVT+ GIAFSQNYSVERDVRM+AGDSV IHDY+F FR+V
Sbjct  476  -RGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  HDIRGPNYTGGVGIIDVTRNGKAEATLHAEKRYYSVARSMMTEAAIDGGLTRDLYAALGE  600
            +DI GPNY GGV++I+VTR+G +EA LHAEKR Y+ +R +MTEAAIDGGLTRDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELDDGSWAVRLYYKPFVRWIWFGGVFMALGGLLCILDPRYRMKKKLARQG  650
            ELD+G+WAVRLYYKPFVRWIW GG++MALGGLLC+ DPRYR +K L+  G
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

173) Q7S_05730 in NC_017047


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  627 bits (2371),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 474/650 (73%), Positives = 561/650 (87%), Gaps = 7/650 (1%)

Query  1    MMPELGTFalclalglavllSIYPQWGAARQDGRMMAMARPLSYGMFACIALAFIILVHA  60
            MMPE G   LCLALG+A+LLS+YP WG AR D+RMMA A  ++  +F C+A AF++LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVANNSNTHLPVYYRVAATWGAHEGslllwvlllscwtlAVALFSRRMPQD  120
            FVVNDFTVAYVA NSNT+LPV YRVAATWGAHEGSLLLWVLL+S WTLAVA+FSR++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVSRVLAVMGMITGGFLLFILLTSNPFIRSLPNFPVDGSDLNPVLQDIGLIFHPPLLYMG  180
             V+RVLAVMGM+ +GFL FIL+TS PF R+LP FPV+G DLNP+LQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMAGRLDTAWARWSRPWTQAAWVFLTIGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLD+A +R +RPWT AAWVFLT+GIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALIHSLAVTEKRGTFKAWTVLLAITAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTAL+HS+AVTE+R+ FKAWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPARGMFILAYLVIVIGGSLLLYAFKGNSVRAPSRHELHSRESYllgnnvllv  360
            SVH+FASDPARGMFILA++V+V GGSLLL+A +G+ VR+   + L SRES LLGNNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplIHKQLGLGSISIGEPFFNTMFTWlmaplalllgigplVRWRRDEPS  420
            AAMLVVLLGTLLPL+HKQLGLGSIS+GEPFFNTMFTWLM P+ALLLG+GPLVRW RD P 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLWRRLGVALVVTLVLSILLPWLLQDKIVGMTVVGMLMSVWVIVLTLMELHERATHRHSF  480
            ++++ L  A+V TLVLS+LLPWLL+DKI++MT VGM M+ W+ VL++ E  +R +     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  481  WRGLTKLSRSHWGMVLGHLGVAVTVIGIAFSQNYSVERDVRMKSGDTVDIHDYHFIFRDV  540
             RG TK S S WGMV +HLG+AVT+ GIAFSQNYSVERDVRM++GD+V IHDY+F FR+V
Sbjct  476  -RG-TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  RDITGPNYTGGEANIDVTQNGKQVTTLHAEKRFYSVARSMMTEAAIDGNLARDLYAALGE  600
            RDITGPNY GG A I+VT++G   + LHAEKR+Y+ +R +MTEAAIDG L+RDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  EMDDGSWAVRLYYKPFVRWIWLGGLFMAAGGVLCILDPRYRMSKKLKKQG  650
            E+D+G+WAVRLYYKPFVRWIW GGL+MA GG+LC+ DPRYR  K L   G
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

174) Rahaq_1199 in NC_015061


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  627 bits (2371),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 474/650 (73%), Positives = 561/650 (87%), Gaps = 7/650 (1%)

Query  1    MMPELGTFalclalglavllSIYPQWGAARQDGRMMAMARPLSYGMFACIALAFIILVHA  60
            MMPE G   LCLALG+A+LLS+YP WG AR D+RMMA A  ++  +F C+A AF++LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVANNSNTHLPVYYRVAATWGAHEGslllwvlllscwtlAVALFSRRMPQD  120
            FVVNDFTVAYVA NSNT+LPV YRVAATWGAHEGSLLLWVLL+S WTLAVA+FSR++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVSRVLAVMGMITGGFLLFILLTSNPFIRSLPNFPVDGSDLNPVLQDIGLIFHPPLLYMG  180
             V+RVLAVMGM+ +GFL FIL+TS PF R+LP FPV+G DLNP+LQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMAGRLDTAWARWSRPWTQAAWVFLTIGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLD+A +R +RPWT AAWVFLT+GIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALIHSLAVTEKRGTFKAWTVLLAITAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTAL+HS+AVTE+R+ FKAWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPARGMFILAYLVIVIGGSLLLYAFKGNSVRAPSRHELHSRESYllgnnvllv  360
            SVH+FASDPARGMFILA++V+V GGSLLL+A +G+ VR+   + L SRES LLGNNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplIHKQLGLGSISIGEPFFNTMFTWlmaplalllgigplVRWRRDEPS  420
            AAMLVVLLGTLLPL+HKQLGLGSIS+GEPFFNTMFTWLM P+ALLLG+GPLVRW RD P 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLWRRLGVALVVTLVLSILLPWLLQDKIVGMTVVGMLMSVWVIVLTLMELHERATHRHSF  480
            ++++ L  A+V TLVLS+LLPWLL+DKI++MT VGM M+ W+ VL++ E  +R +     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  481  WRGLTKLSRSHWGMVLGHLGVAVTVIGIAFSQNYSVERDVRMKSGDTVDIHDYHFIFRDV  540
             RG TK S S WGMV +HLG+AVT+ GIAFSQNYSVERDVRM++GD+V IHDY+F FR+V
Sbjct  476  -RG-TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  RDITGPNYTGGEANIDVTQNGKQVTTLHAEKRFYSVARSMMTEAAIDGNLARDLYAALGE  600
            RDITGPNY GG A I+VT++G   + LHAEKR+Y+ +R +MTEAAIDG L+RDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  EMDDGSWAVRLYYKPFVRWIWLGGLFMAAGGVLCILDPRYRMSKKLKKQG  650
            E+D+G+WAVRLYYKPFVRWIW GGL+MA GG+LC+ DPRYR  K L   G
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

175) ccmF in NC_009708


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  625 bits (2361),  Expect = 3e-180, Method: Compositional matrix adjust.
 Identities = 446/628 (72%), Positives = 545/628 (87%), Gaps = 7/628 (1%)

Query  23   YPQWGAARQDARMMAVGRPLTYGMFAAITLSFICLIYAFVVNDFTVSYVAANSNSYLPIY  82
            YP WG AR DARMMA +  ++  +F  ++ +F+ L+ AFVVNDFTV+YVA+NSN+ LP+ 
Sbjct  23   YPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVW  82

Query  83   YRIAASWGAHEGSlllwvlllscwslavalFSRSMPEDAVARVLSVLGMITGGFLLFIIL  142
            YR+AA+WGAHEGSLLLWVLL+S W+LAVA+FSR +P D VARVL+V+GM+ +GFL FI++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  143  TSNPFSRTLPDFPIDGRDLNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDS  202
            TS PF+RTLP FP++GRDLNPLLQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLDS
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  203  AWARWSRPWTQAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALIHS  262
            A +R +RPWT AAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  263  LAVTEKRGTFKAWTVLLAITAFSLCLMGTFLVRSGVLVSVHSFASDPARGMFILAYLVIV  322
            +AVTE+R+ FKAWT+LL+I AFSLCL+GTFLVRSGVLVSVH+FASDPARGMFILA++V+V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  323  IGGSLLLYAVKGAQVRSRTQHEVFSRETFLLGNNvlliaamlvvllgtllplvHKQLGLG  382
             GGSLLL+AV+G +VRSR ++ + SRE++LLGNNVLL+AAMLVVLLGTLLPLVHKQLGLG
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  383  SISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPSKLWKRlsvalvvtlllsisvPW  442
            SIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P +++K L  A+V TL+LS+ +PW
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  443  LLQDSVAGMTVVGLMMAIWVIILTLMELHERATHRYGFWRGLTHLSRSHWGMVLGHLGVA  502
            LL+D + +MT VG+ MA W+ +L++ E  +R +      RG T  S S WGMV +HLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG-TKTSLSYWGMVAAHLGLA  495

Query  503  VTVIGIAFSQNYSVERDVRMKAGDSIDIHDYHFTFRDVHDIKGPNYTGGVGIIDVTRNGK  562
            VT+ GIAFSQNYSVERDVRM+AGDS+ IHDY+FTFR+V+DI GPNY GGV++I+VTR+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  LEATLHAEKRYYSVARSMMTEAAIDGGLTRDLYAALGEELGDGSWAVRLYYKPFVRWIWF  622
             EA LHAEKR Y+ +R +MTEAAIDGGLTRDLYAALGEEL++G+WAVRLYYKPFVRWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGIFMAVGGIFCMLDPRYRMSKKLKRGA  650
            GG++MA+GG++C+ DPRYR  K L  ++
Sbjct  616  GGLLMALGGLLCLADPRYRRRKPLPEAG  643

176) ccmF in NC_006155


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  625 bits (2361),  Expect = 3e-180, Method: Compositional matrix adjust.
 Identities = 446/628 (72%), Positives = 545/628 (87%), Gaps = 7/628 (1%)

Query  23   YPQWGAARQDARMMAVGRPLTYGMFAAITLSFICLIYAFVVNDFTVSYVAANSNSYLPIY  82
            YP WG AR DARMMA +  ++  +F  ++ +F+ L+ AFVVNDFTV+YVA+NSN+ LP+ 
Sbjct  23   YPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVW  82

Query  83   YRIAASWGAHEGSlllwvlllscwslavalFSRSMPEDAVARVLSVLGMITGGFLLFIIL  142
            YR+AA+WGAHEGSLLLWVLL+S W+LAVA+FSR +P D VARVL+V+GM+ +GFL FI++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  143  TSNPFSRTLPDFPIDGRDLNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDS  202
            TS PF+RTLP FP++GRDLNPLLQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLDS
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  203  AWARWSRPWTQAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALIHS  262
            A +R +RPWT AAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  263  LAVTEKRGTFKAWTVLLAITAFSLCLMGTFLVRSGVLVSVHSFASDPARGMFILAYLVIV  322
            +AVTE+R+ FKAWT+LL+I AFSLCL+GTFLVRSGVLVSVH+FASDPARGMFILA++V+V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  323  IGGSLLLYAVKGAQVRSRTQHEVFSRETFLLGNNvlliaamlvvllgtllplvHKQLGLG  382
             GGSLLL+AV+G +VRSR ++ + SRE++LLGNNVLL+AAMLVVLLGTLLPLVHKQLGLG
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  383  SISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPSKLWKRlsvalvvtlllsisvPW  442
            SIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P +++K L  A+V TL+LS+ +PW
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  443  LLQDSVAGMTVVGLMMAIWVIILTLMELHERATHRYGFWRGLTHLSRSHWGMVLGHLGVA  502
            LL+D + +MT VG+ MA W+ +L++ E  +R +      RG T  S S WGMV +HLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG-TKTSLSYWGMVAAHLGLA  495

Query  503  VTVIGIAFSQNYSVERDVRMKAGDSIDIHDYHFTFRDVHDIKGPNYTGGVGIIDVTRNGK  562
            VT+ GIAFSQNYSVERDVRM+AGDS+ IHDY+FTFR+V+DI GPNY GGV++I+VTR+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  LEATLHAEKRYYSVARSMMTEAAIDGGLTRDLYAALGEELGDGSWAVRLYYKPFVRWIWF  622
             EA LHAEKR Y+ +R +MTEAAIDGGLTRDLYAALGEEL++G+WAVRLYYKPFVRWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGIFMAVGGIFCMLDPRYRMSKKLKRGA  650
            GG++MA+GG++C+ DPRYR  K L  ++
Sbjct  616  GGLLMALGGLLCLADPRYRRRKPLPEAG  643

177) YPTS_2741 in NC_010634


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  625 bits (2361),  Expect = 3e-180, Method: Compositional matrix adjust.
 Identities = 446/628 (72%), Positives = 545/628 (87%), Gaps = 7/628 (1%)

Query  23   YPQWGAARQDARMMAVGRPLTYGMFAAITLSFICLIYAFVVNDFTVSYVAANSNSYLPIY  82
            YP WG AR DARMMA +  ++  +F  ++ +F+ L+ AFVVNDFTV+YVA+NSN+ LP+ 
Sbjct  23   YPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVW  82

Query  83   YRIAASWGAHEGSlllwvlllscwslavalFSRSMPEDAVARVLSVLGMITGGFLLFIIL  142
            YR+AA+WGAHEGSLLLWVLL+S W+LAVA+FSR +P D VARVL+V+GM+ +GFL FI++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  143  TSNPFSRTLPDFPIDGRDLNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDS  202
            TS PF+RTLP FP++GRDLNPLLQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLDS
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  203  AWARWSRPWTQAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALIHS  262
            A +R +RPWT AAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  263  LAVTEKRGTFKAWTVLLAITAFSLCLMGTFLVRSGVLVSVHSFASDPARGMFILAYLVIV  322
            +AVTE+R+ FKAWT+LL+I AFSLCL+GTFLVRSGVLVSVH+FASDPARGMFILA++V+V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  323  IGGSLLLYAVKGAQVRSRTQHEVFSRETFLLGNNvlliaamlvvllgtllplvHKQLGLG  382
             GGSLLL+AV+G +VRSR ++ + SRE++LLGNNVLL+AAMLVVLLGTLLPLVHKQLGLG
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  383  SISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPSKLWKRlsvalvvtlllsisvPW  442
            SIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P +++K L  A+V TL+LS+ +PW
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  443  LLQDSVAGMTVVGLMMAIWVIILTLMELHERATHRYGFWRGLTHLSRSHWGMVLGHLGVA  502
            LL+D + +MT VG+ MA W+ +L++ E  +R +      RG T  S S WGMV +HLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG-TKTSLSYWGMVAAHLGLA  495

Query  503  VTVIGIAFSQNYSVERDVRMKAGDSIDIHDYHFTFRDVHDIKGPNYTGGVGIIDVTRNGK  562
            VT+ GIAFSQNYSVERDVRM+AGDS+ IHDY+FTFR+V+DI GPNY GGV++I+VTR+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  LEATLHAEKRYYSVARSMMTEAAIDGGLTRDLYAALGEELGDGSWAVRLYYKPFVRWIWF  622
             EA LHAEKR Y+ +R +MTEAAIDGGLTRDLYAALGEEL++G+WAVRLYYKPFVRWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGIFMAVGGIFCMLDPRYRMSKKLKRGA  650
            GG++MA+GG++C+ DPRYR  K L  ++
Sbjct  616  GGLLMALGGLLCLADPRYRRRKPLPEAG  643

178) YPK_1501 in NC_010465


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  625 bits (2361),  Expect = 3e-180, Method: Compositional matrix adjust.
 Identities = 446/628 (72%), Positives = 545/628 (87%), Gaps = 7/628 (1%)

Query  23   YPQWGAARQDARMMAVGRPLTYGMFAAITLSFICLIYAFVVNDFTVSYVAANSNSYLPIY  82
            YP WG AR DARMMA +  ++  +F  ++ +F+ L+ AFVVNDFTV+YVA+NSN+ LP+ 
Sbjct  23   YPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVW  82

Query  83   YRIAASWGAHEGSlllwvlllscwslavalFSRSMPEDAVARVLSVLGMITGGFLLFIIL  142
            YR+AA+WGAHEGSLLLWVLL+S W+LAVA+FSR +P D VARVL+V+GM+ +GFL FI++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  143  TSNPFSRTLPDFPIDGRDLNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDS  202
            TS PF+RTLP FP++GRDLNPLLQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLDS
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  203  AWARWSRPWTQAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALIHS  262
            A +R +RPWT AAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  263  LAVTEKRGTFKAWTVLLAITAFSLCLMGTFLVRSGVLVSVHSFASDPARGMFILAYLVIV  322
            +AVTE+R+ FKAWT+LL+I AFSLCL+GTFLVRSGVLVSVH+FASDPARGMFILA++V+V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  323  IGGSLLLYAVKGAQVRSRTQHEVFSRETFLLGNNvlliaamlvvllgtllplvHKQLGLG  382
             GGSLLL+AV+G +VRSR ++ + SRE++LLGNNVLL+AAMLVVLLGTLLPLVHKQLGLG
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  383  SISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPSKLWKRlsvalvvtlllsisvPW  442
            SIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P +++K L  A+V TL+LS+ +PW
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  443  LLQDSVAGMTVVGLMMAIWVIILTLMELHERATHRYGFWRGLTHLSRSHWGMVLGHLGVA  502
            LL+D + +MT VG+ MA W+ +L++ E  +R +      RG T  S S WGMV +HLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG-TKTSLSYWGMVAAHLGLA  495

Query  503  VTVIGIAFSQNYSVERDVRMKAGDSIDIHDYHFTFRDVHDIKGPNYTGGVGIIDVTRNGK  562
            VT+ GIAFSQNYSVERDVRM+AGDS+ IHDY+FTFR+V+DI GPNY GGV++I+VTR+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  LEATLHAEKRYYSVARSMMTEAAIDGGLTRDLYAALGEELGDGSWAVRLYYKPFVRWIWF  622
             EA LHAEKR Y+ +R +MTEAAIDGGLTRDLYAALGEEL++G+WAVRLYYKPFVRWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGIFMAVGGIFCMLDPRYRMSKKLKRGA  650
            GG++MA+GG++C+ DPRYR  K L  ++
Sbjct  616  GGLLMALGGLLCLADPRYRRRKPLPEAG  643

179) A1122_12350 in NC_017168


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  625 bits (2361),  Expect = 3e-180, Method: Compositional matrix adjust.
 Identities = 445/628 (71%), Positives = 545/628 (87%), Gaps = 7/628 (1%)

Query  23   YPQWGAARQDARMMAVGRPLTYGMFAAITLSFICLIYAFVVNDFTVSYVAANSNSYLPIY  82
            YP WG AR DARMMA +  ++  +F  ++ +F+ L+ AFVVNDFTV+YVA+NSN+ LP+ 
Sbjct  23   YPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVW  82

Query  83   YRIAASWGAHEGSlllwvlllscwslavalFSRSMPEDAVARVLSVLGMITGGFLLFIIL  142
            YR+AA+WGAHEGSLLLWVLL+S W+LAVA+FSR +P D VARVL+V+GM+ +GFL FI++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  143  TSNPFSRTLPDFPIDGRDLNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDS  202
            TS PF+RTLP FP++GRDLNPLLQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLDS
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  203  AWARWSRPWTQAAWIFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALIHS  262
            A +R +RPWT AAW+FLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  263  LAVTEKRGTFKAWTVLLAITAFSLCLMGTFLVRSGVLVSVHSFASDPARGMFILAYLVIV  322
            +AVTE+R+ FKAWT+LL+I AFSLCL+GTFLVRSGVLVSVH+FASDPARGMFILA++V+V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  323  IGGSLLLYAVKGAQVRSRTQHEVFSRETFLLGNNvlliaamlvvllgtllplvHKQLGLG  382
             GGSLLL+AV+G +VRSR ++ + SRE++LLGNNVLL+AAMLVVLLGTLLPLVHKQLGLG
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  383  SISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPSKLWKRlsvalvvtlllsisvPW  442
            SIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P +++K L  A+V TL+LS+ +PW
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  443  LLQDSVAGMTVVGLMMAIWVIILTLMELHERATHRYGFWRGLTHLSRSHWGMVLGHLGVA  502
            LL+D + +MT VG+ MA W+ +L++ E  +R +      RG T  S S WGMV +HLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG-TKTSLSYWGMVAAHLGLA  495

Query  503  VTVIGIAFSQNYSVERDVRMKAGDSIDIHDYHFTFRDVHDIKGPNYTGGVGIIDVTRNGK  562
            VT+ GIAFSQNYSVERDVRM+AGDS+ IHDY+FTFR+V+DI GPNY GGV++I+VTR+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  LEATLHAEKRYYSVARSMMTEAAIDGGLTRDLYAALGEELGDGSWAVRLYYKPFVRWIWF  622
             EA LHAEKR Y+ +R +MTEAAIDGGLTRDLYAALGEEL++G+WAVRLYYKPFVRWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGIFMAVGGIFCMLDPRYRMSKKLKRGA  650
            GG++MA+GG++C+ DPRYR  K L  ++
Sbjct  616  GGLLMALGGLLCLADPRYRRRKPLPEAG  643

180) ccmF in NC_010159


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  625 bits (2361),  Expect = 3e-180, Method: Compositional matrix adjust.
 Identities = 445/628 (71%), Positives = 545/628 (87%), Gaps = 7/628 (1%)

Query  23   YPQWGAARQDARMMAVGRPLTYGMFAAITLSFICLIYAFVVNDFTVSYVAANSNSYLPIY  82
            YP WG AR DARMMA +  ++  +F  ++ +F+ L+ AFVVNDFTV+YVA+NSN+ LP+ 
Sbjct  23   YPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVW  82

Query  83   YRIAASWGAHEGSlllwvlllscwslavalFSRSMPEDAVARVLSVLGMITGGFLLFIIL  142
            YR+AA+WGAHEGSLLLWVLL+S W+LAVA+FSR +P D VARVL+V+GM+ +GFL FI++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  143  TSNPFSRTLPDFPIDGRDLNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDS  202
            TS PF+RTLP FP++GRDLNPLLQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLDS
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  203  AWARWSRPWTQAAWIFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALIHS  262
            A +R +RPWT AAW+FLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  263  LAVTEKRGTFKAWTVLLAITAFSLCLMGTFLVRSGVLVSVHSFASDPARGMFILAYLVIV  322
            +AVTE+R+ FKAWT+LL+I AFSLCL+GTFLVRSGVLVSVH+FASDPARGMFILA++V+V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  323  IGGSLLLYAVKGAQVRSRTQHEVFSRETFLLGNNvlliaamlvvllgtllplvHKQLGLG  382
             GGSLLL+AV+G +VRSR ++ + SRE++LLGNNVLL+AAMLVVLLGTLLPLVHKQLGLG
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  383  SISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPSKLWKRlsvalvvtlllsisvPW  442
            SIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P +++K L  A+V TL+LS+ +PW
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  443  LLQDSVAGMTVVGLMMAIWVIILTLMELHERATHRYGFWRGLTHLSRSHWGMVLGHLGVA  502
            LL+D + +MT VG+ MA W+ +L++ E  +R +      RG T  S S WGMV +HLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG-TKTSLSYWGMVAAHLGLA  495

Query  503  VTVIGIAFSQNYSVERDVRMKAGDSIDIHDYHFTFRDVHDIKGPNYTGGVGIIDVTRNGK  562
            VT+ GIAFSQNYSVERDVRM+AGDS+ IHDY+FTFR+V+DI GPNY GGV++I+VTR+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  LEATLHAEKRYYSVARSMMTEAAIDGGLTRDLYAALGEELGDGSWAVRLYYKPFVRWIWF  622
             EA LHAEKR Y+ +R +MTEAAIDGGLTRDLYAALGEEL++G+WAVRLYYKPFVRWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGIFMAVGGIFCMLDPRYRMSKKLKRGA  650
            GG++MA+GG++C+ DPRYR  K L  ++
Sbjct  616  GGLLMALGGLLCLADPRYRRRKPLPEAG  643

181) YPA_2105 in NC_008150


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  625 bits (2361),  Expect = 3e-180, Method: Compositional matrix adjust.
 Identities = 445/628 (71%), Positives = 545/628 (87%), Gaps = 7/628 (1%)

Query  23   YPQWGAARQDARMMAVGRPLTYGMFAAITLSFICLIYAFVVNDFTVSYVAANSNSYLPIY  82
            YP WG AR DARMMA +  ++  +F  ++ +F+ L+ AFVVNDFTV+YVA+NSN+ LP+ 
Sbjct  23   YPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVW  82

Query  83   YRIAASWGAHEGSlllwvlllscwslavalFSRSMPEDAVARVLSVLGMITGGFLLFIIL  142
            YR+AA+WGAHEGSLLLWVLL+S W+LAVA+FSR +P D VARVL+V+GM+ +GFL FI++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  143  TSNPFSRTLPDFPIDGRDLNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDS  202
            TS PF+RTLP FP++GRDLNPLLQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLDS
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  203  AWARWSRPWTQAAWIFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALIHS  262
            A +R +RPWT AAW+FLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  263  LAVTEKRGTFKAWTVLLAITAFSLCLMGTFLVRSGVLVSVHSFASDPARGMFILAYLVIV  322
            +AVTE+R+ FKAWT+LL+I AFSLCL+GTFLVRSGVLVSVH+FASDPARGMFILA++V+V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  323  IGGSLLLYAVKGAQVRSRTQHEVFSRETFLLGNNvlliaamlvvllgtllplvHKQLGLG  382
             GGSLLL+AV+G +VRSR ++ + SRE++LLGNNVLL+AAMLVVLLGTLLPLVHKQLGLG
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  383  SISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPSKLWKRlsvalvvtlllsisvPW  442
            SIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P +++K L  A+V TL+LS+ +PW
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  443  LLQDSVAGMTVVGLMMAIWVIILTLMELHERATHRYGFWRGLTHLSRSHWGMVLGHLGVA  502
            LL+D + +MT VG+ MA W+ +L++ E  +R +      RG T  S S WGMV +HLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG-TKTSLSYWGMVAAHLGLA  495

Query  503  VTVIGIAFSQNYSVERDVRMKAGDSIDIHDYHFTFRDVHDIKGPNYTGGVGIIDVTRNGK  562
            VT+ GIAFSQNYSVERDVRM+AGDS+ IHDY+FTFR+V+DI GPNY GGV++I+VTR+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  LEATLHAEKRYYSVARSMMTEAAIDGGLTRDLYAALGEELGDGSWAVRLYYKPFVRWIWF  622
             EA LHAEKR Y+ +R +MTEAAIDGGLTRDLYAALGEEL++G+WAVRLYYKPFVRWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGIFMAVGGIFCMLDPRYRMSKKLKRGA  650
            GG++MA+GG++C+ DPRYR  K L  ++
Sbjct  616  GGLLMALGGLLCLADPRYRRRKPLPEAG  643

182) ccmF in NC_005810


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  625 bits (2361),  Expect = 3e-180, Method: Compositional matrix adjust.
 Identities = 445/628 (71%), Positives = 545/628 (87%), Gaps = 7/628 (1%)

Query  23   YPQWGAARQDARMMAVGRPLTYGMFAAITLSFICLIYAFVVNDFTVSYVAANSNSYLPIY  82
            YP WG AR DARMMA +  ++  +F  ++ +F+ L+ AFVVNDFTV+YVA+NSN+ LP+ 
Sbjct  23   YPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVW  82

Query  83   YRIAASWGAHEGSlllwvlllscwslavalFSRSMPEDAVARVLSVLGMITGGFLLFIIL  142
            YR+AA+WGAHEGSLLLWVLL+S W+LAVA+FSR +P D VARVL+V+GM+ +GFL FI++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  143  TSNPFSRTLPDFPIDGRDLNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDS  202
            TS PF+RTLP FP++GRDLNPLLQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLDS
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  203  AWARWSRPWTQAAWIFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALIHS  262
            A +R +RPWT AAW+FLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  263  LAVTEKRGTFKAWTVLLAITAFSLCLMGTFLVRSGVLVSVHSFASDPARGMFILAYLVIV  322
            +AVTE+R+ FKAWT+LL+I AFSLCL+GTFLVRSGVLVSVH+FASDPARGMFILA++V+V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  323  IGGSLLLYAVKGAQVRSRTQHEVFSRETFLLGNNvlliaamlvvllgtllplvHKQLGLG  382
             GGSLLL+AV+G +VRSR ++ + SRE++LLGNNVLL+AAMLVVLLGTLLPLVHKQLGLG
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  383  SISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPSKLWKRlsvalvvtlllsisvPW  442
            SIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P +++K L  A+V TL+LS+ +PW
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  443  LLQDSVAGMTVVGLMMAIWVIILTLMELHERATHRYGFWRGLTHLSRSHWGMVLGHLGVA  502
            LL+D + +MT VG+ MA W+ +L++ E  +R +      RG T  S S WGMV +HLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG-TKTSLSYWGMVAAHLGLA  495

Query  503  VTVIGIAFSQNYSVERDVRMKAGDSIDIHDYHFTFRDVHDIKGPNYTGGVGIIDVTRNGK  562
            VT+ GIAFSQNYSVERDVRM+AGDS+ IHDY+FTFR+V+DI GPNY GGV++I+VTR+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  LEATLHAEKRYYSVARSMMTEAAIDGGLTRDLYAALGEELGDGSWAVRLYYKPFVRWIWF  622
             EA LHAEKR Y+ +R +MTEAAIDGGLTRDLYAALGEEL++G+WAVRLYYKPFVRWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGIFMAVGGIFCMLDPRYRMSKKLKRGA  650
            GG++MA+GG++C+ DPRYR  K L  ++
Sbjct  616  GGLLMALGGLLCLADPRYRRRKPLPEAG  643

183) ccmF in NC_003143


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  625 bits (2361),  Expect = 3e-180, Method: Compositional matrix adjust.
 Identities = 445/628 (71%), Positives = 545/628 (87%), Gaps = 7/628 (1%)

Query  23   YPQWGAARQDARMMAVGRPLTYGMFAAITLSFICLIYAFVVNDFTVSYVAANSNSYLPIY  82
            YP WG AR DARMMA +  ++  +F  ++ +F+ L+ AFVVNDFTV+YVA+NSN+ LP+ 
Sbjct  23   YPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVW  82

Query  83   YRIAASWGAHEGSlllwvlllscwslavalFSRSMPEDAVARVLSVLGMITGGFLLFIIL  142
            YR+AA+WGAHEGSLLLWVLL+S W+LAVA+FSR +P D VARVL+V+GM+ +GFL FI++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  143  TSNPFSRTLPDFPIDGRDLNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDS  202
            TS PF+RTLP FP++GRDLNPLLQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLDS
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  203  AWARWSRPWTQAAWIFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALIHS  262
            A +R +RPWT AAW+FLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  263  LAVTEKRGTFKAWTVLLAITAFSLCLMGTFLVRSGVLVSVHSFASDPARGMFILAYLVIV  322
            +AVTE+R+ FKAWT+LL+I AFSLCL+GTFLVRSGVLVSVH+FASDPARGMFILA++V+V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  323  IGGSLLLYAVKGAQVRSRTQHEVFSRETFLLGNNvlliaamlvvllgtllplvHKQLGLG  382
             GGSLLL+AV+G +VRSR ++ + SRE++LLGNNVLL+AAMLVVLLGTLLPLVHKQLGLG
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  383  SISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPSKLWKRlsvalvvtlllsisvPW  442
            SIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P +++K L  A+V TL+LS+ +PW
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  443  LLQDSVAGMTVVGLMMAIWVIILTLMELHERATHRYGFWRGLTHLSRSHWGMVLGHLGVA  502
            LL+D + +MT VG+ MA W+ +L++ E  +R +      RG T  S S WGMV +HLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG-TKTSLSYWGMVAAHLGLA  495

Query  503  VTVIGIAFSQNYSVERDVRMKAGDSIDIHDYHFTFRDVHDIKGPNYTGGVGIIDVTRNGK  562
            VT+ GIAFSQNYSVERDVRM+AGDS+ IHDY+FTFR+V+DI GPNY GGV++I+VTR+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  LEATLHAEKRYYSVARSMMTEAAIDGGLTRDLYAALGEELGDGSWAVRLYYKPFVRWIWF  622
             EA LHAEKR Y+ +R +MTEAAIDGGLTRDLYAALGEEL++G+WAVRLYYKPFVRWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGIFMAVGGIFCMLDPRYRMSKKLKRGA  650
            GG++MA+GG++C+ DPRYR  K L  ++
Sbjct  616  GGLLMALGGLLCLADPRYRRRKPLPEAG  643

184) ccmF in NC_017154


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  625 bits (2361),  Expect = 3e-180, Method: Compositional matrix adjust.
 Identities = 445/628 (71%), Positives = 545/628 (87%), Gaps = 7/628 (1%)

Query  23   YPQWGAARQDARMMAVGRPLTYGMFAAITLSFICLIYAFVVNDFTVSYVAANSNSYLPIY  82
            YP WG AR DARMMA +  ++  +F  ++ +F+ L+ AFVVNDFTV+YVA+NSN+ LP+ 
Sbjct  23   YPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVW  82

Query  83   YRIAASWGAHEGSlllwvlllscwslavalFSRSMPEDAVARVLSVLGMITGGFLLFIIL  142
            YR+AA+WGAHEGSLLLWVLL+S W+LAVA+FSR +P D VARVL+V+GM+ +GFL FI++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  143  TSNPFSRTLPDFPIDGRDLNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDS  202
            TS PF+RTLP FP++GRDLNPLLQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLDS
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  203  AWARWSRPWTQAAWIFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALIHS  262
            A +R +RPWT AAW+FLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  263  LAVTEKRGTFKAWTVLLAITAFSLCLMGTFLVRSGVLVSVHSFASDPARGMFILAYLVIV  322
            +AVTE+R+ FKAWT+LL+I AFSLCL+GTFLVRSGVLVSVH+FASDPARGMFILA++V+V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  323  IGGSLLLYAVKGAQVRSRTQHEVFSRETFLLGNNvlliaamlvvllgtllplvHKQLGLG  382
             GGSLLL+AV+G +VRSR ++ + SRE++LLGNNVLL+AAMLVVLLGTLLPLVHKQLGLG
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  383  SISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPSKLWKRlsvalvvtlllsisvPW  442
            SIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P +++K L  A+V TL+LS+ +PW
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  443  LLQDSVAGMTVVGLMMAIWVIILTLMELHERATHRYGFWRGLTHLSRSHWGMVLGHLGVA  502
            LL+D + +MT VG+ MA W+ +L++ E  +R +      RG T  S S WGMV +HLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG-TKTSLSYWGMVAAHLGLA  495

Query  503  VTVIGIAFSQNYSVERDVRMKAGDSIDIHDYHFTFRDVHDIKGPNYTGGVGIIDVTRNGK  562
            VT+ GIAFSQNYSVERDVRM+AGDS+ IHDY+FTFR+V+DI GPNY GGV++I+VTR+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  LEATLHAEKRYYSVARSMMTEAAIDGGLTRDLYAALGEELGDGSWAVRLYYKPFVRWIWF  622
             EA LHAEKR Y+ +R +MTEAAIDGGLTRDLYAALGEEL++G+WAVRLYYKPFVRWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGIFMAVGGIFCMLDPRYRMSKKLKRGA  650
            GG++MA+GG++C+ DPRYR  K L  ++
Sbjct  616  GGLLMALGGLLCLADPRYRRRKPLPEAG  643

185) ccmF in NC_017160


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  625 bits (2361),  Expect = 3e-180, Method: Compositional matrix adjust.
 Identities = 445/628 (71%), Positives = 545/628 (87%), Gaps = 7/628 (1%)

Query  23   YPQWGAARQDARMMAVGRPLTYGMFAAITLSFICLIYAFVVNDFTVSYVAANSNSYLPIY  82
            YP WG AR DARMMA +  ++  +F  ++ +F+ L+ AFVVNDFTV+YVA+NSN+ LP+ 
Sbjct  23   YPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVW  82

Query  83   YRIAASWGAHEGSlllwvlllscwslavalFSRSMPEDAVARVLSVLGMITGGFLLFIIL  142
            YR+AA+WGAHEGSLLLWVLL+S W+LAVA+FSR +P D VARVL+V+GM+ +GFL FI++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  143  TSNPFSRTLPDFPIDGRDLNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDS  202
            TS PF+RTLP FP++GRDLNPLLQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLDS
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  203  AWARWSRPWTQAAWIFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALIHS  262
            A +R +RPWT AAW+FLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  263  LAVTEKRGTFKAWTVLLAITAFSLCLMGTFLVRSGVLVSVHSFASDPARGMFILAYLVIV  322
            +AVTE+R+ FKAWT+LL+I AFSLCL+GTFLVRSGVLVSVH+FASDPARGMFILA++V+V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  323  IGGSLLLYAVKGAQVRSRTQHEVFSRETFLLGNNvlliaamlvvllgtllplvHKQLGLG  382
             GGSLLL+AV+G +VRSR ++ + SRE++LLGNNVLL+AAMLVVLLGTLLPLVHKQLGLG
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  383  SISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPSKLWKRlsvalvvtlllsisvPW  442
            SIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P +++K L  A+V TL+LS+ +PW
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  443  LLQDSVAGMTVVGLMMAIWVIILTLMELHERATHRYGFWRGLTHLSRSHWGMVLGHLGVA  502
            LL+D + +MT VG+ MA W+ +L++ E  +R +      RG T  S S WGMV +HLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG-TKTSLSYWGMVAAHLGLA  495

Query  503  VTVIGIAFSQNYSVERDVRMKAGDSIDIHDYHFTFRDVHDIKGPNYTGGVGIIDVTRNGK  562
            VT+ GIAFSQNYSVERDVRM+AGDS+ IHDY+FTFR+V+DI GPNY GGV++I+VTR+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  LEATLHAEKRYYSVARSMMTEAAIDGGLTRDLYAALGEELGDGSWAVRLYYKPFVRWIWF  622
             EA LHAEKR Y+ +R +MTEAAIDGGLTRDLYAALGEEL++G+WAVRLYYKPFVRWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGIFMAVGGIFCMLDPRYRMSKKLKRGA  650
            GG++MA+GG++C+ DPRYR  K L  ++
Sbjct  616  GGLLMALGGLLCLADPRYRRRKPLPEAG  643

186) ccmF in NC_004088


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  625 bits (2361),  Expect = 3e-180, Method: Compositional matrix adjust.
 Identities = 445/628 (71%), Positives = 545/628 (87%), Gaps = 7/628 (1%)

Query  23   YPQWGAARQDARMMAVGRPLTYGMFAAITLSFICLIYAFVVNDFTVSYVAANSNSYLPIY  82
            YP WG AR DARMMA +  ++  +F  ++ +F+ L+ AFVVNDFTV+YVA+NSN+ LP+ 
Sbjct  23   YPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVW  82

Query  83   YRIAASWGAHEGSlllwvlllscwslavalFSRSMPEDAVARVLSVLGMITGGFLLFIIL  142
            YR+AA+WGAHEGSLLLWVLL+S W+LAVA+FSR +P D VARVL+V+GM+ +GFL FI++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  143  TSNPFSRTLPDFPIDGRDLNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDS  202
            TS PF+RTLP FP++GRDLNPLLQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLDS
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  203  AWARWSRPWTQAAWIFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALIHS  262
            A +R +RPWT AAW+FLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  263  LAVTEKRGTFKAWTVLLAITAFSLCLMGTFLVRSGVLVSVHSFASDPARGMFILAYLVIV  322
            +AVTE+R+ FKAWT+LL+I AFSLCL+GTFLVRSGVLVSVH+FASDPARGMFILA++V+V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  323  IGGSLLLYAVKGAQVRSRTQHEVFSRETFLLGNNvlliaamlvvllgtllplvHKQLGLG  382
             GGSLLL+AV+G +VRSR ++ + SRE++LLGNNVLL+AAMLVVLLGTLLPLVHKQLGLG
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  383  SISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPSKLWKRlsvalvvtlllsisvPW  442
            SIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P +++K L  A+V TL+LS+ +PW
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  443  LLQDSVAGMTVVGLMMAIWVIILTLMELHERATHRYGFWRGLTHLSRSHWGMVLGHLGVA  502
            LL+D + +MT VG+ MA W+ +L++ E  +R +      RG T  S S WGMV +HLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG-TKTSLSYWGMVAAHLGLA  495

Query  503  VTVIGIAFSQNYSVERDVRMKAGDSIDIHDYHFTFRDVHDIKGPNYTGGVGIIDVTRNGK  562
            VT+ GIAFSQNYSVERDVRM+AGDS+ IHDY+FTFR+V+DI GPNY GGV++I+VTR+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  LEATLHAEKRYYSVARSMMTEAAIDGGLTRDLYAALGEELGDGSWAVRLYYKPFVRWIWF  622
             EA LHAEKR Y+ +R +MTEAAIDGGLTRDLYAALGEEL++G+WAVRLYYKPFVRWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGIFMAVGGIFCMLDPRYRMSKKLKRGA  650
            GG++MA+GG++C+ DPRYR  K L  ++
Sbjct  616  GGLLMALGGLLCLADPRYRRRKPLPEAG  643

187) YPN_2208 in NC_008149


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  625 bits (2361),  Expect = 3e-180, Method: Compositional matrix adjust.
 Identities = 445/628 (71%), Positives = 545/628 (87%), Gaps = 7/628 (1%)

Query  23   YPQWGAARQDARMMAVGRPLTYGMFAAITLSFICLIYAFVVNDFTVSYVAANSNSYLPIY  82
            YP WG AR DARMMA +  ++  +F  ++ +F+ L+ AFVVNDFTV+YVA+NSN+ LP+ 
Sbjct  23   YPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVW  82

Query  83   YRIAASWGAHEGSlllwvlllscwslavalFSRSMPEDAVARVLSVLGMITGGFLLFIIL  142
            YR+AA+WGAHEGSLLLWVLL+S W+LAVA+FSR +P D VARVL+V+GM+ +GFL FI++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  143  TSNPFSRTLPDFPIDGRDLNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDS  202
            TS PF+RTLP FP++GRDLNPLLQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLDS
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  203  AWARWSRPWTQAAWIFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALIHS  262
            A +R +RPWT AAW+FLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  263  LAVTEKRGTFKAWTVLLAITAFSLCLMGTFLVRSGVLVSVHSFASDPARGMFILAYLVIV  322
            +AVTE+R+ FKAWT+LL+I AFSLCL+GTFLVRSGVLVSVH+FASDPARGMFILA++V+V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  323  IGGSLLLYAVKGAQVRSRTQHEVFSRETFLLGNNvlliaamlvvllgtllplvHKQLGLG  382
             GGSLLL+AV+G +VRSR ++ + SRE++LLGNNVLL+AAMLVVLLGTLLPLVHKQLGLG
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  383  SISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPSKLWKRlsvalvvtlllsisvPW  442
            SIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P +++K L  A+V TL+LS+ +PW
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  443  LLQDSVAGMTVVGLMMAIWVIILTLMELHERATHRYGFWRGLTHLSRSHWGMVLGHLGVA  502
            LL+D + +MT VG+ MA W+ +L++ E  +R +      RG T  S S WGMV +HLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG-TKTSLSYWGMVAAHLGLA  495

Query  503  VTVIGIAFSQNYSVERDVRMKAGDSIDIHDYHFTFRDVHDIKGPNYTGGVGIIDVTRNGK  562
            VT+ GIAFSQNYSVERDVRM+AGDS+ IHDY+FTFR+V+DI GPNY GGV++I+VTR+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  LEATLHAEKRYYSVARSMMTEAAIDGGLTRDLYAALGEELGDGSWAVRLYYKPFVRWIWF  622
             EA LHAEKR Y+ +R +MTEAAIDGGLTRDLYAALGEEL++G+WAVRLYYKPFVRWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGIFMAVGGIFCMLDPRYRMSKKLKRGA  650
            GG++MA+GG++C+ DPRYR  K L  ++
Sbjct  616  GGLLMALGGLLCLADPRYRRRKPLPEAG  643

188) YPDSF_2021 in NC_009381


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  625 bits (2361),  Expect = 3e-180, Method: Compositional matrix adjust.
 Identities = 445/628 (71%), Positives = 545/628 (87%), Gaps = 7/628 (1%)

Query  23   YPQWGAARQDARMMAVGRPLTYGMFAAITLSFICLIYAFVVNDFTVSYVAANSNSYLPIY  82
            YP WG AR DARMMA +  ++  +F  ++ +F+ L+ AFVVNDFTV+YVA+NSN+ LP+ 
Sbjct  23   YPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVW  82

Query  83   YRIAASWGAHEGSlllwvlllscwslavalFSRSMPEDAVARVLSVLGMITGGFLLFIIL  142
            YR+AA+WGAHEGSLLLWVLL+S W+LAVA+FSR +P D VARVL+V+GM+ +GFL FI++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  143  TSNPFSRTLPDFPIDGRDLNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDS  202
            TS PF+RTLP FP++GRDLNPLLQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLDS
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  203  AWARWSRPWTQAAWIFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALIHS  262
            A +R +RPWT AAW+FLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  263  LAVTEKRGTFKAWTVLLAITAFSLCLMGTFLVRSGVLVSVHSFASDPARGMFILAYLVIV  322
            +AVTE+R+ FKAWT+LL+I AFSLCL+GTFLVRSGVLVSVH+FASDPARGMFILA++V+V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  323  IGGSLLLYAVKGAQVRSRTQHEVFSRETFLLGNNvlliaamlvvllgtllplvHKQLGLG  382
             GGSLLL+AV+G +VRSR ++ + SRE++LLGNNVLL+AAMLVVLLGTLLPLVHKQLGLG
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  383  SISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPSKLWKRlsvalvvtlllsisvPW  442
            SIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P +++K L  A+V TL+LS+ +PW
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  443  LLQDSVAGMTVVGLMMAIWVIILTLMELHERATHRYGFWRGLTHLSRSHWGMVLGHLGVA  502
            LL+D + +MT VG+ MA W+ +L++ E  +R +      RG T  S S WGMV +HLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG-TKTSLSYWGMVAAHLGLA  495

Query  503  VTVIGIAFSQNYSVERDVRMKAGDSIDIHDYHFTFRDVHDIKGPNYTGGVGIIDVTRNGK  562
            VT+ GIAFSQNYSVERDVRM+AGDS+ IHDY+FTFR+V+DI GPNY GGV++I+VTR+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  LEATLHAEKRYYSVARSMMTEAAIDGGLTRDLYAALGEELGDGSWAVRLYYKPFVRWIWF  622
             EA LHAEKR Y+ +R +MTEAAIDGGLTRDLYAALGEEL++G+WAVRLYYKPFVRWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGIFMAVGGIFCMLDPRYRMSKKLKRGA  650
            GG++MA+GG++C+ DPRYR  K L  ++
Sbjct  616  GGLLMALGGLLCLADPRYRRRKPLPEAG  643

189) ccmF in NC_014029


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  625 bits (2361),  Expect = 3e-180, Method: Compositional matrix adjust.
 Identities = 445/628 (71%), Positives = 545/628 (87%), Gaps = 7/628 (1%)

Query  23   YPQWGAARQDARMMAVGRPLTYGMFAAITLSFICLIYAFVVNDFTVSYVAANSNSYLPIY  82
            YP WG AR DARMMA +  ++  +F  ++ +F+ L+ AFVVNDFTV+YVA+NSN+ LP+ 
Sbjct  23   YPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVW  82

Query  83   YRIAASWGAHEGSlllwvlllscwslavalFSRSMPEDAVARVLSVLGMITGGFLLFIIL  142
            YR+AA+WGAHEGSLLLWVLL+S W+LAVA+FSR +P D VARVL+V+GM+ +GFL FI++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  143  TSNPFSRTLPDFPIDGRDLNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDS  202
            TS PF+RTLP FP++GRDLNPLLQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLDS
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  203  AWARWSRPWTQAAWIFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALIHS  262
            A +R +RPWT AAW+FLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  263  LAVTEKRGTFKAWTVLLAITAFSLCLMGTFLVRSGVLVSVHSFASDPARGMFILAYLVIV  322
            +AVTE+R+ FKAWT+LL+I AFSLCL+GTFLVRSGVLVSVH+FASDPARGMFILA++V+V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  323  IGGSLLLYAVKGAQVRSRTQHEVFSRETFLLGNNvlliaamlvvllgtllplvHKQLGLG  382
             GGSLLL+AV+G +VRSR ++ + SRE++LLGNNVLL+AAMLVVLLGTLLPLVHKQLGLG
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  383  SISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPSKLWKRlsvalvvtlllsisvPW  442
            SIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P +++K L  A+V TL+LS+ +PW
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  443  LLQDSVAGMTVVGLMMAIWVIILTLMELHERATHRYGFWRGLTHLSRSHWGMVLGHLGVA  502
            LL+D + +MT VG+ MA W+ +L++ E  +R +      RG T  S S WGMV +HLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG-TKTSLSYWGMVAAHLGLA  495

Query  503  VTVIGIAFSQNYSVERDVRMKAGDSIDIHDYHFTFRDVHDIKGPNYTGGVGIIDVTRNGK  562
            VT+ GIAFSQNYSVERDVRM+AGDS+ IHDY+FTFR+V+DI GPNY GGV++I+VTR+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  LEATLHAEKRYYSVARSMMTEAAIDGGLTRDLYAALGEELGDGSWAVRLYYKPFVRWIWF  622
             EA LHAEKR Y+ +R +MTEAAIDGGLTRDLYAALGEEL++G+WAVRLYYKPFVRWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGIFMAVGGIFCMLDPRYRMSKKLKRGA  650
            GG++MA+GG++C+ DPRYR  K L  ++
Sbjct  616  GGLLMALGGLLCLADPRYRRRKPLPEAG  643

190) Spro_3386 in NC_009832


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  624 bits (2359),  Expect = 5e-180, Method: Compositional matrix adjust.
 Identities = 473/650 (73%), Positives = 561/650 (87%), Gaps = 7/650 (1%)

Query  1    MMPETGSFllclalaislllsiYPQWGAARQDRRMMAVARPLTYGMFAAIALAFICLVHA  60
            MMPE G  LLCLAL+++LLLS+YP WG AR D RMMA A  ++  +F  +A AF+ LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVAANSNTQLPVYYRIAATWGAHEGslllwvlllscwslavalcsRAMPQD  120
            FVVNDFTVAYVA+NSNTQLPV YR+AATWGAHEGSLLLWVLL+S W+LAVA+ SR +P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLSVMGMITAGFLLFIIMTSNPFTRTLPNFPIDGSDLNPLLQDIGLIFHPPLLYMG  180
             VARVL+VMGM+ AGFL FI+ TS PF+RTLP FP++G DLNPLLQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMAGRLDTAWARWSRPWTTAAWVFLTMGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLD+A +R +RPWT AAWVFLT+GIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAITAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTAL+HS+AVTE+R+ FKAWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPARGMFILAYLVIVIGGSLLLYAVKGGQVRSRVQHETFSRETFLLGNNvlli  360
            SVH+FASDPARGMFILA++V+V GGSLLL+AV+G +VRSRV++   SRE++LLGNNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aatlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWLMAPMALLMGIGPLVRWRRDEPT  420
            AA LVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLM P ALL+G+GPLVRW RD P 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLWRRLSVALVITlvlsvllpwllQDSIAGMTVVGLIMAVWVIILTLMELHERATHRHGF  480
            ++++ L  A+V TLVLSVLLPWLL+D I +MT VG+ MA W+ +L++ E  +R +     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  481  WRGLSHLSRSHWGMVLGHLGVAVTVIGIAFSQNYSVERDVRMKAGDSVDIHNYHFVFRDV  540
             RG +  S S WGMV +HLG+AVT+ GIAFSQNYSVERDVRM+AGDSV IH+Y+F FR+V
Sbjct  476  -RG-TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  HDIRGPNYTGGVGIIDVTRNGKPEATLHAEKRYYSVARSMMTEAAIDGGFSRDLYAALGE  600
            +DI GPNY GGV++I+VTR+G PEA LHAEKR Y+ +R +MTEAAIDGG++RDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELDDGSWAVRLYYKPFVRWIWFGGVFMAVGGILCILDPRYRMSKKLKREG  650
            ELD+G+WAVRLYYKPFVRWIW GG++MA+GG+LC+ DPRYR  K L   G
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

191) ESA_00874 in NC_009778


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  623 bits (2356),  Expect = 8e-180, Method: Compositional matrix adjust.
 Identities = 448/598 (75%), Positives = 527/598 (89%), Gaps = 7/598 (1%)

Query  47   FACLISAFLILVHAFVVNDFTVLYVASNSNTELPVWYRVAATWGAHEGSLLLWVLLMGAW  106
            F C+ +AF++LVHAFVVNDFTV YVA+NSNT+LPVWYRVAATWGAHEGSLLLWVLLM++W
Sbjct  47   FICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGW  106

Query  107  TLAVAMFSRAMPQEAIARVLSVMGGINFCFLLFILLTSNPFTRTLPEYPIEGRDLNPLLQ  166
            TLAVA+FSR +P + +ARVL+VMG +   FL FIL+TS PF+RTLP +P+EGRDLNPLLQ
Sbjct  107  TLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQ  166

Query  167  DIGLIFHPPLLYMGYVGfsvafafavasLLTGRLDTAWARWSRPWTQAAWMFLTIGIVLG  226
            D GLIFHPPLLYMGYVGFSVAFAFA+A+LL+GRLD+A +R +RPWT AAW+FLT+GIVLG
Sbjct  167  DPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLG  226

Query  227  SAWAYYELGWGGWWFWDPVENASLMPWLAGTALMHSLAVTEKRGSFRAWTVLLAITAFSL  286
            SAWAYYELGWGGWWFWDPVENAS+MPWLAGTAL+HS+AVTE+R++F+AWT+LL+I AFSL
Sbjct  227  SAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSL  286

Query  287  CLLGTFLVRSGVLVSVHAFASDPARGMFilallviviggslllYAVKGGSVRARVGNALW  346
            CLLGTFLVRSGVLVSVHAFASDPARGMFILA++V+V GGSLLL+AV+G  VR+RV NALW
Sbjct  287  CLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALW  346

Query  347  SRESFLLGNNILLITAMlvvllgtllplvHKALGLGSISVGAPFFNVLFSALIVPFALLL  406
            SRES+LLGNN+LL++AMLVVLLGTLLPLVHK LGLGSISVG PFFN +F+ L+VPFALLL
Sbjct  347  SRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLL  406

Query  407  GVGPLVRWRRDEPQKlrrrllvalvvtlatSLMLPWLLQDSINAMTVAGLIMAVWVLVLT  466
            GVGPLVRW RD P+++R+ L  A+V TL  S++LPWLL+D I AMT  G+ MA W+ VL+
Sbjct  407  GVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLA  466

Query  467  LMELLERATHRHGLWRGLGKLSRSQWGMTLGHVGLAVTVIGIAFSQNYSVERDVRMTAGD  526
            + E ++R +      RG  K S S WGM  +H+GLAVT+ GIAFSQNYSVERDVRM AGD
Sbjct  467  VAEAVQRVS------RG-TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGD  519

Query  527  SVDIHHYRFVFREVRDAQGPNWRGAVGIIDVLRDGKPEATLRAEKRAYNSNRVVMTEAAI  586
            SV IH+YRF FREVRD  GPN RG+V++I+V R+G PEA L+AEKR YN++R+VMTEAAI
Sbjct  520  SVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAI  579

Query  587  DGGLTRDLYAALGEELDDGSWAVRLYYKPFVRWIWYggllmafggllcllDPRYRLRK  644
            DGGLTRDLYAALGEELD+G+WAVRLYYKPFVRWIW GGLLMA+GGLLCL DPRYR RK
Sbjct  580  DGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

192) PAGR_g1326 in NC_017554


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  618 bits (2334),  Expect = 4e-178, Method: Compositional matrix adjust.
 Identities = 454/623 (73%), Positives = 546/623 (88%), Gaps = 7/623 (1%)

Query  22   VYPLWGAWRQDARLMGMARPLAVGLFACVAGAFMLLVWAFIVNDFTVSYVVNNSNSLLPV  81
            VYPLWG  R DAR+M+ A  +A  LF CVAGAF +LV AF+VNDFTV+YV  NSN+ LPV
Sbjct  22   VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   YYRVAATWGAHEgslllwvlllsgwtlAVAIFSRGMPQDALARVLSVMGMINLGFLLFII  141
             YRVAATWGAHEGSLLLWVLL+SGWTLAVA+FSR +P D +ARVL+VMGM+  GFL FI+
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  LTSNPFSRTLPDFPVDGRDLNPMLQDIGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLD  201
            +TS PF+RTLP FPV+GRDLNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  202  TAWARWSRPWTTAAWLFLTIGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALMH  261
            +A +R +RPWT AAW+FLT+GIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+H
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  262  SLAVTEKRGTFKAWTVLLAITAFSLSLLGTFLVRSGVLVSVHAFASDPARGMFILAFLVI  321
            S+AVTE+R+ FKAWT+LL+I AFSL LLGTFLVRSGVLVSVHAFASDPARGMFILAF+V+
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  322  VIGSSLLLYAIKGGQVRSRVQNELWSRESFLLGNNvlliaamlvvllgtllplvHKQLGL  381
            V G+SLLL+A++G +VRSRV+N LWSRES+LLGNNVLL+AAMLVVLLGTLLPLVHKQLGL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  382  GSISVGEPFFNTMFSWLMAPLALMLGIGPLVRWRRDEPQKlvrrlliallvtllasvllP  441
            GSISVGEPFFNTMF+WLM P+AL+LG+GPLVRW RD P+++ + L  A++ TL+ SVLLP
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLP  441

Query  442  WWLQDRVEAMTVVGLLMAVWIILLTLMELHERATHRHRFFTGLRHLSRSHWGMVLGHLGV  501
            W L+D++ AMT VG+ MA WI +L++ E  +R ++  +  T+L     S WGMV +HLG+
Sbjct  442  WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTK--TSL-----SYWGMVAAHLGL  494

Query  502  GVTVIGIAFSTQYSVERDVRMKAGDSVDIHHYHFVFRDVQDLQGPNYSGGVAVIDVSHKG  561
            +VT+ GIAFS +YSVERDVRM+AGDSV IH+Y+F FR+V+D+ GPNY GGVA+I+V++ G
Sbjct  495  AVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  562  KPEAVLYAEKRFYSAARTMMTEAAIDGGFTRDLYAALGEELSDGSWAVRIYYKPFVRWIW  621
             PEAVL AEKR+Y+++R +MTEAAIDGG+TRDLYAALGEEL +G+WAVR+YYKPFVRWIW
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

Query  622  FGGLFMAVGGLFCLLDPRYRSRK  644
             GGL+MA+GGL+CL DPRYR RK
Sbjct  615  AGGLLMALGGLLCLADPRYRRRK  637

193) ccmF in NC_017531


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  617 bits (2331),  Expect = 8e-178, Method: Compositional matrix adjust.
 Identities = 453/623 (73%), Positives = 546/623 (88%), Gaps = 7/623 (1%)

Query  22   VYPLWGAWRLDARLMGMARPLAVGLFACVAGAFMLLVWAFIVNDFTVSYVVNNSNSLLPV  81
            VYPLWG  R DAR+M+ A  +A  LF CVAGAF +LV AF+VNDFTV+YV  NSN+ LPV
Sbjct  22   VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   YYRIAATWGAHEgslllwvlllsgwtlAVAIFSRGMPQDALARVLSVMGMINLGFLLFII  141
             YR+AATWGAHEGSLLLWVLL+SGWTLAVA+FSR +P D +ARVL+VMGM+  GFL FI+
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  LTSNPFSRTLPDFPVDGRDLNPMLQDIGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLD  201
            +TS PF+RTLP FPV+GRDLNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  202  TAWARWSRPWSTAAWLFLTIGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALMH  261
            +A +R +RPW+ AAW+FLT+GIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+H
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  262  SLAVTEKRGTFKAWTVLLAITAFSLSLLGTFLVRSGVLVSVHAFASDPARGMFILAFLVI  321
            S+AVTE+R+ FKAWT+LL+I AFSL LLGTFLVRSGVLVSVHAFASDPARGMFILAF+V+
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  322  VIGSSLLLYAIKGGQVRSRVQNELWSRESFLLGNNvlliaamlvvllgtllplvHKQLGL  381
            V G+SLLL+A++G +VRSRV+N LWSRES+LLGNNVLL+AAMLVVLLGTLLPLVHKQLGL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  382  GSISVGEPFFNTMFSWLMAPLALMLGIGPLVRWRRDEPQKlvrrlliallvtllasvllP  441
            GSISVGEPFFNTMF+WLM P+AL+LG+GPLVRW RD P+++ + L  A++ TL+ SVLLP
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLP  441

Query  442  WWLQDRVEAMTVVGLLMAVWIILLTLMELHERATHRHRFFTGLRHLSRSHWGMVLGHLGV  501
            W L+D++ AMT VG+ MA WI +L++ E  +R ++  +  T+L     S WGMV +HLG+
Sbjct  442  WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTK--TSL-----SYWGMVAAHLGL  494

Query  502  GVTVIGIAFSTQYSVERDVRMKAGDSVDIHHYHFVFRDVQDLQGPNYSGGVAVIDVSRKG  561
            +VT+ GIAFS +YSVERDVRM+AGDSV IH+Y+F FR+V+D+ GPNY GGVA+I+V+R G
Sbjct  495  AVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  562  KPEAVLYAEKRFYSAARTMMTEAAIDGGFTRDLYAALGEELSDGSWAVRIYYKPFVRWIW  621
             PEAVL AEKR+Y+++R +MTEAAIDGG+TRDLYAALGEEL +G+WAVR+YYKPFVRWIW
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

Query  622  FGGLFMAVGGLFCLLDPRYRSRK  644
             GGL+MA+GGL+CL DPRYR RK
Sbjct  615  AGGLLMALGGLLCLADPRYRRRK  637

194) ccmF in NC_016816


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  616 bits (2326),  Expect = 2e-177, Method: Compositional matrix adjust.
 Identities = 453/623 (73%), Positives = 546/623 (88%), Gaps = 7/623 (1%)

Query  22   VYPLWGAWRLDARLMGMARPLAVGLFACVAGAFMLLVWAFIVNDFTVSYVVNNSNSLLPV  81
            VYPLWG  R DAR+M+ A  +A  LF CVAGAF +LV AF+VNDFTV+YV  NSN+ LPV
Sbjct  22   VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   YYRIAATWGAHEgslllwvlllsgwtlAVAIFSRGMPQDALARVLSVMGMINLGFLLFII  141
             YR+AATWGAHEGSLLLWVLL+SGWTLAVA+FSR +P D +ARVL+VMGM+  GFL FI+
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  LTSNPFSRTLPDFPVDGRDLNPMLQDIGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLD  201
            +TS PF+RTLP FPV+GRDLNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  202  TAWARWSRPWTTAAWLFLTIGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALMH  261
            +A +R +RPWT AAW+FLT+GIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+H
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  262  SLAVTEKRGTFKAWTVLLAITAFSLSLLGTFLVRSGVLVSVHAFASDPARGMFILAFLVI  321
            S+AVTE+R+ FKAWT+LL+I AFSL LLGTFLVRSGVLVSVHAFASDPARGMFILAF+V+
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  322  VIGSSLLLYAIKGGQVRSRVQNELWSRESFLLGNNvlliaamlvvllgtllplvHKQLGL  381
            V G+SLLL+A++G +VRSRV+N LWSRES+LLGNNVLL+AAMLVVLLGTLLPLVHKQLGL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  382  GSISVGEPFFNTMFSWLMAPLALMLGIGPLVRWRRDEPQKlvrrlliallvtllasvllP  441
            GSISVGEPFFNTMF+WLM P+AL+LG+GPLVRW RD P+++ + L  A++ TL+ SVLLP
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLP  441

Query  442  WWLQDRVEAMTVVGLLMAVWIILLTLMELHERATHRHRFFTGLRHLSRSHWGMVLGHLGV  501
            W L+D++ AMT VG+ MA WI +L++ E  +R ++  +  T+L     S WGMV +HLG+
Sbjct  442  WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTK--TSL-----SYWGMVAAHLGL  494

Query  502  GVTVIGIAFSTQYSVERDVRMKAGDSVDIHHYHFVFRDVQDLQGPNYSGGVAVIDVSHKG  561
            +VT+ GIAFS +YSVERDVRM+AGDSV IH+Y+F FR+V+D+ GPNY GGVA+I+V++ G
Sbjct  495  AVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  562  KPEAVLYAEKRFYSAARTMMTEAAIDGGFTRDLYAALGEELSDGSWAVRIYYKPFVRWIW  621
             PEAVL AEKR+Y+++R +MTEAAIDGG+TRDLYAALGEEL +G+WAVR+YYKPFVRWIW
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

Query  622  FGGLFMAVGGLFCLLDPRYRSRK  644
             GGL+MA+GGL+CL DPRYR RK
Sbjct  615  AGGLLMALGGLLCLADPRYRRRK  637

195) ccmF in NC_013956


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  614 bits (2321),  Expect = 5e-177, Method: Compositional matrix adjust.
 Identities = 451/623 (73%), Positives = 545/623 (88%), Gaps = 7/623 (1%)

Query  22   VYPLWGAWRLDARLMGMARPLAVGLFACVAGAFMLLVWAFIVNDFTVSYVVNNSNSLLPV  81
            VYPLWG  R DAR+M+ A  +A  LF CVAGAF +LV AF+VNDFTV+YV  NSN+ LPV
Sbjct  22   VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   YYRIAATWGAHEgslllwvlllsgwtlAVAIFSRGMPQDALARVLSVMGMINLGFLLFII  141
             YR+AATWGAHEGSLLLWVLL+SGWTLAVA+FSR +P D +ARVL+VMGM+  GFL FI+
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  LTSNPFSRTLPDFPVDGRDLNPMLQDIGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLD  201
            +TS PF+RTLP FPV+GRDLNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  202  TAWARWSRPWTTAAWLFLTIGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALMH  261
            +A +R +RPWT AAW+FLT+GIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+H
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  262  SLAVTEKRGTFKAWTVLLAITAFSLSLLGTFLVRSGVLVSVHAFASDPARGMFILAFLVI  321
            S+AVTE+R+ FKAWT+LL+I AFSL LLGTFLVRSGVLVSVHAFASDPARGMFILAF+V+
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  322  VIGSSLLLYAIKGGQVRSRVQNELWSRESFLLGNNvlliaamlvvllgtllplvHKQLGL  381
            V G+SLLL+A++G +VRSRV+N LWSRES+LLGNNVLL+AAMLVVLLGTLLPLVHKQLGL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  382  GSISVGEPFFNTMFSWLMAPLALMLGIGPLVRWRRDEPQKlvrrlliallvtllasvllP  441
            GSISVGEPFFNTMF+WLM P+AL+LG+GPLVRW RD P+++ + L  A++ TL+ SVLLP
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLP  441

Query  442  WWLQDRVEAMTVVGLLMAVWIILLTLMELHERATHRHRFFTGLRHLSRSHWGMVLGHLGV  501
            W L+D++ AMT VG+ MA WI +L++ E  +R ++  +  T+L     S WGMV +HLG+
Sbjct  442  WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTK--TSL-----SYWGMVAAHLGL  494

Query  502  GVTVIGIAFSTQYSVERDVRMKAGDSVDIHHYHFVFRDVQDLQGPNYSGGVAVIDVSHKG  561
            +VT+ GIAFS +YSVERDVRM+AGDSV IH+Y+F FR+V+D+ GPNY GGVA+I+V++ G
Sbjct  495  AVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  562  KPEDVLYAEKRFYSAARTMMTEAAIDGGFTRDLYAALGEELSDGSWAVRIYYKPFVRWIW  621
             PE VL AEKR+Y+++R +MTEAAIDGG+TRDLYAALGEEL +G+WAVR+YYKPFVRWIW
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

Query  622  FGGLFMAVGGLFCLLDPRYRSRR  644
             GGL+MA+GGL+CL DPRYR R+
Sbjct  615  AGGLLMALGGLLCLADPRYRRRK  637

196) ST548_p3307 in NC_020181


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  613 bits (2316),  Expect = 1e-176, Method: Compositional matrix adjust.
 Identities = 445/627 (71%), Positives = 543/627 (87%), Gaps = 7/627 (1%)

Query  24   PSWGAMRQDARMMALAKPLSVAMFAAILGAFLILVYAFVVNDFTVLYVVSNSNTLLPVWY  83
            P WG  R DARMMA A  ++  +F  + GAF++LV AFVVNDFTV YV +NSNT LPVWY
Sbjct  24   PLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWY  83

Query  84   RVAATWGAHEGSLLLWVLLMSGWTCAVAALSRNIPLEASSRVLAVMGMISFCFLAFILLT  143
            RVAATWGAHEGSLLLWVLLMSGWT AVA +SR++P +  +RVLAVMGM+   FLAFIL+T
Sbjct  84   RVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFT  143

Query  144  SNPFVRTLPDFPIEGRDLNPMLQDIGLIFHPPMLYMGYVGFSVAFAFAIASLMTGRLDSA  203
            S PF RTLP FP+EGRDLNP+LQD GLIFHPP+LYMGYVGFSVAFAFAIA+L++GRLDSA
Sbjct  144  SGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSA  203

Query  204  WARWSRPWTLAAWSFLTVGIVLGSAWAYYELGWGGWWFWDPVENASLMPWLAGTALIHSL  263
             +R +RPWTLAAW FLT+GIVLGSAWAYYELGWGGWWFWDPVENAS+MPWLAGTAL+HS+
Sbjct  204  FTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSM  263

Query  264  SVTEKRGSFKSWTVllailafslcllGTFLVRSGVLISVHSFASDPTRGMFILALLVITI  323
            +VTE+R++FK+WT+LL+I AFSLCLLGTFLVRSGVL+SVH+FASDP+RGMFILA++V+  
Sbjct  264  AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVT  323

Query  324  GGSLLLFAIKGGKVRSRVRHELWSRESLLLGNNvlliaamlvvllgtllplihkllglgS  383
            GGSLLLFA++G +VRSRV + LWSRESLLLGNNVLL+AAMLVVLLGTLLPL+HK LGLGS
Sbjct  324  GGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGS  383

Query  384  ISIGEPFFNSLFIALMIPFSLLLGIGPLVRWRRDEFHKLRKRlliaavvaivlaialPWL  443
            IS+GEPFFN++F  LM+PF+LLLG+GPLVRW RD  +++RK L  A V ++VL++ LPWL
Sbjct  384  ISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWL  443

Query  444  MQDRVKAMTVVGLLMSLWAFVLTVMEVVERATDRHPFWRGLTRLGRSHWGMVAGHVGLVV  503
            ++D++ AMT VG+ M+ W  VL+V E V+R +      RG T+ + S WGMVA+H+GL V
Sbjct  444  LEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG-TKTSLSYWGMVAAHLGLAV  496

Query  504  TVIGIAFSQNYSIERDVRMKPGDSVDIHQYHFVFRDVRDITGPNYFGGEGVIEVSQNGHH  563
            T+ GIAFSQNYS+ERDVRM++GDSV IH+Y+F FR+VRDITGPNY GG ++I V+++G+ 
Sbjct  497  TITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEP  556

Query  564  VSTLRAEKRIYSSSRMEMTEAAIDGGLARDLYAALGEELADGSWAVRLYYKPFVRWIWFG  623
             + L+AEKR+Y++SRM MTEAAIDGGL+RDLYAALGEEL +G+WAVRLYYKPFVRWIW G
Sbjct  557  EAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAG  616

Query  624  GMLMAFGGVLCILDPRYRLRKSLPENA  650
            G+LMA+GG+LC+ DPRYR RK+LPE +
Sbjct  617  GLLMALGGLLCLADPRYRRRKPLPEAG  643

197) EAE_01225 in NC_015663


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  611 bits (2310),  Expect = 4e-176, Method: Compositional matrix adjust.
 Identities = 445/627 (71%), Positives = 541/627 (87%), Gaps = 7/627 (1%)

Query  24   PSWGAMRQDARMMALAKPLSVAMFAAILGAFLILVYAFVVNDFTVLYVVSNSNTLLPVWY  83
            P WG  R DARMMA A  ++  +F  + GAF++LV AFVVNDFTV YV +NSNT LPVWY
Sbjct  24   PLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWY  83

Query  84   RVAATWGAHEGSLLLWVLLMSGWTCAVAALSRNIPLEASSRVLAVMGMISFCFLAFILLT  143
            RVAATWGAHEGSLLLWVLLMSGWT AVA +SR++P +  +RVLAVMGM+   FLAFIL+T
Sbjct  84   RVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFT  143

Query  144  SNPFVRTLPDFPIEGRDLNPMLQDIGLIFHPPMLYMGYVGFSVAFAFAIASLMTGRLDSA  203
            S PF RTLP FP+EGRDLNP+LQD GLIFHPP+LYMGYVGFSVAFAFAIA+L++GRLDSA
Sbjct  144  SGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSA  203

Query  204  WARWSRPWTLAAWSFLTVGIVLGSAWAYYELGWGGWWFWDPVENASLMPWLAGTALIHSL  263
             +R +RPWTLAAW FLT+GIVLGSAWAYYELGWGGWWFWDPVENAS+MPWLAGTAL+HS+
Sbjct  204  FTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSM  263

Query  264  SVTEKRGSFKSWTVllailafslcllGTFLVRSGVLISVHSFASDPTRGMFILALLVITI  323
            +VTE+R++FK+WT+LL+I AFSLCLLGTFLVRSGVL+SVH+FASDP+RGMFILA++V+  
Sbjct  264  AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVT  323

Query  324  GGSLLLFAIKGGKVRSRVRHELWSRESLLLGNNvlliaamlvvllgtllplihkllglgS  383
            GGSLLLFA++G +VRSRV + LWSRESLLLGNNVLL+AAMLVVLLGTLLPL+HK LGLGS
Sbjct  324  GGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGS  383

Query  384  ISIGEPFFNSLFIALMIPFSLLLGIGPLVHWRRDEFHKLRKRlliaavvavvlaialPWL  443
            IS+GEPFFN++F  LM+PF+LLLG+GPLV+W RD  +++RK L  A V ++VL++ LPWL
Sbjct  384  ISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWL  443

Query  444  MQDRIKAMTVVGLLMSLWAFVLTVMEVVERATDRHPFWRGLTRLGRSHWGMVAGHVGLVV  503
            ++D+I AMT VG+ M+ W  VL+V E V+R +      RG T+ + S WGMVA+H+GL V
Sbjct  444  LEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG-TKTSLSYWGMVAAHLGLAV  496

Query  504  TVIGIAFSQNYSIERDVRMKPGDSVDIHQYHFVFRDVRDITGPNYFGGEGVIEVSQNGRH  563
            T+ GIAFSQNYS+ERDVRM++GDSV IH+Y+F FR+VRDITGPNY GG ++I V+++G  
Sbjct  497  TITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEP  556

Query  564  VSTLRAEKRIYSSSRMEMTEAAIDGGLVRDLYAALGEELADGSWAVRLYYKPFVRWIWFG  623
             + L+AEKR+Y++SRM MTEAAIDGGL RDLYAALGEEL +G+WAVRLYYKPFVRWIW G
Sbjct  557  EAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAG  616

Query  624  GMLMAFGGVLCILDPRYRLRKSLPENA  650
            G+LMA+GG+LC+ DPRYR RK+LPE +
Sbjct  617  GLLMALGGLLCLADPRYRRRKPLPEAG  643

198) ccmF in NC_017933


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  610 bits (2303),  Expect = 1e-175, Method: Compositional matrix adjust.
 Identities = 467/644 (73%), Positives = 556/644 (87%), Gaps = 7/644 (1%)

Query  1    MMPEIGNFllclaaglallltlWPQWGAMRQAPQLMVlarplacalfacllgaflilVHA  60
            MMPE G+ LLCLA G+ALLL++ P WG  R  +++M  A  +A  LF C+ GAF++LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVLYVASNSNTELPVWYRVAAIWGAHEGSLLLWVLLMGAWTLAVAMFSRAMPQE  120
            FVVNDFTV YVA+NSNT+LPVWYRVAA WGAHEGSLLLWVLLM++WTLAVA+FSR +P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AIARVLSVMGGINFCFLLFILLTSNPFTRTLPEYPIEGRDLNPLLQDIGLIFHPPLLYMG  180
             +ARVL+VMG +   FL FIL+TS PF+RTLP +P+EGRDLNPLLQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGfsvafafavasLLTGRLDTAWARWSRPWTQAAWVFLTIGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFA+A+LL+GRLD+A +R +RPWT AAWVFLT+GIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLMPWLAGTALMHSLAVTEKRGSFRAWTVLLAITAFSLCLLGTFLVRSGVLV  300
            FWDPVENAS+MPWLAGTAL+HS+AVTE+R++F+AWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFilallviviggslllYAVKGGSVRARVGNALWSRESFLLGNNILLI  360
            SVHAFASDPARGMFILA++V+V GGSLLL+AV+G  VR+RV NALWSRES+LLGNN+LL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  TAMlvvllgtllplvHKALGLGSISVGAPFFNVLFSALMVPFALLLGVGPLMRWRRDEPQ  420
            +AMLVVLLGTLLPLVHK LGLGSISVG PFFN +F+ LMVPFALLLGVGPL+RW RD P+
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KlrrrllvalvvtlatSLMLPWFLQDSINAMTVAGLMMAVWVLALTLMELLERATHRHSL  480
            ++R+ L  A+V TL  S++LPW+L+D I AMT  G+ MA W+  L++ E ++R +     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  481  WRGLGKLSRSQWGMTLGHVGLAVTVIGIAFSQNYSVERDVRMTAGDSVDIHHYRFVFREV  540
             RG  K S S WGM  +H+GLAVT+ GIAFSQNYSVERDVRM AGDSV IH+YRF FREV
Sbjct  476  -RG-TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  RDAQGPNWRGAVGIIDVLRDGKPEATLRAEKRAYNSNRVVMTEAAIDGGLTRDLYAALGE  600
            RD  GPN RG+V++I+V R+G PEA L+AEKR YN++R+VMTEAAIDGGLTRDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELNDGSWAVRLYYKPFVRWIWYggllmtfggllcllDPRYRLKK  644
            EL++G+WAVRLYYKPFVRWIW GGLLM++GGLLCL DPRYR +K
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

199) ccmF in NC_013282


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  608 bits (2297),  Expect = 3e-175, Method: Compositional matrix adjust.
 Identities = 443/592 (75%), Positives = 519/592 (88%), Gaps = 7/592 (1%)

Query  58   VHAFVVNDFTVLYVASNSNTELPVWYRVAATWGAHEGSLLLWVLLMGAWTFAVAIFSRGM  117
            VHAFVVNDFTV YVA+NSNT+LPVWYRVAATWGAHEGSLLLWVLLM++WT+AVA+FSR +
Sbjct  58   VHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQV  117

Query  118  PQEAIARVLSVMGGINFCFLLFILLTSNPFTRTLPEFPIEGRDLNPLLQDIGLIFHPPLL  177
            P + +ARVL+VMG +   FL FIL+TS PF+RTLP FP+EGRDLNPLLQD GLIFHPPLL
Sbjct  118  PADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLL  177

Query  178  YMGYVGfsvafafavasLLTGRLDTAWARWSRPWTQAAWVFLTIGIVLGSAWAYYELGWG  237
            YMGYVGFSVAFAFA+A+LL+GRLD+A +R +RPWT AAWVFLT+GIVLGSAWAYYELGWG
Sbjct  178  YMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWG  237

Query  238  GWWFWDPVENASLMPWLAGTALMHSLAVTEKRGSFRAWTVLLAITAFSLCLLGTFLVRSG  297
            GWWFWDPVENAS+MPWLAGTAL+HS+AVTE+R++F+AWT+LL+I AFSLCLLGTFLVRSG
Sbjct  238  GWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSG  297

Query  298  VLVSVHAFASDPARGMFilallviviggslllYAVKGGSVRARVGNALWSRESFLLGNNI  357
            VLVSVHAFASDPARGMFILA++V+V GGSLLL+AV+G  VR+RV NALWSRES+LLGNN+
Sbjct  298  VLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNV  357

Query  358  LLITAMlvvllgtllplvHKALGLGSISVGAPFFNVLFCALMAPFALLLGVGPLVRWRRD  417
            LL++AMLVVLLGTLLPLVHK LGLGSISVG PFFN +F  LM PFALLLGVGPLVRW RD
Sbjct  358  LLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRD  417

Query  418  EPQKlrrrlltalvvtlaaSLILPWLLQDSVKAMTVAGLMMAVWVLVLTLMELIDRATHR  477
             P+++R+ L +A+V TL  S++LPWLL+D + AMT  G+ MA W+ VL++ E ++R +  
Sbjct  418  RPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS--  475

Query  478  YSLWRGLWKLSRSQWGMTLGHVGLAVTVTGIAFSQNYSVERDVRMTAGDSVDIHHYRFVF  537
                RG  K S S WGM  +H+GLAVT+TGIAFSQNYSVERDVRM AGDSV IH+YRF F
Sbjct  476  ----RGT-KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTF  530

Query  538  REVRDAQGPNWRGAVGIIDVLRDGKPEATLRAEKRAYNSNRVVMTEAAIDGGLTRDLYAA  597
            REVRD  GPN RG+V++I+V R+G PEA L+AEKR YN++R+VMTEAAIDGGLTRDLYAA
Sbjct  531  REVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAA  590

Query  598  LGEALDDGSWAVRLYYKPFVRWIWYggllmalggllcmlDPRYRLKKAQEAA  649
            LGE LD+G+WAVRLYYKPFVRWIW GGLLMALGGLLC+ DPRYR +K+   A
Sbjct  591  LGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEA  642

200) CSSP291_04440 in NC_020260


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  606 bits (2290),  Expect = 1e-174, Method: Compositional matrix adjust.
 Identities = 441/587 (76%), Positives = 516/587 (88%), Gaps = 7/587 (1%)

Query  58   VHAFVVNDFTVLYVASNSNTELPVWYRVAATWGAHEGSLLLWVLLMGAWTLAVAMFSRAM  117
            VHAFVVNDFTV YVA+NSNT+LPVWYRVAATWGAHEGSLLLWVLLM++WTLAVA+FSR +
Sbjct  58   VHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQV  117

Query  118  PQEAIARVLSVMGGINFCFLLFILLTSNPFTRTLPEYPIEGRDLNPLLQDIGLIFHPPLL  177
            P + +ARVL+VMG +   FL FIL+TS PF+RTLP +P+EGRDLNPLLQD GLIFHPPLL
Sbjct  118  PADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLL  177

Query  178  YMGYVGfsvafafavasLLTGRLDTAWARWSRPWTQAAWVFLTIGIVLGSAWAYYELGWG  237
            YMGYVGFSVAFAFA+A+LL+GRLD+A +R +RPWT AAWVFLT+GIVLGSAWAYYELGWG
Sbjct  178  YMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWG  237

Query  238  GWWFWDPVENASLMPWLAGTALMHSLAVTEKRGSFRAWTVLLAITAFSLCLLGTFLVRSG  297
            GWWFWDPVENAS+MPWLAGTAL+HS+AVTE+R++F+AWT+LL+I AFSLCLLGTFLVRSG
Sbjct  238  GWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSG  297

Query  298  VLVSVHAFASDPARGMFilallviviggslllYAVKGGSVRARVGNALWSRESFLLGNNI  357
            VLVSVHAFASDPARGMFILA++V+V GGSLLL+AV+G  VR+RV NALWSRES+LLGNN+
Sbjct  298  VLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNV  357

Query  358  LLITAMlvvllgtllplvHKALGLGSISIGAPFFNVLFSALMVPFALLLGVGPLVRWRRD  417
            LL++AMLVVLLGTLLPLVHK LGLGSIS+G PFFN +F+ LMVPFALLLGVGPLVRW RD
Sbjct  358  LLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRD  417

Query  418  EPQKlrrrllvalvvtlaaslmlPWLLQDSINAMTVAGLMMAVWVLALTLMELLERATHR  477
             P+++R+ L  A+V TL  S++LPWLL+D I AMT  G+ MA W+  L++ E ++R +  
Sbjct  418  RPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS--  475

Query  478  HSLWRGLGKLSRSQWGMTLGHVGLAVTVIGIAFSQNYSVERDVRMTAGDSVDIHHYRFVF  537
                RG  K S S WGM  +H+GLAVT+ GIAFSQNYSVERDVRM AGDSV IH+YRF F
Sbjct  476  ----RG-TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTF  530

Query  538  REARDAQGPNWRGAVGIIDVLRDGKPEATLRAEKRAYNSNRVVMTEAAIDGGLTRDLYAA  597
            RE RD  GPN RG+V++I+V R+G PEA L+AEKR YN++R+VMTEAAIDGGLTRDLYAA
Sbjct  531  REVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAA  590

Query  598  LGEELDDGSWAVRLYYKPFVRWIWYggllmafggllcllDPRYRLKK  644
            LGEELD+G+WAVRLYYKPFVRWIW GGLLMA+GGLLCL DPRYR +K
Sbjct  591  LGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

201) ccmF in NC_020211


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  606 bits (2290),  Expect = 1e-174, Method: Compositional matrix adjust.
 Identities = 475/650 (74%), Positives = 564/650 (87%), Gaps = 7/650 (1%)

Query  1    MMPELGSFllclalaialllSIYPQWGAARQDSRMMAVARPLTYGMFAAIALAFLCLVHA  60
            MMPE G  LLCLAL++ALLLS+YP WG AR D+RMMA A  ++  +F  +A AF+ LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVATNSNTQLPVYYRIAATWGAHEGslllwvlllscwslavalcsRAMPQD  120
            FVVNDFTVAYVA NSNTQLPV YR+AATWGAHEGSLLLWVLL+S W+LAVA+ SR +P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLSVMGMITAGFLLFIIMTSNPFTRTLPNFPIDGSDLNPLLQDIGLIFHPPLLYMG  180
             VARVL+VMGM+ AGFL FI+ TS PF+RTLP FP++G DLNPLLQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMAGRLDTAWARWSRPWTTAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLD+A +R +RPWT AAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAITAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTAL+HS+AVTE+R+ FKAWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPARGMFILAYLVIVIGGSLLLYAVKGGQVRSRVQHETFSRETFLLGNNvlli  360
            SVH+FASDPARGMFILA++V+V GGSLLL+AV+G +VRSRV++   SRE++LLGNNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGSISIGEPFFNTMFTWlmaplalllgigplVRWRRDEPG  420
            AAMLVVLLGTLLPLVHKQLGLGSIS+GEPFFNTMFTWLM P+ALLLG+GPLVRW RD P 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLWRRLGvallatlvlsillPWLLQDSIAGMTVVGLIMALWVIILTLMELHERATHRHGF  480
            ++++ L  A+++TLVLS+LLPWLL+D I +MT VG+ MA W+ +L++ E  +R +     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  481  WRGLRQLSRSHWGMVLGHLGVAVTVIGIAFSQNYSVERDVRMKAGDSVDIHNYHFVFRDV  540
             RG +  S S WGMV +HLG+AVT+ GIAFSQNYSVERDVRM+AGDSV IH+Y+F FR+V
Sbjct  476  -RGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  HDIRGPNYSGGVGIIDVTRNGKPEATLHAEKRYYSVARSMMTEAAIDGGFSRDLYAALGE  600
            +DI GPNY GGV++I+VTR+G PEA LHAEKR Y+ +R +MTEAAIDGG++RDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELEDGSWAVRLYYKPFVRWIWFGGVFMAIGGLLCILDPRYRMSKKLKREG  650
            EL++G+WAVRLYYKPFVRWIW GG++MA+GGLLC+ DPRYR  K L   G
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

202) A79E_2179 in NC_018522


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  603 bits (2279),  Expect = 1e-173, Method: Compositional matrix adjust.
 Identities = 470/651 (73%), Positives = 566/651 (87%), Gaps = 9/651 (1%)

Query  1    MMPELGNFllclaaglalllSVYPLWGAARQDRRLMALARPLAWGLFACIGGAFLLLVHA  60
            MMPE G+ LLCLA G+ALLLSVYPLWG AR D R+MA A  +AW LF C++GAF++LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVRYVAENSNSALPVWYRVAATWGAHEGslllwvlllsvwTFAVAIFSRRMPLD  120
            FVVNDFTV YVA NSN+ LPVWYRVAATWGAHEGSLLLWVLL+S WT+AVA+FSR++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLAVMGMIAFGFLLFILFTSNPFSRGLPQYPIDGRDLNPLLQDIGMIFHPPILYMG  180
             VARVLAVMGM+  GFL FILFTS PF+R LP +P++GRDLNPLLQD G+IFHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLAGRLDTAWARWSRPWTQAAWMFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LL+GRLD+A +R +RPWT AAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALLHSLAVTEKRGSFRAWTVLLAIAAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTALLHS+AVTE+R++F+AWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPSRGLFILVLLIVAIGGSLLLYALKGGRVRARVEHTLWSRETFLLGNNIllm  360
            SVHAFASDP+RG+FIL ++++  GGSLLL+A++G RVR+RV+++LWSRE++LLGNN+LLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKELGLGSISIGEPFFNTMFTalmapfalllglgplIRWRRDDVA  420
            AAMLVVLLGTLLPLVHK+LGLGSIS+GEPFFNTMFT LM PFALLLG+GPL+RW RD  +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR-P  419

Query  421  RQIKRli-iallvtlslslalpwllQDRITAMAVIGLMMALWVLIFALMEVHERATHRHG  479
            R+I++L+  A++ TL LS+ LPWLL+D+I AM+ +G+ MA W+ ++A+ E  +R +    
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS----  475

Query  480  FWRGLRTLTRSQWGMVLGHVGVAVTVIGITFSQNYSVERDVRMRPGDSIDIHRYHFVFNG  539
              RG +T + S WGMV +H+G+AVT+ GI+FSQNYSVERDVRMR+GDS+ IH Y+F F  
Sbjct  476  --RGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  540  VRNIVGPNWTGGEGIIAVTRNGRPEATLYAEKRFYTASRMMMTEAAISGGLTRDLYAALG  599
            VR+I GPN  GG ++I+VTR+G PEA L AEKR+Y +SRM+MTEAAI GGLTRDLYAALG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  600  EELSDGSWAVRLYYKPFVRWIWYGGVLMALGGLCCMLDPRYRMRKKLQEAS  650
            EEL +G+WAVRLYYKPFVRWIW GG+LMALGGL C+ DPRYR RK L EA+
Sbjct  593  EELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

203) ccmF in NC_012731


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  603 bits (2279),  Expect = 1e-173, Method: Compositional matrix adjust.
 Identities = 470/651 (73%), Positives = 566/651 (87%), Gaps = 9/651 (1%)

Query  1    MMPELGNFllclaaglalllSVYPLWGAARQDRRLMALARPLAWGLFACIGGAFLLLVHA  60
            MMPE G+ LLCLA G+ALLLSVYPLWG AR D R+MA A  +AW LF C++GAF++LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVRYVAENSNSALPVWYRVAATWGAHEGslllwvlllsvwTFAVAIFSRRMPLD  120
            FVVNDFTV YVA NSN+ LPVWYRVAATWGAHEGSLLLWVLL+S WT+AVA+FSR++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLAVMGMIAFGFLLFILFTSNPFSRGLPQYPIDGRDLNPLLQDIGMIFHPPILYMG  180
             VARVLAVMGM+  GFL FILFTS PF+R LP +P++GRDLNPLLQD G+IFHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLAGRLDTAWARWSRPWTQAAWMFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LL+GRLD+A +R +RPWT AAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALLHSLAVTEKRGSFRAWTVLLAIAAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTALLHS+AVTE+R++F+AWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPSRGLFILVLLIVAIGGSLLLYALKGGRVRARVEHTLWSRETFLLGNNIllm  360
            SVHAFASDP+RG+FIL ++++  GGSLLL+A++G RVR+RV+++LWSRE++LLGNN+LLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKELGLGSISIGEPFFNTMFTalmapfalllglgplIRWRRDDVA  420
            AAMLVVLLGTLLPLVHK+LGLGSIS+GEPFFNTMFT LM PFALLLG+GPL+RW RD  +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR-P  419

Query  421  RQIKRli-iallvtlslslalpwllQDRITAMAVIGLMMALWVLIFALMEVHERATHRHG  479
            R+I++L+  A++ TL LS+ LPWLL+D+I AM+ +G+ MA W+ ++A+ E  +R +    
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS----  475

Query  480  FWRGLRTLTRSQWGMVLGHVGVAVTVIGITFSQNYSVERDVRMRPGDSIDIHRYHFVFNG  539
              RG +T + S WGMV +H+G+AVT+ GI+FSQNYSVERDVRMR+GDS+ IH Y+F F  
Sbjct  476  --RGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  540  VRNIVGPNWTGGEGIIAVTRNGRPEATLYAEKRFYTASRMMMTEAAISGGLTRDLYAALG  599
            VR+I GPN  GG ++I+VTR+G PEA L AEKR+Y +SRM+MTEAAI GGLTRDLYAALG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  600  EELSDGSWAVRLYYKPFVRWIWYGGVLMALGGLCCMLDPRYRMRKKLQEAS  650
            EEL +G+WAVRLYYKPFVRWIW GG+LMALGGL C+ DPRYR RK L EA+
Sbjct  593  EELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

204) Rahaq2_1273 in NC_016818


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  598 bits (2259),  Expect = 4e-172, Method: Compositional matrix adjust.
 Identities = 473/650 (73%), Positives = 561/650 (87%), Gaps = 7/650 (1%)

Query  1    MMPELGTFalclalglavllSIYPQWGAARQDSRMMAMARPLSYGMFACIALAFIILVHA  60
            MMPE G   LCLALG+A+LLS+YP WG AR D+RMMA A  ++  +F C+A AF++LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVAYVANNSNTRLPVYYRVAATWGAHEGslllwvlllscwtlAVALFSRRMPQD  120
            FVVNDFTVAYVA NSNT+LPV YRVAATWGAHEGSLLLWVLL+S WTLAVA+FSR++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLAVMGMITGGFLLFILLTSNPFIRSLPNFPVDGSDLNPVLQDIGLIFHPPLLYMG  180
             VARVLAVMGM+ +GFL FIL+TS PF R+LP FPV+G DLNP+LQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMAGRLDTAWARWSRPWTQAAWVFLTIGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLD+A +R +RPWT AAWVFLT+GIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALIHSLAVTEKRGTFKAWTVLLAITAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTAL+HS+AVTE+R+ FKAWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPARGMFILAYLVIVIGGSLLLYAFKGNSVRAPGRHELHSRESYllgnnvllv  360
            SVH+FASDPARGMFILA++V+V GGSLLL+A +G+ VR+   + L SRES LLGNNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplIHKQLGLGSISIGEPFFNTMFTWlmaplalllgigplVRWRRDEPS  420
            AAMLVVLLGTLLPL+HKQLGLGSIS+GEPFFNTMFTWLM P+ALLLG+GPLVRW RD P 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLWRRLGvallvtlvlsillpwllQDKIVGMTVVGLLMSVWVIVLTLMELHERATHRHSF  480
            ++++ L  A++ TLVLS+LLPWLL+DKI++MT VG+ M+ W+ VL++ E  +R +     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  481  WRGLTKLSRSHWGMVLGHLGVAVTVIGIAFSQNYSVERDVRMKSGDTVDIHDYHFIFRDV  540
             RG TK S S WGMV +HLG+AVT+ GIAFSQNYSVERDVRM++GD+V IHDY+F FR+V
Sbjct  476  -RG-TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  RDITGPNYTGGEANIDVTQNGKQVTTLHAEKRFYSVARSMMTEAAIDGNLARDLYAALGE  600
            RDITGPNY GG A I+VT++G   + LHAEKR+Y+ +R +MTEAAIDG L+RDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  EMDDGSWAVRLYYKPFVRWIWLGGLFMAAGGVLCILDPRYRMSKKLKKQG  650
            E+D+G+WAVRLYYKPFVRWIW GGL+MA GG+LC+ DPRYR  K L   G
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

205) Kvar_2199 in NC_013850


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  598 bits (2257),  Expect = 6e-172, Method: Compositional matrix adjust.
 Identities = 471/651 (73%), Positives = 566/651 (87%), Gaps = 9/651 (1%)

Query  1    MMPELGNFllclaaglalllSVYPLWGAARQDRRLMALARPLACGLFACIGGAFLLLVHA  60
            MMPE G+ LLCLA G+ALLLSVYPLWG AR D R+MA A  +A  LF C++GAF++LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVRYVAENSNSALPVWYRVAATWGAHEGslllwvlllsvwTFAVAIFSRRMPLD  120
            FVVNDFTV YVA NSN+ LPVWYRVAATWGAHEGSLLLWVLL+S WT+AVA+FSR++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLAVMGMIAFGFLLFILFTSNPFSRGLPQYPIDGRDLNPLLQDIGMIFHPPILYMG  180
             VARVLAVMGM+  GFL FILFTS PF+R LP +P++GRDLNPLLQD G+IFHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLAGRLDTAWARWSRPWTQAAWMFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LL+GRLD+A +R +RPWT AAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALLHSLAVTEKRGSFRAWTVLLAIAAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTALLHS+AVTE+R++F+AWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPSRGLFILVLLIVAIGGSLLLYALKGGRVRARVEHTLWSRESFLLGNNIllm  360
            SVHAFASDP+RG+FIL ++++  GGSLLL+A++G RVR+RV+++LWSRES+LLGNN+LLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKELGLGSISIGEPFFNTMFTalmapfalllglgplIRWRRDDVA  420
            AAMLVVLLGTLLPLVHK+LGLGSIS+GEPFFNTMFT LM PFALLLG+GPL+RW RD  +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR-P  419

Query  421  RQIKRli-ialvvtlslslalpwllQDRITAMAVIGLMMALWVLIFALMEVHERATHRHG  479
            R+I++L+  A+V TL LS+ LPWLL+D+I AM+ +G+ MA W+ ++A+ E  +R +    
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS----  475

Query  480  FWRGLRTLTRSQWGMVLGHVGVAVTVIGITFSQNYSVERDVRMRPGDSIDIHHYHFVFNG  539
              RG +T + S WGMV +H+G+AVT+ GI+FSQNYSVERDVRMR+GDS+ IH+Y+F F  
Sbjct  476  --RGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  540  VRNIVGPNWTGGEGIIAVTRNGRPEATLYAEKRFYTASRMMMTEAAISGGLTRDLYAALG  599
            VR+I GPN  GG ++I+VTR+G PEA L AEKR+Y +SRM+MTEAAI GGLTRDLYAALG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  600  EELSDGSWAVRLYYKPFVRWIWYGGVLMALGGLCCMLDPRYRMRKKLQEAS  650
            EEL +G+WAVRLYYKPFVRWIW GG+LMALGGL C+ DPRYR RK L EA+
Sbjct  593  EELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

206) ETAC_11630 in NC_020796


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  596 bits (2252),  Expect = 1e-171, Method: Compositional matrix adjust.
 Identities = 451/619 (73%), Positives = 538/619 (87%), Gaps = 7/619 (1%)

Query  23   YPCWGAARGDLRMMALARPLAFGLFATITLAFICLVYAFITNDFSVAYVAANSNSQLPVY  82
            YP WG ARGD RMMA A  +A  LF  ++ AF+ LV AF+ NDF+VAYVA+NSN+QLPV 
Sbjct  23   YPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVW  82

Query  83   FRIAATWGSHEGSlllwvmllswwtlAVSLLSRRMPLDSVARVLSVMGMINIGFLLFILL  142
            +R+AATWG+HEGSLLLWV+L+S WTLAV+++SR++P D VARVL+VMGM+  GFL FIL+
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  143  TSNPFIRTLPGFPIDGRDLNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDT  202
            TS PF RTLP+FP++GRDLNPLLQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLD+
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  203  AWARWSRPWTMAAWVFLTLGIVLGSFWAYYELGWGGWWFWDPVENASLMPWLTGTALLHS  262
            A +R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWWFWDPVENAS+MPWL+GTALLHS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  263  LAVTEKRGTFKAWTVLLAITSFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAYLVVV  322
            +AVTE+R+ FKAWT+LL+I +FSLCLLGTFLVRSGVLVSVHAFASDPARGMFILA++V+V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  323  IGGSLLLYALRGGQVRSHTRHELFSRETlllgnnvllvaatlvvllgtllplvHKQLGLG  382
             GGSLLL+A+RG +VRS+  + L SRE+LLLGNNVLL+AA LVVLLGTLLPLVHKQLGLG
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  383  SISIGEPFFNTMFTYLMVPFALLLGVGPLVRWRRDTLGRLRTPllaalvisaalalllpw  442
            SIS+GEPFFNTMFT LMVPFALLLGVGPLVRW RD    +R  L AA+V +  L++LLPW
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  443  llQDRIVAMTVLGLLMALWVVVLTLVELYQRATHRDGFWRGLGKLSRSQWGMVLAHLGVA  502
            LL+D+I+AMT +G+ MA W+ VL++ E  QR +      RG  K S S WGMV AHLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG-TKTSLSYWGMVAAHLGLA  495

Query  503  VTVIGIAFSQNYSIERDVRMKSGDSLEIRDYRFVFRDVHEISGPNYSGGEALIDVLRNGR  562
            VT+ GIAFSQNYS+ERDVRM++GDS+ I+DYRF FR+V++I+GPNY GG ALI+V R+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  PETTLRAEKRFYTNARSMMTEAAVDGGLTRDLYAALGEELDDGAWAVRLYYKPFVRWIWY  622
            PE+ L+AEKR+Y  +R +MTEAA+DGGLTRDLYAALGEELD+GAWAVRLYYKPFVRWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGVLMSLGGLLCMLDPRYR  641
            GG+LM+LGGLLC+ DPRYR
Sbjct  616  GGLLMALGGLLCLADPRYR  634

207) ccmF in NC_011283


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  596 bits (2252),  Expect = 1e-171, Method: Compositional matrix adjust.
 Identities = 470/651 (73%), Positives = 566/651 (87%), Gaps = 9/651 (1%)

Query  1    MMPELGNFllclaaglalllSVYPLWGAARQDRRLMALARPLACGLFACIGGAFLLLVHA  60
            MMPE G+ LLCLA G+ALLLSVYPLWG AR D R+MA A  +A  LF C++GAF++LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVRYVAENSNSALPVWYRVAATWGAHEGslllwvlllsvwTFAVAIFSRRMPLD  120
            FVVNDFTV YVA NSN+ LPVWYRVAATWGAHEGSLLLWVLL+S WT+AVA+FSR++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLAVMGMIAFGFLLFILFTSNPFSRGLPQYPIDGRDLNPLLQDIGMIFHPPILYMG  180
             VARVLAVMGM+  GFL FILFTS PF+R LP +P++GRDLNPLLQD G+IFHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLAGRLDTAWARWSRPWTQAAWMFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LL+GRLD+A +R +RPWT AAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALLHSLAVTEKRGSFRAWTVLLAIAAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTALLHS+AVTE+R++F+AWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPSRGLFILVLLIVAIGGSLLLYALKGGRVRARVEHTLWSRESFLLGNNIllm  360
            SVHAFASDP+RG+FIL ++++  GGSLLL+A++G RVR+RV+++LWSRES+LLGNN+LLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKELGLGSISIGEPFFNTMFTalmapfalllglgplIRWRRDDVA  420
            AAMLVVLLGTLLPLVHK+LGLGSIS+GEPFFNTMFT LM PFALLLG+GPL+RW RD  +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR-P  419

Query  421  RQIKRli-ialvvtlslslalpwllQDRITAMAVIGLMMALWVLIFALMEVHERATHRHG  479
            R+I++L+  A+V TL LS+ LPWLL+D+I AM+ +G+ MA W+ ++A+ E  +R +    
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS----  475

Query  480  FWRGLRTLTRSQWGMVLGHVGVAVTVIGITFSQNYSVERDVRMRPGDSIDIHHYHFVFNG  539
              RG +T + S WGMV +H+G+AVT+ GI+FSQNYSVERDVRMR+GDS+ IH+Y+F F  
Sbjct  476  --RGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  540  VRNIVGPNWTGGEGIIAVTRNDRPEATLYAEKRFYTASRMMMTEAAISGGLTRDLYAALG  599
            VR+I GPN  GG ++I+VTR++ PEA L AEKR+Y +SRM+MTEAAI GGLTRDLYAALG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  600  EELSDGSWAVRLYYKPFVRWIWYGGVLMALGGLCCMLDPRYRMRKKLQEAS  650
            EEL +G+WAVRLYYKPFVRWIW GG+LMALGGL C+ DPRYR RK L EA+
Sbjct  593  EELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

208) D782_2829 in NC_020063


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  596 bits (2251),  Expect = 2e-171, Method: Compositional matrix adjust.
 Identities = 436/585 (75%), Positives = 516/585 (89%), Gaps = 7/585 (1%)

Query  64   NDFTVRYVADNSNVALPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVALGSRRMPLDAVA  123
            NDFTV YVA+NSN  LPVWYRVAATWGAHEGSLLLWVLLMSGWT+AVA+ SR++P D VA
Sbjct  64   NDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVA  123

Query  124  RVLAVMGMISAGFLLFILFTSNPFTRGLPEYPIDGRDLNPLLQDIGMIFHPPLLYMGYVG  183
            RVLAVMGM+ AGFL FILFTS PF+R LP +P++GRDLNPLLQD G+IFHPPLLYMGYVG
Sbjct  124  RVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVG  183

Query  184  FSVAFAFAIASLLAGRLDTAWARWSRPWTQAAWVFLTMGIVLGSAWAYYELGWGGWWFWD  243
            FSVAFAFAIA+LL+GRLD+A +R +RPWT AAWVFLT+GIVLGSAWAYYELGWGGWWFWD
Sbjct  184  FSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWD  243

Query  244  PVENASFMPWLVGTALMHSLAVTEKRGSFRAWTVLLAISAFSLCLLGTFLVRSGVLVSVH  303
            PVENASFMPWL GTAL+HS+AVTE+R++F+AWT+LL+I AFSLCLLGTFLVRSGVLVSVH
Sbjct  244  PVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVH  303

Query  304  AFASDPARGMFilallvlviggslllYALKGGSVRARVEHTLWSRESFLLGNNilliaam  363
            AFASDPARGMFILA++VLV GGSLLL+A++G  VR+RV+++LWSRES+LLGNN+LL+AAM
Sbjct  304  AFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAM  363

Query  364  lvvllgtllplvHKELGLGSISIGEPFFNSLFTVLMAPFALLLGIGPLVRWRRDDAKKQI  423
            LVVLLGTLLPLVHK+LGLGSIS+GEPFFN++FT LM PFALLLG+GPLVRW RD +++  
Sbjct  364  LVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIR  423

Query  424  KRlvisllltlvlsivlPWWLQDRIAAMTVIGLMMALWVFIFVLIELHERATHRHGFWRG  483
            K L  +++ TLVLS++LPW L+D+I AMT +G+ MA W+ ++ + E  +R +      RG
Sbjct  424  KLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG  477

Query  484  LTKLSRSQWGMVLAHIGVAVTVTGIAFSQSYSVERDVRMKAGDSIDIHQYHFVFKGVRDI  543
             TK S S WGMV AH+G+AVT+TGIAFSQ+YSVERDVRM+AGDS+ IH+Y+F F+ VRDI
Sbjct  478  -TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDI  536

Query  544  VGPNWFGGEGVIEVTRHGRPEATLYAEKRFYSASRMMMTEAAIDGGLTRDLYAALGEELD  603
             GPN  GG ++I VTRHG PEA L AEKR+Y++SRM+MTEAAIDGGLTRDLYAALGEELD
Sbjct  537  TGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELD  596

Query  604  DGSWAVRLYYKPFVRWIWYGGVLMALGGLCCMLDPRYRMRKSRQE  648
            +G+WAVRLYYKPFVRWIW GG+LMALGGL C+ DPRYR RK+  E
Sbjct  597  NGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPE  641

209) ccmF1 in NC_013508


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  596 bits (2251),  Expect = 2e-171, Method: Compositional matrix adjust.
 Identities = 451/619 (73%), Positives = 538/619 (87%), Gaps = 7/619 (1%)

Query  23   YPCWGAARGDLRMMALARPLAFGLFATITLAFICLVYAFIANDFSVAYVAANSNSQLPVY  82
            YP WG ARGD RMMA A  +A  LF  ++ AF+ LV AF+ NDF+VAYVA+NSN+QLPV 
Sbjct  23   YPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVW  82

Query  83   FRIAATWGSHEGSlllwvmllswwtlAVSLLSRRMPLDSVARVLSVMGMINIGFLLFILL  142
            +R+AATWG+HEGSLLLWV+L+S WTLAV+++SR++P D VARVL+VMGM+  GFL FIL+
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  143  TSNPFIRTLPGFPIDGRDLNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDT  202
            TS PF RTLP+FP++GRDLNPLLQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLD+
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  203  AWARWSRPWTMAAWVFLTLGIVLGSFWAYYELGWGGWWFWDPVENASLMPWLTGTALLHS  262
            A +R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWWFWDPVENAS+MPWL+GTALLHS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  263  LAVTEKRGTFKAWTVLLAITSFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAYLVVV  322
            +AVTE+R+ FKAWT+LL+I +FSLCLLGTFLVRSGVLVSVHAFASDPARGMFILA++V+V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  323  IGGSLLLYALRGGQVRSHTRHELFSRETlllgnnvllvaatlvvllgtllplvHKQLGLG  382
             GGSLLL+A+RG +VRS+  + L SRE+LLLGNNVLL+AA LVVLLGTLLPLVHKQLGLG
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  383  SISIGEPFFNTMFTYLMVPFALLLGVGPLVRWRRDTLGRLRTPllaalvisaalalllpw  442
            SIS+GEPFFNTMFT LMVPFALLLGVGPLVRW RD    +R  L AA+V +  L++LLPW
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  443  llQDRIVAMTVLGLLMALWVVVLTLVELYQRATHRDGFWRGLGKLSRSQWGMVLAHLGVA  502
            LL+D+I+AMT +G+ MA W+ VL++ E  QR +      RG  K S S WGMV AHLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG-TKTSLSYWGMVAAHLGLA  495

Query  503  VTVIGIAFSQNYSIERDVRMKSGDSLEIRDYRFVFRDVHEISGPNYSGGEALIDVLRNGR  562
            VT+ GIAFSQNYS+ERDVRM++GDS+ I+DYRF FR+V++I+GPNY GG ALI+V R+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  PETTLRAEKRFYTNARSMMTEAAVDGGLTRDLYAALGEELDDGAWAVRLYYKPFVRWIWY  622
            PE+ L+AEKR+Y  +R +MTEAA+DGGLTRDLYAALGEELD+GAWAVRLYYKPFVRWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGVLMSLGGLLCMLDPRYR  641
            GG+LM+LGGLLC+ DPRYR
Sbjct  616  GGLLMALGGLLCLADPRYR  634

210) ccmF in NC_017309


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  596 bits (2251),  Expect = 2e-171, Method: Compositional matrix adjust.
 Identities = 451/619 (73%), Positives = 538/619 (87%), Gaps = 7/619 (1%)

Query  23   YPCWGAARGDLRMMALARPLAFGLFATITLAFICLVYAFIANDFSVAYVAANSNSQLPVY  82
            YP WG ARGD RMMA A  +A  LF  ++ AF+ LV AF+ NDF+VAYVA+NSN+QLPV 
Sbjct  23   YPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVW  82

Query  83   FRIAATWGSHEGSlllwvmllswwtlAVSLLSRRMPLDSVARVLSVMGMINIGFLLFILL  142
            +R+AATWG+HEGSLLLWV+L+S WTLAV+++SR++P D VARVL+VMGM+  GFL FIL+
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  143  TSNPFIRTLPGFPIDGRDLNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDT  202
            TS PF RTLP+FP++GRDLNPLLQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLD+
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  203  AWARWSRPWTMAAWVFLTLGIVLGSFWAYYELGWGGWWFWDPVENASLMPWLTGTALLHS  262
            A +R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWWFWDPVENAS+MPWL+GTALLHS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  263  LAVTEKRGTFKAWTVLLAITSFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAYLVVV  322
            +AVTE+R+ FKAWT+LL+I +FSLCLLGTFLVRSGVLVSVHAFASDPARGMFILA++V+V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  323  IGGSLLLYALRGGQVRSHTRHELFSRETlllgnnvllvaatlvvllgtllplvHKQLGLG  382
             GGSLLL+A+RG +VRS+  + L SRE+LLLGNNVLL+AA LVVLLGTLLPLVHKQLGLG
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  383  SISIGEPFFNTMFTYLMVPFALLLGVGPLVRWRRDTLGRLRTPllaalvisaalalllpw  442
            SIS+GEPFFNTMFT LMVPFALLLGVGPLVRW RD    +R  L AA+V +  L++LLPW
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  443  llQDRIVAMTVLGLLMALWVVVLTLVELYQRATHRDGFWRGLGKLSRSQWGMVLAHLGVA  502
            LL+D+I+AMT +G+ MA W+ VL++ E  QR +      RG  K S S WGMV AHLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG-TKTSLSYWGMVAAHLGLA  495

Query  503  VTVIGIAFSQNYSIERDVRMKSGDSLEIRDYRFVFRDVHEISGPNYSGGEALIDVLRNGR  562
            VT+ GIAFSQNYS+ERDVRM++GDS+ I+DYRF FR+V++I+GPNY GG ALI+V R+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  PETTLRAEKRFYTNARSMMTEAAVDGGLTRDLYAALGEELDDGAWAVRLYYKPFVRWIWY  622
            PE+ L+AEKR+Y  +R +MTEAA+DGGLTRDLYAALGEELD+GAWAVRLYYKPFVRWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGVLMSLGGLLCMLDPRYR  641
            GG+LM+LGGLLC+ DPRYR
Sbjct  616  GGLLMALGGLLCLADPRYR  634

211) KPN2242_13330 in NC_017540


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  596 bits (2250),  Expect = 2e-171, Method: Compositional matrix adjust.
 Identities = 471/651 (73%), Positives = 564/651 (87%), Gaps = 9/651 (1%)

Query  1    MMPELGNFllclaaglalllSVYPLWGAARQDRRLMALARPLACGLFACIGGAFLLLVHA  60
            MMPE G+ LLCLA G+ALLLSVYPLWG AR D R+MA A  +A  LF C++GAF++LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVRYVAENSNSALPVWYRVAATWGAHEGslllwvlllsvwTFAVAIFSRRMPLD  120
            FVVNDFTV YVA NSN+ LPVWYRVAATWGAHEGSLLLWVLL+S WT+AVA+FSR++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLAVMGMIAFGFLLFILFTSNPFSRGLPQYPIDGRDLNPLLQDIGMIFHPPTLYMG  180
             VARVLAVMGM+  GFL FILFTS PF+R LP +P++GRDLNPLLQD G+IFHPP LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLAGRLDTAWARWSRPWTQAAWMFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LL+GRLD+A +R +RPWT AAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALLHSLAVTEKRGSFRAWTVLLAIAAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTALLHS+AVTE+R++F+AWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPSRGLFILVLLIVAIGGSLLLYALKGGRVRARVEHTLWSRESLLLGNNIllm  360
            SVHAFASDP+RG+FIL ++++  GGSLLL+A++G RVR+RV+++LWSRESLLLGNN+LLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKELGLGSISIGEPFFNTMFTalmapfalllglgplIRWRRDDVA  420
            AAMLVVLLGTLLPLVHK+LGLGSIS+GEPFFNTMFT LM PFALLLG+GPL+RW RD  +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR-P  419

Query  421  RQIKRli-iallvtlslslalpwllQDRITAMAVIGLMMALWVLIFALMEVHERATHRHG  479
            R+I++L+  A++ TL LS+ LPWLL+D+I AM+ +G+ MA W+ ++A+ E  +R +    
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS----  475

Query  480  FWRGLRTLTRSQWGMVLGHVGVAVTVIGITFSQNYSVERDVRMRPGDSIDIHLYHFVFNG  539
              RG +T + S WGMV +H+G+AVT+ GI+FSQNYSVERDVRMR+GDS+ IH Y+F F  
Sbjct  476  --RGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  540  VRNIVGPNWTGGEGIIAVTRNGRPEATLYAEKRFYTASRMMMTEAAISGGLTRDLYAALG  599
            VR+I GPN  GG ++I+VTR+G PEA L AEKR+Y +SRM+MTEAAI GGLTRDLYAALG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  600  EELSDGSWAVRLYYKPFVRWIWYGGVLMALGGLCCMLDPRYRMRKKLQEAS  650
            EEL +G+WAVRLYYKPFVRWIW GG+LMALGGL C+ DPRYR RK L EA+
Sbjct  593  EELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

212) NT01EI_2764 in NC_012779


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  596 bits (2251),  Expect = 2e-171, Method: Compositional matrix adjust.
 Identities = 448/627 (72%), Positives = 539/627 (86%), Gaps = 7/627 (1%)

Query  23   YPCWGAARGDRRMMALARPLAFGLFATITLSFICLVYAFIANDFSVAYVAANSNSQLPVY  82
            YP WG ARGD RMMA A  +A  LF  ++ +F+ LV AF+ NDF+VAYVA+NSN+QLPV 
Sbjct  23   YPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVW  82

Query  83   FRIAATWGSHEGSlllwvmllswwtlAVSLLSRRMPLDSVARVLSVMGMINIGFLLFILL  142
            +R+AATWG+HEGSLLLWV+L+S WTLAV+++SR++P D VARVL+VMGM+  GFL FIL+
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  143  TSNPFIRTLPGFPIDGRDLNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDT  202
            TS PF RTLP+FP++GRDLNPLLQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLD+
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  203  AWARWSRPWTMAAWVFLTLGIVLGSFWAYYELGWGGWWFWDPVENASLMPWLTGTALLHS  262
            A +R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWWFWDPVENAS+MPWL+GTALLHS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  263  LAVTEKRGTFKAWTVLLAITSFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAYLVVV  322
            +AVTE+R+ FKAWT+LL+I +FSLCLLGTFLVRSGVLVSVHAFASDPARGMFILA++V+V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  323  IGGSLLLYALRGGQVRSHTRHELFSRETlllgnnvllvaatlvvllgtllplvHKQLGLG  382
             GGSLLL+A+RG +VRS+  + L SRE+LLLGNNVLL+AA LVVLLGTLLPLVHKQLGLG
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  383  SISIGEPFFNTMFTYLMVPFALLLGVGPLVRWRRDSLGRLRTPllaalvlsaalalllpw  442
            SIS+GEPFFNTMFT LMVPFALLLGVGPLVRW RD    +R  L AA+V +  L++LLPW
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  443  llQDSIVAMTVLGLLMALWVVVLTLVELYQRAAHRDGFWRGLGKLSRSQWGMVLAHLGVA  502
            LL+D I+AMT +G+ MA W+ VL++ E  QR +      RG  K S S WGMV AHLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG-TKTSLSYWGMVAAHLGLA  495

Query  503  VTVIGIAFSQNYSIERDVRMKSGDTLQIRDYRFVFRDVHEISGPNYSGGEALIDVLRNGR  562
            VT+ GIAFSQNYS+ERDVRM++GD++ I+DYRF FR+V++I+GPNY GG ALI+V R+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  PETTLRAEKRFYTNARSMMTEAAVDGGLTRDLYAALGEELDDGVWAVRLYYKPFVRWIWY  622
            PE+ L+AEKR+Y  +R +MTEAA+DGGLTRDLYAALGEELD+G WAVRLYYKPFVRWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGVLMSLGGMLCMLDPRYRSARRAKDA  649
            GG+LM+LGG+LC+ DPRYR  +   +A
Sbjct  616  GGLLMALGGLLCLADPRYRRRKPLPEA  642

213) ccmF in NC_014562


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  596 bits (2251),  Expect = 2e-171, Method: Compositional matrix adjust.
 Identities = 441/619 (72%), Positives = 534/619 (87%), Gaps = 7/619 (1%)

Query  26   WGAVRQDARLMAMARPlacglficiaaafallVWAFISNDFTVAYVVTNSNSLLPVYYRI  85
            WG  R DAR+MA A  +A  LFIC+A+AF +LV AF+ NDFTVAYV  NSN+ LPV YR+
Sbjct  26   WGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRV  85

Query  86   AATWGAHEGslllwvlllstwtlavaIFSRGMPQDALARVLAVMGMINLGFLLFILLTSN  145
            AATWGAHEGSLLLWVLL+S WTLAVA+FSR +P D +ARVLAVMGM+  GFL FIL+TS 
Sbjct  86   AATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSG  145

Query  146  PFGRTLPDFPIDGHDLNPMLQDIGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDTAWA  205
            PF+RTLP FP++G+DLNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLD+A +
Sbjct  146  PFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFT  205

Query  206  RWSRPWTTAAWVFLTIGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAV  265
            R +RPWT AAWVFLT+GIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS+AV
Sbjct  206  RFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAV  265

Query  266  TEKRGTFKAWTVLLAITAFSLSLLGTFLVRSGVLVSVHSFASDPARGMFILAFLVIVIGS  325
            TE+R+ FKAWT+LL+I AFSL LLGTFLVRSGVLVSVH+FASDPARGMFILAF+V+V G+
Sbjct  266  TEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGG  325

Query  326  SLLLYAIKGGQVRGRVQNETWSRESFLLGNNvlliaamlvvllgtllplvHKQLGLGSIS  385
            SLLL+A++G +VR+RV+N  WSRES+LLGNNVLL+AAMLVVLLGTLLPLVHKQLGLGSIS
Sbjct  326  SLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSIS  385

Query  386  VGEPFFNTMFSWLMAPFALLMGIGPLVRWRRDEPQKLAKRLALALMVTLACSMIIPWWLQ  445
            VGEPFFNTMF+WLM PFALL+G+GPLVRW RD P+++ K L  A++ TL  S+++PW L+
Sbjct  386  VGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLE  445

Query  446  DRIEAMTVVGLLMSLWIIVLTLLELHERATHRHPFFAGLRHLSRSHWGMVLGHLGVGVTV  505
            D+I AMT VG+ M+ WI VL++ E  +R ++           S S WGMV +HLG++VT+
Sbjct  446  DKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG-------TKTSLSYWGMVAAHLGLAVTI  498

Query  506  IGIAFSTQYSVERDVRMKAGDSVDIHHYHFVFRGVQNLQGPNYSGGMGIIDVTRNGRHEA  565
             GIAFS +YSVERDVRM+AGDSV IH+Y+F FR V+++ GPNY GG+++I+VTR+G  EA
Sbjct  499  TGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEA  558

Query  566  TLQAEKRFYTAARTMMTEAAIDGGFSRDLYAALGEELEDGGWAVRIYYKPFVRWIWFGGA  625
             L+AEKR+Y ++R +MTEAAIDGG++RDLYAALGEEL++G+WAVR+YYKPFVRWIW GG 
Sbjct  559  VLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGL  618

Query  626  LMAVGGLFCLFDPRYRSRK  644
            LMA+GGL+CL DPRYR RK
Sbjct  619  LMALGGLLCLADPRYRRRK  637

214) ccmF in NC_009648


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  595 bits (2248),  Expect = 3e-171, Method: Compositional matrix adjust.
 Identities = 469/651 (73%), Positives = 565/651 (87%), Gaps = 9/651 (1%)

Query  1    MMPELGNFllclaaglalllSVYPLWGAARQDRRLMALARPLACGLFACIGGAFLLLVHA  60
            MMPE G+ LLCLA G+ALLLSVYPLWG AR D R+MA A  +A  LF C++GAF++LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVRYVAENSNSALPVWYRVAATWGAHEGslllwvlllsvwTFAVAIFSRRMPLD  120
            FVVNDFTV YVA NSN+ LPVWYRVAATWGAHEGSLLLWVLL+S WT+AVA+FSR++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLAVMGMIAFGFLLFILFTSNPFSRGLPQYPIDGRDLNPLLQDIGMIFHPPILYMG  180
             VARVLAVMGM+  GFL FILFTS PF+R LP +P++GRDLNPLLQD G+IFHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLAGRLDTAWARWSRPWTQAAWMFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LL+GRLD+A +R +RPWT AAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALLHSLAVTEKRGSFRAWTVLLAIAAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTALLHS+AVTE+R++F+AWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPSRGLFILVLLIVAIGGSLLLYALKGGRVRARVEHTLWSRESFLLGNNIllm  360
            SVHAFASDP+RG+FIL ++++  GGSLLL+A++G RVR+RV+++LWSRES+LLGNN+LLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKELGLGSISIGEPFFNTMFTalmapfalllglgplIRWRRDDVA  420
            AAMLVVLLGTLLPLVHK+LGLGSIS+GEPFFNTMFT LM PFALLLG+GPL+RW RD  +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR-P  419

Query  421  RQIKRli-iallvtlslslalpwllQDRITAMAVIGLMMALWVLIFALMEVHERATHRHG  479
            R+I++L+  A++ TL LS+ LPWLL+D+I AM+ +G+ MA W+ ++A+ E  +R +    
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS----  475

Query  480  FWRGLRTLTRSQWGMVLGHVGVAVTVIGITFSQNYSVERDVRMRPGDSIDIHRYHFVFNG  539
              RG +T + S WGMV +H+G+AVT+ GI+FSQNYSVERDVRMR+GDS+ IH Y+F F  
Sbjct  476  --RGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  540  VRNIVGPNWTGGEGIIAVTRNGRPEATLYAEKRFYTASRMMMTEAAISDGLTRDLYAALG  599
            VR+I GPN  GG ++I+VTR+G PEA L AEKR+Y +SRM+MTEAAI +GLTRDLYAALG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  600  EELSDGSWAVRLYYKPFVRWIWYGGVLMALGGLCCMLDPRYRMRKKLQEAS  650
            EEL +G+WAVRLYYKPFVRWIW GG+LMALGGL C+ DPRYR RK L EA+
Sbjct  593  EELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

215) N559_2215 in NC_022082


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  595 bits (2246),  Expect = 4e-171, Method: Compositional matrix adjust.
 Identities = 468/651 (72%), Positives = 564/651 (87%), Gaps = 9/651 (1%)

Query  1    MMPELGNFllclaaglalllSVYPLWGAARQDRRLMALARPLACGLFACIGGAFLLLVHA  60
            MMPE G+ LLCLA G+ALLLSVYPLWG AR D R+MA A  +A  LF C++GAF++LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVRYVAENSNSALPVWYRVAATWGAHEGslllwvlllsvwTFAVAIFSRRMPLD  120
            FVVNDFTV YVA NSN+ LPVWYRVAATWGAHEGSLLLWVLL+S WT+AVA+FSR++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLAVMGMIAFGFLLFILFTSNPFSRGLPQYPIDGRDLNPLLQDIGMIFHPPILYMG  180
             VARVLAVMGM+  GFL FILFTS PF+R LP +P++GRDLNPLLQD G+IFHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLAGRLDTAWARWSRPWTQAAWMFLTLGIALGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LL+GRLD+A +R +RPWT AAW+FLTLGI LGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALLHSLAVTEKRGSFRAWTVLLAIAAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTALLHS+AVTE+R++F+AWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPSRGLFILVLLIVAIGGSLLLYALKGGRVRARVEHTLWSRESFLLGNNIllm  360
            SVHAFASDP+RG+FIL ++++  GGSLLL+A++G RVR+RV+++LWSRES+LLGNN+LLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKELGLGSISIGEPFFNTMFTalmapfalllglgplIRWRRDDVA  420
            AAMLVVLLGTLLPLVHK+LGLGSIS+GEPFFNTMFT LM PFALLLG+GPL+RW RD  +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR-P  419

Query  421  RQIKRli-iallvtlslslalpwllQDRITAMAVIGLMMALWVLIFALLEVHERATHRHG  479
            R+I++L+  A++ TL LS+ LPWLL+D+I AM+ +G+ MA W+ ++A+ E  +R +    
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS----  475

Query  480  FWRGLRALTRSQWGMVLGHVGVAVTVIGITFSQNYSVERDVRMRPGDSIDIHRYHFVFNG  539
              RG ++ + S WGMV +H+G+AVT+ GI+FSQNYSVERDVRMR+GDS+ IH Y+F F  
Sbjct  476  --RGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  540  VRNIVGPNWTGGEGIIAVTRNGRPEATLYAEKRFYTASRMMMTEAAISGGLTRDLYAALG  599
            VR+I GPN  GG ++I+VTR+G PEA L AEKR+Y +SRM+MTEAAI GGLTRDLYAALG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  600  EELSDGSWAVRLYYKPFVRWIWYGGVLMALGGLCCMLDPRYRMRKKLQEAS  650
            EEL +G+WAVRLYYKPFVRWIW GG+LMALGGL C+ DPRYR RK L EA+
Sbjct  593  EELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

216) KPHS_30550 in NC_016845


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  594 bits (2245),  Expect = 5e-171, Method: Compositional matrix adjust.
 Identities = 468/651 (72%), Positives = 565/651 (87%), Gaps = 9/651 (1%)

Query  1    MMPELGNFllclaaglalllSVYPLWGAARQDRRLMALARPLACGLFACIGGAFLLLVHA  60
            MMPE G+ LLCLA G+ALLLSVYPLWG AR D R+MA A  +A  LF C++GAF++LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVRYVAENSNSALPVWYRVAATWGAHEGslllwvlllsvwTFAVAIFSRRMSLD  120
            FVVNDFTV YVA NSN+ LPVWYRVAATWGAHEGSLLLWVLL+S WT+AVA+FSR+++ D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLAVMGMIAFGFLLFILFTSNPFSRGLPQYPIDGRDLNPLLQDIGMIFHPPILYMG  180
             VARVLAVMGM+  GFL FILFTS PF+R LP +P++GRDLNPLLQD G+IFHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLAGRLDTAWARWSRPWTQAAWMFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LL+GRLD+A +R +RPWT AAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALLHSLAVTEKRGSFRAWTVLLAIAAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTALLHS+AVTE+R++F+AWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPSRGLFILVLLIVAIGGSLLLYALKGGRVRARVEHTLWSRESFLLGNNIllm  360
            SVHAFASDP+RG+FIL ++++  GGSLLL+A++G RVR+RV+++LWSRES+LLGNN+LLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKELGLGSISIGEPFFNTMFTalmapfalllglgplIRWRRDDVA  420
            AAMLVVLLGTLLPLVHK+LGLGSIS+GEPFFNTMFT LM PFALLLG+GPL+RW RD  +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR-P  419

Query  421  RQIKRli-iallvtlslslalpwllQDRITAMAVIGLMMALWVLIFALLEVHERATHRHG  479
            R+I++L+  A++ TL LS+ LPWLL+D+I AM+ +G+ MA W+ ++A+ E  +R +    
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS----  475

Query  480  FWRGLRALTRSQWGMVLGHVGVAVTVIGITFSQNYSVERDVRMRPGDSIDIHRYHFVFNG  539
              RG ++ + S WGMV +H+G+AVT+ GI+FSQNYSVERDVRMR+GDS+ IH Y+F F  
Sbjct  476  --RGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  540  VRNIVGPNWTGGEGIIAVTRNGRPEATLYAEKRFYTASRMMMTEAAISGGLTRDLYAALG  599
            VR+I GPN  GG ++I+VTR+G PEA L AEKR+Y +SRM+MTEAAI GGLTRDLYAALG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  600  EELSDGSWAVRLYYKPFVRWIWYGGVLMALGGLCCMLDPRYRMRKKLQEAS  650
            EEL +G+WAVRLYYKPFVRWIW GG+LMALGGL C+ DPRYR RK L EA+
Sbjct  593  EELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

217) RORB6_04560 in NC_021066


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  591 bits (2234),  Expect = 4e-170, Method: Compositional matrix adjust.
 Identities = 470/649 (73%), Positives = 563/649 (87%), Gaps = 7/649 (1%)

Query  1    MMPELGHYllclatglalllgIYPQWGAARQDPRLMALARPLACALFFCVAGAFLVLVHA  60
            MMPE GH LLCLA G+ALLL++YP WG AR D+R+MA A  +A  LF+CVAGAF+VLVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFTVRYVADNSNSALPMWYRVAATWGAHEGslllwvlllsvwTFAVALFSRRMPQD  120
            FVVNDFTV YVA+NSN+ LP+WYRVAATWGAHEGSLLLWVLL+S WT+AVA+FSR++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLAVMGTIAFGFLLFILFTSNPFARTLPLYPVDGRDLNPLLQDIGMIFHPPILYMG  180
             VARVLAVMG +  GFL FILFTS PFARTLP +PV+GRDLNPLLQD G+IFHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLAGRLDTAWARWSRPWTQAAWVFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LL+GRLD+A +R +RPWT AAWVFLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALLHSLAVTEQRGSFRAWTVLLAIAAFSLCLLGTFLVRSGVLV  300
            FWDPVENASFMPWL GTALLHS+AVTEQR++F+AWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPTRGLFILALLVVAIGGSLLLYALKGGQVRARVEHALWSRESFLLGNNilli  360
            SVH+FASDP+RG+FILA++V+  GGSLLL+A++G +VR+RV++ALWSRES+LLGNN+LL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKELGLGSISIGEPFFNLLFTalmapfalllglgplIRWRRDQPG  420
            AAMLVVLLGTLLPLVHK+LGLGSIS+GEPFFN +FT LM PFALLLG+GPL+RW RD+P 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KQLKRlaiallvtlslslllpwllQDRIVAMAVLGLMMAIWVLLFALIEIHERATHRHGF  480
            +  K L  A++ TL LS+LLPWLL+D+I+AM+ +G+ MA W+ ++A+ E  +R +     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  481  WRGLRVISRSQWGMVLGHVGVAVTVIGITFSQNYSIERDVRMKTGDSIDIHRYHFVFDGV  540
             RG +  S S WGMV +H+G+AVT+ GI+FSQNYS+ERDVRM++GDS+ IH Y+F F  V
Sbjct  476  -RGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  RNIVGANWTGGEGVITVTRNGRPEATLYAEKRYYSASRMMMTEAAIGGGLTRDLYAALGE  600
            R+I G+N  GG ++I VTR+G PEA L AEKR Y++SRM+MTEAAI+GGLTRDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELDDGSWAVRLYYKPFVRWIWFggglmalgglccmlDPRYRMRKQRQEA  649
            ELD+G+WAVRLYYKPFVRWIW GG LMALGGL C+ DPRYR RK   EA
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEA  642

218) ccmF in NC_013971


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  576 bits (2177),  Expect = 1e-165, Method: Compositional matrix adjust.
 Identities = 469/649 (73%), Positives = 570/649 (88%), Gaps = 7/649 (1%)

Query  1    MIPEIGsfllclalalslllsaYPLWGAARQDLRLMGLARPLScalfaciaaaflilVHA  60
            M+PE G  LLCLAL+++LLLS YPLWG AR D R+M+ A  ++  LF C+A+AF++LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFSVAYVAANSNTLLPVYYRVAASWGAHEgslllwvlllsgwtlalallSRTMPLE  120
            FVVNDF+VAYVA+NSNT LPV YRVAA+WGAHEGSLLLWVLL+SGWTLA+A++SR +P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AIARVLAVMGMINLGFLLFITLTSNPFSRTLPDFPIEGSDLNPMLQDIGLIFHPPLLYMG  180
             +ARVLAVMGM+  GFL FI +TS PF+RTLP FP+EG DLNP+LQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMTGRLDTAWSRWSRPWTTAAWVFLTIGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLD+A +R +RPWT AAWVFLT+GIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALIHSLAVTEKRGTFKAWTVLLAITAFSLSLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTAL+HS+AVTE+R+ FKAWT+LL+I AFSL LLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFLIIVIGGSLLLYAINGGKVRSRVQNEVWSRESFLLGNNvlli  360
            SVHAFASDPARGMFILAF+++V GGSLLL+A+ G +VRSRV+N +WSRES+LLGNNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGTISIGEPFFNTLFSWlmaplalllgigplVRWRRDEPQ  420
            AAMLVVLLGTLLPLVHKQLGLG+IS+GEPFFNT+F+WLM P+ALLLG+GPLVRW RD P+
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLWKRlalalvatlllsillPWLMQDRIEAMTVVGLLMALWVIILTLIELHERATHRHRF  480
            +++K L  A+V+TL+LS+LLPWL++D+I AMT VG+ MA W+ +L++ E  +R ++  + 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTK-  479

Query  481  FSGLRHLSRSHWGMVLGHLGVAVTVIGIAFSQNYSVERDVRMKAGDSVDINQYHFTFRDV  540
             ++L     S WGMV +HLG+AVT+ GIAFSQNYSVERDVRM+AGDSV I++Y+FTFR+V
Sbjct  480  -TSL-----SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  ARLQGPNYSGGVGLIDVTRNGHDEATLRAEKRYYSAARTMMTEAAIDGGFTRDLYAALGE  600
              + GPNY GGV+LI+VTR+G+ EA L+AEKR Y+++R +MTEAAIDGG+TRDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELDGDSWAVRLYYKPFVRWIWFGGVLMALGGVLCLLDPRYRVRKQSPED  649
            ELD ++WAVRLYYKPFVRWIW GG+LMALGG+LCL DPRYR RK  PE 
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEA  642

219) ccmF in NC_013961


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  576 bits (2177),  Expect = 1e-165, Method: Compositional matrix adjust.
 Identities = 469/649 (73%), Positives = 570/649 (88%), Gaps = 7/649 (1%)

Query  1    MIPEIGsfllclalalslllsaYPLWGAARQDLRLMGLARPLScalfaciaaaflilVHA  60
            M+PE G  LLCLAL+++LLLS YPLWG AR D R+M+ A  ++  LF C+A+AF++LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFSVAYVAANSNTLLPVYYRVAASWGAHEgslllwvlllsgwtlalallSRTMPLE  120
            FVVNDF+VAYVA+NSNT LPV YRVAA+WGAHEGSLLLWVLL+SGWTLA+A++SR +P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AIARVLAVMGMINLGFLLFITLTSNPFSRTLPDFPIEGSDLNPMLQDIGLIFHPPLLYMG  180
             +ARVLAVMGM+  GFL FI +TS PF+RTLP FP+EG DLNP+LQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMTGRLDTAWSRWSRPWTTAAWVFLTIGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLD+A +R +RPWT AAWVFLT+GIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALIHSLAVTEKRGTFKAWTVLLAITAFSLSLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTAL+HS+AVTE+R+ FKAWT+LL+I AFSL LLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFLIIVIGGSLLLYAINGGKVRSRVQNEVWSRESFLLGNNvlli  360
            SVHAFASDPARGMFILAF+++V GGSLLL+A+ G +VRSRV+N +WSRES+LLGNNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGTISIGEPFFNTLFSWlmaplalllgigplVRWRRDEPQ  420
            AAMLVVLLGTLLPLVHKQLGLG+IS+GEPFFNT+F+WLM P+ALLLG+GPLVRW RD P+
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLWKRlalalvatlllsillPWLMQDRIEAMTVVGLLMALWVIILTLIELHERATHRHRF  480
            +++K L  A+V+TL+LS+LLPWL++D+I AMT VG+ MA W+ +L++ E  +R ++  + 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTK-  479

Query  481  FSGLRHLSRSHWGMVLGHLGVAVTVIGIAFSQNYSVERDVRMKAGDSVDINQYHFTFRDV  540
             ++L     S WGMV +HLG+AVT+ GIAFSQNYSVERDVRM+AGDSV I++Y+FTFR+V
Sbjct  480  -TSL-----SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  ARLQGPNYSGGVGLIDVTRNGHDEATLRAEKRYYSAARTMMTEAAIDGGFTRDLYAALGE  600
              + GPNY GGV+LI+VTR+G+ EA L+AEKR Y+++R +MTEAAIDGG+TRDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELDGDSWAVRLYYKPFVRWIWFGGVLMALGGVLCLLDPRYRVRKQSPED  649
            ELD ++WAVRLYYKPFVRWIW GG+LMALGG+LCL DPRYR RK  PE 
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEA  642

220) ccmF in NC_010694


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  567 bits (2140),  Expect = 1e-162, Method: Compositional matrix adjust.
 Identities = 468/645 (73%), Positives = 564/645 (88%), Gaps = 7/645 (1%)

Query  1    MIPEIGSFllclalalalllSVYPLWGAARQDLRLMGLARPLSYalfaciaaaflilVHA  60
            M+PE G  LLCLAL++ALLLSVYPLWG AR D R+M+ A  ++  LF C+A+AF++LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVNDFSVTYVASNSNTLLPVYYRVAATWGAHEgslllwvlllsgwtlAVALLSRNMPLE  120
            FVVNDF+V+YVA+NSNT LPV YRVAATWGAHEGSLLLWVLL+SGWTLAVA++SR++P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AIARVLAVMGMINLGFLLFITLTSNPFSRTLPDFPIEGSDLNPMLQDIGLIFHPPLLYMG  180
             +ARVLAVMGM+  GFL FI +TS PF+RTLP FP+EG DLNP+LQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMAGRLDTAWARWSRPWTTAAWVFLTIGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLD+A +R +RPWT AAWVFLT+GIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALIHSLAVTEKRGTFKAWTVLLAITAFSLSLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTAL+HS+AVTE+R+ FKAWT+LL+I AFSL LLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFLIIVIGGSLLLYAIKGSKVRSRVQNEVWSRESFLLGNNvlli  360
            SVHAFASDPARGMFILAF+++V GGSLLL+A++G +VRSRV+N +WSRES+LLGNNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKQLGLGTISIGEPFFNMLFTWlmaplalllgigplVRWRRDEPQ  420
            AAMLVVLLGTLLPLVHKQLGLG+IS+GEPFFN +FTWLM P+ALLLG+GPLVRW RD P+
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KLWRRlglalvvtlllsillpwlMQDRIEAMTVVGLLMALWVIILTLMELHERATHrhrf  480
            ++++ L  A+V TL+LS+LLPWL++D+I AMT VG+ MA W+ +L++ E  +R ++    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSR----  476

Query  481  frglrhlsrsHWGMVLGHLGVAVTVIGIAFSQNYSVERDVRMKAGDSVDINRYHFTFRDV  540
                   S S WGMV +HLG+AVT+ GIAFSQNYSVERDVRM+AGDSV I+ Y+FTFR+V
Sbjct  477  ---GTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  DRLQGPNYTGGVGLIDVTRNGHYEATLRAEKRYYSAARTMMTEAAIDGGFTRDLYAALGE  600
              + GPNY GGV+LI+VTR+G+ EA L+AEKR Y+++R +MTEAAIDGG+TRDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELDGHSWAVRLYYKPFVRWIWFGGVFMALGGILCLLDPRYRTRKQ  645
            ELD  +WAVRLYYKPFVRWIW GG++MALGG+LCL DPRYR RK 
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKP  638

221) GU3_13205 in NC_016745


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  566 bits (2137),  Expect = 2e-162, Method: Compositional matrix adjust.
 Identities = 410/652 (63%), Positives = 533/652 (82%), Gaps = 9/652 (1%)

Query  1    MIPELGQFTlvlalasalvlsIYPLLGAVRGNTAMMLLARPLAYAQFGFLFISFLCLTWA  60
            M+PE G+  L LAL+ AL+LS+YPL G  RG++ MM  A  +A   F  +  +F+ L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVEHDFTVLYVASNSNSLLPLAYRISAVWGAHEGSLLLWVLILAGWTAAVARFSRALPLD  120
            FV +DFTV YVA+NSN+ LP+ YR++A WGAHEGSLLLWVL+++GWT AVA FSR +P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLSVMGMIAIGFLLFVLFTSNPFERTLPFFPVDGRDLNPLLQDPGLIFHPPMLYMG  180
             VARVL+VMGM+  GFL F+LFTS PF RTLP FPV+GRDLNPLLQDPGLIFHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMTGKLDAAWARWSRPWTMAAWIFLTLGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++G+LD+A +R +RPWT+AAW+FLTLGI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALIHSLAVTEKRASFKAWTVLLAIMAFSLSLLGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTAL+HS+AVTE+RA+FKAWT+LL+I AFSL LLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPTRglfiliflllvvgsslllYAIKGAEVRSHGKHELASRESLLLGNNIVLM  360
            SVHAFASDP+RG+FIL F++LV G+SLLL+A++G  VRS+ ++ L SRESLLLGNN++LM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  AGLVVVLIGTLLPLVHKELGMGSISIGAPFFNSLYAWLIIPFALLLGAGPLFRWRRQPMK  420
            A+++VVL+GTLLPLVHK+LG+GSIS+G PFFN++++WL++PFALLLG GPL RW R+  +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  EVNGKlllalvlsivlgialPVLFSDHFEPWAAVGIGLGVFITITSLQETWVRATHRHSF  480
            ++   L  A+V ++VL++ LP L+ D + + +AVG++++  I++ ++ E+ V+   R + 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEA-VQRVSRGT-  478

Query  481  LTGVRKLGNSHWAMILGHIGLAVSIIGIACTQLYSIERDVRMSKGDTVTFADYTFTFEGT  540
                 K + S W+M+ +H+GLAV+I GIA +Q YS+ERDVRM  GD+VT+ DY FTF   
Sbjct  479  -----KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  RQADGPNFEGFEGVISVAKNGRPLTELRAEKRMYVVQRMAMTEAAIDAGITRDLYAALGE  600
            R+  GPN+ G  ++I+V+++G P + L+AEKR+Y   RM MTEAAID+G+TRDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELDDGAWAVRLYYKPFVRWIWFGALLMAIGGVIAIVDKRYRFGRRQAGEEAA  652
            ELD+GAWAVRLYYKPFVRWIW G+LLMA+GG++ + D RYR  RR++  EA+
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR--RRKPLPEAG  643

222) ST548_p6664 in NC_020181


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  558 bits (2105),  Expect = 8e-160, Method: Compositional matrix adjust.
 Identities = 464/650 (72%), Positives = 561/650 (87%), Gaps = 7/650 (1%)

Query  1    MMPELGNYllclaaglalllSIFPLWGAARQERWLMALARPLACALFICIIGAFALLVHA  60
            MMPE G+ LLCLA G+ALLLS++PLWG AR + ++MA A  +A  LFIC+ GAF +LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVINDFTVRYVAENSNSALPVWYRVAATWGAHEGslllwvlllsvwTFAVALFSRQMPPD  120
            FV+NDFTV YVA NSN+ LPVWYRVAATWGAHEGSLLLWVLL+S WT+AVA+FSRQ+P+D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLAVMGMIAFGFLLFILFTSNPFSRSLPLYPVDGRDLNPMLQDIGMIFHPPILYMG  180
             VARVLAVMGM+  GFL FILFTS PF+R+LP +PV+GRDLNP+LQD G+IFHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLAGRLDTAWARWSRPWTQAAWMFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LL+GRLD+A +R +RPWT AAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALLHSLAVTEKRGSFRAWTVllalaafslcllGTFLVRSGVLV  300
            FWDPVENASFMPWL GTALLHS+AVTE+R++F+AWT+LL++ AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPARGMFilalltlaiggslllYAVKGGRVRARVEHTLWSRESFLLGNNIllm  360
            SVH+FASDPARGMFILA++ L  GGSLLL+AV+G RVR+RV+++LWSRES+LLGNN+LLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKALGLGTISIGEPFFNTMFTalmapfalllglgplIRWRRDEPG  420
            AAMLVVLLGTLLPLVHK LGLG+IS+GEPFFNTMFT LM PFALLLG+GPL+RW RD P 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KQLKRLAISLIVTlslslalpwllQDRITAMAFIGLMMALWVLIFALIEVHERATHRHGF  480
            +  K L  +++ TL LS+ LPWLL+D+I AM+ +G+ MA W+ ++A+ E  +R +     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  481  WRGLRTLTRSQWGMVLGHVGVAVTVIGITFSQNYSIERDVRMRAGDSLDIHRYHFVFKGV  540
             RG +T + S WGMV +H+G+AVT+ GI+FSQNYS+ERDVRMRAGDS+ IH Y+F F+ V
Sbjct  476  -RGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  RNIVGPNWNGGEGVIAVSRNGRPEATLYAEKRFYTASRMMMTEAAISGGFTRDLYAALGE  600
            R+I GPN  GG ++I+V+R+G PEA L AEKR+Y +SRM+MTEAAI GG+TRDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELDDGSWAVRLYYKPFVRWIWYGGVLMALGGLCCMLDPRYRRSRQQKTAA  650
            ELD+G+WAVRLYYKPFVRWIW GG+LMALGGL C+ DPRYRR +    A+
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

223) EAE_17485 in NC_015663


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  558 bits (2105),  Expect = 8e-160, Method: Compositional matrix adjust.
 Identities = 464/650 (72%), Positives = 561/650 (87%), Gaps = 7/650 (1%)

Query  1    MMPELGNYllclaaglalllSIFPLWGAARQERWLMALARPLACALFICIIGAFALLVHA  60
            MMPE G+ LLCLA G+ALLLS++PLWG AR + ++MA A  +A  LFIC+ GAF +LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVINDFTVRYVAENSNSALPVWYRVAATWGAHEGslllwvlllsvwTFAVALFSRQMPPD  120
            FV+NDFTV YVA NSN+ LPVWYRVAATWGAHEGSLLLWVLL+S WT+AVA+FSRQ+P+D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLAVMGMIAFGFLLFILFTSNPFSRSLPLYPVDGRDLNPMLQDIGMIFHPPILYMG  180
             VARVLAVMGM+  GFL FILFTS PF+R+LP +PV+GRDLNP+LQD G+IFHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLAGRLDTAWARWSRPWTQAAWMFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LL+GRLD+A +R +RPWT AAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALLHSLAVTEKRGSFRAWTVllalaafslcllGTFLVRSGVLV  300
            FWDPVENASFMPWL GTALLHS+AVTE+R++F+AWT+LL++ AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPARGMFilalltlaiggslllYAVKGGRVRARVEHTLWSRESFLLGNNIllm  360
            SVH+FASDPARGMFILA++ L  GGSLLL+AV+G RVR+RV+++LWSRES+LLGNN+LLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKALGLGTISIGEPFFNTMFTalmapfalllglgplIRWRRDEPG  420
            AAMLVVLLGTLLPLVHK LGLG+IS+GEPFFNTMFT LM PFALLLG+GPL+RW RD P 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  KQLKRLAISLIVTlslslalpwllQDRITAMAFIGLMMALWVLIFALIEVHERATHRHGF  480
            +  K L  +++ TL LS+ LPWLL+D+I AM+ +G+ MA W+ ++A+ E  +R +     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  481  WRGLRTLTRSQWGMVLGHVGVAVTVIGITFSQNYSIERDVRMRAGDSLDIHRYHFVFKGV  540
             RG +T + S WGMV +H+G+AVT+ GI+FSQNYS+ERDVRMRAGDS+ IH Y+F F+ V
Sbjct  476  -RGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  RNIVGPNWNGGEGVIAVSRNGRPEATLYAEKRFYTASRMMMTEAAISGGFTRDLYAALGE  600
            R+I GPN  GG ++I+V+R+G PEA L AEKR+Y +SRM+MTEAAI GG+TRDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELDDGSWAVRLYYKPFVRWIWYGGVLMALGGLCCMLDPRYRRSRQQKTAA  650
            ELD+G+WAVRLYYKPFVRWIW GG+LMALGGL C+ DPRYRR +    A+
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

224) ccmF in NC_017445


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  556 bits (2099),  Expect = 2e-159, Method: Compositional matrix adjust.
 Identities = 455/629 (73%), Positives = 550/629 (88%), Gaps = 7/629 (1%)

Query  22   VYPLWGAARQDLRLMGMARPLSYalfaciaaaflilVHAFVVNDFSVTYVATHSNTLLPV  81
            VYPLWG AR D R+M+ A  ++  LF C+A+AF++LVHAFVVNDF+V+YVA +SNT LPV
Sbjct  22   VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   YYRMAATWGAHEgslllwvlllsgwtlAVALLSRTMPLEAVARVLAVMGIINLGFLLFIT  141
             YR+AATWGAHEGSLLLWVLL+SGWTLAVA++SR +P + VARVLAVMG++  GFL FI 
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  LTSNPFSRTLPDFPIEGSDLNPMLQDIGLIFHPPLLYMGYVGFSVAFAFAIASLMSGRLD  201
            +TS PF+RTLP FP+EG DLNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L+SGRLD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  202  TAWARWSRPWTTAAWVFLTIGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALIH  261
            +A +R +RPWT AAWVFLT+GIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+H
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  262  SLAVTEKRGTFKAWTVLLAITAFSLSLLGTFLVRSGVLVSVHAFASDPARGMFilallii  321
            S+AVTE+R+ FKAWT+LL+I AFSL LLGTFLVRSGVLVSVHAFASDPARGMFILA++++
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  322  viggslllYAIKGGKVRSRVQNEVWSRESFLLGNNvlliaamlvvllgtllplvHKQLGL  381
            V GGSLLL+A++G +VRSRV+N +WSRES+LLGNNVLL+AAMLVVLLGTLLPLVHKQLGL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  382  GTISIGEPFFNTLFTWlmaplalllgigplVRWRRDEPQKLWKRlslalvvtlllsvllP  441
            G+IS+GEPFFNT+FTWLM P+ALLLG+GPLVRW RD P++++K L  A+V TL+LSVLLP
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLP  441

Query  442  WLMQDRIEAMTVVGLLMALWVIILTLMELHERATHRHRFVSGLRHLSRSHWGMVLGHLGV  501
            WL++D+I AMT VG+ MA W+ +L++ E  +R ++  +  ++L     S WGMV +HLG+
Sbjct  442  WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTK--TSL-----SYWGMVAAHLGL  494

Query  502  AVTVIGIAFSQNYSVERDVRMKAGDSVDINNYHFTFRDVARLQGPNYSGGVGLIDVTRNG  561
            AVT+ GIAFSQNYSVERDVRM+AGDSV I++Y+FTFR+V  + GPNY GGV+LI+VTR+G
Sbjct  495  AVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  562  HYEATLRAEKRYYSVARTMMTEAAIDGGFTRDLYAALGEELDGNSWAVRLYYKPFVRWIW  621
            + EA L+AEKR Y+ +R +MTEAAIDGG+TRDLYAALGEELD  +WAVRLYYKPFVRWIW
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

Query  622  FGGVFMALGGVLCLLDPRYRTRKQTPKES  650
             GG++MALGG+LCL DPRYR RK  P  +
Sbjct  615  AGGLLMALGGLLCLADPRYRRRKPLPEAG  643

225) ccmF in NC_009053


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  553 bits (2089),  Expect = 1e-158, Method: Compositional matrix adjust.
 Identities = 377/621 (61%), Positives = 505/621 (82%), Gaps = 7/621 (1%)

Query  1    MVAELGNYALALAFGLSIFLAILPLVGAQKQNSTLMALARPITWAMFLALTISFGSLFYL  60
            M++E G+  L LA+G++++L++ PL G  + ++ +MA A  ++W +F+ ++ +F  L   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FAVNDFSVQYVVNNSNSTLPIQYRLSAVWGSHEGsmllwvwllslwsIAVAAFSRQMPEE  120
            F VNDF+V YV  NSN+ LP+ YR++A WG+HEGS+LLWV L+S W++AVA FSRQ+P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVSRVLSVMGLISIGFLVFLIFSSNPFKRTFPDFPADGRELNPMLQDVGLIFHPPLLYMG  180
             V+RVL+VMG++  GFL F++F+S PF RT+P FP +GR+LNP+LQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMTGRLDTAWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLD+A +R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLMPWIAGTALIHSLAVTEKRGTFKAWTVllailafslcllGTFLVRSGILV  300
            FWDPVENAS+MPW+AGTAL+HS+AVTE+R+ FKAWT+LL+I AFSLCLLGTFLVRSG+LV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPTRGLYILAYLVLVIGGSLLLYALQGSKIKSLDNYERYSRESMLLINNVMLM  360
            SVHAFASDP+RG++ILA++VLV GGSLLL+A++G +++S  N    SRES+LL NNV+LM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  AFlsvvllgtllplvHKQIGLGTISIGAPFFDQMFLILMVPFSFILGIGPLVKWRRDQVS  420
            A + VVLLGTLLPLVHKQ+GLG+IS+G PFF+ MF  LMVPF+++LG+GPLV+W RD+  
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  AIRTPVIIALIMMVVLGFGLPYLLHDRITATSVLGVMMASIIVILSLYELHQRATHRHSF  480
             IR  +  A++  +VL+  LP LL+D+I A + +G+ MA  I +L++ E  QR ++    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT--  478

Query  481  LAGVFKLSRSHWGMVLAHVGVAMTVFGIAFSQNYSVEKNVRMNVGDTVSLQGYDFTFKGI  540
                 K S S WGMV AH+G+A+T+ GIAFSQNYSVE++VRM  GD+V++++Y FTF+ +
Sbjct  479  -----KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  KITDGANYQGGTAEIEISRQGQYESTLNAEKRFYNVSKMGMTEAAIDWGFRRDLYAALGE  600
            +   G+NY+GG A I ++R+G+ E+ L+AEKR+YN S+M MTEAAID G+ RDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  KLEDGSWGVRLYYKPFVRWIW  621
             L++G+W+VRLYYKPFVRWIW
Sbjct  594  ELDNGAWAVRLYYKPFVRWIW  614

226) APP7_1418 in NC_010939


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  553 bits (2089),  Expect = 1e-158, Method: Compositional matrix adjust.
 Identities = 377/621 (61%), Positives = 505/621 (82%), Gaps = 7/621 (1%)

Query  1    MVAELGNYALALAFGLSIFLAILPLVGAQKQNSTLMALARPITWAMFLVLTISFGSLFYL  60
            M++E G+  L LA+G++++L++ PL G  + ++ +MA A  ++W +F+ ++ +F  L   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FAVNDFSVQYVVNNSNSTLPIQYRLSAVWGSHEGsmllwvwllslwsIAVAAFSRQMPEE  120
            F VNDF+V YV  NSN+ LP+ YR++A WG+HEGS+LLWV L+S W++AVA FSRQ+P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVSRVLSVMGLISIGFLVFLIFSSNPFKRTFPDFPADGRELNPMLQDVGLIFHPPLLYMG  180
             V+RVL+VMG++  GFL F++F+S PF RT+P FP +GR+LNP+LQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMTGRLDTAWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLD+A +R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLMPWIAGTALIHSLAVTEKRGTFKAWTVllailafslcllGTFLVRSGILV  300
            FWDPVENAS+MPW+AGTAL+HS+AVTE+R+ FKAWT+LL+I AFSLCLLGTFLVRSG+LV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPTRGLYILAYLVLVIGGSLLLYALQGSKIKSLDNYERYSRESMLLINNVMLM  360
            SVHAFASDP+RG++ILA++VLV GGSLLL+A++G +++S  N    SRES+LL NNV+LM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  AFlsvvllgtllplvHKQIGLGTISIGAPFFDQMFLILMVPFSFILGIGPLVKWRRDQVS  420
            A + VVLLGTLLPLVHKQ+GLG+IS+G PFF+ MF  LMVPF+++LG+GPLV+W RD+  
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  AIRTPVIIALIMMVVLGFGLPYLLHDRITATSVLGVMMASIIVILSLYELHQRATHRHSF  480
             IR  +  A++  +VL+  LP LL+D+I A + +G+ MA  I +L++ E  QR ++    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT--  478

Query  481  LAGVFKLSRSHWGMVLAHVGVAMTVFGIAFSQNYSVEKNVRMNVGDTVSLQGYDFTFKGI  540
                 K S S WGMV AH+G+A+T+ GIAFSQNYSVE++VRM  GD+V++++Y FTF+ +
Sbjct  479  -----KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  KITDGANYQGGTAEIEISRQGQYESTLNAEKRFYNVSKMGMTEAAIDWGFRRDLYAALGE  600
            +   G+NY+GG A I ++R+G+ E+ L+AEKR+YN S+M MTEAAID G+ RDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  KLEDGSWGVRLYYKPFVRWIW  621
             L++G+W+VRLYYKPFVRWIW
Sbjct  594  ELDNGAWAVRLYYKPFVRWIW  614

227) CGSHiEE_06595 in NC_009566


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  552 bits (2084),  Expect = 3e-158, Method: Compositional matrix adjust.
 Identities = 390/620 (63%), Positives = 499/620 (81%), Gaps = 7/620 (1%)

Query  22   IFPLWGAEKGNAQLMALARPMTYGlfaslsiafaalfylfaVNDFSVQYIVNNSNTTLPI  81
            ++PLWG  +G+A++MA A   +  LF  ++ AF  L   F VNDF+V Y+  NSNT LP+
Sbjct  22   VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   YYRLSAVWGSHEGSLLLWIWLLAVWSFAVALLSKHLPQEAVARVLGIMGIISVGFVLFVL  141
             YR++A WG+HEGSLLLW+ L++ W++AVA++S+++P + VARVL++MG++  GF+ F+L
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  FTSNPFTRTFPDFPVDGKELNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGKLD  201
            FTS PF+RT+P FPV+G++LNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++G+LD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  202  SAWARWSRPWTLAAWVFLTLGIVLGSWWAYYELGWGGWWFWDPVENSSFMPWLAGTALIH  261
            SA +R +RPWTLAAWVFLTLGIVLGS WAYYELGWGGWWFWDPVEN+SFMPWLAGTAL+H
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  262  SLSVTEKRGSFKAWTVllailafslcllGTFLVRSGILVSVHAFASDPTRGLYILAYLVV  321
            S++VTE+R++FKAWT+LL+I AFSLCLLGTFLVRSG+LVSVHAFASDP+RG++ILA++V+
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  322  VIGGSLALYAYKGSQIRSRDNAERYSRESmlllnnillmTALCVVFLGTLLPLVHKQLGL  381
            V GGSL L+A +G ++RSR N    SRES+LL NN+LLM+A+ VV+LGTLLPLVHKQLGL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  382  GSISIGAPFFDQMFLIIMTPFALLLGIGPLVKWRRDQFSAIRTPVVICVFVMLIAGFALP  441
            GSIS+G PFF+ MF  +M PFALLLG+GPLV+W RD+   IR  +   V   L+ +  LP
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLP  441

Query  442  YFLQDKITVSSVLGSMMTVIIALLALYELQQRATHRESFFVGVRKLSRSHWGMMLAHLGV  501
             +L+DKI   + +G  M+  IA+LA+ E  QR ++         K S S WGM+ AHLG+
Sbjct  442  WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT-------KTSLSYWGMVAAHLGL  494

Query  502  AMTVWGIAFSQNFSVERDVRMKVGESAQIGRYDFKFAGVTDVNGPNYIGGKAQIDISKNG  561
            A+T+ GIAFSQN+SVERDVRM+ G+S  I  Y F F  V D+ GPNY GG A I+++++G
Sbjct  495  AVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  562  QPEASLFAEKRFYTVSRMSMTEAAIAGGLTRDLYVALGEKLEDNSWALRLYYKPFIRWIW  621
            +PEA L AEKR+Y  SRM MTEAAI GGLTRDLY ALGE L++ +WA+RLYYKPF+RWIW
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

Query  622  IGGLFMALGGLLCMFDRRYR  641
             GGL+MALGGLLC+ D RYR
Sbjct  615  AGGLLMALGGLLCLADPRYR  634

228) HICON_01940 in NC_014922


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  550 bits (2077),  Expect = 9e-158, Method: Compositional matrix adjust.
 Identities = 373/600 (63%), Positives = 481/600 (81%), Gaps = 7/600 (1%)

Query  22   IFPLWGAEKGNVQLMALARPMTYGlfaslsiafaalfylfaVNDFSVQYIVNNSNTTLPI  81
            ++PLWG  +G+ ++MA A   +  LF  ++ AF  L   F VNDF+V Y+  NSNT LP+
Sbjct  22   VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   YYRLSAVWGSHEGSLLLWIWLLAVWSFAVALLSKHLPQEAVARVLGIMGIISVGFVLFVL  141
             YR++A WG+HEGSLLLW+ L++ W++AVA++S+++P + VARVL++MG++  GF+ F+L
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  FTSNPFTRTFPDFPVDGKELNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGKLD  201
            FTS PF+RT+P FPV+G++LNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++G+LD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  202  SAWARWSRPWTLAAWVFLTLGIVLGSWWAYYELGWGGWWFWDPVENSSFMPWLAGTALIH  261
            SA +R +RPWTLAAWVFLTLGIVLGS WAYYELGWGGWWFWDPVEN+SFMPWLAGTAL+H
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  262  SLSVTEKRGSFKAWTVllailafslcllGTFLVRSGILVSVHAFASDPTRGLYILAYLVV  321
            S++VTE+R++FKAWT+LL+I AFSLCLLGTFLVRSG+LVSVHAFASDP+RG++ILA++V+
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  322  VIGGSLALYAYKGSQIRSRDNAERYSRESmlllnnillmTALCVVFLGTLLPLVHKQLGL  381
            V GGSL L+A +G ++RSR N    SRES+LL NN+LLM+A+ VV+LGTLLPLVHKQLGL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  382  GSISIGAPFFDQMFLIIMTPFALLLGIGPLVKWRRDQFSAIRTPVVISVFVMLIAGFALP  441
            GSIS+G PFF+ MF  +M PFALLLG+GPLV+W RD+   IR  +  +V   L+ +  LP
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLP  441

Query  442  YFLQDKITVSSVLGSMMTVIIALLALYELQQRATHRESFFVGVRKLSRSHWGMMLAHLGV  501
             +L+DKI   + +G  M+  IA+LA+ E  QR ++         K S S WGM+ AHLG+
Sbjct  442  WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT-------KTSLSYWGMVAAHLGL  494

Query  502  AMTVWGIAFSQNFSVERDVRMKVGENAQIGRYDFKFVGVTDENGPNYVGGKAQIDISKDG  561
            A+T+ GIAFSQN+SVERDVRM+ G++  I  Y F F  V D  GPNY GG A I+++++G
Sbjct  495  AVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  562  QPEASLFAEKRFYTVSRMSMTEAAIAGGLTRDLYVALGEKLEDNSWALRLYYKPFIRWIW  621
            +PEA L AEKR+Y  SRM MTEAAI GGLTRDLY ALGE L++ +WA+RLYYKPF+RWIW
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

229) ccmF in NC_000907


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  550 bits (2077),  Expect = 9e-158, Method: Compositional matrix adjust.
 Identities = 375/600 (63%), Positives = 481/600 (81%), Gaps = 7/600 (1%)

Query  22   IFPLWGAEKGNAQLMALARPMTYGlfaslsiafaalfylfaVNDFSVQYIVNNSNTTLPI  81
            ++PLWG  +G+A++MA A   +  LF  ++ AF  L   F VNDF+V Y+  NSNT LP+
Sbjct  22   VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   YYRLSAVWGSHEGSLLLWIWLLAVWSFAVALLSKHLPQEAVARVLGIMGIISVGFVLFVL  141
             YR++A WG+HEGSLLLW+ L++ W++AVA++S+++P + VARVL++MG++  GF+ F+L
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  FTSNPFTRTFPDFPVDGKELNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGKLD  201
            FTS PF+RT+P FPV+G++LNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++G+LD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  202  SAWARWSRPWTLAAWVFLTLGIVLGSWWAYYELGWGGWWFWDPVENSSFMPWLAGTALIH  261
            SA +R +RPWTLAAWVFLTLGIVLGS WAYYELGWGGWWFWDPVEN+SFMPWLAGTAL+H
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  262  SLSVTEKRGSFKAWTVllailafslcllGTFLVRSGILVSVHAFASDPTRGLYILAYLVV  321
            S++VTE+R++FKAWT+LL+I AFSLCLLGTFLVRSG+LVSVHAFASDP+RG++ILA++V+
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  322  VIGGSLALYAYKGSQIRSRDNAERYSRESmlllnnillmTALCVVFLGTLLPLVHKQLGL  381
            V GGSL L+A +G ++RSR N    SRES+LL NN+LLM+A+ VV+LGTLLPLVHKQLGL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  382  GSISIGAPFFDQMFLIIMTPFALLLGIGPLVKWRRDQFSAIRTPVVICVFVMLIAGFALP  441
            GSIS+G PFF+ MF  +M PFALLLG+GPLV+W RD+   IR  +   V   L+ +  LP
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLP  441

Query  442  YFLQDKITVSSVLGSMMTVIIALLALYELQQRATHRESFFVGVRKLSRSHWGMMLAHLGV  501
             +L+DKI   + +G  M+  IA+LA+ E  QR ++         K S S WGM+ AHLG+
Sbjct  442  WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT-------KTSLSYWGMVAAHLGL  494

Query  502  AMTVWGIAFSQNFSVERDVRMKVGESAQIGRYDFKFTGVTDENGPNYIGGKAQIDISKDG  561
            A+T+ GIAFSQN+SVERDVRM+ G+S  I  Y F F  V D  GPNY GG A I+++++G
Sbjct  495  AVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  562  QPEASLFAEKRFYTVSRMSMTEAAIAGGLTRDLYVALGEKLEDNSWALRLYYKPFIRWIW  621
            +PEA L AEKR+Y  SRM MTEAAI GGLTRDLY ALGE L++ +WA+RLYYKPF+RWIW
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

230) ccmF in NC_022356


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  550 bits (2077),  Expect = 9e-158, Method: Compositional matrix adjust.
 Identities = 371/600 (62%), Positives = 480/600 (80%), Gaps = 7/600 (1%)

Query  22   IFPLWGAEKGNAQLMALARPMTYGlfaslsiafaalfylfaVNDFSVQYIVNNSNTTLPI  81
            ++PLWG  +G+A++MA A   +  LF  ++ AF  L   F VNDF+V Y+  NSNT LP+
Sbjct  22   VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   YYRLSAVWGSHEGSLLLWIWLLAVWSFAVALLSKHLPQEAVARVLGIMGIISVGFVLFVL  141
             YR++A WG+HEGSLLLW+ L++ W++AVA++S+++P + VARVL++MG++  GF+ F+L
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  FTSNPFTRTFPDFPVDGKELNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGKLD  201
            FTS PF+RT+P FPV+G++LNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++G+LD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  202  SAWARWSRPWTLAAWVFLTLGIVLGSWWAYYELGWGGWWFWDPVENSSFMPWLAGTALIH  261
            SA +R +RPWTLAAWVFLTLGIVLGS WAYYELGWGGWWFWDPVEN+SFMPWLAGTAL+H
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  262  SLSVTEKRGSFKAWTVllailafslcllGTFLVRSGILVSVHAFASDPTRGLYILAYLVV  321
            S++VTE+R++FKAWT+LL+I AFSLCLLGTFLVRSG+LVSVHAFASDP+RG++ILA++V+
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  322  VIGGSLALYAYKGSQIRSRDNAERYSRESmlllnnillmTALCVVFLGTLLPLVHKQLGL  381
            V GGSL L+A +G ++RSR N    SRES+LL NN+LLM+A+ VV+LGTLLPLVHKQLGL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  382  GSISIGAPFFDQMFLIIMTPFALLLGIGPLVKWRRDQFSAIRTPVVISVFVMLIAGFALP  441
            GSIS+G PFF+ MF  +M PFALLLG+GPLV+W RD+   IR  +  +V   L+ +  LP
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLP  441

Query  442  YFLQDKITVSSVLGSMMTVIIVLLVLYELQQRATHRESFFVGVRKLSRSHWGMMLAHLGV  501
             +L+DKI   + +G  M+  I +L + E  QR ++         K S S WGM+ AHLG+
Sbjct  442  WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT-------KTSLSYWGMVAAHLGL  494

Query  502  AMTVWGIAFSQNFSVERDVRMKVGENAQIGRYDFKFAGVTDENGPNYIGGKAQIDISKDG  561
            A+T+ GIAFSQN+SVERDVRM+ G++  I  Y F F  V D  GPNY GG A I+++++G
Sbjct  495  AVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  562  QPETSLFAEKRFYTVSRMSMTEAAIAGGLTRDLYVALGEKLEDNSWALRLYYKPFIRWIW  621
            +PE+ L AEKR+Y  SRM MTEAAI GGLTRDLY ALGE L++ +WA+RLYYKPF+RWIW
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

231) ccmF in NC_010278


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  550 bits (2077),  Expect = 9e-158, Method: Compositional matrix adjust.
 Identities = 376/621 (61%), Positives = 504/621 (82%), Gaps = 7/621 (1%)

Query  1    MVAELGNYALALAFGLSIFLAILPLVGAQKQNSTLMALARPITWAMFLALTISFGSLFYL  60
            M++E G+  L LA+G++++L++ PL G  + ++ +MA A  ++W +F+ ++ +F  L   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FAVNDFSVQYVVNNSNSTLPIQYRLSAVWGSHEGsmllwvwllslwsIAVAAFSRQMPEE  120
            F VNDF+V YV  NSN+ LP+ YR++A WG+HEGS+LLWV L+S W++AVA FSRQ+P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVSRVLSVMGLISIGFLVFLIFSSNPFKRTFPDFPADGRELNPMLQDVGLIFHPPLLYMG  180
             V+RVL+VMG++  GFL F++F+S PF RT+P FP +GR+LNP+LQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMTGRLDTAWARWSRLWTMAAWVFLTLGIVLGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLD+A +R +R WT+AAWVFLTLGIVLGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLMPWIAGTALIHSLAVTEKRGTFKAWTVllailafslcllGTFLVRSGILV  300
            FWDPVENAS+MPW+AGTAL+HS+AVTE+R+ FKAWT+LL+I AFSLCLLGTFLVRSG+LV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPTRGLYILAYLVLVIGGSLLLYALQGSKIKSLDNYERYSRESMLLINNVMLM  360
            SVHAFASDP+RG++ILA++VLV GGSLLL+A++G +++S  N    SRES+LL NNV+LM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  AFlsvvllgtllplvHKQIGLGTISIGAPFFDQMFLILMVPFSFILGIGPLVKWRRDQVS  420
            A + VVLLGTLLPLVHKQ+GLG+IS+G PFF+ MF  LMVPF+++LG+GPLV+W RD+  
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  AIRTPVIIALIMMVVLGFGLPYLLHDRITATSVLGVMMASIIVILSLYELHQRATHRHSF  480
             IR  +  A++  +VL+  LP LL+D+I A + +G+ MA  I +L++ E  QR ++    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT--  478

Query  481  LAGVFKLSRSHWGMVLAHVGVAMTVFGIAFSQNYSVEKNVRMNVGDTVSLQGYDFTFKGI  540
                 K S S WGMV AH+G+A+T+ GIAFSQNYSVE++VRM  GD+V++++Y FTF+ +
Sbjct  479  -----KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  KITDGANYQGGTAEIEISRQGQYESTLNAEKRFYNVSKMGMTEAAIDWGFRRDLYAALGE  600
            +   G+NY+GG A I ++R+G+ E+ L+AEKR+YN S+M MTEAAID G+ RDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  KLEDGSWGVRLYYKPFVRWIW  621
             L++G+W+VRLYYKPFVRWIW
Sbjct  594  ELDNGAWAVRLYYKPFVRWIW  614

232) ccmF in NC_017390


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  549 bits (2073),  Expect = 2e-157, Method: Compositional matrix adjust.
 Identities = 451/624 (73%), Positives = 546/624 (88%), Gaps = 7/624 (1%)

Query  22   VYPLWGAARQDLRLMGMARPLSYalfaciaaaflilVHAFVVNDFSVTYVATHSNTLLPV  81
            VYPLWG AR D R+M+ A  ++  LF C+A+AF++LVHAFVVNDF+V+YVA +SNT LPV
Sbjct  22   VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   YYRMAATWGAHEgslllwvlllsgwtlAVALLSRTMPLEAVARVLAVMGIINLGFLLFIT  141
             YR+AATWGAHEGSLLLWVLL+SGWTLAVA++SR +P + VARVLAVMG++  GFL FI 
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  LTSNPFSRTLPDFPIEGSDLNPMLQDIGLIFHPPLLYMGYVGFSVAFAFAIASLMSGRLD  201
            +TS PF+RTLP FP+EG DLNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L+SGRLD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  202  TAWARWSRPWTTAAWVFLTIGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALIH  261
            +A +R +RPWT AAWVFLT+GIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+H
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  262  SLAVTEKRGTFKAWTVLLAITAFSLSLLGTFLVRSGVLVSVHAFASDPARGMfilallii  321
            S+AVTE+R+ FKAWT+LL+I AFSL LLGTFLVRSGVLVSVHAFASDPARGMFILA++++
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  322  figgslllYAIKGGKVRSRVQNEVWSRESFLLGNNvlliaamlvvllgtllplvHKQLGL  381
              GGSLLL+A++G +VRSRV+N +WSRES+LLGNNVLL+AAMLVVLLGTLLPLVHKQLGL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  382  GTISIGAPFFNTLFTWlmaplalllgigplVRWRRDEPQKLWKRlslalvvtlllsvllP  441
            G+IS+G PFFNT+FTWLM P+ALLLG+GPLVRW RD P++++K L  A+V TL+LSVLLP
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLP  441

Query  442  WLMQDRIEAMTVVGLLMALWVIILTLMELHERATHRHRFVSGLRHLSRSHWGMVLGHLGV  501
            WL++D+I AMT VG+ MA W+ +L++ E  +R ++  +  ++L     S WGMV +HLG+
Sbjct  442  WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTK--TSL-----SYWGMVAAHLGL  494

Query  502  AVTVIGIAFSQNYSVERDVRMKTGDSVDINNYHFTFRDVDRLQGPNYSGGVGLIDVTRNG  561
            AVT+ GIAFSQNYSVERDVRM++GDSV I++Y+FTFR+V  + GPNY GGV+LI+VTR+G
Sbjct  495  AVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  562  HYEATLRAEKRYYSVARTMMTEAAIDGGFTRDLYAALGEELDGNSWAVRLYYKPFVRWIW  621
            + EA L+AEKR Y+ +R +MTEAAIDGG+TRDLYAALGEELD  +WAVRLYYKPFVRWIW
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

Query  622  FGGVFMALGGVLCLLDPRYRTRKQ  645
             GG++MALGG+LCL DPRYR RK 
Sbjct  615  AGGLLMALGGLLCLADPRYRRRKP  638

233) ccmF in NC_012214


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  549 bits (2073),  Expect = 2e-157, Method: Compositional matrix adjust.
 Identities = 451/624 (73%), Positives = 546/624 (88%), Gaps = 7/624 (1%)

Query  22   VYPLWGAARQDLRLMGMARPLSYalfaciaaaflilVHAFVVNDFSVTYVATHSNTLLPV  81
            VYPLWG AR D R+M+ A  ++  LF C+A+AF++LVHAFVVNDF+V+YVA +SNT LPV
Sbjct  22   VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   YYRMAATWGAHEgslllwvlllsgwtlAVALLSRTMPLEAVARVLAVMGIINLGFLLFIT  141
             YR+AATWGAHEGSLLLWVLL+SGWTLAVA++SR +P + VARVLAVMG++  GFL FI 
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  LTSNPFSRTLPDFPIEGSDLNPMLQDIGLIFHPPLLYMGYVGFSVAFAFAIASLMSGRLD  201
            +TS PF+RTLP FP+EG DLNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L+SGRLD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  202  TAWARWSRPWTTAAWVFLTIGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALIH  261
            +A +R +RPWT AAWVFLT+GIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL+H
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  262  SLAVTEKRGTFKAWTVLLAITAFSLSLLGTFLVRSGVLVSVHAFASDPARGMfilallii  321
            S+AVTE+R+ FKAWT+LL+I AFSL LLGTFLVRSGVLVSVHAFASDPARGMFILA++++
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  322  figgslllYAIKGGKVRSRVQNEVWSRESFLLGNNvlliaamlvvllgtllplvHKQLGL  381
              GGSLLL+A++G +VRSRV+N +WSRES+LLGNNVLL+AAMLVVLLGTLLPLVHKQLGL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  382  GTISIGAPFFNTLFTWlmaplalllgigplVRWRRDEPQKLWKRlslalvvtlllsvllP  441
            G+IS+G PFFNT+FTWLM P+ALLLG+GPLVRW RD P++++K L  A+V TL+LSVLLP
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLP  441

Query  442  WLMQDRIEAMTVVGLLMALWVIILTLMELHERATHRHRFVSGLRHLSRSHWGMVLGHLGV  501
            WL++D+I AMT VG+ MA W+ +L++ E  +R ++  +  ++L     S WGMV +HLG+
Sbjct  442  WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTK--TSL-----SYWGMVAAHLGL  494

Query  502  AVTVIGIAFSQNYSVERDVRMKTGDSVDINNYHFTFRDVDRLQGPNYSGGVGLIDVTRNG  561
            AVT+ GIAFSQNYSVERDVRM++GDSV I++Y+FTFR+V  + GPNY GGV+LI+VTR+G
Sbjct  495  AVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  562  HYEATLRAEKRYYSVARTMMTEAAIDGGFTRDLYAALGEELDGNSWAVRLYYKPFVRWIW  621
            + EA L+AEKR Y+ +R +MTEAAIDGG+TRDLYAALGEELD  +WAVRLYYKPFVRWIW
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

Query  622  FGGVFMALGGVLCLLDPRYRTRKQ  645
             GG++MALGG+LCL DPRYR RK 
Sbjct  615  AGGLLMALGGLLCLADPRYRRRKP  638

234) ccmF in NC_007146


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  549 bits (2073),  Expect = 2e-157, Method: Compositional matrix adjust.
 Identities = 370/600 (62%), Positives = 479/600 (80%), Gaps = 7/600 (1%)

Query  22   IFPLWGAEKGNVQLMALARPMTYGlfaslsiafaalfylfaVNDFSVQYIVNNSNTTLPI  81
            ++PLWG  +G+ ++MA A   +  LF  ++ AF  L   F VNDF+V Y+  NSNT LP+
Sbjct  22   VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   YYRLSAVWGSHEGSLLLWIWLLAVWSFAVALLSKHLPQEAVARVLGIMGIISVGFVLFVL  141
             YR++A WG+HEGSLLLW+ L++ W++AVA++S+++P + VARVL++MG++  GF+ F+L
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  FTSNPFTRTFPDFPVDGKELNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGKLD  201
            FTS PF+RT+P FPV+G++LNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++G+LD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  202  SAWARWSRPWTLAAWVFLTLGIVLGSWWAYYELGWGGWWFWDPVENSSFMPWLAGTALIH  261
            SA +R +RPWTLAAWVFLTLGIVLGS WAYYELGWGGWWFWDPVEN+SFMPWLAGTAL+H
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  262  SLSVTEKRGSFKAWTVllailafslcllGTFLVRSGILVSVHAFASDPTRGLYILAYLVV  321
            S++VTE+R++FKAWT+LL+I AFSLCLLGTFLVRSG+LVSVHAFASDP+RG++ILA++V+
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  322  VIGGSLALYAYKGSQIRSRDNAERYSRESmlllnnillmTALCVVFLGTLLPLVHKQLGL  381
            V GGSL L+A +G ++RSR N    SRES+LL NN+LLM+A+ VV+LGTLLPLVHKQLGL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  382  GSISIGAPFFDQMFLIIMTPFALLLGIGPLVKWRRDQFSAIRTPVVISVFVMLIAGFALP  441
            GSIS+G PFF+ MF  +M PFALLLG+GPLV+W RD+   IR  +  +V   L+ +  LP
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLP  441

Query  442  YFLQDKITVSSVLGSMMTVIIVLLVLYELQQRATHRESFFVGVRKLSRSHWGMMLAHLGV  501
             +L+DKI   + +G  M+  I +L + E  QR ++         K S S WGM+ AHLG+
Sbjct  442  WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT-------KTSLSYWGMVAAHLGL  494

Query  502  AMTVWGIAFSQNFSVERDVRMKVGENAQIGRYDFKFAGVTDENGPNYIGGKAQIDISKDG  561
            A+T+ GIAFSQN+SVERDVRM+ G++  I  Y F F  V D  GPNY GG A I+++++G
Sbjct  495  AVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  562  QPETSLFAEKRFYTVSRMSMTEAAIAGGLTRDLYVALGEKLEDNSWALRLYYKPFIRWIW  621
            +PE+ L AEKR+Y  SRM MTEAAI GGLTRDLY ALGE L++ +WA+RLYYKPF+RWIW
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

235) ccmF in NC_017452


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  549 bits (2073),  Expect = 2e-157, Method: Compositional matrix adjust.
 Identities = 370/600 (62%), Positives = 479/600 (80%), Gaps = 7/600 (1%)

Query  22   IFPLWGAEKGNVQLMALARPMTYGlfaslsiafaalfylfaVNDFSVQYIVNNSNTTLPI  81
            ++PLWG  +G+ ++MA A   +  LF  ++ AF  L   F VNDF+V Y+  NSNT LP+
Sbjct  22   VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   YYRLSAVWGSHEGSLLLWIWLLAVWSFAVALLSKHLPQEAVARVLGIMGIISVGFVLFVL  141
             YR++A WG+HEGSLLLW+ L++ W++AVA++S+++P + VARVL++MG++  GF+ F+L
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  FTSNPFTRTFPDFPVDGKELNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGKLD  201
            FTS PF+RT+P FPV+G++LNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++G+LD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  202  SAWARWSRPWTLAAWVFLTLGIVLGSWWAYYELGWGGWWFWDPVENSSFMPWLAGTALIH  261
            SA +R +RPWTLAAWVFLTLGIVLGS WAYYELGWGGWWFWDPVEN+SFMPWLAGTAL+H
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  262  SLSVTEKRGSFKAWTVllailafslcllGTFLVRSGILVSVHAFASDPTRGLYILAYLVV  321
            S++VTE+R++FKAWT+LL+I AFSLCLLGTFLVRSG+LVSVHAFASDP+RG++ILA++V+
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  322  VIGGSLALYAYKGSQIRSRDNAERYSRESmlllnnillmTALCVVFLGTLLPLVHKQLGL  381
            V GGSL L+A +G ++RSR N    SRES+LL NN+LLM+A+ VV+LGTLLPLVHKQLGL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  382  GSISIGAPFFDQMFLIIMTPFALLLGIGPLVKWRRDQFSAIRTPVVISVFVMLIAGFALP  441
            GSIS+G PFF+ MF  +M PFALLLG+GPLV+W RD+   IR  +  +V   L+ +  LP
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLP  441

Query  442  YFLQDKITVSSVLGSMMTVIIVLLVLYELQQRATHRESFFVGVRKLSRSHWGMMLAHLGV  501
             +L+DKI   + +G  M+  I +L + E  QR ++         K S S WGM+ AHLG+
Sbjct  442  WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT-------KTSLSYWGMVAAHLGL  494

Query  502  AMTVWGIAFSQNFSVERDVRMKVGENAQIGRYDFKFAGVTDENGPNYIGGKAQIDISKDG  561
            A+T+ GIAFSQN+SVERDVRM+ G++  I  Y F F  V D  GPNY GG A I+++++G
Sbjct  495  AVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  562  QPETSLFAEKRFYTVSRMSMTEAAIAGGLTRDLYVALGEKLEDNSWALRLYYKPFIRWIW  621
            +PE+ L AEKR+Y  SRM MTEAAI GGLTRDLY ALGE L++ +WA+RLYYKPF+RWIW
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

236) ccmF in NC_017451


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  549 bits (2071),  Expect = 3e-157, Method: Compositional matrix adjust.
 Identities = 387/620 (63%), Positives = 496/620 (80%), Gaps = 7/620 (1%)

Query  22   IFPLWGAEKGNAQLMALARPMTYGlfaslsiafaalfylfaVNDFSVQYIVNNSNTTLPI  81
            ++PLWG  +G+A++MA A   +  LF  ++ AF  L   F VNDF+V Y+  NSNT LP+
Sbjct  22   VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   YYRLSAVWGSHEGSLLLWIWLLAVWSFAVALLSKHLPQEAVARVLGIMGIISVGFVLFVL  141
             YR++A WG+HEGSLLLW+ L++ W++AVA++S+++P + VARVL++MG++  GF+ F+L
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  FTSNPFTRTFPDFPVDGKELNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGKLD  201
            FTS PF+RT+P FPV+G++LNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++G+LD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  202  SAWARWSRPWTLAAWVFLTLGIVLGSWWAYYELGWGGWWFWDPVENSSFMPWLAGTALIH  261
            SA +R +RPWTLAAWVFLTLGIVLGS WAYYELGWGGWWFWDPVEN+SFMPWLAGTAL+H
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  262  SLSVTEKRGSFKAWTVllailafslcllGTFLVRSGILVSVHAFASDPTRGLYILAYLVV  321
            S++VTE+R++FKAWT+LL+I AFSLCLLGTFLVRSG+LVSVHAFASDP+RG++ILA++V+
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  322  VIGGSLALYAYKGSQIRSRDNAERYSRESmlllnnillmTALCVVFLGTLLPLVHKQLGL  381
            V GGSL L+A +G ++RSR N    SRES+LL NN+LLM+A+ VV+LGTLLPLVHKQLGL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  382  GSISIGAPFFDQMFLIIMTPFALLLGIGPLVKWRRDQFSAIRTPVVICVFVMLIAGFALP  441
            GSIS+G PFF+ MF  +M PFALLLG+GPLV+W RD+   IR  +   V   L+ +  LP
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLP  441

Query  442  YFLQDKITVSSVLGSMMTVIIVLLVLYELQQRATHRESFFVGVRKLSRSHWGMMLAHLGV  501
             +L+DKI   + +G  M+  I +L + E  QR ++         K S S WGM+ AHLG+
Sbjct  442  WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT-------KTSLSYWGMVAAHLGL  494

Query  502  AMTVWGIAFSQNFSVERDVRMKVGENAQIGRYDFKFAGVTDENGPNYIGGKAQIDISKDG  561
            A+T+ GIAFSQN+SVERDVRM+ G++  I  Y F F  V D  GPNY GG A I+++++G
Sbjct  495  AVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  562  QPEASLFAEKRFYTVSRMSMTEAAIAGGLTRDLYVALGEKLEDNSWALRLYYKPFIRWIW  621
            +PEA L AEKR+Y  SRM MTEAAI GGLTRDLY ALGE L++ +WA+RLYYKPF+RWIW
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

Query  622  IGGLFMALGGLLCMFDRRYR  641
             GGL+MALGGLLC+ D RYR
Sbjct  615  AGGLLMALGGLLCLADPRYR  634

237) HIB_12520 in NC_016809


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  548 bits (2070),  Expect = 3e-157, Method: Compositional matrix adjust.
 Identities = 375/600 (63%), Positives = 481/600 (81%), Gaps = 7/600 (1%)

Query  22   IFPLWGAEKGNAQLMALARPMTYGlfaslsvafaalfylfavNDFSVQYIVNNSNTTLPI  81
            ++PLWG  +G+A++MA A   +  LF  ++ AF  L   F VNDF+V Y+  NSNT LP+
Sbjct  22   VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   YYRLSAVWGSHEGSLLLWIWLLAVWSFAVALLSKHLPQEAVARVLGIMGIISVGFVLFVL  141
             YR++A WG+HEGSLLLW+ L++ W++AVA++S+++P + VARVL++MG++  GF+ F+L
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  FTSNPFTRTFPDFPVDGKELNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGKLD  201
            FTS PF+RT+P FPV+G++LNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++G+LD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  202  SAWARWSRPWTLAAWVFLTLGIVLGSWWAYYELGWGGWWFWDPVENSSFMPWLAGTALIH  261
            SA +R +RPWTLAAWVFLTLGIVLGS WAYYELGWGGWWFWDPVEN+SFMPWLAGTAL+H
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  262  SLSVTEKRGSFKAWTVllailafslcllGTFLVRSGILVSVHAFASDPTRGLYILAYLVV  321
            S++VTE+R++FKAWT+LL+I AFSLCLLGTFLVRSG+LVSVHAFASDP+RG++ILA++V+
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  322  VIGGSLALYAYKGSQIRSRDNAERYSRESmlllnnillmTALCVVFLGTLLPLVHKQLGL  381
            V GGSL L+A +G ++RSR N    SRES+LL NN+LLM+A+ VV+LGTLLPLVHKQLGL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  382  GSISIGAPFFDQMFLIIMTPFALLLGIGPLVKWRRDQFSAIRTPVVICVFVMLIAGFALP  441
            GSIS+G PFF+ MF  +M PFALLLG+GPLV+W RD+   IR  +   V   L+ +  LP
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLP  441

Query  442  YFLQDKITVSSVLGSMMTVIIALLALYELQQRATHRESFFVGVRKLSRSHWGMMLAHLGV  501
             +L+DKI   + +G  M+  IA+LA+ E  QR ++         K S S WGM+ AHLG+
Sbjct  442  WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT-------KTSLSYWGMVAAHLGL  494

Query  502  AMTVWGIAFSQNFSVERDVRMKVGESAQIGRYDFKFTGVTDENGPNYIGGKAQIDISKDG  561
            A+T+ GIAFSQN+SVERDVRM+ G+S  I  Y F F  V D  GPNY GG A I+++++G
Sbjct  495  AVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  562  QPEASLFAEKRFYTVSRMSMTEAAIAGGLTRDLYVALGEKLEDNSWALRLYYKPFIRWIW  621
            +PEA L AEKR+Y  SRM MTEAAI GGLTRDLY ALGE L++ +WA+RLYYKPF+RWIW
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

238) PBPRA0952 in NC_006370


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  548 bits (2067),  Expect = 6e-157, Method: Compositional matrix adjust.
 Identities = 391/648 (61%), Positives = 514/648 (80%), Gaps = 7/648 (1%)

Query  1    MIPEIGQFALIVALGLSALASIYPLYGASIGNQPMMRMARPLSYGAFGMLVLSFFALCWS  60
            M+PE G+  L +ALG++ L S+YPL G + G+  MM  A  ++   F  +  +FF L  +
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FYTNDFTVTYVASNSNSLLPWYYRVTAVWGGHEGSLLLWVLIQAGWAAAVARFSRDMPLE  120
            F  NDFTV+YVA+NSN+ LP  YRV+A WG+HEGSLLLWVL+ +GW+ AVA FSR++P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  SVARVLAVMGMISVGFLLFIIVTSNPFLRLLPYFPVDGRDLNPLLQDPGLIIHPPMLYMG  180
             VARVLAVMGM+  GFL FI+ TS PF R LP FPV+GRDLNPLLQDPGLI+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFSFAIASLMTGRLDTAWARWSRPWTIAAWSFLTVGIALGSWWAYYELGWGGWW  240
            YVGFSVAF+FAIA+L++GRLD+A +R +RPWT+AAW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVllaisafslsllGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTAL+HS+AVTE+R+ FKAWT+LL+I AFSL LLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILGFLIVVIGGSLLLYALRGGKIKSRGSYSLFSREnlllsnnilli  360
            SVHAFASDPARGMFIL+F+++V GGSLLL+A+RG +++SR + +L SRE+LLL+NN+LL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aallvvligtllplvHKQIGLGSVSIGVPFFNTLFTWLMIPFAFLLGIGPLVRWKRDEVA  420
            AA+LVVL+GTLLPLVHKQ+GLGS+S+G PFFNT+FTWLM+PFA+LLG+GPLVRW RD   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NVRKPMLISGAITLPLAFACIAIFTDSLEPMAVLGLTMSIWIVTMHGFELYQRATHRHTF  480
            N+RK +  +   TL L+     ++ D + +M+ +G++M+ WI  +   E  QR ++    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSR----  476

Query  481  MKGVGKLGRSHWAMILGHMGLAVSVIGITLVSNYDLERDVRLAPGETTQVQGYDFYFDGL  540
                 K + S W+M+ +H+GLAV++ GI++  NY +ERDVR+ +G++  +++Y F F  +
Sbjct  477  ---GTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  RDADGPNYDGYIADFTVTRNGKSVTTLHAEKRFYSTTGSMMTEAAIDSGVTRDLYVAMGE  600
            RD  GPNY G +A + VTR+G + + LHAEKR+Y+T+  +MTEAAID+G+TRDLY A+GE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  KLDDHAWAVRIYYKPFINWIWFgaalmglggaiaiSDKRYRFRKKASE  648
             LD+ AWAVR+YYKPF+ WIW G+ LM+LGG + ++D RYR RK  +E
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPE  641

239) ccmF2 in NC_017910


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  547 bits (2063),  Expect = 1e-156, Method: Compositional matrix adjust.
 Identities = 451/641 (71%), Positives = 552/641 (87%), Gaps = 7/641 (1%)

Query  1    MIPELGNYllclglsvalllAVYPLWGAWRGQarlmalarplalvqfvavllaflilaya  60
            M+PE G+ LLCL+L+VALLL+VYPLWG  RG+AR+MA A  +A + F+ V  AF++L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   fITCDFSVRYVADNANSALPVWYRIAATWGSHEGSLLLWVLLMSGWTAAVALFSRQMPLD  120
            F+  DF+V YVA+N+N+ LPVWYR+AATWG+HEGSLLLWVLLMSGWT AVA+FSRQ+P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLAVMGMISAGFLLFILFTSNPFTRTLPGYPADGRDLNPLLQDVGMIFHPPILYMG  180
             VARVLAVMGM+ AGFL FILFTS PF+RTLP++P +GRDLNPLLQD G+IFHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLLAGRLDTAWARWSRPWTQAAWLFLTLGIVLGSAWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LL+GRLD+A +R +RPWT AAW+FLTLGIVLGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLMPWLVGTALMHSLAVTEKRGSFRAWTALLAIIAFSLCLLGTFLVRSGVLV  300
            FWDPVENAS+MPWL GTAL+HS+AVTE+R++F+AWT LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFilallviviggslllyalrggavrgrvgHQLWSRESFLLGNNIllv  360
            SVHAFASDPARGMFILA++V+V GGSLLL+A+RG  VR+RV + LWSRES+LLGNN+LL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aamlvvllgtllplvHKEMGLGSISVGEPFFNTLFTVLMVPFALLLGVGPLIRWRRDDIg  420
            AAMLVVLLGTLLPLVHK++GLGSISVGEPFFNT+FT LMVPFALLLGVGPL+RW RD   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  rqlrrlglalavslvlalvlPWWLGDRIVAITVTGlmmalwvlvlalIELHERATHRHGF  480
               + L  A+  +LVL+++LPW L D+I+A+T  G+ MA W+ VLA+ E  +R ++    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT--  478

Query  481  WRGLLHQSRSQWGMVLGHIGVAVTVIGIAFSTQYSVERDVRMKTGDTLDIHQYHFEFQGV  540
                   S S WGMV +H+G+AVT+ GIAFS +YSVERDVRM++GD++ IH+Y+F F+ V
Sbjct  479  -----KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  RDIVGPNWSGGMGVFSVSRNGKPETTLYAEKRFYSASQMMMTEAAIDGGLTRDLYAALGE  600
            RDI GPN  GG+++++V+R+G PE+ L AEKR+Y++S+M+MTEAAIDGGLTRDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  ELEDGSWAVRLYYKPFVRWIWYGGVLMALGGLCCMLDPRYR  641
            EL++G+WAVRLYYKPFVRWIW GG+LMALGGL C+ DPRYR
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

240) O3Y_09915 in NC_016944


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  547 bits (2063),  Expect = 1e-156, Method: Compositional matrix adjust.
 Identities = 386/625 (62%), Positives = 500/625 (80%), Gaps = 8/625 (1%)

Query  27   GASRNNTLLMNTARPLAWGMFFLLSISFAVLLWAFYINDFTVQYVASNSNSELPWYYRLT  86
            G +R ++ +M +A  +AW +F+ ++ +F VL+ AF +NDFTV YVA+NSN++LP  YR++
Sbjct  27   GVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVA  86

Query  87   AVWGAHEGSLLLWVLIQAAWTVAVASFSRGMPQESVARVLAVMGMITVGFLLFIILTSNP  146
            A WGAHEGSLLLWVL+ ++WT+AVA FSR +P + VARVLAVMGM+  GFL FI++TS P
Sbjct  87   ATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGP  146

Query  147  FLRTLPYFPIDGRDLNPLLQDPGLIIHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWAR  206
            F RTLP FP++GRDLNPLLQDPGLI+HPP+LYMGYVGFSVAF+FAIA+L++GRLD+A +R
Sbjct  147  FARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTR  206

Query  207  WSRPWTTAAWLFLTLGIVLGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAVT  266
             +RPWT AAW+FLTLGIVLGS WAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS+AVT
Sbjct  207  FARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVT  266

Query  267  EKRGTFKAWTVllaisafslsllGTFLVRSGILVSVHAFASDPARGMFILGFLIAVIGGS  326
            E+R+ FKAWT+LL+I AFSL LLGTFLVRSG+LVSVHAFASDPARGMFIL+F++ V GGS
Sbjct  267  EQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGS  326

Query  327  LLLFAIKGASVRVRGNFELVSRENSLLVNNVLLMTALAVVLIGTLLPLVHKQLGLGSVSI  386
            LLLFA++G  VR R N  L SRE+ LL NNVLLM+A+ VVL+GTLLPLVHKQLGLGS+S+
Sbjct  327  LLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISV  386

Query  387  GAPFFNMLFAWLMIPFAFFMGIGPLIRWKRDQISTLFKPMLITamaslvlaalmmwlNAP  446
            G PFFN +F+WLM+PFA+++G+GPL+RW RD+   + K +  + +++LVL+ L+ WL   
Sbjct  387  GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLED  446

Query  447  TFSPMAYLGWVMAWWILLLHAYELHTRATHRHRFIVGVKKLQRSHWAMMLGHVGLAVSII  506
             + +M+ +G  MA WI +L   E   R ++         K   S W+M+ +H+GLAV+I 
Sbjct  447  KIIAMTAVGMAMACWIAVLAVAEAVQRVSR-------GTKTSLSYWGMVAAHLGLAVTIT  499

Query  507  GIAMVQNYSIERDVRLAPGDNFQLNEYNFYFQGVRDKDGPNYDGYIADFEITSQGQYVNT  566
            GIA  QNYS+ERDVR+ +GD+  +++Y F F+ VRD  GPNY G +A + +T +G+    
Sbjct  500  GIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAV  559

Query  567  LHAEKRFYRTAKSMMTEAAIDRGITRDLYIAMGERLDDNRSWAVRIYYKPYVRWiwaggl  626
            LHAEKR+Y T++ +MTEAAID G+TRDLY A+GE LD+  +WAVR+YYKP+VRWIWAGGL
Sbjct  560  LHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG-AWAVRLYYKPFVRWIWAGGL  618

Query  627  lmaiggalaiSDKRYRFRKNAHQEA  651
            LMA+GG L ++D RYR RK   + +
Sbjct  619  LMALGGLLCLADPRYRRRKPLPEAG  643

241) ccmF in NC_012578


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  547 bits (2063),  Expect = 1e-156, Method: Compositional matrix adjust.
 Identities = 386/625 (62%), Positives = 500/625 (80%), Gaps = 8/625 (1%)

Query  27   GASRNNTLLMNTARPLAWGMFFLLSISFAVLLWAFYINDFTVQYVASNSNSELPWYYRLT  86
            G +R ++ +M +A  +AW +F+ ++ +F VL+ AF +NDFTV YVA+NSN++LP  YR++
Sbjct  27   GVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVA  86

Query  87   AVWGAHEGSLLLWVLIQAAWTVAVASFSRGMPQESVARVLAVMGMITVGFLLFIILTSNP  146
            A WGAHEGSLLLWVL+ ++WT+AVA FSR +P + VARVLAVMGM+  GFL FI++TS P
Sbjct  87   ATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGP  146

Query  147  FLRTLPYFPIDGRDLNPLLQDPGLIIHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWAR  206
            F RTLP FP++GRDLNPLLQDPGLI+HPP+LYMGYVGFSVAF+FAIA+L++GRLD+A +R
Sbjct  147  FARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTR  206

Query  207  WSRPWTTAAWLFLTLGIVLGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAVT  266
             +RPWT AAW+FLTLGIVLGS WAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS+AVT
Sbjct  207  FARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVT  266

Query  267  EKRGTFKAWTVllaisafslsllGTFLVRSGILVSVHAFASDPARGMFILGFLIAVIGGS  326
            E+R+ FKAWT+LL+I AFSL LLGTFLVRSG+LVSVHAFASDPARGMFIL+F++ V GGS
Sbjct  267  EQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGS  326

Query  327  LLLFAIKGASVRVRGNFELVSRENSLLVNNVLLMTALAVVLIGTLLPLVHKQLGLGSVSI  386
            LLLFA++G  VR R N  L SRE+ LL NNVLLM+A+ VVL+GTLLPLVHKQLGLGS+S+
Sbjct  327  LLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISV  386

Query  387  GAPFFNMLFAWLMIPFAFFMGIGPLIRWKRDQISTLFKPMLITamaslvlaalmmwlNAP  446
            G PFFN +F+WLM+PFA+++G+GPL+RW RD+   + K +  + +++LVL+ L+ WL   
Sbjct  387  GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLED  446

Query  447  TFSPMAYLGWVMAWWILLLHAYELHTRATHRHRFIVGVKKLQRSHWAMMLGHVGLAVSII  506
             + +M+ +G  MA WI +L   E   R ++         K   S W+M+ +H+GLAV+I 
Sbjct  447  KIIAMTAVGMAMACWIAVLAVAEAVQRVSR-------GTKTSLSYWGMVAAHLGLAVTIT  499

Query  507  GIAMVQNYSIERDVRLAPGDNFQLNEYNFYFQGVRDKDGPNYDGYIADFEITSQGQYVNT  566
            GIA  QNYS+ERDVR+ +GD+  +++Y F F+ VRD  GPNY G +A + +T +G+    
Sbjct  500  GIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAV  559

Query  567  LHAEKRFYRTAKSMMTEAAIDRGITRDLYIAMGERLDDNRSWAVRIYYKPYVRWiwaggl  626
            LHAEKR+Y T++ +MTEAAID G+TRDLY A+GE LD+  +WAVR+YYKP+VRWIWAGGL
Sbjct  560  LHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG-AWAVRLYYKPFVRWIWAGGL  618

Query  627  lmaiggalaiSDKRYRFRKNAHQEA  651
            LMA+GG L ++D RYR RK   + +
Sbjct  619  LMALGGLLCLADPRYRRRKPLPEAG  643

242) VCD_002314 in NC_012668


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  547 bits (2063),  Expect = 1e-156, Method: Compositional matrix adjust.
 Identities = 386/625 (62%), Positives = 500/625 (80%), Gaps = 8/625 (1%)

Query  27   GASRNNTLLMNTARPLAWGMFFLLSISFAVLLWAFYINDFTVQYVASNSNSELPWYYRLT  86
            G +R ++ +M +A  +AW +F+ ++ +F VL+ AF +NDFTV YVA+NSN++LP  YR++
Sbjct  27   GVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVA  86

Query  87   AVWGAHEGSLLLWVLIQAAWTVAVASFSRGMPQESVARVLAVMGMITVGFLLFIILTSNP  146
            A WGAHEGSLLLWVL+ ++WT+AVA FSR +P + VARVLAVMGM+  GFL FI++TS P
Sbjct  87   ATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGP  146

Query  147  FLRTLPYFPIDGRDLNPLLQDPGLIIHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWAR  206
            F RTLP FP++GRDLNPLLQDPGLI+HPP+LYMGYVGFSVAF+FAIA+L++GRLD+A +R
Sbjct  147  FARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTR  206

Query  207  WSRPWTTAAWLFLTLGIVLGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAVT  266
             +RPWT AAW+FLTLGIVLGS WAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS+AVT
Sbjct  207  FARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVT  266

Query  267  EKRGTFKAWTVllaisafslsllGTFLVRSGILVSVHAFASDPARGMFILGFLIAVIGGS  326
            E+R+ FKAWT+LL+I AFSL LLGTFLVRSG+LVSVHAFASDPARGMFIL+F++ V GGS
Sbjct  267  EQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGS  326

Query  327  LLLFAIKGASVRVRGNFELVSRENSLLVNNVLLMTALAVVLIGTLLPLVHKQLGLGSVSI  386
            LLLFA++G  VR R N  L SRE+ LL NNVLLM+A+ VVL+GTLLPLVHKQLGLGS+S+
Sbjct  327  LLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISV  386

Query  387  GAPFFNMLFAWLMIPFAFFMGIGPLIRWKRDQISTLFKPMLITamaslvlaalmmwlNAP  446
            G PFFN +F+WLM+PFA+++G+GPL+RW RD+   + K +  + +++LVL+ L+ WL   
Sbjct  387  GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLED  446

Query  447  TFSPMAYLGWVMAWWILLLHAYELHTRATHRHRFIVGVKKLQRSHWAMMLGHVGLAVSII  506
             + +M+ +G  MA WI +L   E   R ++         K   S W+M+ +H+GLAV+I 
Sbjct  447  KIIAMTAVGMAMACWIAVLAVAEAVQRVSR-------GTKTSLSYWGMVAAHLGLAVTIT  499

Query  507  GIAMVQNYSIERDVRLAPGDNFQLNEYNFYFQGVRDKDGPNYDGYIADFEITSQGQYVNT  566
            GIA  QNYS+ERDVR+ +GD+  +++Y F F+ VRD  GPNY G +A + +T +G+    
Sbjct  500  GIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAV  559

Query  567  LHAEKRFYRTAKSMMTEAAIDRGITRDLYIAMGERLDDNRSWAVRIYYKPYVRWiwaggl  626
            LHAEKR+Y T++ +MTEAAID G+TRDLY A+GE LD+  +WAVR+YYKP+VRWIWAGGL
Sbjct  560  LHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG-AWAVRLYYKPFVRWIWAGGL  618

Query  627  lmaiggalaiSDKRYRFRKNAHQEA  651
            LMA+GG L ++D RYR RK   + +
Sbjct  619  LMALGGLLCLADPRYRRRKPLPEAG  643

243) ccmF in NC_016445


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  547 bits (2063),  Expect = 1e-156, Method: Compositional matrix adjust.
 Identities = 386/625 (62%), Positives = 500/625 (80%), Gaps = 8/625 (1%)

Query  27   GASRNNTLLMNTARPLAWGMFFLLSISFAVLLWAFYINDFTVQYVASNSNSELPWYYRLT  86
            G +R ++ +M +A  +AW +F+ ++ +F VL+ AF +NDFTV YVA+NSN++LP  YR++
Sbjct  27   GVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVA  86

Query  87   AVWGAHEGSLLLWVLIQAAWTVAVASFSRGMPQESVARVLAVMGMITVGFLLFIILTSNP  146
            A WGAHEGSLLLWVL+ ++WT+AVA FSR +P + VARVLAVMGM+  GFL FI++TS P
Sbjct  87   ATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGP  146

Query  147  FLRTLPYFPIDGRDLNPLLQDPGLIIHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWAR  206
            F RTLP FP++GRDLNPLLQDPGLI+HPP+LYMGYVGFSVAF+FAIA+L++GRLD+A +R
Sbjct  147  FARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTR  206

Query  207  WSRPWTTAAWLFLTLGIVLGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAVT  266
             +RPWT AAW+FLTLGIVLGS WAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS+AVT
Sbjct  207  FARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVT  266

Query  267  EKRGTFKAWTVllaisafslsllGTFLVRSGILVSVHAFASDPARGMFILGFLIAVIGGS  326
            E+R+ FKAWT+LL+I AFSL LLGTFLVRSG+LVSVHAFASDPARGMFIL+F++ V GGS
Sbjct  267  EQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGS  326

Query  327  LLLFAIKGASVRVRGNFELVSRENSLLVNNVLLMTALAVVLIGTLLPLVHKQLGLGSVSI  386
            LLLFA++G  VR R N  L SRE+ LL NNVLLM+A+ VVL+GTLLPLVHKQLGLGS+S+
Sbjct  327  LLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISV  386

Query  387  GAPFFNMLFAWLMIPFAFFMGIGPLIRWKRDQISTLFKPMLITamaslvlaalmmwlNAP  446
            G PFFN +F+WLM+PFA+++G+GPL+RW RD+   + K +  + +++LVL+ L+ WL   
Sbjct  387  GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLED  446

Query  447  TFSPMAYLGWVMAWWILLLHAYELHTRATHRHRFIVGVKKLQRSHWAMMLGHVGLAVSII  506
             + +M+ +G  MA WI +L   E   R ++         K   S W+M+ +H+GLAV+I 
Sbjct  447  KIIAMTAVGMAMACWIAVLAVAEAVQRVSR-------GTKTSLSYWGMVAAHLGLAVTIT  499

Query  507  GIAMVQNYSIERDVRLAPGDNFQLNEYNFYFQGVRDKDGPNYDGYIADFEITSQGQYVNT  566
            GIA  QNYS+ERDVR+ +GD+  +++Y F F+ VRD  GPNY G +A + +T +G+    
Sbjct  500  GIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAV  559

Query  567  LHAEKRFYRTAKSMMTEAAIDRGITRDLYIAMGERLDDNRSWAVRIYYKPYVRWiwaggl  626
            LHAEKR+Y T++ +MTEAAID G+TRDLY A+GE LD+  +WAVR+YYKP+VRWIWAGGL
Sbjct  560  LHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG-AWAVRLYYKPFVRWIWAGGL  618

Query  627  lmaiggalaiSDKRYRFRKNAHQEA  651
            LMA+GG L ++D RYR RK   + +
Sbjct  619  LMALGGLLCLADPRYRRRKPLPEAG  643

244) VC2052 in NC_002505


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  547 bits (2063),  Expect = 1e-156, Method: Compositional matrix adjust.
 Identities = 386/625 (62%), Positives = 500/625 (80%), Gaps = 8/625 (1%)

Query  27   GASRNNTLLMNTARPLAWGMFFLLSISFAVLLWAFYINDFTVQYVASNSNSELPWYYRLT  86
            G +R ++ +M +A  +AW +F+ ++ +F VL+ AF +NDFTV YVA+NSN++LP  YR++
Sbjct  27   GVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVA  86

Query  87   AVWGAHEGSLLLWVLIQAAWTVAVASFSRGMPQESVARVLAVMGMITVGFLLFIILTSNP  146
            A WGAHEGSLLLWVL+ ++WT+AVA FSR +P + VARVLAVMGM+  GFL FI++TS P
Sbjct  87   ATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGP  146

Query  147  FLRTLPYFPIDGRDLNPLLQDPGLIIHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWAR  206
            F RTLP FP++GRDLNPLLQDPGLI+HPP+LYMGYVGFSVAF+FAIA+L++GRLD+A +R
Sbjct  147  FARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTR  206

Query  207  WSRPWTTAAWLFLTLGIVLGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAVT  266
             +RPWT AAW+FLTLGIVLGS WAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS+AVT
Sbjct  207  FARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVT  266

Query  267  EKRGTFKAWTVllaisafslsllGTFLVRSGILVSVHAFASDPARGMFILGFLIAVIGGS  326
            E+R+ FKAWT+LL+I AFSL LLGTFLVRSG+LVSVHAFASDPARGMFIL+F++ V GGS
Sbjct  267  EQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGS  326

Query  327  LLLFAIKGASVRVRGNFELVSRENSLLVNNVLLMTALAVVLIGTLLPLVHKQLGLGSVSI  386
            LLLFA++G  VR R N  L SRE+ LL NNVLLM+A+ VVL+GTLLPLVHKQLGLGS+S+
Sbjct  327  LLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISV  386

Query  387  GAPFFNMLFAWLMIPFAFFMGIGPLIRWKRDQISTLFKPMLITamaslvlaalmmwlNAP  446
            G PFFN +F+WLM+PFA+++G+GPL+RW RD+   + K +  + +++LVL+ L+ WL   
Sbjct  387  GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLED  446

Query  447  TFSPMAYLGWVMAWWILLLHAYELHTRATHRHRFIVGVKKLQRSHWAMMLGHVGLAVSII  506
             + +M+ +G  MA WI +L   E   R ++         K   S W+M+ +H+GLAV+I 
Sbjct  447  KIIAMTAVGMAMACWIAVLAVAEAVQRVSR-------GTKTSLSYWGMVAAHLGLAVTIT  499

Query  507  GIAMVQNYSIERDVRLAPGDNFQLNEYNFYFQGVRDKDGPNYDGYIADFEITSQGQYVNT  566
            GIA  QNYS+ERDVR+ +GD+  +++Y F F+ VRD  GPNY G +A + +T +G+    
Sbjct  500  GIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAV  559

Query  567  LHAEKRFYRTAKSMMTEAAIDRGITRDLYIAMGERLDDNRSWAVRIYYKPYVRWiwaggl  626
            LHAEKR+Y T++ +MTEAAID G+TRDLY A+GE LD+  +WAVR+YYKP+VRWIWAGGL
Sbjct  560  LHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG-AWAVRLYYKPFVRWIWAGGL  618

Query  627  lmaiggalaiSDKRYRFRKNAHQEA  651
            LMA+GG L ++D RYR RK   + +
Sbjct  619  LMALGGLLCLADPRYRRRKPLPEAG  643

245) ccmF in NC_012582


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  547 bits (2063),  Expect = 1e-156, Method: Compositional matrix adjust.
 Identities = 386/625 (62%), Positives = 500/625 (80%), Gaps = 8/625 (1%)

Query  27   GASRNNTLLMNTARPLAWGMFFLLSISFAVLLWAFYINDFTVQYVASNSNSELPWYYRLT  86
            G +R ++ +M +A  +AW +F+ ++ +F VL+ AF +NDFTV YVA+NSN++LP  YR++
Sbjct  27   GVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVA  86

Query  87   AVWGAHEGSLLLWVLIQAAWTVAVASFSRGMPQESVARVLAVMGMITVGFLLFIILTSNP  146
            A WGAHEGSLLLWVL+ ++WT+AVA FSR +P + VARVLAVMGM+  GFL FI++TS P
Sbjct  87   ATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGP  146

Query  147  FLRTLPYFPIDGRDLNPLLQDPGLIIHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWAR  206
            F RTLP FP++GRDLNPLLQDPGLI+HPP+LYMGYVGFSVAF+FAIA+L++GRLD+A +R
Sbjct  147  FARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTR  206

Query  207  WSRPWTTAAWLFLTLGIVLGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAVT  266
             +RPWT AAW+FLTLGIVLGS WAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS+AVT
Sbjct  207  FARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVT  266

Query  267  EKRGTFKAWTVllaisafslsllGTFLVRSGILVSVHAFASDPARGMFILGFLIAVIGGS  326
            E+R+ FKAWT+LL+I AFSL LLGTFLVRSG+LVSVHAFASDPARGMFIL+F++ V GGS
Sbjct  267  EQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGS  326

Query  327  LLLFAIKGASVRVRGNFELVSRENSLLVNNVLLMTALAVVLIGTLLPLVHKQLGLGSVSI  386
            LLLFA++G  VR R N  L SRE+ LL NNVLLM+A+ VVL+GTLLPLVHKQLGLGS+S+
Sbjct  327  LLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISV  386

Query  387  GAPFFNMLFAWLMIPFAFFMGIGPLIRWKRDQISTLFKPMLITamaslvlaalmmwlNAP  446
            G PFFN +F+WLM+PFA+++G+GPL+RW RD+   + K +  + +++LVL+ L+ WL   
Sbjct  387  GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLED  446

Query  447  TFSPMAYLGWVMAWWILLLHAYELHTRATHRHRFIVGVKKLQRSHWAMMLGHVGLAVSII  506
             + +M+ +G  MA WI +L   E   R ++         K   S W+M+ +H+GLAV+I 
Sbjct  447  KIIAMTAVGMAMACWIAVLAVAEAVQRVSR-------GTKTSLSYWGMVAAHLGLAVTIT  499

Query  507  GIAMVQNYSIERDVRLAPGDNFQLNEYNFYFQGVRDKDGPNYDGYIADFEITSQGQYVNT  566
            GIA  QNYS+ERDVR+ +GD+  +++Y F F+ VRD  GPNY G +A + +T +G+    
Sbjct  500  GIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAV  559

Query  567  LHAEKRFYRTAKSMMTEAAIDRGITRDLYIAMGERLDDNRSWAVRIYYKPYVRWiwaggl  626
            LHAEKR+Y T++ +MTEAAID G+TRDLY A+GE LD+  +WAVR+YYKP+VRWIWAGGL
Sbjct  560  LHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG-AWAVRLYYKPFVRWIWAGGL  618

Query  627  lmaiggalaiSDKRYRFRKNAHQEA  651
            LMA+GG L ++D RYR RK   + +
Sbjct  619  LMALGGLLCLADPRYRRRKPLPEAG  643

246) ccmF in NC_009457


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  547 bits (2063),  Expect = 1e-156, Method: Compositional matrix adjust.
 Identities = 386/625 (62%), Positives = 500/625 (80%), Gaps = 8/625 (1%)

Query  27   GASRNNTLLMNTARPLAWGMFFLLSISFAVLLWAFYINDFTVQYVASNSNSELPWYYRLT  86
            G +R ++ +M +A  +AW +F+ ++ +F VL+ AF +NDFTV YVA+NSN++LP  YR++
Sbjct  27   GVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVA  86

Query  87   AVWGAHEGSLLLWVLIQAAWTVAVASFSRGMPQESVARVLAVMGMITVGFLLFIILTSNP  146
            A WGAHEGSLLLWVL+ ++WT+AVA FSR +P + VARVLAVMGM+  GFL FI++TS P
Sbjct  87   ATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGP  146

Query  147  FLRTLPYFPIDGRDLNPLLQDPGLIIHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWAR  206
            F RTLP FP++GRDLNPLLQDPGLI+HPP+LYMGYVGFSVAF+FAIA+L++GRLD+A +R
Sbjct  147  FARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTR  206

Query  207  WSRPWTTAAWLFLTLGIVLGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAVT  266
             +RPWT AAW+FLTLGIVLGS WAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS+AVT
Sbjct  207  FARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVT  266

Query  267  EKRGTFKAWTVllaisafslsllGTFLVRSGILVSVHAFASDPARGMFILGFLIAVIGGS  326
            E+R+ FKAWT+LL+I AFSL LLGTFLVRSG+LVSVHAFASDPARGMFIL+F++ V GGS
Sbjct  267  EQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGS  326

Query  327  LLLFAIKGASVRVRGNFELVSRENSLLVNNVLLMTALAVVLIGTLLPLVHKQLGLGSVSI  386
            LLLFA++G  VR R N  L SRE+ LL NNVLLM+A+ VVL+GTLLPLVHKQLGLGS+S+
Sbjct  327  LLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISV  386

Query  387  GAPFFNMLFAWLMIPFAFFMGIGPLIRWKRDQISTLFKPMLITamaslvlaalmmwlNAP  446
            G PFFN +F+WLM+PFA+++G+GPL+RW RD+   + K +  + +++LVL+ L+ WL   
Sbjct  387  GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLED  446

Query  447  TFSPMAYLGWVMAWWILLLHAYELHTRATHRHRFIVGVKKLQRSHWAMMLGHVGLAVSII  506
             + +M+ +G  MA WI +L   E   R ++         K   S W+M+ +H+GLAV+I 
Sbjct  447  KIIAMTAVGMAMACWIAVLAVAEAVQRVSR-------GTKTSLSYWGMVAAHLGLAVTIT  499

Query  507  GIAMVQNYSIERDVRLAPGDNFQLNEYNFYFQGVRDKDGPNYDGYIADFEITSQGQYVNT  566
            GIA  QNYS+ERDVR+ +GD+  +++Y F F+ VRD  GPNY G +A + +T +G+    
Sbjct  500  GIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAV  559

Query  567  LHAEKRFYRTAKSMMTEAAIDRGITRDLYIAMGERLDDNRSWAVRIYYKPYVRWiwaggl  626
            LHAEKR+Y T++ +MTEAAID G+TRDLY A+GE LD+  +WAVR+YYKP+VRWIWAGGL
Sbjct  560  LHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG-AWAVRLYYKPFVRWIWAGGL  618

Query  627  lmaiggalaiSDKRYRFRKNAHQEA  651
            LMA+GG L ++D RYR RK   + +
Sbjct  619  LMALGGLLCLADPRYRRRKPLPEAG  643

247) HIBPF11730 in NC_014920


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  547 bits (2065),  Expect = 9e-157, Method: Compositional matrix adjust.
 Identities = 372/600 (62%), Positives = 479/600 (80%), Gaps = 7/600 (1%)

Query  22   IFPLWGAEKGNAQLMALARPMTYGlfaslsiafaalfylfaVNDFSVQYIVNNSNTTLPI  81
            ++PLWG  +G+A++MA A   +  LF  ++ AF  L   F VNDF+V Y+  NSNT LP+
Sbjct  22   VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   YYRLSAVWGSHEGSLLLWIWLLAVWSFAVALLSKHLPQEAVARVLGIMGIISVGFVLFVL  141
             YR++A WG+HEGSLLLW+ L++ W++AVA++S+++P + VARVL++MG++  GF+ F+L
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  FTSNPFTRTFPDFPVDGKELNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGKLD  201
            FTS PF+RT+P FPV+G++LNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++G+LD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  202  SAWARWSRPWTLAAWVFLTLGIVLGSWWAYYELGWGGWWFWDPVENSSFMPWLAGTALIH  261
            SA +R +RPWTLAAWVFLTLGIVLGS WAYYELGWGGWWFWDPVEN+SFMPWLAGTAL+H
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  262  SLSVTEKRGSFKAWTVllailafslcllGTFLVRSGILVSVHAFASDPTRGLYILAYLVV  321
            S++VTE+R++FKAWT+LL+I AFSLCLLGTFLVRSG+LVSVHAFASDP+RG++ILA++V+
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  322  VIGGSLALYAYKGSQIRSRDNAERYSRESmlllnnillmTALCVVFLGTLLPLVHKQLGL  381
            V GGSL L+A +G ++RSR N    SRES+LL NN+LLM+A+ VV+LGTLLPLVHKQLGL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  382  GSISIGAPFFDQMFLIIMTPFALLLGIGPLVKWRRDQFSAIRTPVVICVFVMLIAGFALP  441
            GSIS+G PFF+ MF  +M PFALLLG+GPLV+W RD+   IR  +   V   L+ +  LP
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLP  441

Query  442  YFLQDKITVSSVLGSMMTVIIVLLVLYELQQRATHRESFFVGVRKLSRSHWGMMLAHLGV  501
             +L+DKI   + +G  M+  I +L + E  QR ++         K S S WGM+ AHLG+
Sbjct  442  WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT-------KTSLSYWGMVAAHLGL  494

Query  502  AMTVWGIAFSQNFSVERDVRMKVGENAQIGRYDFKFVGVTDENGPNYIGGKAQIDISKDG  561
            A+T+ GIAFSQN+SVERDVRM+ G++  I  Y F F  V D  GPNY GG A I+++++G
Sbjct  495  AVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  562  QPEASLFAEKRFYTVSRMSMTEAAIAGGLTRDLYVALGEKLEDNSWALRLYYKPFIRWIW  621
            +PEA L AEKR+Y  SRM MTEAAI GGLTRDLY ALGE L++ +WA+RLYYKPF+RWIW
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

248) ccmF in NC_009348


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  546 bits (2062),  Expect = 2e-156, Method: Compositional matrix adjust.
 Identities = 399/641 (63%), Positives = 525/641 (82%), Gaps = 7/641 (1%)

Query  1    MIPELGQFSLILAFATAILLGVYPLLGAQWGRLGMMSTARPlayaqflllllsflcltwa  60
            M+PE G+  L LA++ A+LL+VYPL G  +G   MM++A  +A   F+ +  +F+ L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   fIDHDFTVQYVATNSNTLLPLAYRISAVWGAHEGSLLLWVLTLAGWTAAVALFSRSLPLD  120
            F+ +DFTV YVA NSNT LP+ YR++A WGAHEGSLLLWVL ++GWT AVA+FSR +P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLGVLGLISVGFTAFVLFTSDPFTRTLPYFPVDGRDLNPLLQDPGLIFHPPMLYMG  180
             VARVL+V+G++  GF AF+LFTS+PF+RTLP FPV+GRDLNPLLQDPGLIFHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMTGRLDATWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLD++ +R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVSEKRATFKAWTVllalsafslsllGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AV+E+RA FKAWT+LL++ AFSL LLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPTRGLFILGFLLAVIGSSLLLFAFKGSQVKSHGKHELWSRETLLLGNNIMlv  360
            SVHAFASDP+RG+FIL+F++ V G+SLLLFA +G +V+S+ ++ LWSRE+LLLGNN++L+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aglltvllgtllplvHKELGLGSISIGTPFFNHIYSWLIIPFALLMGVGPLFRWRRQGLG  420
            A++L VLLGTLLPLVHK+LGLGSIS+G PFFN +++WL++PFALL+GVGPL RW R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  ELKGKvilalvlslvsaillplwlaEEFKPWAAVGIGLGTWIIITSIQETWVRATHKHSF  480
            +++  +  A+V +LV ++LLP  L + + + +AVG++++ WI + ++ E+  R ++    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT--  478

Query  481  ATGVRKLGNSHWAMILGHVGLAVSIIGIACTQNYSIEKDLRMQAGDRVQFADYEFVFTGI  540
                 K + S W+M+ +H+GLAV+I GIA +QNYS+E+D+RM+AGD V + DY F F  +
Sbjct  479  -----KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  REKNGPNYDGFKGVLEVHKDGKQVALLKPEKRMYTVSRMPMTEAAIDAGFTRDLYAALGE  600
            R+  GPNY G  +++ V ++G   A+L +EKR+Y  SRM MTEAAID+G+TRDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  QLDNGAWAVRIYYKPFVRWIWFGGVFMAIGGVLAILDKRYR  641
            +LDNGAWAVR+YYKPFVRWIW GG++MA+GG+L + D RYR
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

249) ccmF in NC_006840


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  545 bits (2056),  Expect = 4e-156, Method: Compositional matrix adjust.
 Identities = 394/646 (61%), Positives = 518/646 (81%), Gaps = 8/646 (1%)

Query  1    MIAELGHFAMIASLGLAVLLSILPMYGASRGNKALMQSARPLAWGMFLLLSLSFGILMWA  60
            M++E GH  +  +LG+A+LLS+ P+ G +RG+  +M SA  +AW +F+ ++ +F +L+ A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FYVNDFTLQYVASNSNSLLPWYYRLTAVWGAHEGSLLLWVLIQAGWTVAVATFSRGMPQE  120
            F VNDFT+ YVA+NSN+ LP  YR++A WGAHEGSLLLWVL+ +GWT+AVA FSR +P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  SVARVLAVMGWITVGFLLFIILTSNPFLRTLPYFPIDGRDLNPLLQDPGLIIHPPMLYMG  180
             VARVLAVMG +  GFL FI++TS PF RTLP FP++GRDLNPLLQDPGLI+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFSFAIASLMTGRLDTAWARWSRPWTIAAWSFLTVGISLGSWWAYYELGWGGWW  240
            YVGFSVAF+FAIA+L++GRLD+A +R +RPWT+AAW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEKRGTFKAWTVllaisafslsllGTFLVRSGILV  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R+ FKAWT+LL+I AFSL LLGTFLVRSG+LV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPSRGMFILGFLVMVIGGSLLLFALKGASVRVRGNFSLFSREnallannillv  360
            SVHAFASDP+RGMFIL+F+V+V GGSLLLFA++G  VR R N +L SRE+ LL+NN+LL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  talvvvlvgtllplvHKQLGLGSVSIGAPFFDMLFAWLMIPFAFLLGIGPLIRWKKDKLS  420
            +A++VVL+GTLLPLVHKQLGLGS+S+G PFF+ +F+WLM+PFA+LLG+GPL+RW +D+  
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NLSKRLVISGAITVPLAALMMVMFADKFQFMPYLGWMMAIWIVILHGFELYERATHRHSF  480
            N+ K L  +   T+ L+ L+  ++ DK+  M  +G  MA WI +L   E  +R ++    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG---  477

Query  481  SVGITKLGRSHWAMIFAHIGLAVTIIGIAMVQNYSIEKDVRLAPGEHIEMNGYQFYFAGV  540
                TK + S W+M+ AH+GLAVTI GIA  QNYS+E+DVR+ +G+ + +++Y+F F  V
Sbjct  478  ----TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  RDTDGPNYDGYTADFDITLDGKAINTLHAEKRFYETAGSMMTEAAIDRGFTRDLYIAMGE  600
            RD  GPNY G  A +++T +G +   LHAEKR+Y+T+  +MTEAAID G+TRDLY A+GE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  RLDDNRSWAVRIYYKPFVRWIWAGSLFMAFGGALAMSDKRYRFRKN  646
             LD+  +WAVR+YYKPFVRWIWAG+L+MA+GG L ++D RYR RK 
Sbjct  594  ELDNG-AWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKP  638

250) ccmF_2 in NC_011184


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  544 bits (2055),  Expect = 5e-156, Method: Compositional matrix adjust.
 Identities = 393/646 (61%), Positives = 518/646 (81%), Gaps = 8/646 (1%)

Query  1    MIAELGHFAMIASLGLAVLLSILPMYGASRGNKALMQSARPLAWGMFLLLSLSFGILMWA  60
            M++E GH  +  +LG+A+LLS+ P+ G +RG+  +M SA  +AW +F+ ++ +F +L+ A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FYVNDFTLQYVASNSNSLLPWYYRLTAVWGAHEGSLLLWVLIQAGWTVAVATFSRGMPQE  120
            F VNDFT+ YVA+NSN+ LP  YR++A WGAHEGSLLLWVL+ +GWT+AVA FSR +P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  SVARVLAVMGWITVGFLLFIILTSNPFLRTLPYFPIDGRDLNPLLQDPGLIIHPPMLYMG  180
             VARVLAVMG +  GFL FI++TS PF RTLP FP++GRDLNPLLQDPGLI+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFSFAIASLMTGRLDTAWARWSRPWTIAAWSFLTVGISLGSWWAYYELGWGGWW  240
            YVGFSVAF+FAIA+L++GRLD+A +R +RPWT+AAW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEKRGTFKAWTVllaisafslsllGTFLVRSGILV  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R+ FKAWT+LL+I AFSL LLGTFLVRSG+LV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPSRGMFILGFLVMVIGGSLLLFALKGASVRVRGNFSLFSREnallannillv  360
            SVHAFASDP+RGMFIL+F+V+V GGSLLLFA++G  VR R N +L SRE+ LL+NN+LL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  talvvvlvgtllplvHKQLGLGSVSIGAPFFDMLFAWLMIPFAFLLGIGPLIRWKKDKLS  420
            +A++VVL+GTLLPLVHKQLGLGS+S+G PFF+ +F+WLM+PFA+LLG+GPL+RW +D+  
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  NLSKRLVISGAITVPLAALMMVMFADKFQFMPYLGWMMAIWIVILHGFELYERATHRHSF  480
            N+ K L  +   T+ L+ L+  ++ DK+  M  +G  MA WI +L   E  +R ++    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG---  477

Query  481  SVGITKLGRSHWAMIFAHIGLAITIIGIAMVQNYSIEKDVRLAPGEHIEMNGYQFYFAGV  540
                TK + S W+M+ AH+GLA+TI GIA  QNYS+E+DVR+ +G+ + +++Y+F F  V
Sbjct  478  ----TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  RDTDGPNYDGYTADFDITLDGKAINTLHAEKRFYETAGSMMTEAAIDRGFTRDLYIAMGE  600
            RD  GPNY G  A +++T +G +   LHAEKR+Y+T+  +MTEAAID G+TRDLY A+GE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  RLDDNRSWAVRIYYKPFVRWIWAGSLFMAFGGALAMSDKRYRFRKN  646
             LD+  +WAVR+YYKPFVRWIWAG+L+MA+GG L ++D RYR RK 
Sbjct  594  ELDNG-AWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKP  638

251) ccmF in NC_016808


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  544 bits (2054),  Expect = 6e-156, Method: Compositional matrix adjust.
 Identities = 381/621 (62%), Positives = 503/621 (81%), Gaps = 7/621 (1%)

Query  1    MIAELGNYALALSLAIAMLVAIFALWGAEKNHIQLMSLARPMTYGLFISLTVAFVALFYL  60
            M++E G+  L L+L++A+L+++++LWG  + + ++M+ A   +  LFI ++ AF  L   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FAVNDFSVQYIVNNSNTNLPLHYRLSAVWGSHEGSlllwiwlltlwGAAVAMFSKQLPQE  120
            F VNDF+V Y+  NSNT+LP+ YR++A WG+HEGSLLLW+ L++ W  AVA+FS+Q+P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVSRVLGIMGIISIGFLIFVLFTSNPFDRTFPDFPVDGKELNPLLQDVGLIFHPPLLYMG  180
             V+RVL++MG++  GFL F+LFTS PF RT+P FPV+G++LNPLLQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMTGKLDTAWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++G+LD+A +R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLMPWIAGTALLHSLAVTEKRGSFKAWTVllailafslcllGTFLVRSGILV  300
            FWDPVENAS+MPW+AGTALLHS+AVTE+R++FKAWT+LL+I AFSLCLLGTFLVRSG+LV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPTRGLYILAYLVVVIGGSFVLYAYKGSQIRSRENAERYSRETalllnnillm  360
            SVHAFASDP+RG++ILA++V+V GGS++L+A +G ++RSR N    SRE+ LL NN+LLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  salsvvllgtllplvHKQLGLGTISVGAPFFDQMFLIIMVPFSLLLGVGPLIKWRRDEFS  420
            +A+ VVLLGTLLPLVHKQLGLG+ISVG PFF+ MF  +MVPF+LLLGVGPL++W RD   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  AIRKPVILSLIVMLVAGFALPYLLQDQLTVSAVLGTMMAVFIVLLSVYELQQRATHRSAF  480
             IRK +  +++  LV +  LP LL+D++   + +G  MA  I +L+V E  QR ++    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG---  477

Query  481  WSGLTKLSRSHWGMVLAHLGVAMSVWGIAFSQNYSMERDVRMNVGDSVQIADYQFTFQGI  540
                TK S S WGMV AHLG+A+++ GIAFSQNYS+ERDVRM  GDSV I DY+FTF+ +
Sbjct  478  ----TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  TEANGPNYLGGKAQVDIRRNGQVEAILFAEKRFYTVSKMTMTEAAIDWGFTRDIYVALGE  600
             +  GPNY GG A +++ R+G+ EA+L AEKR+Y  S+M MTEAAID G+TRD+Y ALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  NLGQDAWALRLYYKPFIRWIW  621
            +L+++AWA+RLYYKPF+RWIW
Sbjct  594  ELDNGAWAVRLYYKPFVRWIW  614

252) VCLMA_A1790 in NC_017270


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  544 bits (2053),  Expect = 8e-156, Method: Compositional matrix adjust.
 Identities = 385/625 (62%), Positives = 499/625 (80%), Gaps = 8/625 (1%)

Query  27   GASRNNTLLMNTARPLSWGMFFLLSISFAVLLWAFYKNDFTVQYVASNSNSELPWYYRLT  86
            G +R ++ +M +A  ++W +F+ ++ +F VL+ AF  NDFTV YVA+NSN++LP  YR++
Sbjct  27   GVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVA  86

Query  87   AVWGAHEGSLLLWVLIQAAWTVAVASFSRGMPQESVARVLAVMGMITVGFLLFIILTSNP  146
            A WGAHEGSLLLWVL+ ++WT+AVA FSR +P + VARVLAVMGM+  GFL FI++TS P
Sbjct  87   ATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGP  146

Query  147  FLRTLPYFPIDGRDLNPLLQDPGLIIHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWAR  206
            F RTLP FP++GRDLNPLLQDPGLI+HPP+LYMGYVGFSVAF+FAIA+L++GRLD+A +R
Sbjct  147  FARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTR  206

Query  207  WSRPWTTAAWLFLTLGIVLGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAVT  266
             +RPWT AAW+FLTLGIVLGS WAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS+AVT
Sbjct  207  FARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVT  266

Query  267  EKRGTFKAWTVllaisafslsllGTFLVRSGILVSVHAFASDPARGMFILGFLIAVIGGS  326
            E+R+ FKAWT+LL+I AFSL LLGTFLVRSG+LVSVHAFASDPARGMFIL+F++ V GGS
Sbjct  267  EQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGS  326

Query  327  LLLFAIKGASVRVRGNFELVSRENSLLVNNVLLMTALAVVLIGTLLPLVHKQLGLGSVSI  386
            LLLFA++G  VR R N  L SRE+ LL NNVLLM+A+ VVL+GTLLPLVHKQLGLGS+S+
Sbjct  327  LLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISV  386

Query  387  GAPFFNMLFAWLMIPFAFFMGIGPLIRWKRDQISTLFKPMLITamaslvlaalmmwlNAP  446
            G PFFN +F+WLM+PFA+++G+GPL+RW RD+   + K +  + +++LVL+ L+ WL   
Sbjct  387  GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLED  446

Query  447  TFSPMAYLGWVMAWWILLLHAYELHTRATHRHSFMVGVKKLQRSHWAMMLGHVGLAVSII  506
             + +M+ +G  MA WI +L   E   R ++         K   S W+M+ +H+GLAV+I 
Sbjct  447  KIIAMTAVGMAMACWIAVLAVAEAVQRVSR-------GTKTSLSYWGMVAAHLGLAVTIT  499

Query  507  GIAMVQNYSIERDVRLAPGDNFQLNEYNFYFQGVRDKDGPNYDGYIADFEITIQGQYVNT  566
            GIA  QNYS+ERDVR+ +GD+  +++Y F F+ VRD  GPNY G +A + +T +G+    
Sbjct  500  GIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAV  559

Query  567  LHAEKRFYRTAKSMMTEAAIDRGITRDLYIAMGERLDDNRSWAVRIYYKPYVRWiwaggl  626
            LHAEKR+Y T++ +MTEAAID G+TRDLY A+GE LD+  +WAVR+YYKP+VRWIWAGGL
Sbjct  560  LHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG-AWAVRLYYKPFVRWIWAGGL  618

Query  627  lmaiggalaiSDKRYRFRKNAHQEA  651
            LMA+GG L ++D RYR RK   + +
Sbjct  619  LMALGGLLCLADPRYRRRKPLPEAG  643

253) Asuc_0848 in NC_009655


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  544 bits (2052),  Expect = 9e-156, Method: Compositional matrix adjust.
 Identities = 390/627 (63%), Positives = 505/627 (81%), Gaps = 7/627 (1%)

Query  22   IFPLWGAEKGNIQFMALARPMTYGLFLSLSVAFGALFYAFAVNDFSVQYVVNNSNSTLPL  81
            ++PLWG  +G+ + MA A   +  LF+ ++ AF  L  AF VNDF+V YV  NSN+ LP+
Sbjct  22   VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   HYRLSAVWGSHEGSLLLWIWMLTLWGTAVALFSKRLPQEAVARVLGIMGIISIGFLLFVL  141
             YR++A WG+HEGSLLLW+ +++ W  AVA+FS+++P + VARVL++MG++  GFL F+L
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  FTSNPFVRTFPDFPADGRELNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGKLD  201
            FTS PF RT+P FP +GR+LNPLLQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++G+LD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  202  TAWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWWFWDPVENASLMPWLAGTALLH  261
            +A +R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWWFWDPVENAS+MPWLAGTALLH
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  262  SLAVTEKRGSFKAWTVllailafslcllGTFLVRSGILVSVHAFASDPTRGLYILAYLVV  321
            S+AVTE+R++FKAWT+LL+I AFSLCLLGTFLVRSG+LVSVHAFASDP+RG++ILA++V+
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  322  VIGGSLTLYAIKGNQIRSRDNSERYSRESMLLLNNIFLMTAlsvvllgtllplvHKQLGL  381
            V GGSL L+A++G+++RSR N+   SRES+LL NN++LM+A+ VVLLGTLLPLVHKQLGL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  382  GTISIGAPFFDQMFLIICTPFALLLGIGPLVKWRRDQFSAIRKPVIISVIlmallgfglp  441
            G+IS+G PFF+ MF  +  PFALLLG+GPLV+W RD+   IRK +  +V+   +L+  LP
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLP  441

Query  442  lllqnklTVSAVLGVMMSAIIVLLSLYELHLRATHRSDFWTGLSKLSRSHWGMIAAHLGV  501
             LL++K+   + +G+ M+  I +L++ E   R ++        +K S S WGM+AAHLG+
Sbjct  442  WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG-------TKTSLSYWGMVAAHLGL  494

Query  502  AMTIWGVAFSQNYSVERDVRMNVGDSVQIEDYRFEFKGISEANGPNYAGGKAQVDIFVND  561
            A+TI G+AFSQNYSVERDVRM  GDSV I+DYRF F+ + +  GPNY GG A +++  ++
Sbjct  495  AVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  562  KPEATLFAEKRFYTVSKMTMTEAAIDWGFTRDLYVALGESLGDGSWALRLYYKPFVRWIW  621
             PEA L AEKR+Y  S+M MTEAAID G+TRDLY ALGE L++G+WA+RLYYKPFVRWIW
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

Query  622  fgglfmvlggllCMSDRRYRFSKIVKE  648
             GGL+M LGGLLC++D RYR  K + E
Sbjct  615  AGGLLMALGGLLCLADPRYRRRKPLPE  641

254) ccmF in NC_011852


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  544 bits (2052),  Expect = 9e-156, Method: Compositional matrix adjust.
 Identities = 388/619 (63%), Positives = 494/619 (80%), Gaps = 7/619 (1%)

Query  27   GAHKQNASLMALARPMTWAVFLALSISFGSLFYLFAVNDFTVQYVVNNSNSTLPLEYRLS  86
            G  + +A +MA A   +W +F+ ++ +F  L   F VNDFTV YV  NSN+ LP+ YR++
Sbjct  27   GVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVA  86

Query  87   AVWGSHEGslllwiwllslwsVAVATFSRQMPEEAIARVLGVMGLVSIGFLVFILFTSNP  146
            A WG+HEGSLLLW+ L+S W++AVA FSRQ+P + +ARVL+VMG+V  GFL FILFTS P
Sbjct  87   ATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGP  146

Query  147  FNRTFPDFPVDGRELNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGRLDTAWAR  206
            F RT+P FPV+GR+LNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLD+A +R
Sbjct  147  FARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTR  206

Query  207  WSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWWFWDPVENASLMPWIAGTALIHSLAVT  266
             +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWWFWDPVENAS+MPW+AGTAL+HS+AVT
Sbjct  207  FARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVT  266

Query  267  EKRSTFKAWTVllailafslcllGTFLVRSGILVSVHAFASDPTRGLYILAYLVVVIGGS  326
            E+R+ FKAWT+LL+I AFSLCLLGTFLVRSG+LVSVHAFASDP+RG++ILA++V+V GGS
Sbjct  267  EQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGS  326

Query  327  LLLYAYQGSKIKSLDNSERYSRESmlllnnvllmAFLSVVFLGTILPLIHKQIGLGTISI  386
            LLL+A +G +++S  N+   SRES+LL NNVLLMA + VV+LGT+LPL+HKQ+GLG+IS+
Sbjct  327  LLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISV  386

Query  387  GAPFFDQMFMILMVPFAFLLGIGPLVKWRRDQVSAIRKPVLISLAVMILLGFGLPYLFAS  446
            G PFF+ MF  LMVPFA+LLG+GPLV+W RD+   IRK +  ++   ++L+  LP L+  
Sbjct  387  GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLED  446

Query  447  KITVSVVLGTMMSVIIVALSLYELHQRATHRHSFLQGILKLSRSHWGMVLAHLGVAMTVF  506
            KI     +G  M+  I  L++ E  QR ++         K S S WGMV AHLG+A+T+ 
Sbjct  447  KIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT-------KTSLSYWGMVAAHLGLAVTIT  499

Query  507  GIAFSQNYSIEKDVRMNVGDKVEILDYNFTFKGIRDSNGANYIGGTADIEIHRNGKYEAT  566
            GIAFSQNYS+E+DVRM  GD V I DY FTF+ +RD  G+NY GG A I + R+G  EA 
Sbjct  500  GIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAV  559

Query  567  LHAEKRFYNVSKMGMTEAAIDWGFSRDLYAALGERLEDGSWGVRLYYKPFIRWIWFGGLF  626
            LHAEKR+YN S+M MTEAAID G++RDLYAALGE L++G+W+VRLYYKPF+RWIW GGL+
Sbjct  560  LHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLL  619

Query  627  MAIGGILCMMDRRYRLKQN  645
            MA+GG+LC+ D RYR ++ 
Sbjct  620  MALGGLLCLADPRYRRRKP  638

255) NT05HA_0031 in NC_012913


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  543 bits (2049),  Expect = 1e-155, Method: Compositional matrix adjust.
 Identities = 404/629 (65%), Positives = 502/629 (80%), Gaps = 7/629 (1%)

Query  22   IFPLWGAEKGNAQLMALARPMTYGLFIVLSVSFGALFYLFAVNDFSVQYVVNNSNTTLPI  81
            ++PLWG  +G+A++MA A   +  LFI ++ +F  L   F VNDF+V YV  NSNT LP+
Sbjct  22   VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   YYRLSAVWGSHEGslllwiwllslwsTAVALFSKRLPQEAAARVLGIMGIISIGFLLFVL  141
             YR++A WG+HEGSLLLW+ L+S W+ AVA+FS+++P +  ARVL++MG++  GFL F+L
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  FTSNPFARTFPDFPVDGKELNPLLQDVGLIFHPPLLYMGYVGFSVAFAFSIASLMTGKLD  201
            FTS PFART+P FPV+G++LNPLLQD GLIFHPPLLYMGYVGFSVAFAF+IA+L++G+LD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  202  TAWARWSRPWTMAAWIFLTLGIVLGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261
            +A +R +RPWT+AAW+FLTLGIVLGS WAYYELGWGGWWFWDPVENASFMPWLAGTALLH
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  262  SLAVTEKRGSFKAWTVllailafslcllGTFLVRSGILVSVHAFASDPTRGLYVLAYLIV  321
            S+AVTE+R++FKAWT+LL+I AFSLCLLGTFLVRSG+LVSVHAFASDP+RG+++LA++++
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  322  VIGGSLTLYAYKGSQIRSRDNAERYSRESllllnnillMTAlcvvllgtllplvHKQLGL  381
            V GGSL L+A +G ++RSR N    SRESLLL NN+LLM+A+ VVLLGTLLPLVHKQLGL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  382  GSISIGAPFFDQMFLIIMTPFALLLGIGPLVKWRRDQFSAIRTPVVVSVIIMLIAGFALP  441
            GSIS+G PFF+ MF  +M PFALLLG+GPLV+W RD+   IR  +  +V+  L+ +  LP
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLP  441

Query  442  YLLQDKITVSAVLGTMMTVIIVLLSLYEMHQRATHRDSFLQGITKLSRSHWGMLLAHLGV  501
             LL+DKI   + +G  M+  I +L++ E  QR ++        TK S S WGM+ AHLG+
Sbjct  442  WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG-------TKTSLSYWGMVAAHLGL  494

Query  502  AMTVWGIAFSQNYSVERDVRMNVGDSVQIADYDFTFKGISDANGPNYIGGKAQIDITRYG  561
            A+T+ GIAFSQNYSVERDVRM  GDSV I DY FTF+ + D  GPNY GG A I++TR G
Sbjct  495  AVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  562  KPEATLFAEKRLYTVSKMPMTEAAIDWGFTRDLYVALGEKLDNNAWALRLYYKPFIRWIW  621
             PEA L AEKRLY  S+M MTEAAID G+TRDLY ALGE LDN AWA+RLYYKPF+RWIW
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

Query  622  lgglfmalggllCMFDRRYRFSKILEKKE  650
             GGL+MALGGLLC+ D RYR  K L    
Sbjct  615  AGGLLMALGGLLCLADPRYRRRKPLPEAG  643

256) K756_07645 in NC_021521


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  543 bits (2050),  Expect = 1e-155, Method: Compositional matrix adjust.
 Identities = 388/619 (63%), Positives = 494/619 (80%), Gaps = 7/619 (1%)

Query  27   GAHKQNASLMALARPMTWAVFLALSISFGSLFYLFAVNDFTVQYVVNNSNSTLPLEYRLS  86
            G  + +A +MA A   +W +F+ ++ +F  L   F VNDFTV YV  NSN+ LP+ YR++
Sbjct  27   GVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVA  86

Query  87   AVWGSHEGslllwiwllslwsVAVATFSRQMPEEAIARVLGVMGLVSIGFLVFILFTSNP  146
            A WG+HEGSLLLW+ L+S W++AVA FSRQ+P + +ARVL+VMG+V  GFL FILFTS P
Sbjct  87   ATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGP  146

Query  147  FNRTFPDFPVDGRELNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGRLDTAWAR  206
            F RT+P FPV+GR+LNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLD+A +R
Sbjct  147  FARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTR  206

Query  207  WSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWWFWDPVENASLMPWIAGTALIHSLAVT  266
             +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWWFWDPVENAS+MPW+AGTAL+HS+AVT
Sbjct  207  FARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVT  266

Query  267  EKRSTFKAWTVllailafslcllGTFLVRSGILVSVHAFASDPTRGLYILAYLVVVIGGS  326
            E+R+ FKAWT+LL+I AFSLCLLGTFLVRSG+LVSVHAFASDP+RG++ILA++V+V GGS
Sbjct  267  EQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGS  326

Query  327  LLLYAYQGSKIKSLDNSERYSRESmlllnnvllmAFLSVVFLGTILPLIHKQIGLGTISI  386
            LLL+A +G +++S  N+   SRES+LL NNVLLMA + VV+LGT+LPL+HKQ+GLG+IS+
Sbjct  327  LLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISV  386

Query  387  GAPFFDQMFMILMVPFAFLLGIGPLVKWRRDQVSAIRKPVLISLAVMVLLGFGLPYLFAS  446
            G PFF+ MF  LMVPFA+LLG+GPLV+W RD+   IRK +  ++   ++L+  LP L+  
Sbjct  387  GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLED  446

Query  447  KITVSVVLGTMMSVIIVALSLYELHQRATHRHSFLQGILKLSRSHWGMVLAHLGVAMTVF  506
            KI     +G  M+  I  L++ E  QR ++         K S S WGMV AHLG+A+T+ 
Sbjct  447  KIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT-------KTSLSYWGMVAAHLGLAVTIT  499

Query  507  GIAFSQNYSIEKDVRMNVGDKVEILDYNFTFKGIRDSNGANYIGGTADIEIHRNGKYEAT  566
            GIAFSQNYS+E+DVRM  GD V I DY FTF+ +RD  G+NY GG A I + R+G  EA 
Sbjct  500  GIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAV  559

Query  567  LHAEKRFYNVSKMGMTEAAIDWGFSRDLYAALGERLEDGSWGVRLYYKPFIRWIWFGGLF  626
            LHAEKR+YN S+M MTEAAID G++RDLYAALGE L++G+W+VRLYYKPF+RWIW GGL+
Sbjct  560  LHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLL  619

Query  627  MAIGGILCMMDRRYRLKQN  645
            MA+GG+LC+ D RYR ++ 
Sbjct  620  MALGGLLCLADPRYRRRKP  638

257) ccmF in NC_017027


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  542 bits (2044),  Expect = 4e-155, Method: Compositional matrix adjust.
 Identities = 383/621 (62%), Positives = 502/621 (81%), Gaps = 7/621 (1%)

Query  1    MIAELGNYALALSLAIAMLVAIFALWGAEKNHIQLMSLARPMTYGLFISLTVAFVALFYL  60
            M++E G+  L L+L++A+L+++++LWG  + + ++M+ A   +  LFI ++ AF  L   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FAVNDFSVQYIVNNSNTNLPLHYRLSAVWGSHEGSlllwiwlltlwGAAVAWFSKQLPQE  120
            F VNDF+V Y+  NSNT+LP+ YR++A WG+HEGSLLLW+ L++ W  AVA FS+Q+P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLGIMGIISIGFLIFVLFTSNPFDRTFPDFPVDGKELNPLLQDVGLIFHPPLLYMG  180
             VARVL++MG++  GFL F+LFTS PF RT+P FPV+G++LNPLLQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMTGKLDTAWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++G+LD+A +R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLMPWIAGTALLHSLAVTEKRGSFKAWTVllailafslcllGTFLVRSGILV  300
            FWDPVENAS+MPW+AGTALLHS+AVTE+R++FKAWT+LL+I AFSLCLLGTFLVRSG+LV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPTRGLYILAYLVVVIGGSLVLYAYKGSQIRSRENAERYSRETalllnnillm  360
            SVHAFASDP+RG++ILA++V+V GGSL+L+A +G ++RSR N    SRE+ LL NN+LLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  salsvvllgtllplvHKQLGLGTISVGAPFFDQMFLIIMVPFSLLLGVGPLIKWRRDEFS  420
            +A+ VVLLGTLLPLVHKQLGLG+ISVG PFF+ MF  +MVPF+LLLGVGPL++W RD   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  AIRKPVILSLIVMLVAGFALPYLLQDQLTVSAVLGTMMAVFIVLLSVYEFQQRATHRSAF  480
             IRK +  +++  LV +  LP LL+D++   + +G  MA  I +L+V E  QR ++    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG---  477

Query  481  WSGLTKLSRSHWGMVLAHLGMAMSVWGIAFSQNYSIERDVRMNVGDSVQIADYQFTFQGI  540
                TK S S WGMV AHLG+A+++ GIAFSQNYS+ERDVRM  GDSV I DY+FTF+ +
Sbjct  478  ----TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  TEANGPNYLGGKAQVDIRRNGQVEAILFAEKRFYTVSKMTMTEAAIDWGFTRDIYVALGE  600
             +  GPNY GG A +++ R+G+ EA+L AEKR+Y  S+M MTEAAID G+TRD+Y ALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  NLGQDAWALRLYYKPFIRWIW  621
            +L+++AWA+RLYYKPF+RWIW
Sbjct  594  ELDNGAWAVRLYYKPFVRWIW  614

258) NT08PM_1383 in NC_017764


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  541 bits (2043),  Expect = 5e-155, Method: Compositional matrix adjust.
 Identities = 383/621 (62%), Positives = 502/621 (81%), Gaps = 7/621 (1%)

Query  1    MIAELGNYALALSLAIAMLVAIFALWGAEKNHIQLMSLARPMTYGLFISLTVAFVALFYL  60
            M++E G+  L L+L++A+L+++++LWG  + + ++M+ A   +  LFI ++ AF  L   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FAVNDFSVQYIVNNSNTNLPLHYRLSAVWGSHEGSlllwiwlltlwGAAVAWFSKQLPQE  120
            F VNDF+V Y+  NSNT+LP+ YR++A WG+HEGSLLLW+ L++ W  AVA FS+Q+P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLGIMGIISIGFLIFVLFTSNPFDRTFPDFPVDGKELNPLLQDVGLIFHPPLLYMG  180
             VARVL++MG++  GFL F+LFTS PF RT+P FPV+G++LNPLLQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMTGKLDTAWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++G+LD+A +R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLMPWIAGTALLHSLAVTEKRGSFKAWTVllailafslcllGTFLVRSGILV  300
            FWDPVENAS+MPW+AGTALLHS+AVTE+R++FKAWT+LL+I AFSLCLLGTFLVRSG+LV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPTRGLYILAYLVVVIGGSLVLYAYKGSQIRSRENAERYSRETalllnnillm  360
            SVHAFASDP+RG++ILA++V+V GGSL+L+A +G ++RSR N    SRE+ LL NN+LLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  salsvvllgtllplvHKQLGLGTISVGAPFFDQMFLIIMVPFSLLLGVGPLIKWRRDEFS  420
            +A+ VVLLGTLLPLVHKQLGLG+ISVG PFF+ MF  +MVPF+LLLGVGPL++W RD   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  AIRKPVILSLIVMLVAGFALPYLLQDQLTVSAVLGTMMAVFIVLLSVYELQQRATHRSAF  480
             IRK +  +++  LV +  LP LL+D++   + +G  MA  I +L+V E  QR ++    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG---  477

Query  481  WSGLTKLSRSHWGMVLAHLGVAMSVWGIAFSQNYSIERDVRMNVGDSVQIADYQFTFQGI  540
                TK S S WGMV AHLG+A+++ GIAFSQNYS+ERDVRM  GDSV I DY+FTF+ +
Sbjct  478  ----TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  TEANGPNYLGGKAQVDIRRNGQVEAILFAEKRFYTVSKMTMTEAAIDWGFTRDIYVALGE  600
             +  GPNY GG A +++ R+G+ EA+L AEKR+Y  S+M MTEAAID G+TRD+Y ALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  NLGQDAWALRLYYKPFIRWIW  621
            +L+++AWA+RLYYKPF+RWIW
Sbjct  594  ELDNGAWAVRLYYKPFVRWIW  614

259) ccmF in NC_002663


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  541 bits (2043),  Expect = 5e-155, Method: Compositional matrix adjust.
 Identities = 383/621 (62%), Positives = 502/621 (81%), Gaps = 7/621 (1%)

Query  1    MIAELGNYALALSLAIAMLVAIFALWGAEKNHIQLMSLARPMTYGLFISLTVAFVALFYL  60
            M++E G+  L L+L++A+L+++++LWG  + + ++M+ A   +  LFI ++ AF  L   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FAVNDFSVQYIVNNSNTNLPLHYRLSAVWGSHEGSlllwiwlltlwGAAVAWFSKQLPQE  120
            F VNDF+V Y+  NSNT+LP+ YR++A WG+HEGSLLLW+ L++ W  AVA FS+Q+P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLGIMGIISIGFLIFVLFTSNPFDRTFPDFPVDGKELNPLLQDVGLIFHPPLLYMG  180
             VARVL++MG++  GFL F+LFTS PF RT+P FPV+G++LNPLLQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMTGKLDTAWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++G+LD+A +R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLMPWIAGTALLHSLAVTEKRGSFKAWTVllailafslcllGTFLVRSGILV  300
            FWDPVENAS+MPW+AGTALLHS+AVTE+R++FKAWT+LL+I AFSLCLLGTFLVRSG+LV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPTRGLYILAYLVVVIGGSLVLYAYKGSQIRSRENAERYSRETalllnnillm  360
            SVHAFASDP+RG++ILA++V+V GGSL+L+A +G ++RSR N    SRE+ LL NN+LLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  salsvvllgtllplvHKQLGLGTISVGAPFFDQMFLIIMVPFSLLLGVGPLIKWRRDEFS  420
            +A+ VVLLGTLLPLVHKQLGLG+ISVG PFF+ MF  +MVPF+LLLGVGPL++W RD   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  AIRKPVILSLIVMLVAGFALPYLLQDQLTVSAVLGTMMAVFIVLLSVYELQQRATHRSAF  480
             IRK +  +++  LV +  LP LL+D++   + +G  MA  I +L+V E  QR ++    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG---  477

Query  481  WSGLTKLSRSHWGMVLAHLGVAMSVWGIAFSQNYSIERDVRMNVGDSVQIADYQFTFQGI  540
                TK S S WGMV AHLG+A+++ GIAFSQNYS+ERDVRM  GDSV I DY+FTF+ +
Sbjct  478  ----TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  TEANGPNYLGGKAQVDIRRNGQVEAILFAEKRFYTVSKMTMTEAAIDWGFTRDIYVALGE  600
             +  GPNY GG A +++ R+G+ EA+L AEKR+Y  S+M MTEAAID G+TRD+Y ALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  NLGQDAWALRLYYKPFIRWIW  621
            +L+++AWA+RLYYKPF+RWIW
Sbjct  594  ELDNGAWAVRLYYKPFVRWIW  614

260) VS_0855 in NC_011753


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  539 bits (2036),  Expect = 2e-154, Method: Compositional matrix adjust.
 Identities = 387/625 (62%), Positives = 499/625 (80%), Gaps = 8/625 (1%)

Query  27   GAARNNTLLMNSARPLSWGMFGFLAISFFILCYAFYTNDFTIQYVASNSNSQLPWYYRIT  86
            G AR ++ +M SA  ++W +F  +A +FF+L  AF  NDFT+ YVA+NSN+QLP  YR++
Sbjct  27   GVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVA  86

Query  87   AVWGAHEGSLLLWVLIQAGWTVAVATFSRGMPQESVARVLAIMGLITVGFLLFIIVTSNP  146
            A WGAHEGSLLLWVL+ +GWT+AVA FSR +P + VARVLA+MG++  GFL FI+ TS P
Sbjct  87   ATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGP  146

Query  147  FLRTLPFFPVDGRDLNPLLQDPGLIIHPPMLYMGYVGFSVAFSFAIASLMSGRLDTAWAR  206
            F RTLP FPV+GRDLNPLLQDPGLI+HPP+LYMGYVGFSVAF+FAIA+L+SGRLD+A +R
Sbjct  147  FARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTR  206

Query  207  WSRPWTIAAWLFLTVGIALGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAVT  266
             +RPWT+AAW+FLT+GI LGS WAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS+AVT
Sbjct  207  FARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVT  266

Query  267  EKRGTFKAWTVllaisafslsllGTFLVRSGILVSVHAFASDPARGMFILGFLVFVIGGS  326
            E+R+ FKAWT+LL+I AFSL LLGTFLVRSG+LVSVHAFASDPARGMFIL+F+V+V GGS
Sbjct  267  EQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGS  326

Query  327  LLLFAVKGASVRVRGNFDLVSREnallgnnilliaalvvvlvgtllplvHKQLGLGSVSI  386
            LLLFAV+G  VR R N  L SRE+ LLGNN+LL+AA++VVL+GTLLPLVHKQLGLGS+S+
Sbjct  327  LLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISV  386

Query  387  GAPFFDMLFFWLMIPFSFLLGIGPLIRWKRDNLSKLVKPMLISGVFSLGLSALMVTILAD  446
            G PFF+ +F WLM+PF++LLG+GPL+RW RD   ++ K +  + V +L LS L+  +L D
Sbjct  387  GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLED  446

Query  447  RFSGTAFAGWVMAFWIIFMHGFELHERATHRHTFLKGLTKLPRSHWAMMCGHIGLAVTVI  506
            ++ + +  G  MA WI  +   E  +R ++        TK + S W+M+ +H+GLAVT+ 
Sbjct  447  KIIAMTAVGMAMACWIAVLAVAEAVQRVSRG-------TKTSLSYWGMVAAHLGLAVTIT  499

Query  507  GIAMVQNYSIERDVRLAPGESYQLEEYSFLFTGVRDKDGPNYDGYIADFEITKEGKYINT  566
            GIA  QNYS+ERDVR+ +G+S  +++Y F F  VRD  GPNY G +A + +T++G     
Sbjct  500  GIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAV  559

Query  567  LHAEKRFYTTAKSMMTEAAIDRGVTRDLYIAMGERLDDNKSWAVRIYYKPFVRWIWAGSL  626
            LHAEKR+Y T++ +MTEAAID G+TRDLY A+GE LD+  +WAVR+YYKPFVRWIWAG+L
Sbjct  560  LHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG-AWAVRLYYKPFVRWIWAGGL  618

Query  627  IMSIGGVIAISDRRYRFRKPTKKST  651
            +M++GG++ ++D RYR RKP   + 
Sbjct  619  LMALGGLLCLADPRYRRRKPLPEAG  643

261) PARA_00260 in NC_015964


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  538 bits (2031),  Expect = 4e-154, Method: Compositional matrix adjust.
 Identities = 383/628 (61%), Positives = 503/628 (81%), Gaps = 7/628 (1%)

Query  22   IFPLWGAEKSHPQLMSLARPMTYGLFFSLTIAFAALFYLFAVNDFSVQYVVnnsnssLPI  81
            ++PLWG  ++++++M+ A   +  LF+ ++ AF  L   F VNDF+V YV  NSN+ LP+
Sbjct  22   VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   YYRLSAVWGSHEGSlllwiwlltlwGAAVALFSKHLPQEAVARVLGIMGIISIGFLLFVL  141
             YR++A WG+HEGSLLLW+ L++ W  AVA+FS+++P + VARVL++MG++  GFL F+L
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  FTSNPFTRTFPDFPVDGRELNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGKLD  201
            FTS PF+RT+P FPV+GR+LNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++G+LD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  202  SAWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWWFWDPVENSSLMPWLAGTALIH  261
            SA +R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWWFWDPVEN+S+MPWLAGTAL+H
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  262  SLAVTEKRGSFKAWTVllailafslcllGTFLVRSGILVSVHAFASDPTRGLYILAYLVV  321
            S+AVTE+R++FKAWT+LL+I AFSLCLLGTFLVRSG+LVSVHAFASDP+RG++ILA++V+
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  322  VIGGSLTLYAYKGNQIRSRDNAERYSRETllllnnillMTALCVVFLGTLLPLVHKQLGL  381
            V GGSL L+A +G+++RSR N    SRE+LLL NN+LLM+A+ VV+LGTLLPLVHKQLGL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  382  GSISIGAPFFDQMFLIIMTPFALLLGIGPLVKWRRDQFSEIRTPVVVSVIVMAIAGFALP  441
            GSIS+G PFF+ MF  +M PFALLLG+GPLV+W RD+  +IR  +  +V+   + +  LP
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLP  441

Query  442  YFLHNKLTVSVVLGTMMSVIIVLLSLYEMKQRATHRESFFKGITKLSRSHWGMILAHLGV  501
             +L++K+     +G  M+  I +L++ E  QR ++        TK S S WGM+ AHLG+
Sbjct  442  WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG-------TKTSLSYWGMVAAHLGL  494

Query  502  AMTVWGIAFSQNFSVERDVRMAVGDTVQIADYDFTFTGVSDANGPNYMGGKAQIDISKDG  561
            A+T+ GIAFSQN+SVERDVRM  GD+V I DY FTF  V D  GPNY GG A I+++++G
Sbjct  495  AVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  562  KLEATLFAEKRFYTVSKMPMTEAAIDWGFTRDLYVALGEKIEDNSWALRLYYKPFIRWIW  621
              EA L AEKR+Y  S+M MTEAAID G+TRDLY ALGE +++ +WA+RLYYKPF+RWIW
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

Query  622  IGGLFMAIGGLLCMFDRRYRFSRLVKQS  649
             GGL+MA+GGLLC+ D RYR  + + ++
Sbjct  615  AGGLLMALGGLLCLADPRYRRRKPLPEA  642

262) F382_06640 in NC_021743


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  538 bits (2029),  Expect = 6e-154, Method: Compositional matrix adjust.
 Identities = 379/621 (62%), Positives = 496/621 (80%), Gaps = 13/621 (2%)

Query  26   WGAEKQNSTLIALARPMTWAMFLALTVSFGSLFYLFAVNDFTVQYVVNNSNSRLPLQYRL  85
            WG  + ++ ++A A   +W +F+ ++ +F  L   F VNDFTV YV  NSN++LP+ YR+
Sbjct  26   WGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRV  85

Query  86   SAVWGAHEgslllwvwllslwsvgvATFTRKMPEDAVARVLGLMGVIGIGFLMFVIFTSN  145
            +A WGAHEGSLLLWV L+S W+++VA F+R++P D VARVL++MG++  GFL F++FTS 
Sbjct  86   AATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSG  145

Query  146  PFDRTFPNFPIDGKELNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGRLDTAWA  205
            PF RT+P FP++G++LNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLD+A +
Sbjct  146  PFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFT  205

Query  206  RWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWWFWDPVENASLMPWLAGTALIHSLAV  265
            R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWWFWDPVENAS+MPWLAGTAL+HS+AV
Sbjct  206  RFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAV  265

Query  266  TEKRGTFKAWTVLLAILAFSLCLVGTFLVRSGILVSVHAFASDPTRGLYIlaylvlvvgg  325
            TE+R+ FKAWT+LL+I AFSLCL+GTFLVRSG+LVSVHAFASDP+RG++ILA++VLV GG
Sbjct  266  TEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGG  325

Query  326  slllyaFKGSEIKSLDNYERYSRETMLLINNILLMAFLSVVFLGTLLPLIHKQIGLGTIS  385
            SLLL+A +G  ++S  N    SRE++LL NN+LLMA + VV+LGTLLPL+HKQ+GLG+IS
Sbjct  326  SLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSIS  385

Query  386  IGAPFFDQMFLILMVPFSFVLGIGPLVKWRRDQVSAIRK---PVIIATILMALLGFGLPY  442
            +G PFF+ MF  LMVPF+++LG+GPLV+W RD+   IRK   + +++T+++++L   LP 
Sbjct  386  VGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVL---LPW  442

Query  443  LFRNTITVSVVLGTMMSVFIVLLSLYELHQRATHRHSFLSGIFKLSRSHWGMVLAHLGVA  502
            L+ + I     +G  M+  I +L++ E  QR ++         K S S WGMV AHLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT-------KTSLSYWGMVAAHLGLA  495

Query  503  MTVFGIAFSQNFSIERDVRMNVGDKAEILDYQFEFKGIKITDGANYQGGTAELEITRNGK  562
            +T+ GIAFSQN+S+ERDVRM  GD   I DY+F F+ ++   G+NY+GG A + +TR+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  YEATLNAEKRFYTVSRMGMTEAAIDWGFTRDLYAALGEKLEDNSWAVRLYYKPFIRWIWI  622
             EA L+AEKR+Y  SRM MTEAAID G+TRDLYAALGE L++ +WAVRLYYKPF+RWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGLFMALGGLLCMLDKRYRLR  643
            GGL+MALGGLLC+ D RYR R
Sbjct  616  GGLLMALGGLLCLADPRYRRR  636

263) J450_06785 in NC_021738


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  538 bits (2029),  Expect = 6e-154, Method: Compositional matrix adjust.
 Identities = 379/621 (62%), Positives = 496/621 (80%), Gaps = 13/621 (2%)

Query  26   WGAEKQNSTLIALARPMTWAMFLALTVSFGSLFYLFAVNDFTVQYVVNNSNSRLPLQYRL  85
            WG  + ++ ++A A   +W +F+ ++ +F  L   F VNDFTV YV  NSN++LP+ YR+
Sbjct  26   WGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRV  85

Query  86   SAVWGAHEgslllwvwllslwsvgvATFTRKMPEDAVARVLGLMGVIGIGFLMFVIFTSN  145
            +A WGAHEGSLLLWV L+S W+++VA F+R++P D VARVL++MG++  GFL F++FTS 
Sbjct  86   AATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSG  145

Query  146  PFDRTFPNFPIDGKELNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGRLDTAWA  205
            PF RT+P FP++G++LNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLD+A +
Sbjct  146  PFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFT  205

Query  206  RWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWWFWDPVENASLMPWLAGTALIHSLAV  265
            R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWWFWDPVENAS+MPWLAGTAL+HS+AV
Sbjct  206  RFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAV  265

Query  266  TEKRGTFKAWTVLLAILAFSLCLVGTFLVRSGILVSVHAFASDPTRGLYIlaylvlvvgg  325
            TE+R+ FKAWT+LL+I AFSLCL+GTFLVRSG+LVSVHAFASDP+RG++ILA++VLV GG
Sbjct  266  TEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGG  325

Query  326  slllyaFKGSEIKSLDNYERYSRETMLLINNILLMAFLSVVFLGTLLPLIHKQIGLGTIS  385
            SLLL+A +G  ++S  N    SRE++LL NN+LLMA + VV+LGTLLPL+HKQ+GLG+IS
Sbjct  326  SLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSIS  385

Query  386  IGAPFFDQMFLILMVPFSFVLGIGPLVKWRRDQVSAIRK---PVIIATILMALLGFGLPY  442
            +G PFF+ MF  LMVPF+++LG+GPLV+W RD+   IRK   + +++T+++++L   LP 
Sbjct  386  VGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVL---LPW  442

Query  443  LFRNTITVSVVLGTMMSVFIVLLSLYELHQRATHRHSFLSGIFKLSRSHWGMVLAHLGVA  502
            L+ + I     +G  M+  I +L++ E  QR ++         K S S WGMV AHLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT-------KTSLSYWGMVAAHLGLA  495

Query  503  MTVFGIAFSQNFSIERDVRMNVGDKAEILDYQFEFKGIKITDGANYQGGTAELEITRNGK  562
            +T+ GIAFSQN+S+ERDVRM  GD   I DY+F F+ ++   G+NY+GG A + +TR+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  YEATLNAEKRFYTVSRMGMTEAAIDWGFTRDLYAALGEKLEDNSWAVRLYYKPFIRWIWI  622
             EA L+AEKR+Y  SRM MTEAAID G+TRDLYAALGE L++ +WAVRLYYKPF+RWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGLFMALGGLLCMLDKRYRLR  643
            GGL+MALGGLLC+ D RYR R
Sbjct  616  GGLLMALGGLLCLADPRYRRR  636

264) J451_06870 in NC_021739


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  538 bits (2029),  Expect = 6e-154, Method: Compositional matrix adjust.
 Identities = 379/621 (62%), Positives = 496/621 (80%), Gaps = 13/621 (2%)

Query  26   WGAEKQNSTLIALARPMTWAMFLALTVSFGSLFYLFAVNDFTVQYVVNNSNSRLPLQYRL  85
            WG  + ++ ++A A   +W +F+ ++ +F  L   F VNDFTV YV  NSN++LP+ YR+
Sbjct  26   WGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRV  85

Query  86   SAVWGAHEgslllwvwllslwsvgvATFTRKMPEDAVARVLGLMGVIGIGFLMFVIFTSN  145
            +A WGAHEGSLLLWV L+S W+++VA F+R++P D VARVL++MG++  GFL F++FTS 
Sbjct  86   AATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSG  145

Query  146  PFDRTFPNFPIDGKELNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGRLDTAWA  205
            PF RT+P FP++G++LNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLD+A +
Sbjct  146  PFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFT  205

Query  206  RWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWWFWDPVENASLMPWLAGTALIHSLAV  265
            R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWWFWDPVENAS+MPWLAGTAL+HS+AV
Sbjct  206  RFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAV  265

Query  266  TEKRGTFKAWTVLLAILAFSLCLVGTFLVRSGILVSVHAFASDPTRGLYIlaylvlvvgg  325
            TE+R+ FKAWT+LL+I AFSLCL+GTFLVRSG+LVSVHAFASDP+RG++ILA++VLV GG
Sbjct  266  TEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGG  325

Query  326  slllyaFKGSEIKSLDNYERYSRETMLLINNILLMAFLSVVFLGTLLPLIHKQIGLGTIS  385
            SLLL+A +G  ++S  N    SRE++LL NN+LLMA + VV+LGTLLPL+HKQ+GLG+IS
Sbjct  326  SLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSIS  385

Query  386  IGAPFFDQMFLILMVPFSFVLGIGPLVKWRRDQVSAIRK---PVIIATILMALLGFGLPY  442
            +G PFF+ MF  LMVPF+++LG+GPLV+W RD+   IRK   + +++T+++++L   LP 
Sbjct  386  VGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVL---LPW  442

Query  443  LFRNTITVSVVLGTMMSVFIVLLSLYELHQRATHRHSFLSGIFKLSRSHWGMVLAHLGVA  502
            L+ + I     +G  M+  I +L++ E  QR ++         K S S WGMV AHLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT-------KTSLSYWGMVAAHLGLA  495

Query  503  MTVFGIAFSQNFSIERDVRMNVGDKAEILDYQFEFKGIKITDGANYQGGTAELEITRNGK  562
            +T+ GIAFSQN+S+ERDVRM  GD   I DY+F F+ ++   G+NY+GG A + +TR+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  YEATLNAEKRFYTVSRMGMTEAAIDWGFTRDLYAALGEKLEDNSWAVRLYYKPFIRWIWI  622
             EA L+AEKR+Y  SRM MTEAAID G+TRDLYAALGE L++ +WAVRLYYKPF+RWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGLFMALGGLLCMLDKRYRLR  643
            GGL+MALGGLLC+ D RYR R
Sbjct  616  GGLLMALGGLLCLADPRYRRR  636

265) ccmF1 in NC_021082


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  538 bits (2029),  Expect = 6e-154, Method: Compositional matrix adjust.
 Identities = 379/621 (62%), Positives = 496/621 (80%), Gaps = 13/621 (2%)

Query  26   WGAEKQNSTLIALARPMTWAMFLALTVSFGSLFYLFAVNDFTVQYVVNNSNSRLPLQYRL  85
            WG  + ++ ++A A   +W +F+ ++ +F  L   F VNDFTV YV  NSN++LP+ YR+
Sbjct  26   WGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRV  85

Query  86   SAVWGAHEgslllwvwllslwsvgvATFTRKMPEDAVARVLGLMGVIGIGFLMFVIFTSN  145
            +A WGAHEGSLLLWV L+S W+++VA F+R++P D VARVL++MG++  GFL F++FTS 
Sbjct  86   AATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSG  145

Query  146  PFDRTFPNFPIDGKELNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGRLDTAWA  205
            PF RT+P FP++G++LNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLD+A +
Sbjct  146  PFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFT  205

Query  206  RWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWWFWDPVENASLMPWLAGTALIHSLAV  265
            R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWWFWDPVENAS+MPWLAGTAL+HS+AV
Sbjct  206  RFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAV  265

Query  266  TEKRGTFKAWTVLLAILAFSLCLVGTFLVRSGILVSVHAFASDPTRGLYIlaylvlvvgg  325
            TE+R+ FKAWT+LL+I AFSLCL+GTFLVRSG+LVSVHAFASDP+RG++ILA++VLV GG
Sbjct  266  TEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGG  325

Query  326  slllyaFKGSEIKSLDNYERYSRETMLLINNILLMAFLSVVFLGTLLPLIHKQIGLGTIS  385
            SLLL+A +G  ++S  N    SRE++LL NN+LLMA + VV+LGTLLPL+HKQ+GLG+IS
Sbjct  326  SLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSIS  385

Query  386  IGAPFFDQMFLILMVPFSFVLGIGPLVKWRRDQVSAIRK---PVIIATILMALLGFGLPY  442
            +G PFF+ MF  LMVPF+++LG+GPLV+W RD+   IRK   + +++T+++++L   LP 
Sbjct  386  VGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVL---LPW  442

Query  443  LFRNTITVSVVLGTMMSVFIVLLSLYELHQRATHRHSFLSGIFKLSRSHWGMVLAHLGVA  502
            L+ + I     +G  M+  I +L++ E  QR ++         K S S WGMV AHLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT-------KTSLSYWGMVAAHLGLA  495

Query  503  MTVFGIAFSQNFSIERDVRMNVGDKAEILDYQFEFKGIKITDGANYQGGTAELEITRNGK  562
            +T+ GIAFSQN+S+ERDVRM  GD   I DY+F F+ ++   G+NY+GG A + +TR+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  YEATLNAEKRFYTVSRMGMTEAAIDWGFTRDLYAALGEKLEDNSWAVRLYYKPFIRWIWI  622
             EA L+AEKR+Y  SRM MTEAAID G+TRDLYAALGE L++ +WAVRLYYKPF+RWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGLFMALGGLLCMLDKRYRLR  643
            GGL+MALGGLLC+ D RYR R
Sbjct  616  GGLLMALGGLLCLADPRYRRR  636

266) D648_23410 in NC_020834


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  538 bits (2029),  Expect = 6e-154, Method: Compositional matrix adjust.
 Identities = 379/621 (62%), Positives = 496/621 (80%), Gaps = 13/621 (2%)

Query  26   WGAEKQNSTLIALARPMTWAMFLALTVSFGSLFYLFAVNDFTVQYVVNNSNSRLPLQYRL  85
            WG  + ++ ++A A   +W +F+ ++ +F  L   F VNDFTV YV  NSN++LP+ YR+
Sbjct  26   WGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRV  85

Query  86   SAVWGAHEgslllwvwllslwsvgvATFTRKMPEDAVARVLGLMGVIGIGFLMFVIFTSN  145
            +A WGAHEGSLLLWV L+S W+++VA F+R++P D VARVL++MG++  GFL F++FTS 
Sbjct  86   AATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSG  145

Query  146  PFDRTFPNFPIDGKELNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGRLDTAWA  205
            PF RT+P FP++G++LNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLD+A +
Sbjct  146  PFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFT  205

Query  206  RWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWWFWDPVENASLMPWLAGTALIHSLAV  265
            R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWWFWDPVENAS+MPWLAGTAL+HS+AV
Sbjct  206  RFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAV  265

Query  266  TEKRGTFKAWTVLLAILAFSLCLVGTFLVRSGILVSVHAFASDPTRGLYIlaylvlvvgg  325
            TE+R+ FKAWT+LL+I AFSLCL+GTFLVRSG+LVSVHAFASDP+RG++ILA++VLV GG
Sbjct  266  TEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGG  325

Query  326  slllyaFKGSEIKSLDNYERYSRETMLLINNILLMAFLSVVFLGTLLPLIHKQIGLGTIS  385
            SLLL+A +G  ++S  N    SRE++LL NN+LLMA + VV+LGTLLPL+HKQ+GLG+IS
Sbjct  326  SLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSIS  385

Query  386  IGAPFFDQMFLILMVPFSFVLGIGPLVKWRRDQVSAIRK---PVIIATILMALLGFGLPY  442
            +G PFF+ MF  LMVPF+++LG+GPLV+W RD+   IRK   + +++T+++++L   LP 
Sbjct  386  VGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVL---LPW  442

Query  443  LFRNTITVSVVLGTMMSVFIVLLSLYELHQRATHRHSFLSGIFKLSRSHWGMVLAHLGVA  502
            L+ + I     +G  M+  I +L++ E  QR ++         K S S WGMV AHLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT-------KTSLSYWGMVAAHLGLA  495

Query  503  MTVFGIAFSQNFSIERDVRMNVGDKAEILDYQFEFKGIKITDGANYQGGTAELEITRNGK  562
            +T+ GIAFSQN+S+ERDVRM  GD   I DY+F F+ ++   G+NY+GG A + +TR+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  YEATLNAEKRFYTVSRMGMTEAAIDWGFTRDLYAALGEKLEDNSWAVRLYYKPFIRWIWI  622
             EA L+AEKR+Y  SRM MTEAAID G+TRDLYAALGE L++ +WAVRLYYKPF+RWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGLFMALGGLLCMLDKRYRLR  643
            GGL+MALGGLLC+ D RYR R
Sbjct  616  GGLLMALGGLLCLADPRYRRR  636

267) D650_2770 in NC_020833


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  538 bits (2029),  Expect = 6e-154, Method: Compositional matrix adjust.
 Identities = 379/621 (62%), Positives = 496/621 (80%), Gaps = 13/621 (2%)

Query  26   WGAEKQNSTLIALARPMTWAMFLALTVSFGSLFYLFAVNDFTVQYVVNNSNSRLPLQYRL  85
            WG  + ++ ++A A   +W +F+ ++ +F  L   F VNDFTV YV  NSN++LP+ YR+
Sbjct  26   WGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRV  85

Query  86   SAVWGAHEgslllwvwllslwsvgvATFTRKMPEDAVARVLGLMGVIGIGFLMFVIFTSN  145
            +A WGAHEGSLLLWV L+S W+++VA F+R++P D VARVL++MG++  GFL F++FTS 
Sbjct  86   AATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSG  145

Query  146  PFDRTFPNFPIDGKELNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGRLDTAWA  205
            PF RT+P FP++G++LNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLD+A +
Sbjct  146  PFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFT  205

Query  206  RWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWWFWDPVENASLMPWLAGTALIHSLAV  265
            R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWWFWDPVENAS+MPWLAGTAL+HS+AV
Sbjct  206  RFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAV  265

Query  266  TEKRGTFKAWTVLLAILAFSLCLVGTFLVRSGILVSVHAFASDPTRGLYIlaylvlvvgg  325
            TE+R+ FKAWT+LL+I AFSLCL+GTFLVRSG+LVSVHAFASDP+RG++ILA++VLV GG
Sbjct  266  TEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGG  325

Query  326  slllyaFKGSEIKSLDNYERYSRETMLLINNILLMAFLSVVFLGTLLPLIHKQIGLGTIS  385
            SLLL+A +G  ++S  N    SRE++LL NN+LLMA + VV+LGTLLPL+HKQ+GLG+IS
Sbjct  326  SLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSIS  385

Query  386  IGAPFFDQMFLILMVPFSFVLGIGPLVKWRRDQVSAIRK---PVIIATILMALLGFGLPY  442
            +G PFF+ MF  LMVPF+++LG+GPLV+W RD+   IRK   + +++T+++++L   LP 
Sbjct  386  VGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVL---LPW  442

Query  443  LFRNTITVSVVLGTMMSVFIVLLSLYELHQRATHRHSFLSGIFKLSRSHWGMVLAHLGVA  502
            L+ + I     +G  M+  I +L++ E  QR ++         K S S WGMV AHLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT-------KTSLSYWGMVAAHLGLA  495

Query  503  MTVFGIAFSQNFSIERDVRMNVGDKAEILDYQFEFKGIKITDGANYQGGTAELEITRNGK  562
            +T+ GIAFSQN+S+ERDVRM  GD   I DY+F F+ ++   G+NY+GG A + +TR+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  YEATLNAEKRFYTVSRMGMTEAAIDWGFTRDLYAALGEKLEDNSWAVRLYYKPFIRWIWI  622
             EA L+AEKR+Y  SRM MTEAAID G+TRDLYAALGE L++ +WAVRLYYKPF+RWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGLFMALGGLLCMLDKRYRLR  643
            GGL+MALGGLLC+ D RYR R
Sbjct  616  GGLLMALGGLLCLADPRYRRR  636

268) N220_12835 in NC_021883


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  538 bits (2029),  Expect = 6e-154, Method: Compositional matrix adjust.
 Identities = 379/621 (62%), Positives = 496/621 (80%), Gaps = 13/621 (2%)

Query  26   WGAEKQNSTLIALARPMTWAMFLALTVSFGSLFYLFAVNDFTVQYVVNNSNSRLPLQYRL  85
            WG  + ++ ++A A   +W +F+ ++ +F  L   F VNDFTV YV  NSN++LP+ YR+
Sbjct  26   WGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRV  85

Query  86   SAVWGAHEgslllwvwllslwsvgvATFTRKMPEDAVARVLGLMGVIGIGFLMFVIFTSN  145
            +A WGAHEGSLLLWV L+S W+++VA F+R++P D VARVL++MG++  GFL F++FTS 
Sbjct  86   AATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSG  145

Query  146  PFDRTFPNFPIDGKELNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGRLDTAWA  205
            PF RT+P FP++G++LNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLD+A +
Sbjct  146  PFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFT  205

Query  206  RWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWWFWDPVENASLMPWLAGTALIHSLAV  265
            R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWWFWDPVENAS+MPWLAGTAL+HS+AV
Sbjct  206  RFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAV  265

Query  266  TEKRGTFKAWTVLLAILAFSLCLVGTFLVRSGILVSVHAFASDPTRGLYIlaylvlvvgg  325
            TE+R+ FKAWT+LL+I AFSLCL+GTFLVRSG+LVSVHAFASDP+RG++ILA++VLV GG
Sbjct  266  TEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGG  325

Query  326  slllyaFKGSEIKSLDNYERYSRETMLLINNILLMAFLSVVFLGTLLPLIHKQIGLGTIS  385
            SLLL+A +G  ++S  N    SRE++LL NN+LLMA + VV+LGTLLPL+HKQ+GLG+IS
Sbjct  326  SLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSIS  385

Query  386  IGAPFFDQMFLILMVPFSFVLGIGPLVKWRRDQVSAIRK---PVIIATILMALLGFGLPY  442
            +G PFF+ MF  LMVPF+++LG+GPLV+W RD+   IRK   + +++T+++++L   LP 
Sbjct  386  VGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVL---LPW  442

Query  443  LFRNTITVSVVLGTMMSVFIVLLSLYELHQRATHRHSFLSGIFKLSRSHWGMVLAHLGVA  502
            L+ + I     +G  M+  I +L++ E  QR ++         K S S WGMV AHLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT-------KTSLSYWGMVAAHLGLA  495

Query  503  MTVFGIAFSQNFSIERDVRMNVGDKAEILDYQFEFKGIKITDGANYQGGTAELEITRNGK  562
            +T+ GIAFSQN+S+ERDVRM  GD   I DY+F F+ ++   G+NY+GG A + +TR+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  YEATLNAEKRFYTVSRMGMTEAAIDWGFTRDLYAALGEKLEDNSWAVRLYYKPFIRWIWI  622
             EA L+AEKR+Y  SRM MTEAAID G+TRDLYAALGE L++ +WAVRLYYKPF+RWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGLFMALGGLLCMLDKRYRLR  643
            GGL+MALGGLLC+ D RYR R
Sbjct  616  GGLLMALGGLLCLADPRYRRR  636

269) vfu_A01267 in NC_016602


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  534 bits (2016),  Expect = 6e-153, Method: Compositional matrix adjust.
 Identities = 388/606 (65%), Positives = 488/606 (81%), Gaps = 8/606 (1%)

Query  46   MFLMLALSFGILLWAFYTNDFTLQYVASNSNSQLPWYYRLTAVWGAHEGSLLLWVLIQAA  105
            +F+ +A +F +L+ AF  NDFT+ YVA+NSN+QLP  YR++A WGAHEGSLLLWVL+ ++
Sbjct  46   LFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSG  105

Query  106  WTLAVATLSRGMPQESVARVLAVMGLISVGFLLFIIVTSNPFTRTLPYFPVDGRDLNPLL  165
            WTLAVA +SR +P + VARVLAVMG++  GFL FI+ TS PF+RTLP FPV+GRDLNPLL
Sbjct  106  WTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLL  165

Query  166  QDPGLIIHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWARWSRPWTTAAWLFLTLGIAL  225
            QDPGLI+HPP+LYMGYVGFSVAF+FAIA+L++GRLD+A +R +RPWT AAW+FLTLGI L
Sbjct  166  QDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVL  225

Query  226  GSWWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVllaisafs  285
            GS WAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS+AVTE+R+ FKAWT+LL+I AFS
Sbjct  226  GSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFS  285

Query  286  lsllGTFLVRSGILVSVHAFASDPARGMFILAFLVFVIGGSLLLFALKGSSVRVRGNFEL  345
            L LLGTFLVRSG+LVSVHAFASDPARGMFILAF+V+V GGSLLLFA++G  VR R N  L
Sbjct  286  LCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNAL  345

Query  346  VSREnallannvlliaalvvvliGTLLPLVHKQLGLGSVSIGAPFFNTLFAWLMVPFAFL  405
             SRE+ LL+NNVLL+AA++VVL+GTLLPLVHKQLGLGS+S+G PFFNT+F+WLMVPFA+L
Sbjct  346  WSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALL  405

Query  406  LGIGPLIRWKRDNLSKLIKPMLISGVISLLLGALIVQLTTEHFSAMAYMGWVMALWIVCL  465
            LG+GPL+RW RD   ++ K +  + V +L+L+ L+  L  + + AM+ +G  MA WI  L
Sbjct  406  LGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVL  465

Query  466  HGVELYERATHRHTFFEGIGKLQRSHWSMMLGHMGLAVTIIGIAMVQNYSIERDVRLAPG  525
               E  +R ++         K   S W+M+ +H+GLAVTI GIA  QNYS+ERDVR+ +G
Sbjct  466  AVAEAVQRVSRG-------TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAG  518

Query  526  EHFKMQQYEFYFKGLRDKDGPNYDGYIADFEITHHGKYLNTLHAEKRFYRTARSMMTEAA  585
            +   +++Y F F+ +RD  GPNY G +A + +T+HG     LHAEKR+Y T+R +MTEAA
Sbjct  519  DSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAA  578

Query  586  IDRGLTRDLYIAMGERLDDNNAWAVRIYYKPFVRWiwagallmaiggalaiSDKRYRFRK  645
            ID GLTRDLY A+GE LD+  AWAVR+YYKPFVRWIWAG+LLMA+GG L ++D RYR RK
Sbjct  579  IDGGLTRDLYAALGEELDN-GAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

Query  646  NAQQEA  651
               + +
Sbjct  638  PLPEAG  643

270) HSM_0723 in NC_010519


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  534 bits (2014),  Expect = 9e-153, Method: Compositional matrix adjust.
 Identities = 390/627 (63%), Positives = 506/627 (81%), Gaps = 7/627 (1%)

Query  23   FPLWGAEKGNVQMMALARPMTYGLFVSLTVSFVALFYLFLTNDFSVQYVVNNSNTNLPLQ  82
            +PLWG  +G+ +MMA A   +  LF+ ++ +F  L   F+ NDF+V YV  NSNT+LP+ 
Sbjct  23   YPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVW  82

Query  83   YRLSAVWGSHEGSlllwiwlltlwSAAVAFLSKQLPQEAVARVLAIMGIITIGFLLFVMF  142
            YR++A WG+HEGSLLLW+ L++ W+ AVA +S+Q+P + VARVLA+MG++  GFL F++F
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  143  TSNPFDRTFPDFPVEGRELNPLLQDIGLIFHPPLLYMGYVGFSVAFAFAIASLMTGKLDT  202
            TS PF RT+P FPVEGR+LNPLLQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++G+LD+
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  203  AWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWWFWDPVENASLMPWLAGTALLHS  262
            A +R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWWFWDPVENAS+MPWLAGTALLHS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  263  LAVTEKRGSFKAWTVllailafslcllGTFLVRSGILVSVHAFASDPTRGLYILAYLIVV  322
            +AVTE+R++FKAWT+LL+I AFSLCLLGTFLVRSG+LVSVHAFASDP+RG++ILA++++V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  323  IGGSLALYAYKGNLIRTRNNAERYSRETMLLINNILLMTALSVVFLGTLLPLVHKQLGLG  382
             GGSL L+A +G+ +R+R N    SRE++LL NN+LLM+A+ VV+LGTLLPLVHKQLGLG
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  383  TISIGSPFFDQMFllimiplslllgvgplvKWRRDQFCAIRLPVIISLVIMLITGFVLPY  442
            +IS+G PFF+ MF  +M+P++LLLGVGPLV+W RD+   IR  +  ++V  L+ + +LP 
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  443  FLQDRITVSAVLGVMMAMFILLLALYELQQRATHKHSFWIGITKLSRSHWGMVLAHLGVA  502
            +L+D+I   + +G+ MA  I +LA+ E  QR ++        TK S S WGMV AHLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG-------TKTSLSYWGMVAAHLGLA  495

Query  503  MTIWGIAFSQNYSIERDVRMNVGDTVKIADYEFTFQGISDVNGVNYLGGKAQIDISRNGK  562
            +TI GIAFSQNYS+ERDVRM  GD+V I DY FTF+ + D+ G NY GG A I+++R+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  FETTLFAEKRFYTVSKMTMTEAAIDWGLSRDLYVALGESLNDGSWALRLYYKPFIRWIWL  622
             E+ L AEKR+Y  S+M MTEAAID GL+RDLY ALGE L++G+WA+RLYYKPF+RWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGIFMAFGGLLCIFDRRYRFGKLLKQG  649
            GG++MA+GGLLC+ D RYR  K L ++
Sbjct  616  GGLLMALGGLLCLADPRYRRRKPLPEA  642

271) WQG_16740 in NC_020515


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  533 bits (2013),  Expect = 1e-152, Method: Compositional matrix adjust.
 Identities = 377/599 (63%), Positives = 479/599 (80%), Gaps = 13/599 (2%)

Query  26   WGAEKNNHTLISLVRPMTWAVFLALTVSFGSLFYLFAVNDFTVQYVVNNSNSTLPIEYRL  85
            WG  + +  +++     +W +F+ ++ +F  L   F VNDFTV YV  NSN+ LP+ YR+
Sbjct  26   WGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRV  85

Query  86   SAVWGSHEGslllwiwllslwsVAVASFSRQMPEESVARVLAVMGLVSIGFLIFIIFTSN  145
            +A WG+HEGSLLLW+ L+S W++AVA FSRQ+P + VARVLAVMG+V  GFL FI+FTS 
Sbjct  86   AATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSG  145

Query  146  PFDRTFPNFPVDGRELNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGRLDTAWA  205
            PF RT+P FPV+GR+LNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLD+A +
Sbjct  146  PFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFT  205

Query  206  RWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWWFWDPVENASLMPWIAGTALIHSLAV  265
            R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWWFWDPVENAS+MPW+AGTAL+HS+AV
Sbjct  206  RFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAV  265

Query  266  TEKRSTFKAWTVllailafslcllGTFLVRSGILVSVHAFASDPTRGLYILAYLVIVIGG  325
            TE+R+ FKAWT+LL+I AFSLCLLGTFLVRSG+LVSVHAFASDP+RG++ILA++V+V GG
Sbjct  266  TEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGG  325

Query  326  SLLLYAYQGNKIKSLDnserysresllllnnillMAFLSVVFLGTILPLIHKQIGLGTIS  385
            SLLL+A +G++++S  N+   SRESLLL NN+LLMA + VV+LGT+LPL+HKQ+GLG+IS
Sbjct  326  SLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSIS  385

Query  386  IGAPFFDQMFMILMVPFAFLLGVGPLVKWRRDQFSAIRK---PVIISTLLMAVLGFALPY  442
            +G PFF+ MF  LMVPFA+LLGVGPLV+W RD+   IRK   + +++TL+++VL   LP 
Sbjct  386  VGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVL---LPW  442

Query  443  LFASKITVSVVLGTMMAVIIIALSLYELHQRATHRHSFVQGLFKLSRSHWGMVLAHLGVA  502
            L+  KI     +G  MA  I  L++ E  QR ++         K S S WGMV AHLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT-------KTSLSYWGMVAAHLGLA  495

Query  503  MTVFGIAFSQNFSIEKDVRMNVGDKTQILDYEFTFKGIRDSNGANYIGGTADIEITRNGK  562
            +T+ GIAFSQN+S+E+DVRM  GD   I DY FTF+ +RD  G+NY GG A I +TR+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  YEATLEAEKRFYNVSKMGMTEAAIDWGFTRDLYAALGERLEDGSWGVRLYYKPFIRWIW  621
             EA L+AEKR+YN S+M MTEAAID G+TRDLYAALGE L++G+W+VRLYYKPF+RWIW
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

272) D7S_01940 in NC_017846


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  532 bits (2007),  Expect = 3e-152, Method: Compositional matrix adjust.
 Identities = 392/629 (63%), Positives = 498/629 (80%), Gaps = 7/629 (1%)

Query  22   IFPLWGAEKGNAQLMSLARPMTYGLFFVLTFSFGALFYLFAVNDFSVQYVVNNSNTTLPI  81
            ++PLWG  +G+A++M+ A   +  LF+ ++ +F  L   F VNDF+V YV  NSNT LP+
Sbjct  22   VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   YYRLSAVWGSHEGslllwiwllslwGAAVALFSKHLPQEATARVLGIMGIISIGFLLFVL  141
             YR++A WG+HEGSLLLW+ L+S W  AVA+FS+++P +  ARVL++MG++  GFL F+L
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  FTSNPFNRTFPDFPVDGKELNPLLQDVGLIFHPPLLYMGYVGFSVAFAFSIASLMTGKLD  201
            FTS PF RT+P FPV+G++LNPLLQD GLIFHPPLLYMGYVGFSVAFAF+IA+L++G+LD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  202  TAWARWSRPWTMAAWIFLTLGIVLGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261
            +A +R +RPWT+AAW+FLTLGIVLGS WAYYELGWGGWWFWDPVENASFMPWLAGTALLH
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  262  SLAVTEKRGSFKAWTVllailafslcllGTFLVRSGILVSVHAFASDPIRGLYVLAYLIV  321
            S+AVTE+R++FKAWT+LL+I AFSLCLLGTFLVRSG+LVSVHAFASDP RG+++LA++++
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  322  VIGGSLTLYAYKGSQIRSRDNAERYSRESllllnnillMTAlcvvllgtllplvHKQLGL  381
            V GGSL L+A +G ++RSR N    SRESLLL NN+LLM+A+ VVLLGTLLPLVHKQLGL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  382  GSISIGAPFFDQMFLIIMTPFALLLGIGPLVKWRRDQFSAIRTPLIVSLVIMLIAGFALP  441
            GSIS+G PFF+ MF  +M PFALLLG+GPLV+W RD+   IR  L  ++V  L+ +  LP
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLP  441

Query  442  YALQNKLTISAVLGTMMSVIIVLLSLYEMQQRATHRESFWRGITKLSRSHWGMILAHLGV  501
              L++K+   + +G  M+  I +L++ E  QR +      RG TK S S WGM+ AHLG+
Sbjct  442  WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG-TKTSLSYWGMVAAHLGL  494

Query  502  AMTVWGIAFSQNYSVERDVRMHVGDTVQIAGYDFTFKGISDANGPNYIGGKAQIDIHRDG  561
            A+T+ GIAFSQNYSVERDVRM+ GD+V I +Y FTF+ + D  GPNY GG A I++ R+G
Sbjct  495  AVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  562  KKETTLYAEKRLYTVSKMPMTEAAIDWGFSRDLYVALGEKLDDNSWALRLYYKPFIRWIW  621
              E+ L AEKRLY  S+M MTEAAID G++RDLY ALGE LD+ +WA+RLYYKPF+RWIW
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

Query  622  LGGLFMVLGGILCLFDRRYRFSKILGKET  650
             GGL+M LGG+LCL D RYR  K L    
Sbjct  615  AGGLLMALGGLLCLADPRYRRRKPLPEAG  643

273) ccmF in NC_008309


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  532 bits (2006),  Expect = 4e-152, Method: Compositional matrix adjust.
 Identities = 389/627 (63%), Positives = 504/627 (81%), Gaps = 7/627 (1%)

Query  23   FPLWGAEKGNVQMMALARPMTYGLFVSLTVSFVALFYLFLTNDFSVQYVVNNSNTNLPLQ  82
            +PLWG  +G+ +MMA A   +  LF+ ++ +F  L   F+ NDF+V YV  NSNT+LP+ 
Sbjct  23   YPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVW  82

Query  83   YRLSAVWGSHEGSlllwiwlltlwSAAVAFLSKQLPQEAVARVLAIMGIITIGFLLFVMF  142
            YR++A WG+HEGSLLLW+ L++ W+ AVA +S+Q+P + VARVLA+MG++  GFL F++F
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  143  TSNPFDRTFPDFPVEGRELNPLLQDIGLIFHPPLLYMGYVGFSVAFAFAIASLMTGKLDT  202
            TS PF RT+P FPVEGR+LNPLLQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++G+LD+
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  203  AWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWWFWDPVENASLMPWLAGTALLHS  262
            A +R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWWFWDPVENAS+MPWLAGTALLHS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  263  LAVTEKRGSFKAWTVllailafslcllGTFLVRSGILVSVHAFASDPTRGLYILAYLIVV  322
            +AVTE+R++FKAWT+LL+I AFSLCLLGTFLVRSG+LVSVHAFASDP+RG++ILA++++V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  323  IGGSLALYAYKGNLIRTRNNAERYSRETMLLINNILLMTALSVVFLGTLLPLVHKQLGLG  382
             GGSL L+A +G+ +R+R N    SRE++LL NN+LLM+A+ VV+LGTLLPLVHKQLGLG
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  383  TISIGSPFFDQMFllimiplslllgvgplvKWRRDQFCAIRLPVIISSIIMLITGFVLPY  442
            +IS+G PFF+ MF  +M+P++LLLGVGPLV+W RD+   IR  +  + +  L+ + +LP 
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  443  FLQDRIAVSAVLGVMMAMFILLLALYELQQRATHKHSFWIGITKLSRSHWGMVLAHLGVA  502
            +L+D+I   + +G+ MA  I +LA+ E  QR ++        TK S S WGMV AHLG+A
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG-------TKTSLSYWGMVAAHLGLA  495

Query  503  MTIWGIAFSQNYSIERDVRMNVGDTVKIADYEFTFQGISDANGVNYLGGKAQIDISRNGK  562
            +TI GIAFSQNYS+ERDVRM  GD+V I DY FTF+ + D  G NY GG A I+++R+G 
Sbjct  496  VTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGE  555

Query  563  FETTLFAEKRFYTVSKMTMTEAAIDWGLSRDLYVALGESLNDGSWALRLYYKPFIRWIWL  622
             E+ L AEKR+Y  S+M MTEAAID GL+RDLY ALGE L++G+WA+RLYYKPF+RWIW 
Sbjct  556  PEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

Query  623  GGIFMAFGGLLCIFDRRYRFGKLLKQG  649
            GG++MA+GGLLC+ D RYR  K L ++
Sbjct  616  GGLLMALGGLLCLADPRYRRRKPLPEA  642

274) N175_05710 in NC_022223


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  532 bits (2006),  Expect = 4e-152, Method: Compositional matrix adjust.
 Identities = 383/623 (62%), Positives = 503/623 (81%), Gaps = 8/623 (1%)

Query  29   SKNNTMLMNTARPLAWGMfslllvsfsillWAFYVNDFTVQYVASNSNSQLPWYYRLTAV  88
            ++ ++ +M +A  +AW +F  +  +F +L+ AF VNDFTV YVA+NSN+QLP  YR++A 
Sbjct  29   ARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAAT  88

Query  89   WGAHEGSLLLWVLIQAGWTVAVATFSRGMPQESVARVLSVMGLISVGFLLFVIVTSNPFL  148
            WGAHEGSLLLWVL+ +GWT+AVA FSR +P + VARVL+VMG++  GFL F++ TS PF 
Sbjct  89   WGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFA  148

Query  149  RTLPYFPIDGRDLNPLLQDPGLIIHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWARWS  208
            RTLP FP++GRDLNPLLQDPGLI+HPP+LYMGYVGFSVAF+FAIA+L++GRLD+A +R +
Sbjct  149  RTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFA  208

Query  209  RPWTTAAWLFLTLGIALGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAVTEK  268
            RPWT AAW+FLTLGI LGS WAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS+AVTE+
Sbjct  209  RPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQ  268

Query  269  RGTFKAWTVllaisafslsllGTFLVRSGILVSVHAFASDPARGLFILGFLVFVIGGSLL  328
            R+ FKAWT+LL+I AFSL LLGTFLVRSG+LVSVHAFASDPARG+FIL+F+V+V GGSLL
Sbjct  269  RAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLL  328

Query  329  LFAVKGAAVRVRGNAELISREnallsnnilliaalvvvlvgtllpliHKQIGLGSVSIGA  388
            LFAV+G  VR R N  L SRE+ LL+NN+LL+AA++VVL+GTLLPL+HKQ+GLGS+S+G 
Sbjct  329  LFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGE  388

Query  389  PFFNMLFAWLMVPFAFLLGIGPLIRWKRDNFSKLLKPMLICGLMALIFSAVMVYLLAERF  448
            PFFN +F+WLMVPFA+LLG+GPL+RW RD   ++ K +    + +L++S ++  LL +++
Sbjct  389  PFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKI  448

Query  449  SLMAFIGWVMAFWIILLHVVELHQRATHRHSFMIGVTKLQRSHWAMMLGHVGLAVTVIGI  508
              M+ +G  MA WI +L V E  QR ++        TK   S W+M+ +H+GLAVT+ GI
Sbjct  449  IAMTAVGMAMACWIAVLAVAEAVQRVSR-------GTKTSLSYWGMVAAHLGLAVTITGI  501

Query  509  AMVQNYSIERDVRLAPGESFEIQQYNFYFKGLRDKDGPNYDGYIADFEITQDGQYVNTLH  568
            A  QNYS+ERDVR+ +G+S  I++Y F F+ +RD  GPNY G +A + +T++G+    LH
Sbjct  502  AFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLH  561

Query  569  AEKRFYRTAKSMMTEAAIDRGITRDLYIAMGERLEDGRSWAIRIYYKPFVRWIWagallm  628
            AEKR+Y T++ +MTEAAID G+TRDLY A+GE L++G +WA+R+YYKPFVRWIWAG+LLM
Sbjct  562  AEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG-AWAVRLYYKPFVRWIWAGGLLM  620

Query  629  slggalaISDKRYRFRKSSQQEA  651
            +LGG L ++D RYR RK+  + +
Sbjct  621  ALGGLLCLADPRYRRRKPLPEAG  643

275) VAA_03375 in NC_015633


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  532 bits (2006),  Expect = 4e-152, Method: Compositional matrix adjust.
 Identities = 383/623 (62%), Positives = 503/623 (81%), Gaps = 8/623 (1%)

Query  29   SKNNTMLMNTARPLAWGMfslllvsfsillWAFYVNDFTVQYVASNSNSQLPWYYRLTAV  88
            ++ ++ +M +A  +AW +F  +  +F +L+ AF VNDFTV YVA+NSN+QLP  YR++A 
Sbjct  29   ARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAAT  88

Query  89   WGAHEGSLLLWVLIQAGWTVAVATFSRGMPQESVARVLSVMGLISVGFLLFVIVTSNPFL  148
            WGAHEGSLLLWVL+ +GWT+AVA FSR +P + VARVL+VMG++  GFL F++ TS PF 
Sbjct  89   WGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFA  148

Query  149  RTLPYFPIDGRDLNPLLQDPGLIIHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWARWS  208
            RTLP FP++GRDLNPLLQDPGLI+HPP+LYMGYVGFSVAF+FAIA+L++GRLD+A +R +
Sbjct  149  RTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFA  208

Query  209  RPWTTAAWLFLTLGIALGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAVTEK  268
            RPWT AAW+FLTLGI LGS WAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS+AVTE+
Sbjct  209  RPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQ  268

Query  269  RGTFKAWTVllaisafslsllGTFLVRSGILVSVHAFASDPARGLFILGFLVFVIGGSLL  328
            R+ FKAWT+LL+I AFSL LLGTFLVRSG+LVSVHAFASDPARG+FIL+F+V+V GGSLL
Sbjct  269  RAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLL  328

Query  329  LFAVKGAAVRVRGNAELISREnallsnnilliaalvvvlvgtllpliHKQIGLGSVSIGA  388
            LFAV+G  VR R N  L SRE+ LL+NN+LL+AA++VVL+GTLLPL+HKQ+GLGS+S+G 
Sbjct  329  LFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGE  388

Query  389  PFFNMLFAWLMVPFAFLLGIGPLIRWKRDNFSKLLKPMLICGLMALIFSAVMVYLLAERF  448
            PFFN +F+WLMVPFA+LLG+GPL+RW RD   ++ K +    + +L++S ++  LL +++
Sbjct  389  PFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKI  448

Query  449  SLMAFIGWVMAFWIILLHVVELHQRATHRHSFMIGVTKLQRSHWAMMLGHVGLAVTVIGI  508
              M+ +G  MA WI +L V E  QR ++        TK   S W+M+ +H+GLAVT+ GI
Sbjct  449  IAMTAVGMAMACWIAVLAVAEAVQRVSR-------GTKTSLSYWGMVAAHLGLAVTITGI  501

Query  509  AMVQNYSIERDVRLAPGESFEIQQYNFYFKGLRDKDGPNYDGYIADFEITQDGQYVNTLH  568
            A  QNYS+ERDVR+ +G+S  I++Y F F+ +RD  GPNY G +A + +T++G+    LH
Sbjct  502  AFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLH  561

Query  569  AEKRFYRTAKSMMTEAAIDRGITRDLYIAMGERLEDGRSWAIRIYYKPFVRWIWagallm  628
            AEKR+Y T++ +MTEAAID G+TRDLY A+GE L++G +WA+R+YYKPFVRWIWAG+LLM
Sbjct  562  AEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG-AWAVRLYYKPFVRWIWAGGLLM  620

Query  629  slggalaISDKRYRFRKSSQQEA  651
            +LGG L ++D RYR RK+  + +
Sbjct  621  ALGGLLCLADPRYRRRKPLPEAG  643

276) ccmF in NC_004459


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  532 bits (2006),  Expect = 4e-152, Method: Compositional matrix adjust.
 Identities = 383/621 (62%), Positives = 495/621 (80%), Gaps = 8/621 (1%)

Query  26   WGASNNNTMLMNSARPLSWAMFIMLFISFIVLSYGFYANDFTLQYVASNSNSQLPWYYRL  85
            WG +  ++ +M SA  ++W +FI +  +F+VL  +F  NDFT+ YVA+NSN+QLP  YR+
Sbjct  26   WGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRV  85

Query  86   TAVWGAHEGSLLLWVLIQAAWTVAVATFSRGMPQESVARVLAVMGMISVGFLLFIIVTSN  145
            +A WGAHEGSLLLWVL+ ++WT+AVA FSR +P + VARVLAVMGM+  GFL FI+ TS 
Sbjct  86   AATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSG  145

Query  146  PFLRTLPFFPVDGRDLNPLLQDPGLIVHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWA  205
            PF RTLP FPV+GRDLNPLLQDPGLI HPP+LYMGYVGFSVAF+FAIA+L++GRLD+A +
Sbjct  146  PFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFT  205

Query  206  RWSRPWTTAAWVFLTLGIALGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAV  265
            R +RPWT AAWVFLTLGI LGS WAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS+AV
Sbjct  206  RFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAV  265

Query  266  TEKRGTFKAWTVllaisafslsllGTFLVRSGILVSVHAFASDPSRGMFILGFLVFVIGG  325
            TE+R+ FKAWT+LL+I AFSL LLGTFLVRSG+LVSVHAFASDP+RGMFIL+F+V+V GG
Sbjct  266  TEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGG  325

Query  326  SLLLFAVKGAAVRVRGNFDLVSREnallannvlliaalvvvlvgtllplvHKQIGLGSVS  385
            SLLLFAV+G  VR R N  L SRE+ LL+NNVLL+AA++VVL+GTLLPLVHKQ+GLGS+S
Sbjct  326  SLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSIS  385

Query  386  IGAPFFDMLFAWLMMPFAFLLGIGPLIRWKRDQLSHLIKPMAISGVLAFALGYLCVYLFA  445
            +G PFF+ +F+WLM+PFA+LLG+GPL+RW RD+  ++ K +  + V ++ L+ L   L+ 
Sbjct  386  VGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLE  445

Query  446  DFFDVMAYIGWVMAIWIIAMHGFELYERATHRHPFLTGVRKLQRSHWAMMLGHVGLAVTV  505
            D +  M+ +G  MA WI  +   E  +R ++         K   S W+M+ +H+GLAVT+
Sbjct  446  DKIIAMTAVGMAMACWIAVLAVAEAVQRVSR-------GTKTSLSYWGMVAAHLGLAVTI  498

Query  506  IGIAMVQNYSIERDVRLAPGEHFQIQGYDFYFSGLRDKDGPNYDGYIADFEITHNGQYVN  565
             GIA  QNYS+ERDVR+ +G+   I++Y F F  +RD  GPNY G +A + +T++G+   
Sbjct  499  TGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEA  558

Query  566  TLHAEKRFYRTAKSMMTEAAIDRGITRDLYIAMGERLEDNRSWAVRIYYKPFVRWIWAGS  625
             LHAEKR+Y T++ +MTEAAID G+TRDLY A+GE L++  +WAVR+YYKPFVRWIWAG+
Sbjct  559  VLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG-AWAVRLYYKPFVRWIWAGG  617

Query  626  LIMSFGGLLAMSDRRYRFRKS  646
            L+M++GGLL ++D RYR RK+
Sbjct  618  LLMALGGLLCLADPRYRRRKP  638

277) VVMO6_00849 in NC_014965


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  532 bits (2006),  Expect = 4e-152, Method: Compositional matrix adjust.
 Identities = 383/621 (62%), Positives = 495/621 (80%), Gaps = 8/621 (1%)

Query  26   WGASNNNTMLMNSARPLSWAMFIMLFISFIVLSYGFYANDFTLQYVASNSNSQLPWYYRL  85
            WG +  ++ +M SA  ++W +FI +  +F+VL  +F  NDFT+ YVA+NSN+QLP  YR+
Sbjct  26   WGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRV  85

Query  86   TAVWGAHEGSLLLWVLIQAAWTVAVATFSRGMPQESVARVLAVMGMISVGFLLFIIVTSN  145
            +A WGAHEGSLLLWVL+ ++WT+AVA FSR +P + VARVLAVMGM+  GFL FI+ TS 
Sbjct  86   AATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSG  145

Query  146  PFLRTLPFFPVDGRDLNPLLQDPGLIVHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWA  205
            PF RTLP FPV+GRDLNPLLQDPGLI HPP+LYMGYVGFSVAF+FAIA+L++GRLD+A +
Sbjct  146  PFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFT  205

Query  206  RWSRPWTTAAWVFLTLGIALGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAV  265
            R +RPWT AAWVFLTLGI LGS WAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS+AV
Sbjct  206  RFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAV  265

Query  266  TEKRGTFKAWTVllaisafslsllGTFLVRSGILVSVHAFASDPSRGMFILGFLVFVIGG  325
            TE+R+ FKAWT+LL+I AFSL LLGTFLVRSG+LVSVHAFASDP+RGMFIL+F+V+V GG
Sbjct  266  TEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGG  325

Query  326  SLLLFAVKGAAVRVRGNFDLVSREnallannvlliaalvvvlvgtllplvHKQIGLGSVS  385
            SLLLFAV+G  VR R N  L SRE+ LL+NNVLL+AA++VVL+GTLLPLVHKQ+GLGS+S
Sbjct  326  SLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSIS  385

Query  386  IGAPFFDMLFAWLMMPFAFLLGIGPLIRWKRDQLSHLIKPMAISGVLAFALGYLCVYLFA  445
            +G PFF+ +F+WLM+PFA+LLG+GPL+RW RD+  ++ K +  + V ++ L+ L   L+ 
Sbjct  386  VGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLE  445

Query  446  DFFDVMAYIGWVMAIWIIAMHGFELYERATHRHPFLTGVRKLQRSHWAMMLGHVGLAVTV  505
            D +  M+ +G  MA WI  +   E  +R ++         K   S W+M+ +H+GLAVT+
Sbjct  446  DKIIAMTAVGMAMACWIAVLAVAEAVQRVSR-------GTKTSLSYWGMVAAHLGLAVTI  498

Query  506  IGIAMVQNYSIERDVRLAPGEHFQIQGYDFYFSGLRDKDGPNYDGYIADFEITHNGQYVN  565
             GIA  QNYS+ERDVR+ +G+   I++Y F F  +RD  GPNY G +A + +T++G+   
Sbjct  499  TGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEA  558

Query  566  TLHAEKRFYRTAKSMMTEAAIDRGITRDLYIAMGERLEDNRSWAVRIYYKPFVRWIWAGS  625
             LHAEKR+Y T++ +MTEAAID G+TRDLY A+GE L++  +WAVR+YYKPFVRWIWAG+
Sbjct  559  VLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG-AWAVRLYYKPFVRWIWAGG  617

Query  626  LIMSFGGLLAMSDRRYRFRKS  646
            L+M++GGLL ++D RYR RK+
Sbjct  618  LLMALGGLLCLADPRYRRRKP  638

278) VV2450 in NC_005139


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  532 bits (2006),  Expect = 4e-152, Method: Compositional matrix adjust.
 Identities = 383/621 (62%), Positives = 495/621 (80%), Gaps = 8/621 (1%)

Query  26   WGASNNNTMLMNSARPLSWAMFIMLFISFIVLSYGFYANDFTLQYVASNSNSQLPWYYRL  85
            WG +  ++ +M SA  ++W +FI +  +F+VL  +F  NDFT+ YVA+NSN+QLP  YR+
Sbjct  26   WGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRV  85

Query  86   TAVWGAHEGSLLLWVLIQAAWTVAVATFSRGMPQESVARVLAVMGMISVGFLLFIIVTSN  145
            +A WGAHEGSLLLWVL+ ++WT+AVA FSR +P + VARVLAVMGM+  GFL FI+ TS 
Sbjct  86   AATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSG  145

Query  146  PFLRTLPFFPVDGRDLNPLLQDPGLIVHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWA  205
            PF RTLP FPV+GRDLNPLLQDPGLI HPP+LYMGYVGFSVAF+FAIA+L++GRLD+A +
Sbjct  146  PFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFT  205

Query  206  RWSRPWTTAAWVFLTLGIALGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAV  265
            R +RPWT AAWVFLTLGI LGS WAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS+AV
Sbjct  206  RFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAV  265

Query  266  TEKRGTFKAWTVllaisafslsllGTFLVRSGILVSVHAFASDPSRGMFILGFLVFVIGG  325
            TE+R+ FKAWT+LL+I AFSL LLGTFLVRSG+LVSVHAFASDP+RGMFIL+F+V+V GG
Sbjct  266  TEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGG  325

Query  326  SLLLFAVKGAAVRVRGNFDLVSREnallannvlliaalvvvlvgtllplvHKQIGLGSVS  385
            SLLLFAV+G  VR R N  L SRE+ LL+NNVLL+AA++VVL+GTLLPLVHKQ+GLGS+S
Sbjct  326  SLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSIS  385

Query  386  IGAPFFDMLFAWLMMPFAFLLGIGPLIRWKRDQLSHLIKPMAISGVLAFALGYLCVYLFA  445
            +G PFF+ +F+WLM+PFA+LLG+GPL+RW RD+  ++ K +  + V ++ L+ L   L+ 
Sbjct  386  VGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLE  445

Query  446  DFFDVMAYIGWVMAIWIIAMHGFELYERATHRHPFLTGVRKLQRSHWAMMLGHVGLAVTV  505
            D +  M+ +G  MA WI  +   E  +R ++         K   S W+M+ +H+GLAVT+
Sbjct  446  DKIIAMTAVGMAMACWIAVLAVAEAVQRVSR-------GTKTSLSYWGMVAAHLGLAVTI  498

Query  506  IGIAMVQNYSIERDVRLAPGEHFQIQGYDFYFSGLRDKDGPNYDGYIADFEITHNGQYVN  565
             GIA  QNYS+ERDVR+ +G+   I++Y F F  +RD  GPNY G +A + +T++G+   
Sbjct  499  TGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEA  558

Query  566  TLHAEKRFYRTAKSMMTEAAIDRGITRDLYIAMGERLEDNRSWAVRIYYKPFVRWIWAGS  625
             LHAEKR+Y T++ +MTEAAID G+TRDLY A+GE L++  +WAVR+YYKPFVRWIWAG+
Sbjct  559  VLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG-AWAVRLYYKPFVRWIWAGG  617

Query  626  LIMSFGGLLAMSDRRYRFRKS  646
            L+M++GGLL ++D RYR RK+
Sbjct  618  LLMALGGLLCLADPRYRRRKP  638

279) UMN179_01741 in NC_015460


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  531 bits (2004),  Expect = 6e-152, Method: Compositional matrix adjust.
 Identities = 384/582 (66%), Positives = 480/582 (83%), Gaps = 7/582 (1%)

Query  63   INDFSVQYVVNNSNSQLPIYYRLSAVWGSHEGslllwiwllccwslAVAVFSRRLPQDSV  122
            +NDF+V YV  NSN+QLP+ YR++A WG+HEGSLLLW+ L+  W+LAVAVFSR++P D V
Sbjct  63   VNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIV  122

Query  123  ARVLAVMGMISIGFLIFVIFASNPFTRTFPDLPVDGKELNPMLQDIGLIFHPPLLYMGYV  182
            ARVLAVMGM+  GFL F++F+S PF+RT+P +PV+G++LNP+LQD GLIFHPPLLYMGYV
Sbjct  123  ARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYV  182

Query  183  GFSVAFAFSIASLMSGNLDTAWARWSRPWTLAAWCFLTLGIVLGSWWAYYELGWGGWWFW  242
            GFSVAFAF+IA+L+SG LD+A +R +RPWTLAAW FLTLGIVLGS WAYYELGWGGWWFW
Sbjct  183  GFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFW  242

Query  243  DPVENASFMPWLAGTALLHSLAVTEKRGSFKAWTVLLAILVFSLCLLGTFLVRSGILVSV  302
            DPVENASFMPWLAGTALLHS+AVTE+R++FKAWT+LL+I  FSLCLLGTFLVRSG+LVSV
Sbjct  243  DPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSV  302

Query  303  HAFASDPTRGLYILAYLVVVIGGSLALYAYKGSQIRSRDNYQRYSRESmlllnnvllmta  362
            HAFASDP+RG++ILA++V+V GGSL L+A +G ++RSR N    SRES+LL NNVLLM+A
Sbjct  303  HAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAA  362

Query  363  lavvllgtllplvHKQLGLGSISIGAPFFDQMFLIIMVPFSLLLGIGPLVKWRRDQFSVI  422
            + VVLLGTLLPLVHKQLGLGSIS+G PFF+ MF  +MVPF+LLLG+GPLV+W RD+   I
Sbjct  363  MLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNI  422

Query  423  RKPVVISVILMALLGFILPLILADNITVSVVLGTMMTAIIVLLGGYELQQRASHRSSFLQ  482
            RK +  +V+   +L+ +LP +L D+I     +G  M+  I +L+  E  QR S+ +    
Sbjct  423  RKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT----  478

Query  483  GIGKLSRSHWGMFFAHIGVAVTVFGIAFSQNFSIEKDVRMSVGDSVEVAGYQFTFSQVKE  542
               K S S WGM  AH+G+AVT+ GIAFSQN+S+E+DVRM  GDSV + +Y+FTF +V++
Sbjct  479  ---KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRD  535

Query  543  SNGPNYLGATAEIDVSREGKKITQLEAEKRFYQVSRMSMSEAAIDGGITRDLYAALGERL  602
              GPNY G+ A I+V+R+G   + L+AEKR+Y+ SRM M+EAAIDGG+TRDLYAALGE L
Sbjct  536  ITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEEL  595

Query  603  DNGAWAVRLYYKPFIRWIWFGGLLMALGSVLCMCDRRYRFSK  644
            DNGAWAVRLYYKPF+RWIW GGLLMALG++LC+ D RYR  K
Sbjct  596  DNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

280) ANH9381_0180 in NC_016513


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  531 bits (2003),  Expect = 7e-152, Method: Compositional matrix adjust.
 Identities = 391/629 (63%), Positives = 499/629 (80%), Gaps = 7/629 (1%)

Query  22   IFPLWGAEKGNAQLMSLARPMTYGLFFVLTFSFGALFYLFAVNDFSVQYVVNNSNTTLPI  81
            ++PLWG  +G+A++M+ A   +  LF+ ++ +F  L   F VNDF+V YV  NSNT LP+
Sbjct  22   VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   YYRLSAVWGSHEGslllwiwllslwGAAVALFSKHLPQEATARVLGIMGIISIGFLLFVL  141
             YR++A WG+HEGSLLLW+ L+S W  AVA+FS+++P +  ARVL++MG++  GFL F+L
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  FTSNPFNRTFPDFPVDGKELNPLLQDVGLIFHPPLLYMGYVGFSVAFAFSIASLMTGKLD  201
            FTS PF RT+P FPV+G++LNPLLQD GLIFHPPLLYMGYVGFSVAFAF+IA+L++G+LD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  202  TAWARWSRPWTMAAWIFLTLGIVLGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261
            +A +R +RPWT+AAW+FLTLGIVLGS WAYYELGWGGWWFWDPVENASFMPWLAGTALLH
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  262  SLAVTEKRGSFKAWTVllailafslcllGTFLVRSGILVSVHAFASDPTRGLYVLAYLIV  321
            S+AVTE+R++FKAWT+LL+I AFSLCLLGTFLVRSG+LVSVHAFASDP+RG+++LA++++
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  322  VIGGSLTLYAYKGSQIRSRDNAERYSRESllllnnillMTAlcvvllgtllplvHKQLGL  381
            V GGSL L+A +G ++RSR N    SRESLLL NN+LLM+A+ VVLLGTLLPLVHKQLGL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  382  GSISIGAPFFDQMFLIIMTPFALLLGIGPLVKWRRDQFSAIRTPVIVSLVIMLLAGFALP  441
            GSIS+G PFF+ MF  +M PFALLLG+GPLV+W RD+   IR  +  ++V  L+ +  LP
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLP  441

Query  442  YALQNKLTISAVLGTMMSVIIVLLSLYEMQQRATHRESFWRGITKLSRSHWGMILAHLGV  501
              L++K+   + +G  M+  I +L++ E  QR +      RG TK S S WGM+ AHLG+
Sbjct  442  WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG-TKTSLSYWGMVAAHLGL  494

Query  502  AMTVWGIAFSQNYSVERDVRMHVGDTVQIAGYDFTFKGISDANGPNYIGGKAQIDIHRDG  561
            A+T+ GIAFSQNYSVERDVRM+ GD+V I +Y FTF+ + D  GPNY GG A I++ R+G
Sbjct  495  AVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  562  KKETTLYAEKRLYTVSKMPMTEAAIDWGFSRDLYVALGEKLDDNSWALRLYYKPFIRWIW  621
              E+ L AEKRLY  S+M MTEAAID G++RDLY ALGE LD+ +WA+RLYYKPF+RWIW
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

Query  622  LGGLFMVLGGILCLFDRRYRFSKILGKET  650
             GGL+M LGG+LCL D RYR  K L    
Sbjct  615  AGGLLMALGGLLCLADPRYRRRKPLPEAG  643

281) ccmF in NC_011312


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  530 bits (1999),  Expect = 1e-151, Method: Compositional matrix adjust.
 Identities = 394/647 (61%), Positives = 523/647 (81%), Gaps = 10/647 (1%)

Query  1    MIPELGHFAMIASLGLAVLLSILPMYGASRGNKALMQSARPLAWGMFLLLSLSFGILMWA  60
            M+PE GH  +  +LG+A+LLS+ P+ G +RG+  +M SA  +AW +F+ ++ +F +L+ A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FYVNDFTLQYVASNSNSLLPWYYRLTAVWGAHEGSLLLWVLIQAGWTVAVATFSRGMPQE  120
            F VNDFT+ YVA+NSN+ LP  YR++A WGAHEGSLLLWVL+ +GWT+AVA FSR +P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  SVARVLAVMGWitlgfllfiiltSNPFLRTLPFFPIDGRDLNPLLQDPGLIIHPPMLYMG  180
             VARVLAVMG +  GFL FI++TS PF RTLP FP++GRDLNPLLQDPGLI+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFSFAIASLMTGRLDTAWARWSRPWTIAAWSFLTVGISLGSWWAYYELGWGGWW  240
            YVGFSVAF+FAIA+L++GRLD+A +R +RPWT+AAW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEKRGTFKAWTVllaisafslsllGTFLVRSGILV  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R+ FKAWT+LL+I AFSL LLGTFLVRSG+LV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFLVMVIGGSLLLFALKGSSVRVRGNFALFSREnallannilli  360
            SVHAFASDPARGMFILAF+V+V GGSLLLFA++G  VR R N AL SRE+ LL+NN+LL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  talvvvlvgtllplvHKQLGLGSVSIGAPFFDMLFAWLMIPFAFLLGIGPLIRWKKDNLN  420
            +A++VVL+GTLLPLVHKQLGLGS+S+G PFF+ +F+WLM+PFA+LLG+GPL+RW +D   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  SLVKRMVITGAVTVPLAAVMMV-IFADKFLFMAYLGWMMSIWIIILHGFEMYERATHRHT  479
            + +++++ ++ VT  + +V++  ++ DK++ M+ +G  M+ WI +L   E  +R ++   
Sbjct  421  N-IRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG--  477

Query  480  LAVGLTKLGRSHWAMVSAHIGLAITIIGIAMVQNYSIEKDVRLAPGEHIEMNGYQFYFAG  539
                 TK + S W+MV+AH+GLA+TI GIA  QNYS+E+DVR+ +G+ + +++Y+F F  
Sbjct  478  -----TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  540  IRDTDGPNYDGYTADFDISLDGKAINTLHAEKRFYATSGAMMTEAAIDRGITRDLYIAMG  599
            +RD  GPNY G  A ++++ +G +   LHAEKR+Y TS  +MTEAAID G+TRDLY A+G
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  600  ERLDDNRSWAVRIYYKPFVRWIWAGTLFMALGGVLAMSDKRYRFRKT  646
            E LD+  +WAVR+YYKPFVRWIWAG L+MALGG+L ++D RYR RK 
Sbjct  593  EELDNG-AWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKP  638

282) D11S_1995 in NC_013416


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  530 bits (2001),  Expect = 9e-152, Method: Compositional matrix adjust.
 Identities = 390/629 (63%), Positives = 498/629 (80%), Gaps = 7/629 (1%)

Query  22   IFPLWGAEKGNAQLMSLARPMTYGLFFVLTFSFGALFYLFAVNDFSVQYVVNNSNTTLPI  81
            ++PLWG  +G+A++M+ A   +  LF+ ++ +F  L   F VNDF+V YV  NSNT LP+
Sbjct  22   VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   YYRLSAVWGSHEGslllwiwllslwGAAVALFSKHLPQEATARVLGIMGIISIGFLLFVL  141
             YR++A WG+HEGSLLLW+ L+S W  AVA+FS+++P +  ARVL++MG++  GFL F+L
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  FTSNPFNRTFPDFPVDGKELNPLLQDVGLIFHPPLLYMGYVGFSVAFAFSIASLMTGKLD  201
            FTS PF RT+P FPV+G++LNPLLQD GLIFHPPLLYMGYVGFSVAFAF+IA+L++G+LD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  202  TAWARWSRPWTMAAWIFLTLGIVLGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261
            +A +R +RPWT+AAW+FLTLGIVLGS WAYYELGWGGWWFWDPVENASFMPWLAGTALLH
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  262  SLAVTEKRGSFKAWTVllailafslcllGTFLVRSGILVSVHAFASDPTRGLYVLEYLIV  321
            S+AVTE+R++FKAWT+LL+I AFSLCLLGTFLVRSG+LVSVHAFASDP+RG+++L ++++
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  322  VIGGSLTLYAYKGSQIRSRDNAERYSRESllllnnillMTAlcvvllgtllplvHKQLGL  381
            V GGSL L+A +G ++RSR N    SRESLLL NN+LLM+A+ VVLLGTLLPLVHKQLGL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  382  GSISIGAPFFDQMFLIIMTPFALLLGIGPLVKWRRDQFSAIRTPVIVSLVIMLLAGFALP  441
            GSIS+G PFF+ MF  +M PFALLLG+GPLV+W RD+   IR  +  ++V  L+ +  LP
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLP  441

Query  442  YALQNKLTISAVLGTMMSVIIVLLSLYEMQQRATHRESFWRGITKLSRSHWGMILAHLGV  501
              L++K+   + +G  M+  I +L++ E  QR +      RG TK S S WGM+ AHLG+
Sbjct  442  WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------RG-TKTSLSYWGMVAAHLGL  494

Query  502  AMTVWGIAFSQNYSVERDVRMHVGDTVQIAGYDFTFKGISDANGPNYIGGKAQIDIHRDG  561
            A+T+ GIAFSQNYSVERDVRM+ GD+V I +Y FTF+ + D  GPNY GG A I++ R+G
Sbjct  495  AVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  562  KKETTLYAEKRLYTVSKMPMTEAAIDWGFSRDLYVALGEKLDDNSWALRLYYKPFIRWIW  621
              E+ L AEKRLY  S+M MTEAAID G++RDLY ALGE LD+ +WA+RLYYKPF+RWIW
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

Query  622  LGGLFMVLGGILCLFDRRYRFSKILGKET  650
             GGL+M LGG+LCL D RYR  K L    
Sbjct  615  AGGLLMALGGLLCLADPRYRRRKPLPEAG  643

283) ccmF in NC_006300


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  528 bits (1993),  Expect = 4e-151, Method: Compositional matrix adjust.
 Identities = 397/648 (62%), Positives = 523/648 (81%), Gaps = 7/648 (1%)

Query  1    MIAELGNFALALGLAISVLLAVFPLWGAEKGNKQLMSLARPMTYGLFICLTFAFGALFYA  60
            M++E G+  L L+L++++LL+V+PLWG  +G+ ++M+ A   +  LFIC++ AF  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FAVNDFSIQYVVNNSNSRLPLQYRLSAVWGAHEGslllwiwllsvwsvavslfsRQLPQE  120
            F VNDF++ YV  NSN++LP+ YR++A WGAHEGSLLLW+ L+S W++AV++FSRQ+P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLGIMGLVTIGFLIFILFTSNPFARTFPNLPIDGKELNPMLQDVGLIFHPPLLYMG  180
             VARVL++MG+V  GFL FILFTS PFART+P +P++G++LNP+LQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFSIASLMTGKLDTAWARWSRPWTMAAWVFLTVGIVLGSWWAYYELGWGGWW  240
            YVGFSVAFAF+IA+L++G+LD+A +R +RPWT+AAWVFLT+GIVLGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENSSLMPWLAGTALLHSLAVTEKRGAFKAWTVllailafslcllGTFLVRSGVLV  300
            FWDPVEN+S+MPWLAGTALLHS+AVTE+R++FKAWT+LL+I AFSLCLLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPTRGLYILAYLIVVIGGSLTLYAYKGGQIRSRDNAERYSRESMlllnnillm  360
            SVHAFASDP+RG++ILA++++V GGSL L+A +G ++RSR N    SRES+LL NN+LLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aalvvvllgtllplvHKQLGLGSISIGAPFFNQMFLVLMTPFALLLGIGPLVKWRRDKFS  420
            AA++VVLLGTLLPLVHKQLGLGSIS+G PFFN MF  LM PFALLLG+GPLV+W RD+  
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  AIRKPVIISLFLMIILGFALPYFIGNKLSLSAVLGTMMVVIITLLSLYELKQRAAHRDNF  480
             IRK +  ++   ++L+  LP ++ +K+   + +G  M   I++L++ E  QR ++    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG---  477

Query  481  LIGITKLSRSHWGMFLAHLGVAMTVWGVTFSQNFSVERDVRMSVGDSVNIAGYEYKFQGI  540
                TK S S WGM  AHLG+A+T+ G++FSQN+SVERDVRM  GDSV I +Y + F+ +
Sbjct  478  ----TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  RDANGPNYLGGTAQVDILKEGKLEGSLFAEKRFYTVSRMTMTEAAIDWGFTRDLYVALGE  600
            RD  GPNY GG A +++ ++G  E+ L AEKR+Y  SRM MTEAAID G+TRDLY ALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  QLEDKSWAMRLYYKPFIRWIWFGGVFMALGGVLCMFDRRYRFSKILNK  648
            +L++ +WA+RLYYKPF+RWIW GG++MALGG+LC+ D RYR  K L  
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPE  641

284) amad1_04650 in NC_019393


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  525 bits (1981),  Expect = 4e-150, Method: Compositional matrix adjust.
 Identities = 369/651 (57%), Positives = 505/651 (78%), Gaps = 15/651 (2%)

Query  1    MVPEIGNialtlalvlsillavYPLWGAHRQHEALMATAKPLAIGLFTFTLIAYVCLTYA  60
            M+PE G+  L LAL +++LL+VYPLWG  R +  +MA+A  +A  LF     A+  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVTDDFSVAYVAQHSNSRLPIYYKITAVWGGHEGSFLLWVLMLSIWTVAVAIFSKGIPLA  120
            FV +DF+VAYVA +SN++LP+ Y+++A WG+HEGS+LLWVL++S WT+AVA+FS+ +P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MVARVLSVLGMVGIGFYLFMLLTSNPFDSMLPFFPVDGRDLNPLLQDFGMIIHPPMLYMG  180
            +VARVL+V+GMV  GF  F+L+TS PF   LP FPV+GRDLNPLLQD G+I+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAISALISGQLDSTWARWSRPWVIAAWAFLTVGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAI+AL+SG+LDS+ +R +RPW +AAW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEKRKAFKSWTVllaiaafslsllGTFLVRSGVIV  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R +FK+WT+LL+I AFSL LLGTFLVRSGV+V
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPTRGLFILGILIVLSGFGLLLYAMRAASLKSPGRYQAFSREVLLMGNNVFlc  360
            SVH+FASDP+RG+FIL+++++++G +LLL+A+R+  ++S       SRE LL+GNNV+L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aatlvvllgtllplvHKELGLGSISVGAPFFNQMFTLLIVPFVLMLGLGPLTRWKQQKAS  420
            AA LVVLLGTLLPLVHK+LGLGSISVG PFFN MFT L+VPF L+LG+GPL RW ++++ 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  ELQKQLLVAGGIALSAGVLVNFAYDEPTY-MGVLGMVLVFWILVTTVQEVMQRLAAMPSS  479
            +++K L  A   +L  +VL+    ++    M  +GM +  WI V +V E +QR       
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQR-------  473

Query  480  NTENASVIAKLRKLTPSHWGMVLGHVGFAICIIGITLVSNYELERDVRMDIGDTVSLGGY  539
                   +++  K + S WGMV +H+G+A+ I GI++  NY +ERDVRM  GD+V++ +Y
Sbjct  474  -------VSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  540  DFSFRDVRKVEGPNFNADKGIFDVYKNGEMIAHLEPEKRLYIVQRMPMTEAAIHSNLARD  599
             F+FR+VR + GPN+ ++ ++++V ++GE  A L++EKRLY   RM MTEAAI++ L+RD
Sbjct  527  RFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  600  LFIAMGEPLDNGAWAIRIYIKPFVIWLWAGAVVMAIGGIFSISDKRYRMAK  650
            L+ A+GE LDNGAWA+R+Y KPFV W+WAG+++MA+GG++ ++D RYR  K
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

285) MADE_1004785 in NC_011138


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  525 bits (1981),  Expect = 4e-150, Method: Compositional matrix adjust.
 Identities = 369/651 (57%), Positives = 505/651 (78%), Gaps = 15/651 (2%)

Query  1    MVPEIGNialtlalvlsillavYPLWGAHRKHEALMATAKPLAIGLFTFTLIAYVCLTYA  60
            M+PE G+  L LAL +++LL+VYPLWG  R +  +MA+A  +A  LF     A+  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVTDDFSVAYVAQHSNSRLPIYYKITAVWGGHEGSFLLWVLMLSIWTVAVAIFSKGIPLA  120
            FV +DF+VAYVA +SN++LP+ Y+++A WG+HEGS+LLWVL++S WT+AVA+FS+ +P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MVARVLSVLGMVGIGFYLFMLLTSNPFDSMLPFFPVDGRDLNPLLQDFGMIIHPPMLYMG  180
            +VARVL+V+GMV  GF  F+L+TS PF   LP FPV+GRDLNPLLQD G+I+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAISALISGQLDSTWARWSRPWVIAAWAFLTVGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAI+AL+SG+LDS+ +R +RPW +AAW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEKRKAFKSWTVllaiaafslsllGTFLVRSGVIV  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R +FK+WT+LL+I AFSL LLGTFLVRSGV+V
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPTRGLFILGILIVLSGFGLLLYAMRAASLKSPGRYQAFSREVLLMGNNVFlc  360
            SVH+FASDP+RG+FIL+++++++G +LLL+A+R+  ++S       SRE LL+GNNV+L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aatlvvllgtllplvHKELGLGSISVGAPFFNQMFTLLIVPFVLMLGLGPLTRWKQQKAS  420
            AA LVVLLGTLLPLVHK+LGLGSISVG PFFN MFT L+VPF L+LG+GPL RW ++++ 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  ELQKQLLVAGGIALSAGVLVNFAYDEPTY-MGVLGMVLVFWILVTTVQEVMQRLAAMPSS  479
            +++K L  A   +L  +VL+    ++    M  +GM +  WI V +V E +QR       
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQR-------  473

Query  480  NTENASVIAKLRKLTPSHWGMVLGHVGFAICIIGITLVSNYELERDVRMDIGDTVSLGGY  539
                   +++  K + S WGMV +H+G+A+ I GI++  NY +ERDVRM  GD+V++ +Y
Sbjct  474  -------VSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  540  DFSFRDVRKVEGPNFNADKGIFDVYKNGEMIAHLEPEKRLYIVQRMPMTEAAIHSNLARD  599
             F+FR+VR + GPN+ ++ ++++V ++GE  A L++EKRLY   RM MTEAAI++ L+RD
Sbjct  527  RFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  600  LFIAMGEPLDNGAWAIRIYIKPFVIWLWAGAVVMAIGGIFSISDKRYRMAK  650
            L+ A+GE LDNGAWA+R+Y KPFV W+WAG+++MA+GG++ ++D RYR  K
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

286) I607_04415 in NC_021710


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  525 bits (1981),  Expect = 4e-150, Method: Compositional matrix adjust.
 Identities = 369/651 (57%), Positives = 505/651 (78%), Gaps = 15/651 (2%)

Query  1    MVPEIGNialtlalvlsillavYPLWGAHRQHEALMATAKPLAIGLFTFTLIAYVCLTYA  60
            M+PE G+  L LAL +++LL+VYPLWG  R +  +MA+A  +A  LF     A+  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVTDDFSVAYVAQHSNSRLPIYYKITAVWGGHEGSFLLWVLMLSIWTVAVAIFSKGIPLA  120
            FV +DF+VAYVA +SN++LP+ Y+++A WG+HEGS+LLWVL++S WT+AVA+FS+ +P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MVARVLSVLGMVGIGFYLFMLLTSNPFDSMLPFFPVDGRDLNPLLQDFGMIIHPPMLYMG  180
            +VARVL+V+GMV  GF  F+L+TS PF   LP FPV+GRDLNPLLQD G+I+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAISALISGQLDSTWARWSRPWVIAAWAFLTVGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAI+AL+SG+LDS+ +R +RPW +AAW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEKRKAFKSWTVllaiaafslsllGTFLVRSGVIV  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R +FK+WT+LL+I AFSL LLGTFLVRSGV+V
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPTRGLFILGILIVLSGFGLLLYAMRAASLKSPGRYQAFSREVLLMGNNVFlc  360
            SVH+FASDP+RG+FIL+++++++G +LLL+A+R+  ++S       SRE LL+GNNV+L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aatlvvllgtllplvHKELGLGSISVGAPFFNQMFTLLIVPFVLMLGLGPLTRWKQQKAS  420
            AA LVVLLGTLLPLVHK+LGLGSISVG PFFN MFT L+VPF L+LG+GPL RW ++++ 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  ELQKQLLVAGGIALSAGVLVNFAYDEPTY-MGVLGMVLVFWILVTTVQEVMQRLAAMPSS  479
            +++K L  A   +L  +VL+    ++    M  +GM +  WI V +V E +QR       
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQR-------  473

Query  480  NTENASVIAKLRKLTPSHWGMVLGHVGFAICIIGITLVSNYELERDVRMDIGDTVSLGGY  539
                   +++  K + S WGMV +H+G+A+ I GI++  NY +ERDVRM  GD+V++ +Y
Sbjct  474  -------VSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  540  DFSFRDVRKVEGPNFNADKGIFDVYKNGEMIAHLEPEKRLYIVQRMPMTEAAIHSNLARD  599
             F+FR+VR + GPN+ ++ ++++V ++GE  A L++EKRLY   RM MTEAAI++ L+RD
Sbjct  527  RFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  600  LFIAMGEPLDNGAWAIRIYIKPFVIWLWAGAVVMAIGGIFSISDKRYRMAK  650
            L+ A+GE LDNGAWA+R+Y KPFV W+WAG+++MA+GG++ ++D RYR  K
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

287) I876_04625 in NC_021717


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  525 bits (1981),  Expect = 4e-150, Method: Compositional matrix adjust.
 Identities = 369/651 (57%), Positives = 505/651 (78%), Gaps = 15/651 (2%)

Query  1    MVPEIGNialtlalvlsillavYPLWGAHRQHEALMATAKPLAIGLFTFTLIAYVCLTYA  60
            M+PE G+  L LAL +++LL+VYPLWG  R +  +MA+A  +A  LF     A+  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVTDDFSVAYVAQHSNSRLPIYYKITAVWGGHEGSFLLWVLMLSIWTVAVAIFSKGIPLA  120
            FV +DF+VAYVA +SN++LP+ Y+++A WG+HEGS+LLWVL++S WT+AVA+FS+ +P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MVARVLSVLGMVGIGFYLFMLLTSNPFDSMLPFFPVDGRDLNPLLQDFGMIIHPPMLYMG  180
            +VARVL+V+GMV  GF  F+L+TS PF   LP FPV+GRDLNPLLQD G+I+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAISALISGQLDSTWARWSRPWVIAAWAFLTVGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAI+AL+SG+LDS+ +R +RPW +AAW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEKRKAFKSWTVllaiaafslsllGTFLVRSGVIV  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R +FK+WT+LL+I AFSL LLGTFLVRSGV+V
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPTRGLFILGILIVLSGFGLLLYAMRAASLKSPGRYQAFSREVLLMGNNVFlc  360
            SVH+FASDP+RG+FIL+++++++G +LLL+A+R+  ++S       SRE LL+GNNV+L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aatlvvllgtllplvHKELGLGSISVGAPFFNQMFTLLIVPFVLMLGLGPLTRWKQQKAS  420
            AA LVVLLGTLLPLVHK+LGLGSISVG PFFN MFT L+VPF L+LG+GPL RW ++++ 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  ELQKQLLVAGGIALSAGVLVNFAYDEPTY-MGVLGMVLVFWILVTTVQEVMQRLAAMPSS  479
            +++K L  A   +L  +VL+    ++    M  +GM +  WI V +V E +QR       
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQR-------  473

Query  480  NTENASVIAKLRKLTPSHWGMVLGHVGFAICIIGITLVSNYELERDVRMDIGDTVSLGGY  539
                   +++  K + S WGMV +H+G+A+ I GI++  NY +ERDVRM  GD+V++ +Y
Sbjct  474  -------VSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  540  DFSFRDVRKVEGPNFNADKGIFDVYKNGEMIAHLEPEKRLYIVQRMPMTEAAIHSNLARD  599
             F+FR+VR + GPN+ ++ ++++V ++GE  A L++EKRLY   RM MTEAAI++ L+RD
Sbjct  527  RFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  600  LFIAMGEPLDNGAWAIRIYIKPFVIWLWAGAVVMAIGGIFSISDKRYRMAK  650
            L+ A+GE LDNGAWA+R+Y KPFV W+WAG+++MA+GG++ ++D RYR  K
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

288) I634_04800 in NC_021712


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  525 bits (1981),  Expect = 4e-150, Method: Compositional matrix adjust.
 Identities = 369/651 (57%), Positives = 505/651 (78%), Gaps = 15/651 (2%)

Query  1    MVPEIGNialtlalvlsillavYPLWGAHRQHEALMATAKPLAIGLFTFTLIAYVCLTYA  60
            M+PE G+  L LAL +++LL+VYPLWG  R +  +MA+A  +A  LF     A+  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVTDDFSVAYVAQHSNSRLPIYYKITAVWGGHEGSFLLWVLMLSIWTVAVAIFSKGIPLA  120
            FV +DF+VAYVA +SN++LP+ Y+++A WG+HEGS+LLWVL++S WT+AVA+FS+ +P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MVARVLSVLGMVGIGFYLFMLLTSNPFDSMLPFFPVDGRDLNPLLQDFGMIIHPPMLYMG  180
            +VARVL+V+GMV  GF  F+L+TS PF   LP FPV+GRDLNPLLQD G+I+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAISALISGQLDSTWARWSRPWVIAAWAFLTVGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAI+AL+SG+LDS+ +R +RPW +AAW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEKRKAFKSWTVllaiaafslsllGTFLVRSGVIV  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R +FK+WT+LL+I AFSL LLGTFLVRSGV+V
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPTRGLFILGILIVLSGFGLLLYAMRAASLKSPGRYQAFSREVLLMGNNVFlc  360
            SVH+FASDP+RG+FIL+++++++G +LLL+A+R+  ++S       SRE LL+GNNV+L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aatlvvllgtllplvHKELGLGSISVGAPFFNQMFTLLIVPFVLMLGLGPLTRWKQQKAS  420
            AA LVVLLGTLLPLVHK+LGLGSISVG PFFN MFT L+VPF L+LG+GPL RW ++++ 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  ELQKQLLVAGGIALSAGVLVNFAYDEPTY-MGVLGMVLVFWILVTTVQEVMQRLAAMPSS  479
            +++K L  A   +L  +VL+    ++    M  +GM +  WI V +V E +QR       
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQR-------  473

Query  480  NTENASVIAKLRKLTPSHWGMVLGHVGFAICIIGITLVSNYELERDVRMDIGDTVSLGGY  539
                   +++  K + S WGMV +H+G+A+ I GI++  NY +ERDVRM  GD+V++ +Y
Sbjct  474  -------VSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  540  DFSFRDVRKVEGPNFNADKGIFDVYKNGEMIAHLEPEKRLYIVQRMPMTEAAIHSNLARD  599
             F+FR+VR + GPN+ ++ ++++V ++GE  A L++EKRLY   RM MTEAAI++ L+RD
Sbjct  527  RFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  600  LFIAMGEPLDNGAWAIRIYIKPFVIWLWAGAVVMAIGGIFSISDKRYRMAK  650
            L+ A+GE LDNGAWA+R+Y KPFV W+WAG+++MA+GG++ ++D RYR  K
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

289) I636_04645 in NC_021714


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  525 bits (1981),  Expect = 4e-150, Method: Compositional matrix adjust.
 Identities = 369/651 (57%), Positives = 505/651 (78%), Gaps = 15/651 (2%)

Query  1    MVPEIGNialtlalvlsillavYPLWGAHRQHEALMATAKPLAIGLFTFTLIAYVCLTYA  60
            M+PE G+  L LAL +++LL+VYPLWG  R +  +MA+A  +A  LF     A+  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVTDDFSVAYVAQHSNSRLPIYYKITAVWGGHEGSFLLWVLMLSIWTVAVAIFSKGIPLA  120
            FV +DF+VAYVA +SN++LP+ Y+++A WG+HEGS+LLWVL++S WT+AVA+FS+ +P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MVARVLSVLGMVGIGFYLFMLLTSNPFDSMLPFFPVDGRDLNPLLQDFGMIIHPPMLYMG  180
            +VARVL+V+GMV  GF  F+L+TS PF   LP FPV+GRDLNPLLQD G+I+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAISALISGQLDSTWARWSRPWVIAAWAFLTVGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAI+AL+SG+LDS+ +R +RPW +AAW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEKRKAFKSWTVllaiaafslsllGTFLVRSGVIV  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R +FK+WT+LL+I AFSL LLGTFLVRSGV+V
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPTRGLFILGILIVLSGFGLLLYAMRAASLKSPGRYQAFSREVLLMGNNVFlc  360
            SVH+FASDP+RG+FIL+++++++G +LLL+A+R+  ++S       SRE LL+GNNV+L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aatlvvllgtllplvHKELGLGSISVGAPFFNQMFTLLIVPFVLMLGLGPLTRWKQQKAS  420
            AA LVVLLGTLLPLVHK+LGLGSISVG PFFN MFT L+VPF L+LG+GPL RW ++++ 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  ELQKQLLVAGGIALSAGVLVNFAYDEPTY-MGVLGMVLVFWILVTTVQEVMQRLAAMPSS  479
            +++K L  A   +L  +VL+    ++    M  +GM +  WI V +V E +QR       
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQR-------  473

Query  480  NTENASVIAKLRKLTPSHWGMVLGHVGFAICIIGITLVSNYELERDVRMDIGDTVSLGGY  539
                   +++  K + S WGMV +H+G+A+ I GI++  NY +ERDVRM  GD+V++ +Y
Sbjct  474  -------VSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  540  DFSFRDVRKVEGPNFNADKGIFDVYKNGEMIAHLEPEKRLYIVQRMPMTEAAIHSNLARD  599
             F+FR+VR + GPN+ ++ ++++V ++GE  A L++EKRLY   RM MTEAAI++ L+RD
Sbjct  527  RFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  600  LFIAMGEPLDNGAWAIRIYIKPFVIWLWAGAVVMAIGGIFSISDKRYRMAK  650
            L+ A+GE LDNGAWA+R+Y KPFV W+WAG+++MA+GG++ ++D RYR  K
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

290) I635_04620 in NC_021713


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  525 bits (1981),  Expect = 4e-150, Method: Compositional matrix adjust.
 Identities = 369/651 (57%), Positives = 505/651 (78%), Gaps = 15/651 (2%)

Query  1    MVPEIGNialtlalvlsillavYPLWGAHRQHEALMATAKPLAIGLFTFTLIAYVCLTYA  60
            M+PE G+  L LAL +++LL+VYPLWG  R +  +MA+A  +A  LF     A+  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVTDDFSVAYVAQHSNSRLPIYYKITAVWGGHEGSFLLWVLMLSIWTVAVAIFSKGIPLA  120
            FV +DF+VAYVA +SN++LP+ Y+++A WG+HEGS+LLWVL++S WT+AVA+FS+ +P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MVARVLSVLGMVGIGFYLFMLLTSNPFDSMLPFFPVDGRDLNPLLQDFGMIIHPPMLYMG  180
            +VARVL+V+GMV  GF  F+L+TS PF   LP FPV+GRDLNPLLQD G+I+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAISALISGQLDSTWARWSRPWVIAAWAFLTVGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAI+AL+SG+LDS+ +R +RPW +AAW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEKRKAFKSWTVllaiaafslsllGTFLVRSGVIV  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R +FK+WT+LL+I AFSL LLGTFLVRSGV+V
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPTRGLFILGILIVLSGFGLLLYAMRAASLKSPGRYQAFSREVLLMGNNVFlc  360
            SVH+FASDP+RG+FIL+++++++G +LLL+A+R+  ++S       SRE LL+GNNV+L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aatlvvllgtllplvHKELGLGSISVGAPFFNQMFTLLIVPFVLMLGLGPLTRWKQQKAS  420
            AA LVVLLGTLLPLVHK+LGLGSISVG PFFN MFT L+VPF L+LG+GPL RW ++++ 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  ELQKQLLVAGGIALSAGVLVNFAYDEPTY-MGVLGMVLVFWILVTTVQEVMQRLAAMPSS  479
            +++K L  A   +L  +VL+    ++    M  +GM +  WI V +V E +QR       
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQR-------  473

Query  480  NTENASVIAKLRKLTPSHWGMVLGHVGFAICIIGITLVSNYELERDVRMDIGDTVSLGGY  539
                   +++  K + S WGMV +H+G+A+ I GI++  NY +ERDVRM  GD+V++ +Y
Sbjct  474  -------VSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  540  DFSFRDVRKVEGPNFNADKGIFDVYKNGEMIAHLEPEKRLYIVQRMPMTEAAIHSNLARD  599
             F+FR+VR + GPN+ ++ ++++V ++GE  A L++EKRLY   RM MTEAAI++ L+RD
Sbjct  527  RFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  600  LFIAMGEPLDNGAWAIRIYIKPFVIWLWAGAVVMAIGGIFSISDKRYRMAK  650
            L+ A+GE LDNGAWA+R+Y KPFV W+WAG+++MA+GG++ ++D RYR  K
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

291) VEJY3_11425 in NC_016613


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  524 bits (1977),  Expect = 8e-150, Method: Compositional matrix adjust.
 Identities = 384/619 (63%), Positives = 497/619 (81%), Gaps = 8/619 (1%)

Query  1    MIAEIGHFALILSLAMAVLLSILPLWGASNNNTMLMNTARPlswsmflmllfsfiilCWG  60
            M++E GH  L L+L++A+LLS+ PLWG +  ++ +M +A  ++W +F+ +  +F++L  +
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FYTNDFTLQYVASNSNSQLPWYYRLTAVWGAHEGSLLLWVLIQAAWTVAVATFSRGMPQE  120
            F  NDFT+ YVA+NSN+QLP  YR++A WGAHEGSLLLWVL+ ++WT+AVA FSR +P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  SVARVLAVMGMISVGFLMFIIFTSSPFLRTLPFFPIDGRDLNPLLQDPGLIVHPPMLYMG  180
             VARVLAVMGM+  GFL FI+FTS+PF RTLP FP++GRDLNPLLQDPGLI HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFSFAIASLMTGRLDTAWARWSRPWTTAAWVFLTLGIALGSWWAYYELGWGGWW  240
            YVGFSVAF+FAIA+L++GRLD+A +R +RPWT AAWVFLTLGI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVllaisafslsllGTFLVRSGILV  300
            FWDPVENASFMPWLAGTAL+HS+AVTE+R+ FKAWT+LL+I AFSL LLGTFLVRSG+LV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGMFILAFLVFVIGGSLLLFAVKGASVRVRGNFDLVSRENvllgnnvlli  360
            SVHAFASDPARGMFILAF+V+V GGSLLLFAV+G  VR R N  L SRE++LLGNNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aalvvvlvgtllplvHKQIGLGSVSIGAPFFDMLFAWLMMPFAFLLGIGPLIRWKRDQLS  420
            AA++VVL+GTLLPLVHKQ+GLGS+S+G PFF+ +F+WLM+PFA+LLG+GPL+RW RD+  
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  SIVKPMVISGVTALVLAAVCVYLFADFFQIMAYIGWVMAIWIIVMHGFELHERATHRHSF  480
            +I K +  + VT+LVL+ +   L+ D +  M+ +G  MA WI V+   E  +R ++    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSR----  476

Query  481  VEGVGKLQRSHWAMMLGHIGLAVTVIGIAMVQNYSIERDVRLAPGEHFQIQGYDFYFSGL  540
                 K   S W+M+ +H+GLAVT+ GIA  QNYS+ERDVR+ +G+   I++Y F F  +
Sbjct  477  ---GTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  RDKDGPNYDGYIADFEVTHNGNYVNTLHAEKRFYRTAKSMMTEAAIDRGVTRDLYIAMGE  600
            RD  GPNY G +A + VT++G+    LHAEKR+Y T++ +MTEAAID G+TRDLY A+GE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  RLEDNRSWAVRIYYKPFVR  619
             L++  +WAVR+YYKPFVR
Sbjct  594  ELDNG-AWAVRLYYKPFVR  611

292) M634_13490 in NC_021847


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  523 bits (1974),  Expect = 1e-149, Method: Compositional matrix adjust.
 Identities = 384/621 (62%), Positives = 492/621 (80%), Gaps = 8/621 (1%)

Query  26   WGASNNNTMLMNTARPLSWSMFIMLFFSFVILCWGFYTNDFTLQYVASNSNSQLPWYYRL  85
            WG +  ++ +M +A  ++W +FI +  +F +L  +F  NDFT+ YVA+NSN+QLP  YR+
Sbjct  26   WGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRV  85

Query  86   TAVWGAHEGSLLLWVLIQAGWTVAVATFSRGMPQESVARVLAVMGMISVGFLLFIILTSN  145
            +A WGAHEGSLLLWVL+ +GWT+AVA FSR +P + VARVLAVMGM+  GFL FI++TS 
Sbjct  86   AATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSG  145

Query  146  PFLRTLPFFPVDGRDLNPLLQDPGLIVHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWA  205
            PF RTLP FPV+GRDLNPLLQDPGLI HPP+LYMGYVGFSVAF+FAIA+L++GRLD+A +
Sbjct  146  PFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFT  205

Query  206  RWSRPWTTAAWVFLTLGIALGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAV  265
            R +RPWT AAWVFLTLGI LGS WAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS+AV
Sbjct  206  RFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAV  265

Query  266  TEKRGTFKAWTVllaisafslsllGTFLVRSGILVSVHAFASDPSRGMFILGFLVFVIGG  325
            TE+R+ FKAWT+LL+I AFSL LLGTFLVRSG+LVSVHAFASDP+RGMFIL+F+V+V GG
Sbjct  266  TEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGG  325

Query  326  SLLLFAVKGAAVRVRGNFDLVSREnallannvlliaalvvvlvgtllplvHKQLGLGSVS  385
            SLLLFAV+G  VR R N  L SRE+ LL+NNVLL+AA++VVL+GTLLPLVHKQLGLGS+S
Sbjct  326  SLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSIS  385

Query  386  IGAPFFDMLFAWLMMPFAFLLGIGPLIRWKRDQLSSIVKPMLVSGTvslalaavcvflfa  445
            +G PFF+ +F+WLM+PFA+LLG+GPL+RW RD+  +I K +  +   +L L+ +   L+ 
Sbjct  386  VGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLE  445

Query  446  dffSVMAYIGWVMSIWIVAMHAFELHERATHRHSFAEGVRKLQRSHWAMMLGHIGLAVTI  505
            D +  M+ +G  M+ WI  +   E  +R ++         K   S W+M+ +H+GLAVTI
Sbjct  446  DKIIAMTAVGMAMACWIAVLAVAEAVQRVSR-------GTKTSLSYWGMVAAHLGLAVTI  498

Query  506  IGIAMVQNYSIERDVRLAPGEHFQIEGYDFYFSGLRDKDGPNYDGYIADFEITHDGKYIN  565
             GIA  QNYS+ERDVR+ +G+   I++Y F F  +RD  GPNY G +A + +T++G    
Sbjct  499  TGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEA  558

Query  566  TLHAEKRFYRTAKSMMTEAAIDRGITRDLYIAMGERLEDNRSWAVRIYYKPFVRWIWAGS  625
             LHAEKR+Y T++ +MTEAAID G+TRDLY A+GE L++  +WAVR+YYKPFVRWIWAG+
Sbjct  559  VLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG-AWAVRLYYKPFVRWIWAGG  617

Query  626  LIMALGGALAISDKRYRFRKS  646
            L+MALGG L ++D RYR RK+
Sbjct  618  LLMALGGLLCLADPRYRRRKP  638

293) VP2218 in NC_004603


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  523 bits (1975),  Expect = 1e-149, Method: Compositional matrix adjust.
 Identities = 385/621 (62%), Positives = 492/621 (80%), Gaps = 8/621 (1%)

Query  26   WGASNNNTMLMNTARPLSWSMFIMLFFSFVILCWGFYTNDFTLQYVASNSNSQLPWYYRL  85
            WG +  ++ +M +A  ++W +FI +  +F +L  +F  NDFT+ YVA+NSN+QLP  YR+
Sbjct  26   WGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRV  85

Query  86   TAVWGAHEGSLLLWVLIQAGWTVAVATFSRGMPQESVARVLAVMGMISVGFLLFIILTSN  145
            +A WGAHEGSLLLWVL+ +GWT+AVA FSR +P + VARVLAVMGM+  GFL FI++TS 
Sbjct  86   AATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSG  145

Query  146  PFLRTLPFFPVDGRDLNPLLQDPGLIVHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWA  205
            PF RTLP FPV+GRDLNPLLQDPGLI HPP+LYMGYVGFSVAF+FAIA+L++GRLD+A +
Sbjct  146  PFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFT  205

Query  206  RWSRPWTTAAWVFLTLGIALGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAV  265
            R +RPWT AAWVFLTLGI LGS WAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS+AV
Sbjct  206  RFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAV  265

Query  266  TEKRGTFKAWTVllaisafslsllGTFLVRSGILVSVHAFASDPSRGMFILGFLVFVIGG  325
            TE+R+ FKAWT+LL+I AFSL LLGTFLVRSG+LVSVHAFASDP+RGMFIL+F+V+V GG
Sbjct  266  TEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGG  325

Query  326  SLLLFAVKGAAVRVRGNFDLVSREnallannvlliaalvvvlvgtllplvHKQLGLGSVS  385
            SLLLFAV+G  VR R N  L SRE+ LL+NNVLL+AA++VVL+GTLLPLVHKQLGLGS+S
Sbjct  326  SLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSIS  385

Query  386  IGAPFFDMLFAWLMMPFAFLLGIGPLIRWKRDQLSSIVKPMLVSGTMSlalaavcvflfa  445
            +G PFF+ +F+WLM+PFA+LLG+GPL+RW RD+  +I K +  +   +L L+ +   L+ 
Sbjct  386  VGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLE  445

Query  446  dffSVMAYIGWVMSIWIVAMHAFELHERATHRHSFAEGVRKLQRSHWAMMFGHIGLAVTI  505
            D +  M+ +G  M+ WI  +   E  +R ++         K   S W+M+ +H+GLAVTI
Sbjct  446  DKIIAMTAVGMAMACWIAVLAVAEAVQRVSR-------GTKTSLSYWGMVAAHLGLAVTI  498

Query  506  IGIAMVQNYSIERDVRLAPGEHFQIEGYDFYFSGLRDKDGPNYDGYIADFEITHDGKYIN  565
             GIA  QNYS+ERDVR+ +G+   I++Y F F  +RD  GPNY G +A + +T++G    
Sbjct  499  TGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEA  558

Query  566  TLHAEKRFYRTAKSMMTEAAIDRGITRDLYIAMGERLDDNRSWAVRIYYKPFVRWIWAGS  625
             LHAEKR+Y T++ +MTEAAID G+TRDLY A+GE LD+  +WAVR+YYKPFVRWIWAG+
Sbjct  559  VLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG-AWAVRLYYKPFVRWIWAGG  617

Query  626  LIMALGGALAISDKRYRFRKS  646
            L+MALGG L ++D RYR RK+
Sbjct  618  LLMALGGLLCLADPRYRRRKP  638

294) VPBB_2036 in NC_019955


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  523 bits (1973),  Expect = 2e-149, Method: Compositional matrix adjust.
 Identities = 384/621 (62%), Positives = 492/621 (80%), Gaps = 8/621 (1%)

Query  26   WGASNNNTMLMNTARPLSWSMFIMLFFSFVILCWGFYTNDFTLQYVASNSNSQLPWYYRL  85
            WG +  ++ +M +A  ++W +FI +  +F +L  +F  NDFT+ YVA+NSN+QLP  YR+
Sbjct  26   WGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRV  85

Query  86   TAVWGAHEGSLLLWVLIQAGWTVAVATFSRGMPQESVARVLAVMGMISVGFLLFIILTSN  145
            +A WGAHEGSLLLWVL+ +GWT+AVA FSR +P + VARVLAVMGM+  GFL FI++TS 
Sbjct  86   AATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSG  145

Query  146  PFLRTLPFFPVDGRDLNPLLQDPGLIVHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWA  205
            PF RTLP FPV+GRDLNPLLQDPGLI HPP+LYMGYVGFSVAF+FAIA+L++GRLD+A +
Sbjct  146  PFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFT  205

Query  206  RWSRPWTTAAWVFLTLGIALGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAV  265
            R +RPWT AAWVFLTLGI LGS WAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS+AV
Sbjct  206  RFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAV  265

Query  266  TEKRGTFKAWTVllaisafslsllGTFLVRSGILVSVHAFASDPSRGMFILGFLVFVIGG  325
            TE+R+ FKAWT+LL+I AFSL LLGTFLVRSG+LVSVHAFASDP+RGMFIL+F+V+V GG
Sbjct  266  TEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGG  325

Query  326  SLLLFAVKGAAVRVRGNFDLVSREnallannvlliaalvvvlvgtllplvHKQLGLGSVS  385
            SLLLFAV+G  VR R N  L SRE+ LL+NNVLL+AA++VVL+GTLLPLVHKQLGLGS+S
Sbjct  326  SLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSIS  385

Query  386  IGAPFFDMLFAWLMMPFAFLLGIGPLIRWKRDQLSSIVKPMLVSGTvslalaavcvflfa  445
            +G PFF+ +F+WLM+PFA+LLG+GPL+RW RD+  +I K +  +   +L L+ +   L+ 
Sbjct  386  VGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLE  445

Query  446  dffSVMAYIGWVMSIWIVAMHAFELHERATHRHSFAEGVRKLQRSHWAMMFGHIGLAVTI  505
            D +  M+ +G  M+ WI  +   E  +R ++         K   S W+M+ +H+GLAVTI
Sbjct  446  DKIIAMTAVGMAMACWIAVLAVAEAVQRVSR-------GTKTSLSYWGMVAAHLGLAVTI  498

Query  506  IGIAMVQNYSIERDVRLAPGEHFQIEGYDFYFSGLRDKDGPNYDGYIADFEITHDGKYIN  565
             GIA  QNYS+ERDVR+ +G+   I++Y F F  +RD  GPNY G +A + +T++G    
Sbjct  499  TGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEA  558

Query  566  TLHAEKRFYRTAKSMMTEAAIDRGITRDLYIAMGERLEDNRSWAVRIYYKPFVRWIWAGS  625
             LHAEKR+Y T++ +MTEAAID G+TRDLY A+GE L++  +WAVR+YYKPFVRWIWAG+
Sbjct  559  VLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG-AWAVRLYYKPFVRWIWAGG  617

Query  626  LIMALGGALAISDKRYRFRKS  646
            L+MALGG L ++D RYR RK+
Sbjct  618  LLMALGGLLCLADPRYRRRKP  638

295) M636_10830 in NC_021848


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  523 bits (1973),  Expect = 2e-149, Method: Compositional matrix adjust.
 Identities = 384/621 (62%), Positives = 492/621 (80%), Gaps = 8/621 (1%)

Query  26   WGASNNNTMLMNTARPLSWSMFIMLFFSFVILCWGFYTNDFTLQYVASNSNSQLPWYYRL  85
            WG +  ++ +M +A  ++W +FI +  +F +L  +F  NDFT+ YVA+NSN+QLP  YR+
Sbjct  26   WGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRV  85

Query  86   TAVWGAHEGSLLLWVLIQAGWTVAVATFSRGMPQESVARVLAVMGMISVGFLLFIILTSN  145
            +A WGAHEGSLLLWVL+ +GWT+AVA FSR +P + VARVLAVMGM+  GFL FI++TS 
Sbjct  86   AATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSG  145

Query  146  PFLRTLPFFPVDGRDLNPLLQDPGLIVHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWA  205
            PF RTLP FPV+GRDLNPLLQDPGLI HPP+LYMGYVGFSVAF+FAIA+L++GRLD+A +
Sbjct  146  PFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFT  205

Query  206  RWSRPWTTAAWVFLTLGIALGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAV  265
            R +RPWT AAWVFLTLGI LGS WAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS+AV
Sbjct  206  RFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAV  265

Query  266  TEKRGTFKAWTVllaisafslsllGTFLVRSGILVSVHAFASDPSRGMFILGFLVFVIGG  325
            TE+R+ FKAWT+LL+I AFSL LLGTFLVRSG+LVSVHAFASDP+RGMFIL+F+V+V GG
Sbjct  266  TEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGG  325

Query  326  SLLLFAVKGAAVRVRGNFDLVSREnallannvlliaalvvvlvgtllplvHKQLGLGSVS  385
            SLLLFAV+G  VR R N  L SRE+ LL+NNVLL+AA++VVL+GTLLPLVHKQLGLGS+S
Sbjct  326  SLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSIS  385

Query  386  IGAPFFDMLFAWLMMPFAFLLGIGPLIRWKRDQLSSIVKPMLVSGTvslalaavcvflfa  445
            +G PFF+ +F+WLM+PFA+LLG+GPL+RW RD+  +I K +  +   +L L+ +   L+ 
Sbjct  386  VGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLE  445

Query  446  dffSVMAYIGWVMSIWIVAMHAFELHERATHRHSFAEGVRKLQRSHWAMMFGHIGLAVTI  505
            D +  M+ +G  M+ WI  +   E  +R ++         K   S W+M+ +H+GLAVTI
Sbjct  446  DKIIAMTAVGMAMACWIAVLAVAEAVQRVSR-------GTKTSLSYWGMVAAHLGLAVTI  498

Query  506  IGIAMVQNYSIERDVRLAPGEHFQIEGYDFYFSGLRDKDGPNYDGYIADFEITHDGKYIN  565
             GIA  QNYS+ERDVR+ +G+   I++Y F F  +RD  GPNY G +A + +T++G    
Sbjct  499  TGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEA  558

Query  566  TLHAEKRFYRTAKSMMTEAAIDRGITRDLYIAMGERLEDNRSWAVRIYYKPFVRWIWAGS  625
             LHAEKR+Y T++ +MTEAAID G+TRDLY A+GE L++  +WAVR+YYKPFVRWIWAG+
Sbjct  559  VLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG-AWAVRLYYKPFVRWIWAGG  617

Query  626  LIMALGGALAISDKRYRFRKS  646
            L+MALGG L ++D RYR RK+
Sbjct  618  LLMALGGLLCLADPRYRRRKP  638

296) K734_05540 in NC_021286


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  520 bits (1963),  Expect = 1e-148, Method: Compositional matrix adjust.
 Identities = 367/643 (58%), Positives = 509/643 (80%), Gaps = 7/643 (1%)

Query  1    MIAEAGHLAIAIALAFSVLLAVYPLWGAAKGNGGMMALARPFAYGQFFFTAIAFALLVWG  60
            M++E GH  + +AL+ ++LL+VYPLWG A+G++ MMA A  FA   F+  A AF +LV +
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVSNDFSIAYVAANSNSQLPVAYRVTAVWGSHEGSFLLWMLMQAGWIAAVAIFSRSMPLP  120
            FV NDF++AYVA+NSN+QLPV YRV+A WG+HEGS+LLW+L+ +GW  AVA+FSR +P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MIARVLAILGLVSIGFYLFMLTVSNPFDPSLPLIPVDGRDLNPLLQDPGMIIHPPLLYMG  180
            ++ARVLA++G+V  GF  F+L  S PF  +LP +PV+GRDLNPLLQDPG+I+HPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALMSGKLDAAWARWSRPWTLAAWIFLTLGIAIGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIAAL+SG+LD+A +R +RPWTLAAW+FLTLGI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALLHSLAVTEKRGSFKSWTVllaisafslsllGTFLVRSGVLV  300
            FWDPVENASFMPWL GTALLHS+AVTE+R++FK+WT+LL+I AFSL LLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFATDPARglfilillglvvggslilyglRAGKMQSYSRYELLSREVMLLGNNVLLM  360
            SVHAFA+DPARG+FIL ++ LV GGSL+L+++R+ +++S     L SRE +LLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  AAMIVVFLGTMLPLVHKEIGLGTISIGAPFFNELYSWLVIPFALMLGLGPLMRWRRQAMQ  420
            AAM+VV+LGT+LPLVHK++GLG+IS+G PFFN +++WL++PFAL+LG+GPL+RW R+  +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  PllkplalalslalilaytlPKIWADELPALVVIALFLAFWVALATLTEVQQTVKQRKQG  480
             + K L  A+  +L+L+  LP +  D + A+  +++ +A W+A+ +++E  Q V +    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG---  477

Query  481  WAGLTKISGSHWGMVLGHLGFAVTLIGITLVSNYEQERDIALAPGQSVDVIGYNVVFESL  540
                TK S S WGMV +HLG+AVT+ GI++  NY  ERD+ + +G+SV + +Y   F  +
Sbjct  478  ----TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  QHREGPNYDADQGVFTVYKDGQEVTQLTSEKRFYRVQRTSMTEVGLDASLLRDIYIAMGE  600
            ++  GPNY ++ +++ V ++G+  + L +EKR+Y   R  MTE ++D++L RD+Y A+GE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  PLDDETWAIRFYIKPFVRWVWLgaiimaiggamaFADKRYRKR  643
             LD+ +WA+R+Y KPFVRW+W G+++MA+GG + +AD RYR+R
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

297) ccmF in NC_006512


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  520 bits (1963),  Expect = 1e-148, Method: Compositional matrix adjust.
 Identities = 367/643 (58%), Positives = 509/643 (80%), Gaps = 7/643 (1%)

Query  1    MIAEAGHLAIAIALAFSVLLAVYPLWGAAKGNGGMMALARPFAYGQFFFTAIAFALLVWG  60
            M++E GH  + +AL+ ++LL+VYPLWG A+G++ MMA A  FA   F+  A AF +LV +
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVSNDFSIAYVAANSNSQLPVAYRVTAVWGSHEGSFLLWMLMQAGWIAAVAIFSRSMPLP  120
            FV NDF++AYVA+NSN+QLPV YRV+A WG+HEGS+LLW+L+ +GW  AVA+FSR +P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MIARVLAILGLVSIGFYLFMLTVSNPFDPSLPLIPVDGRDLNPLLQDPGMIIHPPLLYMG  180
            ++ARVLA++G+V  GF  F+L  S PF  +LP +PV+GRDLNPLLQDPG+I+HPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALMSGKLDAAWARWSRPWTLAAWIFLTLGIAIGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIAAL+SG+LD+A +R +RPWTLAAW+FLTLGI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALLHSLAVTEKRGSFKSWTVllaisafslsllGTFLVRSGVLV  300
            FWDPVENASFMPWL GTALLHS+AVTE+R++FK+WT+LL+I AFSL LLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFATDPARglfilillglvvggslilyglRAGKMQSYSRYELLSREVMLLGNNVLLM  360
            SVHAFA+DPARG+FIL ++ LV GGSL+L+++R+ +++S     L SRE +LLGNNVLLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  AAMIVVFLGTMLPLVHKEIGLGTISIGAPFFNELYSWLVIPFALMLGLGPLMRWRRQAMQ  420
            AAM+VV+LGT+LPLVHK++GLG+IS+G PFFN +++WL++PFAL+LG+GPL+RW R+  +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  PllkplalalslalilaytlPKIWADELPALVVIALFLAFWVALATLTEVQQTVKQRKQG  480
             + K L  A+  +L+L+  LP +  D + A+  +++ +A W+A+ +++E  Q V +    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG---  477

Query  481  WAGLTKISGSHWGMVLGHLGFAVTLIGITLVSNYEQERDIALAPGQSVDVIGYNVVFESL  540
                TK S S WGMV +HLG+AVT+ GI++  NY  ERD+ + +G+SV + +Y   F  +
Sbjct  478  ----TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  QHREGPNYDADQGVFTVYKDGQEVTQLTSEKRFYRVQRTSMTEVGLDASLLRDIYIAMGE  600
            ++  GPNY ++ +++ V ++G+  + L +EKR+Y   R  MTE ++D++L RD+Y A+GE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  PLDDETWAIRFYIKPFVRWVWLgaiimaiggamaFADKRYRKR  643
             LD+ +WA+R+Y KPFVRW+W G+++MA+GG + +AD RYR+R
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

298) ASU2_10960 in NC_018690


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  520 bits (1960),  Expect = 2e-148, Method: Compositional matrix adjust.
 Identities = 382/615 (63%), Positives = 495/615 (81%), Gaps = 7/615 (1%)

Query  29   QKGNITLMSLARPMTWGMFLALTISFGSLFYLFAVNDFSVQYVVNNSNSTLPLQYRLSAV  88
             +G+  +M+ A   +W +F+ ++ +F  L   F VNDF+V YV  NSN+ LP+ YR++A 
Sbjct  29   ARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAAT  88

Query  89   WGSHEGslllwiwllslwavavaaFSRQMPEEAVARVlsimglisigfllfiifssNPFD  148
            WG+HEGSLLLW+ L+S W++AVA FSRQ+P + VARVL++MG++  GFL FI+F+S PF 
Sbjct  89   WGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFA  148

Query  149  RTFPNFPADGRELNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGRLDTAWARWS  208
            RT+P FP +GR+LNP+LQD GLIFHPPLLYMGYVGFSVAFAFAIA+L++GRLD+A +R +
Sbjct  149  RTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFA  208

Query  209  RPWTMAAWVFLTLGIVLGSWWAYYELGWGGWWFWDPVENASLMPWIAGTALIHSLAVTEK  268
            RPWT+AAWVFLTLGIVLGS WAYYELGWGGWWFWDPVENAS+MPW+AGTAL+HS+AVTE+
Sbjct  209  RPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQ  268

Query  269  RSTFKAWTVllailafslcllGTFLVRSGILVSVHAFASDPTRGLYILAYLVLVIGGSLL  328
            R+ FKAWT+LL+I AFSLCLLGTFLVRSG+LVSVHAFASDP+RG++ILA++VLV GGSLL
Sbjct  269  RAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLL  328

Query  329  LYAFQGSKIKSLDNYERYSRESMLLINNILLMAFLSVVFLGTILPLIHKQIGLGSISIGA  388
            L+A +G +++S  N    SRES+LL NN+LLMA + VV+LGT+LPL+HKQ+GLGSIS+G 
Sbjct  329  LFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGE  388

Query  389  PFFDQMFVILMVPFAFILGIGPLVKWRRDQISAIRTPVLISLVLMTVLGFALPYLFADRI  448
            PFF+ MF  LMVPFA++LG+GPLV+W RD+   IR  +  ++V   VL+  LP L+ D+I
Sbjct  389  PFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKI  448

Query  449  TATSVLGVMMAAIIVILSLYELHQRATHRHTFFSGIFKLSRSHWGMVLAHVGVAMTVFGI  508
             A + +G+ MA  I +L++ E  QR ++         K S S WGMV AH+G+A+T+ GI
Sbjct  449  IAMTAVGMAMACWIAVLAVAEAVQRVSRGT-------KTSLSYWGMVAAHLGLAVTITGI  501

Query  509  AFSQNFSIEKDVRMNVGDQVQILDYNFEFKGIKITDGVNYQGGTAEIAITKNGEYEATLN  568
            AFSQN+S+E+DVRM  GD V I DY F F+ ++   G NY+GG A I++T++GE EA L+
Sbjct  502  AFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLH  561

Query  569  AEKRFYNVSKMGMTEAAIDWGFSRDLYAALGEKLEDGSWGVRLYYKPFIRWIWlgglfma  628
            AEKR+YN S+M MTEAAID G++RDLYAALGE L++G+W+VRLYYKPF+RWIW GGL+MA
Sbjct  562  AEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMA  621

Query  629  lggllcmmDKRYRVR  643
            LGGLLC+ D RYR R
Sbjct  622  LGGLLCLADPRYRRR  636

299) ambt_13910 in NC_015554


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  520 bits (1960),  Expect = 2e-148, Method: Compositional matrix adjust.
 Identities = 362/647 (56%), Positives = 500/647 (78%), Gaps = 11/647 (1%)

Query  1    MVPEIGNialtlalvlsillavYPLWGAHRQHDTLMATAKPLAIGLFVFTLIAYLCLTYA  60
            M+PE G+  L LAL +++LL+VYPLWG  R +  +MA+A  +A  LF+    A++ L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVTDDFSVEYVAQHSNSQLPLVYKITAVWGGHEGSFLLWVLMLSIWTVAVAIFSRGIPLT  120
            FV +DF+V YVA +SN+QLP+ Y+++A WG+HEGS+LLWVL++S WT+AVA+FSR +P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MVARVLSVLGMVGIGFYLFMLLTSNPFNSMLPFFPVDGRDLNPLLQDFGMIIHPPMLYMG  180
            +VARVL+V+GMV  GF  F+L+TS PF   LP FPV+GRDLNPLLQD G+I+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAISALISGQLDSTWARWARPWVIAAWAFLTVGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAI+AL+SG+LDS+ +R ARPW +AAW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEKRKAFKSWTVllaiaafslsllGTFLVRSGVIV  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R +FK+WT+LL+I AFSL LLGTFLVRSGV+V
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPTRGLFILGILIVLSGFGLLLYAMRASALKSPGRYQAFSREVLLMGNNVFlc  360
            SVH+FASDP+RG+FIL+++++++G +LLL+A+R+  ++S       SRE LL+GNNV+L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aatlvvllgtllplvHKELGLGSISVGAPFFNQMFTLLIVPFVLFLGLGPLTRWKHQTAG  420
            AA LVVLLGTLLPLVHK+LGLGSISVG PFFN MFT L+VPF L+LG+GPL RW ++ + 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  ALKNQLLVAGGIAISAALLVNFSYDTPQY-MGVLGMILVFWILITTVQEVLQRVNANPSN  479
             +++ L  A   ++  ++L+    +     M  +GM +  WI + +V E +QRV+     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  480  TSTFTKLRKLTPSHWGMVLGHIGFAISIIGITLVSNYELERDVRMEVGETVELGGYAFTF  539
            + ++          WGMV +H+G+A++I GI++  NY +ERDVRM  G++V + +Y FTF
Sbjct  481  SLSY----------WGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTF  530

Query  540  TDIKPFQGPNYTADVGVFDVNRADEFVVHLEPEKRMYTVQRMPMTEAAIHSTVSRDLFIA  599
             +++ + GPNY ++V++++V R +E    L++EKR+Y   RM MTEAAI++ ++RDL+ A
Sbjct  531  REVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAA  590

Query  600  MGEPLDDGAWAVRIYIKPFVAWLWAGAVVMAIGGIFSISDKRYRMTK  646
            +GE LD+GAWAVR+Y KPFV W+WAG+++MA+GG++ ++D RYR  K
Sbjct  591  LGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

300) AMBAS45_04530 in NC_018679


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  519 bits (1957),  Expect = 3e-148, Method: Compositional matrix adjust.
 Identities = 368/651 (57%), Positives = 504/651 (78%), Gaps = 15/651 (2%)

Query  1    MVPEIGNialtlalvlsillavYPLWGAHRQHEALMATAKPLAIGLFTFTLIAYVCLTYA  60
            M+PE G+  L LAL +++LL+VYPLWG  R +  +MA+A  +A  LF     A+  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVTDDFSVAYVAQHSNSRLPIYYKITAVWGGHEGSFLLWVLMLSIWTVAVAIFSKGIPLA  120
            FV +DF+VAYVA +SN++LP+ Y+++A WG+HEGS+LLWVL++S WT+AVA+FS+ +P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MVARVLSVLGMVGIGFYLFMLLTSNPFNSMLPFFPVDGRDLNPLLQDFGMIIHPPMLYMG  180
            +VARVL+V+GMV  GF  F+L+TS PF   LP FPV+GRDLNPLLQD G+I+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAISALISGQLDSTWARWSRPWVISAWAFLTVGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAI+AL+SG+LDS+ +R +RPW ++AW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEKRKAFKSWTVllaiaafslsllGTFLVRSGVIV  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R +FK+WT+LL+I AFSL LLGTFLVRSGV+V
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPTRGLFILGILIVLSGFGLLLYAMRAASLKSPGRYQAFSREVLLMGNNVFlc  360
            SVH+FASDP+RG+FIL+++++++G +LLL+A+R+  ++S       SRE LL+GNNV+L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aatlvvllgtllplvHKELGLGSISVGAPFFNQMFTLLIVPFVLMLGLGPLTRWKQQKAS  420
            AA LVVLLGTLLPLVHK+LGLGSISVG PFFN MFT L+VPF L+LG+GPL RW ++++ 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  ELQKQLLIAGGIALSAGVLVNFAYDEPTY-MGVLGMVLVFWILVTTVQEVMQRLSAMPSS  479
            +++K L  A   +L  +VL+    ++    M  +GM +  WI V +V E +QR       
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQR-------  473

Query  480  NSDNASVLSKLRKLTPSHWGMVFGHVGFAICIIGITLVSNYEMERDVRMDIGDTVSLGGY  539
                   +S+  K + S WGMV +H+G+A+ I GI++  NY +ERDVRM  GD+V++ +Y
Sbjct  474  -------VSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  540  DFSFRDVVKVQGPNFEADKGVFDVYQDGELIAHLEPEKRLYIVQRMPMTEAAIHSNLARD  599
             F+FR+V  + GPN+ ++ ++++V ++GE  A L++EKRLY   RM MTEAAI++ L+RD
Sbjct  527  RFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  600  LFIAMGEPLDNGAWAIRIYIKPFVIWLWAGAVVMAIGGIFSISDKRYRMAK  650
            L+ A+GE LDNGAWA+R+Y KPFV W+WAG+++MA+GG++ ++D RYR  K
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

301) AMBLS11_04365 in NC_018692


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  517 bits (1952),  Expect = 7e-148, Method: Compositional matrix adjust.
 Identities = 368/651 (57%), Positives = 502/651 (78%), Gaps = 15/651 (2%)

Query  1    MVPEIGNialtlalvlsillavYPLWGAHRQHEALMATAKPLAIGLFTFTLIAYVCLTYA  60
            M+PE G+  L LAL +++LL+VYPLWG  R +  +MA+A  +A  LF     A+  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVTDDFSVAYVAQHSNSRLPIYYKITAVWGGHEGSFLLWVLMLSIWTVAVAIFSKGIPLA  120
            FV +DF+VAYVA +SN++LP+ Y+++A WG+HEGS+LLWVL++S WT+AVA+FS+ +P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MVARVLSVLGMVGIGFYLFMLLTSNPFNSMLPFFPVDGRDLNPLLQDFGMIIHPPMLYMG  180
            +VARVL+V+GMV  GF  F+L+TS PF   LP FPV+GRDLNPLLQD G+I+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAISALISGQLDSTWARWSRPWVISAWAFLTVGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAI+AL+SG+LDS+ +R +RPW ++AW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEKRKAFKSWTVllaiaafslsllGTFLVRSGVIV  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R +FK+WT+LL+I AFSL LLGTFLVRSGV+V
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPTRGLFILGILIVLSGFGLLLYAMRAASLKSPGRYQAFSREVLLMGNNVFlc  360
            SVH+FASDP+RG+FIL+++++++G +LLL+A+R+  ++S       SRE LL+GNNV+L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aatlvvllgtllplvHKELGLGSISVGAPFFNQMFTLLIVPFVLMLGLGPLTRWKQQKAS  420
            AA LVVLLGTLLPLVHK+LGLGSISVG PFFN MFT L+VPF L+LG+GPL RW ++++ 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  ELQKQLLIAGGIALSAGVLVNFAYDEPTY-MGVLGMVLVFWILVTTVQEVMQRLSAMPSS  479
            +++K L  A   +L  +VL+    ++    M  +GM +  WI V +V E +QR       
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQR-------  473

Query  480  NSDNASVLSKLRKLTPSHWGMVLGHVGFAICIIGITLVSNYEMERDVRMDIGDTVSLGDY  539
                   +S+  K + S WGMV +H+G+A+ I GI++  NY +ERDVRM  GD+V++ DY
Sbjct  474  -------VSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  540  DFSFRDVVKVQGPNFEADKGVFDVYQDGELIAHLEPEKRLYIVQRMPMTEAAIHSNPIRD  599
             F+FR+V  + GPN+ ++ ++++V ++GE  A L++EKRLY   RM MTEAAI++   RD
Sbjct  527  RFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  600  LFIAMGEPLDNGAWAIRIYIKPFVIWLWAGAVVMAIGGIFSISDKRYRMAK  650
            L+ A+GE LDNGAWA+R+Y KPFV W+WAG+++MA+GG++ ++D RYR  K
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

302) I633_04770 in NC_021716


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  517 bits (1951),  Expect = 8e-148, Method: Compositional matrix adjust.
 Identities = 359/629 (58%), Positives = 487/629 (78%), Gaps = 15/629 (2%)

Query  1    MVPEIGNialtlalvlsillavYPLWGAHRKHEALMATAKPLAIGLFTFTLIAYVCLTYA  60
            M+PE G+  L LAL +++LL+VYPLWG  R +  +MA+A  +A  LF     A+  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVTDDFSVAYVAQHSNSRLPIYYKITAVWGGHEGSFLLWVLMLSIWTVAVAIFSKGIPLA  120
            FV +DF+VAYVA +SN++LP+ Y+++A WG+HEGS+LLWVL++S WT+AVA+FS+ +P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MVARVLSVLGMVGIGFYLFMLLTSNPFDSMLPFFPVDGRDLNPLLQDFGMIIHPPMLYMG  180
            +VARVL+V+GMV  GF  F+L+TS PF   LP FPV+GRDLNPLLQD G+I+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAISALISGQLDSTWARWSRPWVIAAWAFLTVGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAI+AL+SG+LDS+ +R +RPW +AAW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEKRKAFKSWTVllaiaafslsllGTFLVRSGVIV  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R +FK+WT+LL+I AFSL LLGTFLVRSGV+V
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPTRGLFILGILIVLSGFGLLLYAMRAASLKSPGRYQAFSREVLLMGNNVFlc  360
            SVH+FASDP+RG+FIL+++++++G +LLL+A+R+  ++S       SRE LL+GNNV+L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aatlvvllgtllplvHKELGLGSISVGAPFFNQMFTLLIVPFVLMLGLGPLTRWKQQKAS  420
            AA LVVLLGTLLPLVHK+LGLGSISVG PFFN MFT L+VPF L+LG+GPL RW ++++ 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  ELQKQLLVAGGIALSAGVLVNFAYDEPTY-MGVLGMVLVFWILVTTVQEVMQRLAAMPSS  479
            +++K L  A   +L  +VL+    ++    M  +GM +  WI V +V E +QR       
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQR-------  473

Query  480  NTENASVIAKLRKLTPSHWGMVLGHVGFAICIIGITLVSNYELERDVRMDIGDTVSLGGY  539
                   +++  K + S WGMV +H+G+A+ I GI++  NY +ERDVRM  GD+V++ +Y
Sbjct  474  -------VSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  540  DFSFRDVRKVEGPNFNADKGIFDVYKNGEMIAHLEPEKRLYIVQRMPMTEAAIHSNLARD  599
             F+FR+VR + GPN+ ++ ++++V ++GE  A L++EKRLY   RM MTEAAI++ L+RD
Sbjct  527  RFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  600  LFIAMGEPLDNGAWAIRIYIKPFVIWLWA  628
            L+ A+GE LDNGAWA+R+Y KPFV W+WA
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIWA  615

303) ccmF-1 in NC_008570


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  516 bits (1946),  Expect = 2e-147, Method: Compositional matrix adjust.
 Identities = 397/641 (62%), Positives = 525/641 (82%), Gaps = 7/641 (1%)

Query  1    MIPELGQFSLILAFATALLLGSYPLLGAKWGRLGMMSAARPlayaqflllllsflcltwa  60
            M+PE G+  L LA++ ALLL+ YPL G  +G   MM++A  +A   F+ +  +F+ L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   fIDNDFTVQYVATNSNSLLPLAYRISAVWGAHEGSlllwvltlggwtAAVAMFSRRLPLD  120
            F+ NDFTV YVA NSN+ LP+ YR++A WGAHEGSLLLWVL ++GWT AVA+FSR++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLGVLGLISVGFTAFVLFTSDPFIRTLPYFPVDGRDLNPLLQDPGLIFHPPMLYMG  180
             VARVL+V+G++  GF AF+LFTS+PF RTLP FPV+GRDLNPLLQDPGLIFHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMTGRLDATWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLD++ +R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVSEKRATFKAWTVllalsafslsllGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AV+E+RA FKAWT+LL++ AFSL LLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPTRGLFILGFLLAVIGSSLLLFAFKGSQVRSHGKHELWSRETLLLCNNIMlv  360
            SVHAFASDP+RG+FIL+F++ V G+SLLLFA +G +VRS+ ++ LWSRE+LLL NN++L+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aglltvllgtllplvHKELGLGSISIGTPFFNHIYSWLIIPFALLLGVGPLFRWRRQELG  420
            A++L VLLGTLLPLVHK+LGLGSIS+G PFFN +++WL++PFALLLGVGPL RW R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  ELKGKvvlalvlslaaaillplllaEEFKPWAALGIGLGAWIIVTSVQETWVRATHKHSF  480
            +++  +  A+V +L  ++LLP LL + + + +A+G++++ WI V +V E+ V+   + + 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEA-VQRVSRGT-  478

Query  481  AVGVRRLGNSHWAMILGHVGLAVSIIGIACTQNYSIEKDLRMQAGDRVQFADYEFVFTGI  540
                 + + S W+M+ +H+GLAV+I GIA +QNYS+E+D+RM+AGD V + DY F F  +
Sbjct  479  -----KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  KEKNGPNYDGFKGVLEVHKDGKQVALLKPEKRMYKVTRMPMTEAAIDAGFTRDLYAALGE  600
            ++  GPNY G  +++ V ++G   A+L +EKR+Y+ +RM MTEAAID+G+TRDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  QLDSGAWAVRIYYKPFVRWIWFGGVFMAIGGVLAMLDKRYR  641
            +LD+GAWAVR+YYKPFVRWIW GG++MA+GG+L + D RYR
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

304) AHML_07565 in NC_021290


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  516 bits (1946),  Expect = 2e-147, Method: Compositional matrix adjust.
 Identities = 397/641 (62%), Positives = 525/641 (82%), Gaps = 7/641 (1%)

Query  1    MIPELGQFSLILAFATALLLGSYPLLGAKWGRLGMMSAARPlayaqflllllsflcltwa  60
            M+PE G+  L LA++ ALLL+ YPL G  +G   MM++A  +A   F+ +  +F+ L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   fIDNDFTVQYVATNSNSLLPLAYRISAVWGAHEGSlllwvltlggwtAAVAMFSRRLPLD  120
            F+ NDFTV YVA NSN+ LP+ YR++A WGAHEGSLLLWVL ++GWT AVA+FSR++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLGVLGLISVGFTAFVLFTSDPFIRTLPYFPVDGRDLNPLLQDPGLIFHPPMLYMG  180
             VARVL+V+G++  GF AF+LFTS+PF RTLP FPV+GRDLNPLLQDPGLIFHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMTGRLDATWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLD++ +R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALLHSLAVSEKRATFKAWTVllalsafslsllGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTALLHS+AV+E+RA FKAWT+LL++ AFSL LLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPTRGLFILGFLLAVIGSSLLLFAFKGSQVRSHGKHELWSRETLLLCNNIMlv  360
            SVHAFASDP+RG+FIL+F++ V G+SLLLFA +G +VRS+ ++ LWSRE+LLL NN++L+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aglltvllgtllplvHKELGLGSISIGTPFFNHIYSWLIIPFALLLGVGPLFRWRRQELG  420
            A++L VLLGTLLPLVHK+LGLGSIS+G PFFN +++WL++PFALLLGVGPL RW R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  ELKGKvvlalvlslaaaillplllaEEFKPWAALGIGLGAWIIVTSVQETWVRATHKHSF  480
            +++  +  A+V +L  ++LLP LL + + + +A+G++++ WI V +V E+ V+   + + 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEA-VQRVSRGT-  478

Query  481  AVGVRRLGNSHWAMILGHVGLAVSIIGIACTQNYSIEKDLRMQAGDRVQFADYEFVFTGI  540
                 + + S W+M+ +H+GLAV+I GIA +QNYS+E+D+RM+AGD V + DY F F  +
Sbjct  479  -----KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  KEKNGPNYDGFKGVLEVHKDGKQVALLKPEKRMYKVTRMPMTEAAIDAGFTRDLYAALGE  600
            ++  GPNY G  +++ V ++G   A+L +EKR+Y+ +RM MTEAAID+G+TRDLYAALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  QLDSGAWAVRIYYKPFVRWIWFGGVFMAIGGVLAMLDKRYR  641
            +LD+GAWAVR+YYKPFVRWIW GG++MA+GG+L + D RYR
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

305) M892_15410 in NC_022269


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  516 bits (1947),  Expect = 2e-147, Method: Compositional matrix adjust.
 Identities = 380/621 (62%), Positives = 489/621 (79%), Gaps = 8/621 (1%)

Query  26   WGASNNNTMLMNTARPLSWSMFVMLFFSFVILCWGFYTNDFTLQYVASNSNSQLPWYYRL  85
            WG +  ++ +M +A  ++W +F+ +  +F +L  +F  NDFT+ YVA+NSN+QLP  YR+
Sbjct  26   WGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRV  85

Query  86   TAVWGAHEGSLLLWVLIQAAWTVAVATFSRGMPQESVARVLAVMGMISVGFLLFIILTSN  145
            +A WGAHEGSLLLWVL+ ++WT+AVA FSR +P + VARVLAVMGM+  GFL FI++TS 
Sbjct  86   AATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSG  145

Query  146  PFLRTLPFFPVDGRDLNPLLQDPGLIVHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWA  205
            PF RTLP FPV+GRDLNPLLQDPGLI HPP+LYMGYVGFSVAF+FAIA+L++GRLD+A +
Sbjct  146  PFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFT  205

Query  206  RWSRPWTTAAWVFLTLGIALGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAV  265
            R +RPWT AAWVFLTLGI LGS WAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS+AV
Sbjct  206  RFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAV  265

Query  266  TEKRGTFKAWTVllaisafslsllGTFLVRSGILVSVHAFASDPSRGMFILGFLVFVIGG  325
            TE+R+ FKAWT+LL+I AFSL LLGTFLVRSG+LVSVHAFASDP+RGMFIL+F+V+V GG
Sbjct  266  TEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGG  325

Query  326  SLLLFAVKGAAVRVRGNFDLVSREnallannvlliaalvvvlvgtllplvHKQIGLGSVS  385
            SLLLFAV+G  VR R N  L SRE+ LL+NNVLL+AA++VVL+GTLLPLVHKQ+GLGS+S
Sbjct  326  SLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSIS  385

Query  386  IGAPFFDMLFAWLMVPFAFLLGIGPMIRWKRDNLSKLVKPMIVSGvlafalaavcvflfa  445
            +G PFF+ +F+WLMVPFA+LLG+GP++RW RD   ++ K +  + V ++ L+ +   L+ 
Sbjct  386  VGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLE  445

Query  446  dffSVMAYIGWVMAIWIIAMHGFELYERATHRHSFGEGVRKLQRSHWAMMLGHIGLAVTV  505
            D +  M+ +G  MA WI  +   E  +R ++         K   S W+M+ +H+GLAVT+
Sbjct  446  DKIIAMTAVGMAMACWIAVLAVAEAVQRVSR-------GTKTSLSYWGMVAAHLGLAVTI  498

Query  506  IGIAMVQNYSIERDVRLAPGEHFKIYGYDFYFSGLRDKDGPNYDGYIADFEITNDGKYVN  565
             GIA  QNYS+ERDVR+ +G+   I +Y F F  +RD  GPNY G +A + +T +G    
Sbjct  499  TGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEA  558

Query  566  TLHAEKRFYRTAKSMMTEAAIDRGITRDLYIAMGERLDDNRSWAVRIYYKPFVRWIWAGS  625
             LHAEKR+Y T++ +MTEAAID G+TRDLY A+GE LD+  +WAVR+YYKPFVRWIWAG+
Sbjct  559  VLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG-AWAVRLYYKPFVRWIWAGG  617

Query  626  LIMSLGGALAISDRRYRFRKT  646
            L+M+LGG L ++D RYR RK 
Sbjct  618  LLMALGGLLCLADPRYRRRKP  638

306) VIBHAR_03130 in NC_009783


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  516 bits (1947),  Expect = 2e-147, Method: Compositional matrix adjust.
 Identities = 380/621 (62%), Positives = 489/621 (79%), Gaps = 8/621 (1%)

Query  26   WGASNNNTMLMNTARPLSWSMFVMLFFSFVILCWGFYTNDFTLQYVASNSNSQLPWYYRL  85
            WG +  ++ +M +A  ++W +F+ +  +F +L  +F  NDFT+ YVA+NSN+QLP  YR+
Sbjct  26   WGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRV  85

Query  86   TAVWGAHEGSLLLWVLIQAAWTVAVATFSRGMPQESVARVLAVMGMISVGFLLFIILTSN  145
            +A WGAHEGSLLLWVL+ ++WT+AVA FSR +P + VARVLAVMGM+  GFL FI++TS 
Sbjct  86   AATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSG  145

Query  146  PFLRTLPFFPVDGRDLNPLLQDPGLIVHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWA  205
            PF RTLP FPV+GRDLNPLLQDPGLI HPP+LYMGYVGFSVAF+FAIA+L++GRLD+A +
Sbjct  146  PFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFT  205

Query  206  RWSRPWTTAAWVFLTLGIALGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAV  265
            R +RPWT AAWVFLTLGI LGS WAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS+AV
Sbjct  206  RFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAV  265

Query  266  TEKRGTFKAWTVllaisafslsllGTFLVRSGILVSVHAFASDPSRGMFILGFLVFVIGG  325
            TE+R+ FKAWT+LL+I AFSL LLGTFLVRSG+LVSVHAFASDP+RGMFIL+F+V+V GG
Sbjct  266  TEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGG  325

Query  326  SLLLFAVKGAAVRVRGNFDLVSREnallannvlliaalvvvlvgtllplvHKQIGLGSVS  385
            SLLLFAV+G  VR R N  L SRE+ LL+NNVLL+AA++VVL+GTLLPLVHKQ+GLGS+S
Sbjct  326  SLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSIS  385

Query  386  IGAPFFDMLFAWLMVPFAFLLGIGPMIRWKRDNLSKLVKPMIVSGvlafalaavcvflfa  445
            +G PFF+ +F+WLMVPFA+LLG+GP++RW RD   ++ K +  + V ++ L+ +   L+ 
Sbjct  386  VGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLE  445

Query  446  dffSVMAYIGWVMAIWIIAMHGFELYERATHRHSFGEGVRKLQRSHWAMMLGHIGLAVTV  505
            D +  M+ +G  MA WI  +   E  +R ++         K   S W+M+ +H+GLAVT+
Sbjct  446  DKIIAMTAVGMAMACWIAVLAVAEAVQRVSR-------GTKTSLSYWGMVAAHLGLAVTI  498

Query  506  IGIAMVQNYSIERDVRLAPGEHFKIYGYDFYFSGLRDKDGPNYDGYIADFEITNDGKYVN  565
             GIA  QNYS+ERDVR+ +G+   I +Y F F  +RD  GPNY G +A + +T +G    
Sbjct  499  TGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEA  558

Query  566  TLHAEKRFYRTAKSMMTEAAIDRGITRDLYIAMGERLDDNRSWAVRIYYKPFVRWIWAGS  625
             LHAEKR+Y T++ +MTEAAID G+TRDLY A+GE LD+  +WAVR+YYKPFVRWIWAG+
Sbjct  559  VLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG-AWAVRLYYKPFVRWIWAGG  617

Query  626  LIMSLGGALAISDRRYRFRKT  646
            L+M+LGG L ++D RYR RK 
Sbjct  618  LLMALGGLLCLADPRYRRRKP  638

307) AMEC673_04380 in NC_018678


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  515 bits (1944),  Expect = 3e-147, Method: Compositional matrix adjust.
 Identities = 367/651 (57%), Positives = 502/651 (78%), Gaps = 15/651 (2%)

Query  1    MVPEIGNialtlalvlsillavYPLWGAHRQHEALMATAKPLAIGLFTFTLIAYVCLTYA  60
            M+PE G+  L LAL +++LL+VYPLWG  R +  +MA+A  +A  LF     A+  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVTDDFSVAYVAQHSNSRLPIYYKITAVWGGHEGSFLLWVLMLSIWTVAVAIFSKGIPLA  120
            FV +DF+VAYVA +SN++LP+ Y+++A WG+HEGS+LLWVL++S WT+AVA+FS+ +P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MVARVLSVLGMVGIGFYLFMLLTSNPFNSMLPFFPVDGRDLNPLLQDFGMIIHPPMLYMG  180
            +VARVL+V+GMV  GF  F+L+TS PF   LP FPV+GRDLNPLLQD G+I+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAISALISGQLDSTWARWSRPWVISAWAFLTVGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAI+AL+SG+LDS+ +R +RPW ++AW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEKRKAFKSWTVllaiaafslsllGTFLVRSGVIV  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R +FK+WT+LL+I AFSL LLGTFLVRSGV+V
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPTRGLFILGILIVLSGFGLLLYAMRAASLKSPGRYQAFSREVLLMGNNVFlc  360
            SVH+FASDP+RG+FIL+++++++G +LLL+A+R+  ++S       SRE LL+GNNV+L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aatlvvllgtllplvHKELGLGSISVGAPFFNQMFTLLIVPFVLMLGLGPLTRWKQQKAS  420
            AA LVVLLGTLLPLVHK+LGLGSISVG PFFN MFT L+VPF L+LG+GPL RW ++++ 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  ELQKQLLIAGGIALSAGVLVNFAYDEPTY-MGVLGMILVFWILVTTVQEVMQRLSAMPSG  479
            +++K L  A   +L  +VL+    ++    M  +GM +  WI V +V E +QR+S     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  480  NSDNASVLVKLRKLTPSHWGMVLGHVGFAICIIGITLVSNYEMERDVRMDIGDTVSLGGY  539
                     +  K + S WGMV +H+G+A+ I GI++  NY +ERDVRM  GD+V++ +Y
Sbjct  476  ---------RGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  540  DFSFRDVVKVQGPNFEADKGVFDVYQDGELIAHLEPEKRLYIVQRMPMTEAAIHSNPIRD  599
             F+FR+V  + GPN+ ++ ++++V ++GE  A L++EKRLY   RM MTEAAI++   RD
Sbjct  527  RFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  600  LFIAMGEPLDNGAWAIRIYIKPFVIWLWAGAVVMAIGGIFSISDKRYRMAK  650
            L+ A+GE LDNGAWA+R+Y KPFV W+WAG+++MA+GG++ ++D RYR  K
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

308) N646_1321 in NC_022349


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  515 bits (1941),  Expect = 5e-147, Method: Compositional matrix adjust.
 Identities = 374/591 (64%), Positives = 475/591 (81%), Gaps = 8/591 (1%)

Query  56   ILCWGFYTNDFTLQYVASNSNSQLPWYYRLTAVWGAHEGSLLLWVLIQAAWTVAVATFSR  115
            +L  +F  NDFT+ YVA+NSN+QLP  YR++A WGAHEGSLLLWVL+ ++WT+AVA FSR
Sbjct  56   VLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR  115

Query  116  GMPQESVARVLAVMGMISVGFLLFIILTSNPFLRTLPFFPVDGRDLNPLLQDPGLIVHPP  175
             +P + VARVLAVMGM+  GFL FI++TS PF RTLP FPV+GRDLNPLLQDPGLI HPP
Sbjct  116  QVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPP  175

Query  176  MLYMGYVGFSVAFSFAIASLMTGRLDTAWARWSRPWTTAAWVFLTLGIALGSWWAYYELG  235
            +LYMGYVGFSVAF+FAIA+L++GRLD+A +R +RPWT AAWVFLTLGI LGS WAYYELG
Sbjct  176  LLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELG  235

Query  236  WGGWWFWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVllaisafslsllGTFLVR  295
            WGGWWFWDPVENASFMPWLAGTAL+HS+AVTE+R+ FKAWT+LL+I AFSL LLGTFLVR
Sbjct  236  WGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVR  295

Query  296  SGILVSVHAFASDPSRGMFILGFLVFVIGGSLLLFAVKGAAVRVRGNFDLVSREnallan  355
            SG+LVSVHAFASDP+RGMFIL+F+V+V GGSLLLFAV+G  VR R N  L SRE+ LL+N
Sbjct  296  SGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGN  355

Query  356  nvlliaalvvvlvgtllplvHKQLGLGSVSIGAPFFDMLFAWLMMPFAFLLGIGPLIRWK  415
            NVLL+AA++VVL+GTLLPLVHKQLGLGS+S+G PFF+ +F+WLM+PFA+LLG+GPL+RW 
Sbjct  356  NVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWG  415

Query  416  RDSLSKLVKPMLVSGVLAFALAALCVYLFADFFSTMAYIGWVMAIWIIAMHGFELYERAT  475
            RD   ++ K +  + V ++ L+ L   L+ D + +M+ +G  MA WI  +   E  +R +
Sbjct  416  RDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS  475

Query  476  HRHSFSEGVRKLQRSHWAMMLGHVGLAVSVIGIAMVQNYSIERDVRLAPGEHFQIQGYDF  535
            +         K   S W+M+ +H+GLAV++ GIA  QNYS+ERDVR+ +G+   I++Y F
Sbjct  476  R-------GTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRF  528

Query  536  YFSGLRDKDGPNYDGYIADFEITHDGKYVNTLHAEKRFYRTAKSMMTEAAIDRGISRDLY  595
             F  +RD  GPNY G +A + +T++G     LHAEKR+Y T++ +MTEAAID G++RDLY
Sbjct  529  TFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLY  588

Query  596  IAMGERLDDNRSWAVRIYYKPFVRWIWAGSLIMALGGALAISDKRYRFRKS  646
             A+GE LD+  +WAVR+YYKPFVRWIWAG+L+MALGG L ++D RYR RK+
Sbjct  589  AALGEELDNG-AWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKP  638

309) VEA_002846 in NC_013456


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  514 bits (1938),  Expect = 1e-146, Method: Compositional matrix adjust.
 Identities = 373/591 (64%), Positives = 475/591 (81%), Gaps = 8/591 (1%)

Query  56   ILCWGFYTNDFTLQYVASNSNSQLPWYYRLTAVWGAHEGSLLLWVLIQAAWTVAVATFSR  115
            +L  +F  NDFT+ YVA+NSN+QLP  YR++A WGAHEGSLLLWVL+ ++WT+AVA FSR
Sbjct  56   VLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR  115

Query  116  GMPQESVARVLAVMGMISVGFLLFIILTSNPFLRTLPFFPVDGRDLNPLLQDPGLIVHPP  175
             +P + VARVLAVMGM+  GFL FI++TS PF RTLP FPV+GRDLNPLLQDPGLI HPP
Sbjct  116  QVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPP  175

Query  176  MLYMGYVGFSVAFSFAIASLMTGRLDTAWARWSRPWTTAAWVFLTLGIALGSWWAYYELG  235
            +LYMGYVGFSVAF+FAIA+L++GRLD+A +R +RPWT AAWVFLTLGI LGS WAYYELG
Sbjct  176  LLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELG  235

Query  236  WGGWWFWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVllaisafslsllGTFLVR  295
            WGGWWFWDPVENASFMPWLAGTAL+HS+AVTE+R+ FKAWT+LL+I AFSL LLGTFLVR
Sbjct  236  WGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVR  295

Query  296  SGILVSVHAFASDPSRGMFILGFLVFVIGGSLLLFAVKGAAVRVRGNFDLVSREnallan  355
            SG+LVSVHAFASDP+RGMFIL+F+V+V GGSLLLFAV+G  VR R N  L SRE+ LL+N
Sbjct  296  SGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGN  355

Query  356  nvlliaalvvvlvgtllplvHKQLGLGSVSIGAPFFDMLFAWLMMPFAFLLGIGPLIRWK  415
            NVLL+AA++VVL+GTLLPLVHKQLGLGS+S+G PFF+ +F+WLM+PFA+LLG+GPL+RW 
Sbjct  356  NVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWG  415

Query  416  RDNLSKLVKPMLVSGVLAFALAAVCVYLFADFFSTMAYIGWVMAIWIIAMHGFELYERAT  475
            RD   ++ K +  + V ++ L+ +   L+ D + +M+ +G  MA WI  +   E  +R +
Sbjct  416  RDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS  475

Query  476  HRHSFSEGVRKLQRSHWAMMLGHVGLAVSVIGIAMVQNYSIERDVRLAPGEHFQIQGYDF  535
            +         K   S W+M+ +H+GLAV++ GIA  QNYS+ERDVR+ +G+   I++Y F
Sbjct  476  R-------GTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRF  528

Query  536  YFSGLRDKDGPNYDGYIADFEITHDGKYVNTLHAEKRFYRTAKSMMTEAAIDRGISRDLY  595
             F  +RD  GPNY G +A + +T++G     LHAEKR+Y T++ +MTEAAID G++RDLY
Sbjct  529  TFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLY  588

Query  596  IAMGERLDDNRSWAVRIYYKPFVRWIWAGSLIMALGGALAISDKRYRFRKS  646
             A+GE LD+  +WAVR+YYKPFVRWIWAG+L+MALGG L ++D RYR RK+
Sbjct  589  AALGEELDNG-AWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKP  638

310) MASE_04260 in NC_018632


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  514 bits (1940),  Expect = 6e-147, Method: Compositional matrix adjust.
 Identities = 367/651 (57%), Positives = 502/651 (78%), Gaps = 15/651 (2%)

Query  1    MVPEIGNialtlalvlsillavYPLWGAHRQHEALMATAKPLAIGLFTFTLIAYVCLTYA  60
            M+PE G+  L LAL +++LL+VYPLWG  R +  +MA+A  +A  LF     A+  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVTDDFSVAYVAQHSNSRLPIYYKITAVWGGHEGSFLLWVLMLSIWTVAVAIFSKGIPLA  120
            FV +DF+VAYVA +SN++LP+ Y+++A WG+HEGS+LLWVL++S WT+AVA+FS+ +P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MVARVLSVLGMVGIGFYLFMLLTSNPFNSMLPFFPVDGRDLNPLLQDFGMIIHPPMLYMG  180
            +VARVL+V+GMV  GF  F+L+TS PF   LP FPV+GRDLNPLLQD G+I+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAISALISGQLDSTWARWSRPWVISAWAFLTVGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAI+AL+SG+LDS+ +R +RPW ++AW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEKRKAFKSWTVllaiaafslsllGTFLVRSGVIV  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R +FK+WT+LL+I AFSL LLGTFLVRSGV+V
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPTRGLFILGILIVLSGFGLLLYAMRAASLKSPGRYQAFSREVLLMGNNVFlc  360
            SVH+FASDP+RG+FIL+++++++G +LLL+A+R+  ++S       SRE LL+GNNV+L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aatlvvllgtllplvHKELGLGSISVGAPFFNQMFTLLIVPFVLMLGLGPLTRWKQQKAS  420
            AA LVVLLGTLLPLVHK+LGLGSISVG PFFN MFT L+VPF L+LG+GPL RW ++++ 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  ELQKQLLIAGGIALCAGVLVNFAYDEPTY-MGVLGMILVFWILVTTVQEVMQRLSAMPSG  479
            +++K L  A   +L  +VL+    ++    M  +GM +  WI V +V E +QR+S     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  480  NSDNASVLVKLRKLTPSHWGMVLGHVGFAICIIGITLVSNYEMERDVRMDIGDTVSLGGY  539
                     +  K + S WGMV +H+G+A+ I GI++  NY +ERDVRM  GD+V++ +Y
Sbjct  476  ---------RGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  540  DFSFRDVVKVQGPNFEADKGVFDVYQDGELIAHLEPEKRLYIVQRMPMTEAAIHSNPIRD  599
             F+FR+V  + GPN+ ++ ++++V ++GE  A L++EKRLY   RM MTEAAI++   RD
Sbjct  527  RFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  600  LFIAMGEPLDNGAWAIRIYIKPFVIWLWAGAVVMAIGGIFSISDKRYRMAK  650
            L+ A+GE LDNGAWA+R+Y KPFV W+WAG+++MA+GG++ ++D RYR  K
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

311) ccmF in NC_002940


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  513 bits (1937),  Expect = 1e-146, Method: Compositional matrix adjust.
 Identities = 374/622 (61%), Positives = 502/622 (81%), Gaps = 9/622 (1%)

Query  1    MIAELGNYSLALALGLSIFLAILPLVGAERQQTTLIGLARPLTWAMflalslsffalfyl  60
            M++E G+  L LALG++++L++ PL G  R ++ +++ A  ++W +F+ ++ +FF L   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   faVNDFSVQYVVNNSNSMLPLQYRLSAVWGSHEGSMllwvwllslwsvavaalTRQMPED  120
            F VNDF+V YV  NSN+ LP+ YR++A WG+HEGS+LLWV L+S W++AVA ++RQ+P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  AVARVLSVMglisigflifiifssNPFNRTFPNFPADGRELNPMLQDIGLIFHPPLLYMG  180
             VARVL+VMG++  GFL FI+F+S PF RT+P FP +GR+LNP+LQD GLIFHPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIASLMTGRLDTAWARWSRPWTIAAWVFLTLGIVLGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIA+L++GRLD+A +R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLMPWLAGTALMHSLAVTEKRSAFKAWTVllailafslcllGTFLVRSGILV  300
            FWDPVENAS+MPWLAGTAL+HS+AVTE+R++FKAWT+LL+I AFSLCLLGTFLVRSG+LV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPTRGLYILAYLVLVIGGSLLLYAFQGSKIRSLDNYERYSRESMLLINNIVLM  360
            SVHAFASDP+RG++ILA++VLV GGSLLL+A +G ++RS  N    SRES+LL NN++LM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  AFLSVVFLGTILPLIHKQIGLGTISIGAPFFDQMFLILMVPFAFILGIGPLVKWRRDQVS  420
            A + VV+LGT+LPL+HKQ+GLG+IS+G PFF+ MF  LMVPFA++LG+GPLV+W RD+  
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  AIRLPVIISFVLMLILGVVLPYWFIDRITITLI-LGVMMAVIIVLLSLYELYQRATHRHS  479
             IR  +  + V  L+L+V+LP W+++   I++  +G+ MA  I +L++ E  QR ++   
Sbjct  421  NIRKLLWAAVVTTLVLSVLLP-WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT-  478

Query  480  FLVGIFKLSRSHWGMVLAHLGVAMLVFGITFSQNFSIEKNVRMKVGDTVQIKDYDFTFKG  539
                  K S S WGMV AHLG+A+ + GI+FSQN+S+E++VRM+ GD+V I DY FTF+ 
Sbjct  479  ------KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  540  IKITDGANYQGGTAEIEVHHNGKFEATLNAEKRFYNVSKMGMTEAAIDWGFSRDLYAALG  599
            ++   G+NY+GG A I V ++G  EA L+AEKR+YN S+M MTEAAID G++RDLYAALG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  600  EKLEDNSWGVRLYYKPFIRWIW  621
            E L++ +W+VRLYYKPF+RWIW
Sbjct  593  EELDNGAWAVRLYYKPFVRWIW  614

312) C427_1613 in NC_020514


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  511 bits (1927),  Expect = 7e-146, Method: Compositional matrix adjust.
 Identities = 366/649 (57%), Positives = 506/649 (78%), Gaps = 13/649 (2%)

Query  1    MLAELGNFALVLALMMGILLSIYPMWGAYKDHSQMMAMAKPLAIGMFIFTAFAYGCLTHG  60
            M++E G+  L LAL +++LLS+YP+WG  +++++MMA A  +A  +FI  A A+  L H+
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FITDDFSIAYVANTSNSTLPIYYKITAVWGGHEGSFLLWVLIFSIWTVAVALFSKAIPMK  120
            F+ +DF++AYVA  SN+ LP+ Y+++A WG+HEGS+LLWVL+ S WT+AVA+FS+ +P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MVARVLSILGMVGIGFYLFMLLTSNPFDRLLPFFPIDGKDLNPLLQDFGMIIHPPMLYMG  180
            +VARVL+++GMV  GF  F+L+TS PF R LP FP++G+DLNPLLQD G+I+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVafafalaalISGQLDSTWARWSRPWTLAAWSFLTVGVALGSWWAYYELGWGGWW  240
            YVGFSVAFAFA+AAL+SG+LDS+ +R +RPWTLAAW FLT+G+ LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALIHSLAVTEKRKVFKSWTVllaisafslsllGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R  FK+WT+LL+I AFSL LLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPSRglfilgllviiiggslalYAYRAPQLKGNGRYQLFSREVLLIGNNVFlt  360
            SVH+FASDP+RG+FIL+++V++ GGSL L+A R+ ++++     L SRE LL+GNNV+L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aatlvvllgtllplvHKEIGMGSISIGAPFFNQMFTYLIVPFVLFMGIGPLSRWKSQSPQ  420
            AA LVVLLGTLLPLVHK++G+GSIS+G PFFN MFT L+VPF L++G+GPL RW  + P+
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  ALYKQLLIAFGLSVSAGILVNASFEQSSY-MAALGLVMSFWIIITTIMEIRQRIQPQVES  479
             + K L  A   ++  ++L+   +E+    M+A+G+ M+ WI + ++ E  QR+      
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG---  477

Query  480  GKFTISQSLKKLTRSHWGMVSGHLGFAVTLIGIALVSAYSVERNVRMGSGDRVTLQGYEF  539
                      K + S WGMV++HLG+AVT+ GIA+   YSVER+VRM +GD VT+++Y F
Sbjct  478  ---------TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRF  528

Query  540  VFKGVSEFTGPNYTADVGHLDVFQNGQKISSLAAEKRFYPVQRNVMTEAGIDSGLTRDLF  599
             F+ V ++TGPNY ++V+ ++V ++G+  + L AEKR+Y   R VMTEA+ID+GLTRDL+
Sbjct  529  TFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLY  588

Query  600  VALGEQLKNGDWSLRIYVKPFINWIWLGAFIMAFGGVLSISDKRYRMTK  648
             ALGE+L NG W++R+Y KPF+ WIW G+++MA+GG+L ++D RYR  K
Sbjct  589  AALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

313) Slit_1793 in NC_013959


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  490 bits (1848),  Expect = 1e-139, Method: Compositional matrix adjust.
 Identities = 356/651 (55%), Positives = 496/651 (77%), Gaps = 12/651 (1%)

Query  1    MIPEIGNFALIVALFLAMIQGVLPIIGAARNNPVMMSTARPLAVGQFFIVLIAIVCLVHS  60
            M+PE G+  L +AL +A++ +V P+ G AR ++ MM++A  +A   F+ V  A+  LVH+
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVGNDFSVLYVAEHSNSQLPIQYRVAALWGGHEGSLLLWTFILTVWTVAVATFSRHLPQE  120
            FV NDF+V YVA +SN+QLP+ YRVAA WG+HEGSLLLW ++++ WT+AVA FSR++P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MLARVIGVMGLISTGFLLFMLLTSNPFDRLLPA-AMDGRDLNPLLQDPGLVIHPPMLYMG  179
            ++ARV++VMG++ +GFL F+L+TS PF R LPA +++GRDLNPLLQDPGL++HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YvgfsvafafalsallggKLDSTWARWSRPWTTVAWVFLTIGIMLGSAWAYYELGWGGWW  239
            YVGFSVAFAFA++ALL+G+LDS+ +R +RPWT  AWVFLT+GI+LGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASFMPWLAGTALIHSLAVTEKRAAFKSWTVllaiaafslsllGTFLVRSGVLT  299
            FWDPVENASFMPWLAGTAL+HS+AVTE+RA+FK+WT+LL+I AFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFATDPKRGVFILTFLVVVIGSSLLLFAWRAPKIGLGGKFDLVSRESMLLANNVLLS  359
            SVHAFA+DP RG+FIL+F+V+V G+SLLLFA R+ ++    +  L SRES+LL+NNVLL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  VASASVFLGTLYPLFMDALGFGKLSVGPPYFNTVFVPLMAPLVMMMGLGPIARWKHASVP  419
             A   V+LGTL PL    LG+G +SVG P+FNT+F  LM P+ +++G+GP+ RW +    
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  DIWQRVRW-AFGASMVIALLLP-LVMGQWTPLIALGLLLAAWVITTTLLDLRKRIAGSGD  477
            +I +++ W A  +++V+++LLP L+ ++  ++ A+G+ +A W+   ++ +  +R++    
Sbjct  421  NI-RKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS----  475

Query  478  LLDRLKIPSRSYYGMLLAHLGIAVFIIGVTMVKGYETERDVRMDVGDTVEAGGYEFRFDG  537
               R    S SY GM+ AHLG+AV I G++  + Y  ERDVRM  GD+V   +Y F F  
Sbjct  476  ---RGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  538  VIDVPGPNYVASQGQVSVIKNGKLVTALHPEKRQYNVSGMPMTEASIQPGLLRDLYVSLG  597
            V D+ GPNY ++ + ++V ++G   + LH+EKR YN S M MTEA+I+ GL RDLY +LG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  598  EPIPGTKAWAVRVYIKPFVDWIWFGCLMMAFGGILAISDRRYRIHARKAQA  648
            E + +  AWAVR+Y KPFV WIW G L+MA+GG+L ++D RYR +   ++A
Sbjct  593  EEL-DNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEA  642

314) SCD_n02735 in NC_022357


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  487 bits (1838),  Expect = 7e-139, Method: Compositional matrix adjust.
 Identities = 356/639 (56%), Positives = 482/639 (76%), Gaps = 7/639 (1%)

Query  1    MIPELGHFalilalllalVQSILPLVGAARNNPVWMSVAKPAARAQFLFVAIAFGALAYS  60
            M+PE GH  L LAL +AL+ S+ PL G AR ++  M+ A   A+  F+ VA AF  L  +
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FLTLDFSVVNVTRNSHSRLPEIYRFTATWGSHEGSMLLWTFILGLWTMAVTLFSRHLPED  120
            F+  DF+V  V+ NS+++LP  YR +ATWG+HEGS+LLW ++++ WT+AV++FSR++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MMARVIGVMGLVSFGFLLFMLATSNPFLRM--EMAMDGSDLNPLLQDPGMVVHPPILYMG  178
            ++ARV++VMG+V  GFL F+L TS PF R     +++G DLNPLLQDPG++ HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  179  YVGFSVAFAFAIAALLSGKLDASWARWSRPWTTAAWSFLTVGIMMGSWWAYYELGWGGWW  238
            YVGFSVAFAFAIAALLSG+LD++ +R +RPWT AAW FLT+GI++GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  239  FWDPVENASLMPWLVGTALIHSLAVTEKRGSFKAWTVFLAIGAFSLSLLGTFLVRSGVLS  298
            FWDPVENAS+MPWL GTAL+HS+AVTE+R++FKAWT++L+I AFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  299  SVHSFATDPTRGLFILMFLLVVIGGSLLLFALRASQVGLGGRFALVSRESFLMVNNIlll  358
            SVH+FA+DP+RG+FIL F+++V GGSLLLFA+R+ +V      AL SRES+L+ NN+LL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  359  tatgavllgtlYPLFLDALGLGKISVGPPYFNSVFVPLVTPLIFLSGIGPLARWKQVNVP  418
            +A   VLLGTL PL    LGLG ISVG P+FN++F  L+ P+ +L G+GPL RW + + P
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR-DRP  419

Query  419  ELAARLKWGFGASVLV-AVLLPFTLGEWK--PMVSLGYLLSLWIVVTVAIGVRGRMRTSA  475
                +L W+   + LV +VLLP  L + K  +M ++G  ++ WI V        R+  ++
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLED-KIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT  478

Query  476  GWSANFYGMNLAHLGVAVTVIGVTMVSNYQSERNVRMEVGDTITVQDYTFRFDGVKDMVG  535
              S ++ GM  AHLG+AVT+ G++   NY  ER+VRM  GD++T++DY F F  V+D+ G
Sbjct  479  KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITG  538

Query  536  PNYKGSRGTLEVSRNGKPVSTLHPEKRIYTASGMPFTESAIDYGLTRDLYTALGESLDGG  595
            PNY+G+ + + V+R+G P + LH+EKR+Y +S M  TE+AID GLTRDLY+ALGE LD G
Sbjct  539  PNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG  598

Query  596  AWSVRLFHKPFVVWIWIgavlmalggllaITDRRYRTSR  634
            AW+VRL+ KPFV WIW G++LMALGGLL ++D RYR  +
Sbjct  599  AWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

315) Glaag_1105 in NC_015497


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  486 bits (1834),  Expect = 1e-138, Method: Compositional matrix adjust.
 Identities = 367/653 (57%), Positives = 497/653 (77%), Gaps = 23/653 (3%)

Query  1    MVAELGNISLVLALLMAISLAIYPLWGAQKDHLKLMQMAKPLAIGMFAFTLF-----AYI  55
            M++E G+  L LAL +A+ L++YPLWG  +++ ++M      + G+FA  LF     A++
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMA-----SAGVFAWLLFICVAGAFF  55

Query  56   CLTWAFVHDDFSLAYVASTSNSTLPLVYKYTAVWGGHEGSFLLWVMIFSIWTVAVALFSK  115
             L  AFV +DF++AYVA+ SN+ LP+ Y+ +A WG+HEGS+LLWV++ S WT+AVA+FS+
Sbjct  56   VLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR  115

Query  116  AIELKMVARVLSILGMVAIGFYLFMLLTSNPFDVLLPFYPVDGRDLNPLLQDFGMIIHPP  175
             +   +VARVL+++GMV  GF  F+L+TS PF   LP +PV+GRDLNPLLQD G+I+HPP
Sbjct  116  QVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPP  175

Query  176  MLYMGYVGFSVafafalaalISGQLDSTWARWSRPWTIAAWSFLTVGIALGSWWAYYELG  235
            +LYMGYVGFSVAFAFA+AAL+SG+LDS+ +R +RPWT+AAW FLT+GI LGS WAYYELG
Sbjct  176  LLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELG  235

Query  236  WGGWWFWDPVENASFMPWLVGTALMHSLAVTEKRKVFKSWTVllaiaafslsllGTFLVR  295
            WGGWWFWDPVENASFMPWL GTAL+HS+AVTE+R  FK+WT+LL+I AFSL LLGTFLVR
Sbjct  236  WGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVR  295

Query  296  SGILVSVHSFASDPSRGMFilgllvvviggslllFALRAPQLKGAGRYQLFSREVMLAGN  355
            SG+LVSVH+FASDP+RGMFIL+++V+V GGSLLLFA+R+ ++++     L SRE +L GN
Sbjct  296  SGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGN  355

Query  356  NVFLSAAClvvllgtllplvHKELGLGSISIGAPFFNQMFSYLIVPFVLLMGIGPLSRWK  415
            NV+L AA LVVLLGTLLPLVHK+LGLGSIS+G PFFN MF+ L+VPF LL+G+GPL RW 
Sbjct  356  NVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWG  415

Query  416  NQQPSALYKQlllafglslsaavlvTANFEQTSY-MAALGMVMGFWIVVTTIMEIHQRIN  474
             ++P  + K L  A   +L  +VL+   +E+    M+A+GM M+ WI V ++ E  QR++
Sbjct  416  RDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS  475

Query  475  ADKKLSQQPIFSALRKLTPSHWGMVVGHLGFAVSIMGITLVSNYNQEKHVRMAYGETVQL  534
             + K S             S WGMV +HLG+AV+I GI++  NY+ E++VRM  G++V +
Sbjct  476  RGTKTSL------------SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTI  523

Query  535  MGYDFTFNGVSNVKGPNYTGYQAHVVAKQDGEVVANLEAEKRIYTVQRNVMTEAGIDSNI  594
             +Y FTF  V ++ GPNY G  A +   ++GE  A L+AEKR+Y   R VMTEA+ID+ +
Sbjct  524  HDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGL  583

Query  595  HRDLFVALGEQLDDGDWALRIYVKPFVNWIWAGAFIMGFGGILSISDKRYRMQ  647
             RDL+ ALGE+LD+G WA+R+Y KPFV WIWAG+++M++GG+L ++D RYR +
Sbjct  584  TRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

316) ccmF in NC_004757


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  486 bits (1833),  Expect = 2e-138, Method: Compositional matrix adjust.
 Identities = 355/644 (56%), Positives = 473/644 (74%), Gaps = 13/644 (2%)

Query  1    MIPELGNFALILAMLLALVQGTLPIIGAARGIPSWIALARPVTQGHFVFIAIAFGCLAYS  60
            M+PE G+  L LA+ +AL+ +  P+ G ARG +  +A A   +   F+ +A AF  L  +
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVNNDFSVLNVASNSNSDLPVHFRFAATWGSHEGSLLLWVTMLAGWSVAVSVFSRQLPDD  120
            FV NDF+V  VA+NSN++LPV +R AATWG+HEGSLLLWV +++GW++AV+VFSRQ+P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MVARVLGVLGLVSAGFLLFLLFTSNPFDRLLPA-AIEGNDLNPLLQDPGMVMHPPMLYMG  179
            +VARVL+V+G+V AGFL F+LFTS PF R LPA ++EG DLNPLLQDPG++ HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVAFAFAIAALLNGQLDAAWARWSRPWTVVAWIFLTIGIMGGSWWAYYELGWGGWW  239
            YVGFSVAFAFAIAALL+G+LD+A +R +RPWT+ AW+FLT+GI+ GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASFMPWLVGTALIHSLAVTEKRGSFKSWTVLLAITAFSLSLLGTFLVRSGVLT  299
            FWDPVENASFMPWL GTAL+HS+AVTE+R++FK+WT+LL+I AFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFATDPARGIFILVYLSLVVGCSLTLFAWRASKVGLGGNFEIVSREttllannvlll  359
            SVHAFA+DPARG+FIL ++ LV G SL LFA R+ +V    N  + SRE+ LL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  vaagsvllgtlYPLLIDALDLGKISVGPPYFEAVFVPLMAPAIFLIGLGPIARWKKASLP  419
             A   VLLGTL PL+   L+LG ISVG P+F+++F  LM P  +L+G+GP+ RW +    
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  ALAVLMRWAFVVSLVAAGIMPFIMGEWK--PMVSFGLLLAFWVIASIFVSISHRLRNGGE  477
             +  L++ A V +LV + ++P ++ + K  +M + G+ +A W+         +R+  G  
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLED-KIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTK  479

Query  478  GGLFTRLAKQPRGYYGMHCAHLGIAVFIIGVTLVNGYETEKDVRMEVGSTVTLKEYTFQF  537
             +L         +Y GM  AHLG+AV I G+++ + Y  E+DVRM  G +VT+ +Y F F
Sbjct  480  TSL---------SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTF  530

Query  538  NGTKSVTGPNYNASQGQVEVFREGKKVSELQPEKRTYTASGMPMTEAAVDMGLLRDLYVA  597
               + +TGPNY ++ + + V R+G   + L++EKR Y +S M MTEAA+D GL RDLY A
Sbjct  531  REVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAA  590

Query  598  LGEPLENGAWIVRVYHKPFVNWIWlgcmlmalggalaaSDRRYR  641
            LGE L+NGAW VR+Y KPFV WIW G +LMALGG L  +D RYR
Sbjct  591  LGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

317) ccmF in NC_007481


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  486 bits (1832),  Expect = 2e-138, Method: Compositional matrix adjust.
 Identities = 338/647 (53%), Positives = 502/647 (78%), Gaps = 11/647 (1%)

Query  1    MIPELGYFSLTLAMVLSVLLCVFPLWGAHTGNLRLMRAAPSLAVGQFVFVFISFAALIYA  60
            M+PE G   L LA+ +++LL V+PLWG   G+ R+M +A  +A   F+ V  +F  L+ A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   SLTNDFTVAYVAYHSSSSLPWYYQITSTWGGHEGAILLWLLMQAGWTAVVALRSKALPWv  120
             + NDFTVAYVA +S++ LP  Y++++TWG+HEG++LLW+L+ +GWT  VA+ S+ +P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  lrarvlgvlgflgvgfMMYTLLLSSPFERLLPYFPVEGRDLNPLLQDPGMIIHPPLLYMG  180
            + ARVL+V+G +  GF+ + L+ S+PF R LP FPVEGRDLNPLLQDPG+I+HPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGLSVAFAFAIAALLTGKLDNTWAKWSRPWTMTAWGFLTLGITIGSWWAYSELGWGGWW  240
            YVG+SVAFAFAIAALL+G+LD++ ++ +RPWT++AW FLTLGI +GS WAY ELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLMPWLVATALLHSLSVTEKRGVFKSWTVllaiaafslsllGTFIVRSGIIV  300
            FWDPVENAS+MPWL +TALLHS++VTE+R+ FK+WT+LL+I AFSL LLGTF+VRSG++V
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFATDPDRGLFILAFLAIVVGGALALYGMRVSQVRSEGRYKLVSREVALWLNNIFLV  360
            SVHAFA+DP RG+FILAF+ +V GG+L L+++R  +VRS     L SRE  L  NN++L+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  VATLIVLLGTLLPMVHKEMGLGSISIGEPFFNKMFAILLVPFAILMGIGPFLRWKQNKWA  420
             A L+VLLGTLLP+VHK++GLGSIS+GEPFFN MF+ L+VPFA+L+G+GP++RW +++  
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  FLQNKILMGVLVSIIIT--FAWLFSSYDVIapltllattlaVWIVITTGIDLYSKVTVHS  478
             +++ +  +V+ +++++  ++WL+   D I ++T ++ ++A WI + +  +   +V+  +
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLE--DKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT  478

Query  479  TFKEGFKRLGLGYWAMVLGHIGIAFVIAGVTLTSAYSVERDVSMKPGDTVQLNQYQYRFE  538
                   + +L+YW+MV +H+G+A  I+G++++  YSVERDV M++GD+V +++Y++ F 
Sbjct  479  -------KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFR  531

Query  539  GVKNVRGANYSGHAGVVSVLKNDKLVTQLHAEKRRYDIGMQFMTEAAIDAGFTRDLYLAL  598
             V+++ G+NY G  ++++V +++   + LHAEKR Y+ +   MTEAAID+G+TRDLY AL
Sbjct  532  EVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAAL  591

Query  599  GEQLSEGAWSLRIYHKPFVRWMWIGGILISLAGFVILFDKRYRTSSP  645
            GE+L +GAW++R+Y KPFVRW+W GG+L++L+G++ L D RYR   P
Sbjct  592  GEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKP  638

318) B565_1132 in NC_015424


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  485 bits (1829),  Expect = 4e-138, Method: Compositional matrix adjust.
 Identities = 373/580 (65%), Positives = 486/580 (84%), Gaps = 7/580 (1%)

Query  62   IDNDFTVQYVATNSNSLLPLAYRISAVWGAHEGSlllwvltlggwtAAVAMFSRRLPLDA  121
            + NDFTV YVA NSN+ LP+ YR++A WGAHEGSLLLWVL ++GWT AVA+FSR++P D 
Sbjct  62   VVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADI  121

Query  122  VARVLGVLGLISVGFTAFVLFTSDPFTRTLPYFPVDGRDLNPLLQDPGLIFHPPMLYMGY  181
            VARVL+V+G++  GF AF+LFTS+PF+RTLP FPV+GRDLNPLLQDPGLIFHPP+LYMGY
Sbjct  122  VARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGY  181

Query  182  VGFSVAFAFAIASLMTGRLDATWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWWF  241
            VGFSVAFAFAIA+L++GRLD++ +R +RPWT+AAWVFLTLGIVLGS WAYYELGWGGWWF
Sbjct  182  VGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWF  241

Query  242  WDPVENASFMPWLAGTALLHSLAVSEKRATFKAWTVllalsafslsllGTFLVRSGVLVS  301
            WDPVENASFMPWLAGTALLHS+AV+E+RA FKAWT+LL++ AFSL LLGTFLVRSGVLVS
Sbjct  242  WDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVS  301

Query  302  VHAFASDPTRGLFILGFLLAVIGSSLLLFAFKGSQVKSHGKHELWSRETLLLCNNIMlva  361
            VHAFASDP+RG+FIL+F++ V G+SLLLFA +G +V+S+ ++ LWSRE+LLL NN++L+A
Sbjct  302  VHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMA  361

Query  362  glltvllgtllplvHKELGLGSISIGTPFFNHIYSWliipfalllgggplfRWRRQELGE  421
            ++L VLLGTLLPLVHK+LGLGSIS+G PFFN +++WL++PFALLLG GPL RW R+   +
Sbjct  362  AMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRN  421

Query  422  lkskvvvalvlslaaalllPQLFAETFKPWAAVGIGLGAWIIVTSVQETWARATHKHSFA  481
            ++  +  A+V +L  ++LLP L+ + + + +AVG++++ WI V +V E+  R ++     
Sbjct  422  IRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG----  477

Query  482  VGVRKLGNSHWAMILGHVGLAVSIIGIACTQNYSIEKDLRMQAGDRVHFADYEFVFAGIK  541
                K + S W+M+ +H+GLAV+I GIA +QNYS+E+D+RM+AGD V + DY F F  ++
Sbjct  478  ---TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  542  EKNGPNYDGFKGVLEVHKNGKQVALLKPEKRMYKVSRMPMTEAAIDAGITRDLYAALGEQ  601
            +  GPNY G  +++ V ++G   A+L +EKR+Y+ SRM MTEAAID+G+TRDLYAALGE+
Sbjct  535  DITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  602  LDNGAWAVRIYYKPFVRWIWFGGVFMAIGGVLAMLDKRYR  641
            LDNGAWAVR+YYKPFVRWIW GG++MA+GG+L + D RYR
Sbjct  595  LDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

319) M301_0446 in NC_014207


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  483 bits (1822),  Expect = 1e-137, Method: Compositional matrix adjust.
 Identities = 354/652 (55%), Positives = 478/652 (74%), Gaps = 12/652 (1%)

Query  1    MIPEIGHFslilallvaltlgslPIIGAARGNMVWMGLARPLARAQFLLIAFAFICLAYA  60
            M+PE GH  L LAL VAL L+  P+ G ARG+   M+ A  +A+  F+ +A AF+ L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FASKDYSVMYVASNSNSKLPIQFRIAAVWGGHEGSLLLWALILSVWTVAVSAFSKHLPDD  120
            F  +D++V YVA+NSN++LP+ +R+AA WG+HEGSLLLW L++S WT+AV+ FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MRARILGVMGLISVGFLLFMLMVSNPFERLIPA-ALDGRDLNPLLQDPGMIFHPPMLYMG  179
            + AR+L+VMG++  GFL F+L  S PF R +PA +++GRDLNPLLQDPG+IFHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVafafaiaaliggqlDAAWARWSRPWTTLAWVFLTLGILGGSNWAYYELGWGGWW  239
            YVGFSVAFAFAIAAL++G+LD+A +R +RPWT  AWVFLTLGI+ GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDAVENASFMPWLVGTALIHSLAVTEKRGSFKAWTVLLAICAFSLSLLGTFLVRSGVLT  299
            FWD+VENASFMPWL GTAL+HS+AVTE+R++FKAWT+LL+ICAFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFATDPRRGVFILAFLVIVIGGSLALFAWRAPTVGRGGKFSVVSRESFllannvlla  359
            SVHAFA+DP RG+FILAF+V+V GGSL LFA R+  V    + ++ SRES+LL+NNVLL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  vaaMSVLLGTLYPLFLDALNYGKISVGPPYFDAVFAPLMTPALFLMGVGPIVSWKNASLP  419
             A + VLLGTL PL    L  G ISVG P+F+++F+ LM P  +L+GVGP+V W     P
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR-P  419

Query  420  ELAMRLRWAFGV-SIATAIILP-LLLGNLTPMIGLGLFLAFWIIATTVNMVRHRLRGAGQ  477
                +L WA  V ++  +++LP LL +++ +M ++G+ +A WI   +V    +R      
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQR------  473

Query  478  SLVSRIQAIPRAWWGMVIAHLGIAVFTIGVTVVKGFESETAVRMLPGDVAHLAGFDFTFM  537
              VSR    + + WGMV AHLG+AV   G++  + +  E  VRM +GD   + ++ FTF 
Sbjct  474  --VSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFR  531

Query  538  GVDEVQGPNYTSNRGQIRVSKNGVERTVLKTEKRLYTVTNMPMTEAGISPAVVHDLYASL  597
             V ++ GPNY +  + I V+++G   +VL +EKRLY  + M MTEA+I  ++ +DLYA+L
Sbjct  532  EVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAAL  591

Query  598  GEPLSDGAWSVRIYHKPMVEWVWAGCALMAFGGLLALSDKRYRMKKRNKNSN  649
            GE L +GAW+VR+Y KP V W+WAG  LMA+GGLL L+D RYR +K   ++ 
Sbjct  592  GEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

320) ccmF in NC_016041


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  482 bits (1818),  Expect = 3e-137, Method: Compositional matrix adjust.
 Identities = 362/647 (56%), Positives = 497/647 (77%), Gaps = 11/647 (1%)

Query  1    MIPELGNialiialalsillaVYPLWGAQIHNQTMMRMGRPLSFGLFLFTAFAYGCLTYS  60
            M+PE G+  L +AL++++LL+VYPLWG    +  MM  +  ++  LF+  A A+  L  +
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FAVDDFSVQYVAQNSNSALPIYYKITAVWGGHEGSFLLWCLIFAVWTCAVAAFSKGIPQA  120
            F V+DF+V YVA NSN+ LP+ Y+++A WG+HEGS+LLW L+ + WT AVA FS+ +P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MIARVLSVLGMVSIGFYLFMLLTSNPFDSLLPFFPVDGRDLNPLLQDFGMIIHPPMLYMG  180
            ++ARVL+V+GMV  GF  F+L+TS PF   LP FPV+GRDLNPLLQD G+I+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVafafaiaaliggqlDSTWARWSRPWTIAAWSFLTVGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIAAL++G+LDS+ +R +RPWT+AAW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEKRKVFKSWTVllaiaafslsllGTFLVRSGVLV  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R  FK+WT+LL+I AFSL LLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPSRglfilgllvvviggslllYALRASQLKSVGRYEMFSREMMLMGNNvllv  360
            SVH+FASDP+RG+FIL+++V+V GGSLLL+A+R+ +++S     + SRE +L+GNNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aativvllgtllPLVHKEIGLGTISIGAPFFNEMFTLLIVPFVLFMAVGPLSRWKKQAPA  420
            AA +VVLLGTLLPLVHK++GLG+IS+G PFFN MFT L+VPF L+++VGPL RW ++ P 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  ALRNQLVFGMILALSAGLLINFTYDEPTY-MGMLGMVMSFWILIAIILEVRQRVVSNTRS  479
             +R+ L  +++ +L  ++L+    ++    M  +GM M+ WI +  + E  QRV   T++
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  480  EPVLASLRKLTPSHWGMVLGHVGFAVTLIGITLVSNYELERDVRMNAGDTVKIADYTVSF  539
                      + S WGMV +H+G+AVT+ GI++  NY +ERDVRM AGD+V I DY  +F
Sbjct  481  ----------SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTF  530

Query  540  TGVKQIEGPNYSADRGVFDVYKNGEFVNHLEPEKRFYPVQRTSMTEAGIHTTLTRDLFVA  599
              V++I GPNY ++ ++++V ++GE    L++EKR+Y   R  MTEA+I+  LTRDL+ A
Sbjct  531  REVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAA  590

Query  600  LGEPLSNDAWAIRLYYKPFVVWIWGGAIIMCIGGIFSISDKRYRIKK  646
            LGE L N+AWA+RLYYKPFV WIW+G+++M +GG++ ++D RYR +K
Sbjct  591  LGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

321) ccmF in NC_018268


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  481 bits (1814),  Expect = 6e-137, Method: Compositional matrix adjust.
 Identities = 323/605 (54%), Positives = 455/605 (76%), Gaps = 10/605 (1%)

Query  47   MFVFVALAFGILAYAFMTDDFSVAYVANNSNSLLPWYYKISAVWGGHEGSLLLWILMLAG  106
            +F+ VA AF +L  AF+ +DF+VAYVA NSN+ LP  Y+++A WG+HEGSLLLW+L+++G
Sbjct  46   LFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSG  105

Query  107  WTLAVAVFSQRLPSVMVSQVLSVLGFVCVGFLLFIVVTSNPFERMLPNIPADGADLNPLL  166
            WTLAVAVFS+++P+ +V++VL+V+G VC GFL FI+ TS PF R LP +P +G DLNPLL
Sbjct  106  WTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLL  165

Query  167  QDFGLIIHPPMLYMGYVGFSVAFAFAIAALINGRLDAAWARWSRPWTTVAWAFLTIGIAL  226
            QD GLI+HPP+LYMGYVGFSVAFAFAIAAL++GRLD+A +R +RPWT  AW FLT+GI L
Sbjct  166  QDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVL  225

Query  227  GSWWAYYELGWGGWWFWDPVENASLLPWLSGTALIHSLAVTEKRGVFKSWTVLLAIVTFA  286
            GS WAYYELGWGGWWFWDPVENAS++PWL+GTAL+HS+AVTE+R+ FK+WT+LL+I +F+
Sbjct  226  GSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFS  285

Query  287  LSLLGTFLVRSGVLTSVHAFASDPERGTFLLVLLAITVIGSLILYAVRAPTVHVRARYGS  346
            L LLGTFLVRSGVL SVHAFASDP RG F+L ++ +   GSL+L+AVR+  V+ R   + 
Sbjct  286  LCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNAL  345

Query  347  MSREIFLLLNNVMLVSATLLVAVGTLYPLVLDSLDMGKLSIGEPFFNLTFAPLAIAAGLL  406
             SRE +LL NNV+L++A L+V +GTL PLV   L++G +S+GEPFFN  F+ L ++ +LL
Sbjct  346  WSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALL  405

Query  407  MGVGVFSRWKKTDAGWLARKLLWPlalsilisaaai--VGYGEFKTMAFLGIFTAVWVAV  464
            +GVG + RW + D  +  RKLLW+  ++ L+ +  +  +  + + +M+ +G+  A W+AV
Sbjct  406  LGVGPLVRWGR-DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAV  464

Query  465  ATCWDLWDKSNSRKGRMHGLKRQSRSYYGMVLGHLGLAMIIAGATVVSNYGIERDVRMEL  524
             +       +  R +R     + S SY GMV +HLGLA+ I+G +   NY++ERDVRM  
Sbjct  465  LAV----AEAVQRVSRG---TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRA  517

Query  525  GDVATVGDYQFVFTDIGQRQGANFTAEYGGFDVLLDGRKVAELHPEKRQYSVGMSVMTEA  584
            GD  T+ DY+F F ++ +  G+N+ +  + ++V  +G   A LH+EKR Y+ +  VMTEA
Sbjct  518  GDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEA  577

Query  585  DIDAGFTRDIFVAIGERISDNAWAIRLQYKPLIRWLWLGAFITALGGFLAVSDKRYRIRE  644
             ID+G+TRD++ A+GE + + AWA+RL YKP++RW+W G+++ ALGG+L ++D RYR R 
Sbjct  578  AIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

Query  645  RAAEP  649
              +E+
Sbjct  638  PLPEA  642

322) Metme_2346 in NC_015572


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  480 bits (1809),  Expect = 2e-136, Method: Compositional matrix adjust.
 Identities = 352/642 (55%), Positives = 476/642 (75%), Gaps = 12/642 (1%)

Query  1    MIPEIGHFALILALCMAVVQGTLPLVGASKGIAGWVHVAKPAAFGQLLFMAIA--YGCLT  58
            M+PE GH  L LAL +A++ +  PL G ++G A    +A ++ F+ LLF+ +A  +  L 
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDAR--MMASAGVFAWLLFICVAGAFFVLV  58

Query  59   YSSIVHDFSVAYIAQNSNTGLPFIYLVSGVWGAHEGSLLLWALTLSIWTGLVAMFSKHIP  118
             + +V+DF+VAY+A NSNT LP  Y V++ WGAHEGSLLLW L +S WT  VA+FS+++P
Sbjct  59   HAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVP  118

Query  119  DATRARVLGVMGLVSVGFILFLLFTSNPFARLFPA-PAEGRDLNPLLQDPGLAIHPPMLY  177
                ARVL+VMG+V  GF+ F+LFTS PFAR +PA P EGRDLNPLLQDPGL +HPP+LY
Sbjct  119  ADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLY  178

Query  178  MGYVGFSVAFAFSIAALIEGKLDAAWARWSRPWTSIAWMFLTIGITLGSWWAYYELGWGG  237
            MGYVGFSVAFAF+IAAL+ G+LD+A +R +RPWT  AW+FLT+GI LGS WAYYELGWGG
Sbjct  179  MGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGG  238

Query  238  WWFWDPVENASFMPWLVGTALIHSLAATEKRGVFKTWTVllaifafslsllGTFLVRSGV  297
            WWFWDPVENASFMPWL GTAL+HS+A TE+R+ FK+WT+LL+I AFSL LLGTFLVRSGV
Sbjct  239  WWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGV  298

Query  298  LTSVHAFASDPARGVFILVFLAVVVGGSLLLYAIRAPQVKSSASFELVSRESvllinnvl  357
            L SVHAFASDPARG+FIL F+ +V GGSLLL+A+R+ +V+S  +  L SRES+LL NNVL
Sbjct  299  LVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVL  358

Query  358  lvvTAASILLGTLYPLVIDALGLGKLSVGPPYFNAVFIPLMAPLAIVVGFGMLLHWKRDE  417
            L+ +   +LLGTL PLV   LGLG +SVG P+FN++F  LM P+A+++G G L++W RD 
Sbjct  359  LMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR  418

Query  418  LKTLSKSVWLIAVVCIAVAGLLP-LLMPFYSWAAVLGLSLALWTLAVTGFAFKQRLQNWS  476
             + + K +W   V  + ++ LLP LL       + +G+++A W   ++     QR+    
Sbjct  419  PRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV----  474

Query  477  FERLKQIPAGFYGMTVAHVGIAVFVVGITMTSVYSIERDVRMAPGDTLDMFGYIFNFHGV  536
              R  + + ++ GM  AH+G+AV + GI+ +  YS+ERDVRM +GD++ + +Y F F+ V
Sbjct  475  -SRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  537  KQTEGPNYRAEQGYLTVTHDGETVAELSPQKRVYRVQTMPMTEAAIDAGLFRDLFVAIGE  596
            ++  GPNYR+  + + VT++GE  A L ++KR+Y    M MTEAAID+GL RDL+ A+GE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  597  PLGEEGAWSLRVYYKSFIRWIWMGGVFMAVGGLLGAMDRRYR  638
             L ++GAW++R+YYK+F+RWIW GG++MA+GGLL   D RYR
Sbjct  594  EL-DNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

323) Patl_3251 in NC_008228


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  479 bits (1807),  Expect = 2e-136, Method: Compositional matrix adjust.
 Identities = 364/649 (57%), Positives = 496/649 (77%), Gaps = 13/649 (2%)

Query  1    MVAELGNISLVLALLMAISLAIYPLWGAQKDHLKLMQMAKPLAIGMFAFTLVAYICLTWA  60
            M++E G+  L LAL +A+ L++YPLWG  +++ ++M  A  +A  +F     A++ L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVHDDFSLAYVASTSNSTLPLVYKYTAVWGGHEGSFLLWVMIFSIWTVAVALFSKAIELK  120
            FV +DF++AYVA+ SN+ LP+ Y+ +A WG+HEGS+LLWV++ S WT+AVA+FS+ +   
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MVARVLSILGMVAIGFYLFMLLTSNPFDVLLPFYPVDGRDLNPLLQDFGMIIHPPMLYMG  180
            +VARVL+++GMV  GF  F+L+TS PF   LP +PV+GRDLNPLLQD G+I+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVafafalaalISGQLDSTWARWSRPWTIAAWSFLTVGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFA+AAL+SG+LDS+ +R +RPWT+AAW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALMHSLAVTEKRKVFKSWTVllaiaafslsllGTFLVRSGILV  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R  FK+WT+LL+I AFSL LLGTFLVRSG+LV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHSFASDPSRglfilgllvvviggslllfAIRAPQLKGAGRYKLFSREVMLAGNNVFlt  360
            SVH+FASDP+RG+FIL+++V+V GGSLLLFA+R+ ++++     L SRE +L GNNV+L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aaclvvllgtllplvHKELGLGSISIGAPFFNQMFSYLIVPFVLLMGIGPLSRWKNQAPS  420
            AA LVVLLGTLLPLVHK+LGLGSIS+G PFFN MF+ L+VPF LL+G+GPL RW  + P 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  ALYKQlllafglslsaailVTANFEQTSY-MAALGMVMGFWIVVTTIMEIHQRINADKKL  479
             + K L  A   +L  ++L+   +E+    M+A+GM M+ WI V ++ E  QR++ + K 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  480  SQQPIFSALAKLTPSHWGMVVGHLGFAVSIIGITLVSNYNQEKHVRMAYGETVQLMGYDF  539
            S             S WGMV +HLG+AV+I GI++  NY+ E++VRM  G++V + +Y F
Sbjct  481  SL------------SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRF  528

Query  540  TFKGVSNVKGPNYTGYQAHVVAKQDGEVVASLEAEKRIYTVQRNVMTEAGIDSNIHRDLF  599
            TF+ V ++ GPNY G  A +   ++GE  A L+AEKR+Y   R VMTEA+ID+ + RDL+
Sbjct  529  TFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLY  588

Query  600  VALGEQLDDGDWALRIYVKPFVNWIWAGAFIMGFGGILSISDKRYRMQK  648
             ALGE+LD+G WA+R+Y KPFV WIWAG+++M++GG+L ++D RYR +K
Sbjct  589  AALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

324) Nmul_A1209 in NC_007614


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  476 bits (1793),  Expect = 3e-135, Method: Compositional matrix adjust.
 Identities = 338/599 (57%), Positives = 457/599 (77%), Gaps = 15/599 (2%)

Query  47   FVFVAIAFFCLAYsfvnsdfsvvnvaqnsnsnLPLQYRFAATWGSHEGSLLLWTFMLACW  106
            F+ VA AFF L  +FV +DF+V  VA NSN++LP+ YR AATWG+HEGSLLLW ++++ W
Sbjct  47   FICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGW  106

Query  107  SVAVSVFSKHLPNEMVARVLGVMGLVSVGFLIFMLFTSNPFERMLPG-AMEGSDLNPLLQ  165
            ++AV+VFS+++P ++VARVL+VMG+V  GFL F+LFTS PF R LP+ ++EG DLNPLLQ
Sbjct  107  TLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQ  166

Query  166  DPGMVCHPPMLYMGYVGFSVAFAFAISALLSGQMDATWARWSRPWTTVAWMFLTIGIMMG  225
            DPG++ HPP+LYMGYVGFSVAFAFAI+ALLSG++D++ +R +RPWT  AW+FLT+GI++G
Sbjct  167  DPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLG  226

Query  226  SWWAYYELGWGGWWFWDPVENASFMPWLVGTALVHSLAVTEKRGSFKSWTVLLAICAFSL  285
            S WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS+AVTE+R++FK+WT+LL+ICAFSL
Sbjct  227  SAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSL  286

Query  286  SLLGTFLVRSGVLTSVHAFATDPTRGIFILAFLVTITGGSLLLFAWRAPKIGLGGKFELV  345
             LLGTFLVRSGVL SVHAFA+DP+RG+FILAF+V +TGGSLLLFA R+ ++    +  L 
Sbjct  287  CLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALW  346

Query  346  SRESmllannllmmvaaGSILLGTLYPLFMDALELGKISVGPPYFEAVFVPLMTPAVFLI  405
            SRES+LL+NN+L+M A   +LLGTL PL    L LG ISVG P+F+++F  LM P  +L+
Sbjct  347  SRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLL  406

Query  406  GLGPLARWKQASLPELAVRLRWAFGVSA-VTALVMPFIMGEWKL--MVSFSLLMAFWVIT  462
            G+GPL RW +    ++  +L WA  V++ V ++++P ++ + K+  M + ++ MA W+  
Sbjct  407  GVGPLVRWGRDRPRNIR-KLLWAAVVTTLVLSVLLPWLLED-KIIAMTAVGMAMACWIAV  464

Query  463  SVIVSVIHRLRSTGKQGLLAKLAAQSRSYYGMHAAHLGIAFFIIGVALVGGYETEKDVRM  522
              +   ++R+    K +L         SY GM AAHLG+A  I G+A+   Y  E+DVRM
Sbjct  465  LAVAEAVQRVSRGTKTSL---------SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRM  515

Query  523  EIGDTVEVGGYTFRFNGVKKAPGPNYMSDIGNVDVLRDGKKINVLEPEKRTYNASGMPMT  582
              GD+V + +Y F F  V+   GPNY ++++ ++V R+G    VL++EKR YN+S M MT
Sbjct  516  RAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMT  575

Query  583  EAAIDAGILRDLYVALGEPLENGAWVVRVYHKPFVDWIWFGCMLMAFGGFLAITDRRYR  641
            EAAID+G+ RDLY ALGE L+NGAW VR+Y KPFV WIW G +LMA+GG+L ++D RYR
Sbjct  576  EAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

325) ccmF in NC_014366


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  471 bits (1775),  Expect = 7e-134, Method: Compositional matrix adjust.
 Identities = 369/653 (57%), Positives = 477/653 (74%), Gaps = 12/653 (1%)

Query  1    MNPEIGHfalvlafavalfQGVLPLWGVYRGHRGLMALGRSLSYGQFFFMALAIACLGAA  60
            M PE GH  L LA++VAL+ +V PLWGV RG+  +MA +  ++   F+ +A A+  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FLQNDFTVQYVARNSNTLLPFWYKISAIWGGHEGSLLLWGFVLSVWTAAVALFSRSIPEP  120
            F+ NDFTV YVA NSNT LP WY+++A WG+HEGSLLLW +++S WT AVA+FSR +P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MIARVLAIMGWIGVGFYSFMLFTSNPFLRNLPDFPAEGADLNPLLQDVGLILHPPMLYMG  180
            ++ARVLA+MG +  GF +F+LFTS PF R LP FP EG DLNPLLQD GLI+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAGLLSGRMDSAWARWSRPWTTVAWCFLTGGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIA+LLSGR+DSA +R +RPWT  AW FLT GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALIHSLAATEKRGVFKPWTVllailafslsllGTFLVRSGVLT  300
            FWDPVENASFMPWL GTAL+HS+A TE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGYYILVFLVAVIGGSLTLFAARANVFDTESRYETFSREMFLLINNILLM  360
            SVHAFASDPARG +IL F+V V GGSL LFA R++   +       SRE +LL NN+LLM
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  VAAGYVLLGTLAPIFADVLGLGKISIGEPFFNTVAGPLAAllmlltgvgpllNWKRHSVS  420
             A   VLLGTL P+    LGLG IS+GEPFFNT+   L   + LL GVGPL+ W R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  ALLRLLMVAFVGSAIAGVVLVWLLAQEMAPYVVLATAFCVYAAVLLVVDCGRKM-RTAKA  479
             + +LL  A V + + +V+L WLL + + +   ++ A     AVL V +  +++ R +K+
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  480  GLWAGWQRLPRSYRGMLVAHAGFIVSMLGITWVSAFDVEKDVRLAPGESVVVQDYRYAFD  539
            +L         SY+GM+ AH G+ V++ GI+    + VE+DVR+ +G+SV ++DYR++F 
Sbjct  481  SL---------SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFR  531

Query  540  EVRDIQGPNYVSTEGAFTVYKGDRVVARLTPEKRRYLAQGSVMTEAAIDGGLWRDLYVAL  599
            EVRDI GPNY +  + + V + +   A L +EKR Y +   VMTEAAIDGGL RDLY AL
Sbjct  532  EVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAAL  591

Query  600  GEPLGDGSWAVRIYYKPLMRWVWggglimalgglialSDRRYRVASRRALAGE  652
            GE L++G+WAVR+YYKP++RW+W+GGL+MALGGL+ L+D RYR   R++L+  
Sbjct  592  GEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR--RRKPLPEA  642

326) Neut_1638 in NC_008344


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  470 bits (1773),  Expect = 1e-133, Method: Compositional matrix adjust.
 Identities = 337/614 (55%), Positives = 450/614 (74%), Gaps = 20/614 (3%)

Query  47   FVFTTIAFGCLAYSFLNNDFSVLNVASHSNSDLPLHFRFAATWGSHEGSLLLWVTILAGW  106
            F+  + AF  L  +F+ NDF+V  VA++SN++LP+ +R AATWG+HEGSLLLWV +++GW
Sbjct  47   FICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGW  106

Query  107  SVAVSVFSRQLPDDMVARVLAVLGLVSAGFLLFLLFTSNPFDRLLPA-AIEGNDLNPLLQ  165
            ++AV+VFSRQ+P D+VARVLAV+G+V AGFL F+LFTS PF R LPA ++EG DLNPLLQ
Sbjct  107  TLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQ  166

Query  166  DPGMVMHPPMLYMGYVGFSVAFAFAIAALLSGQLDAAWARWSRPWTIVAWIFLTIGIMFG  225
            DPG++ HPP+LYMGYVGFSVAFAFAIAALLSG+LD+A +R +RPWT+ AW+FLT+GI++G
Sbjct  167  DPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLG  226

Query  226  SWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHSLAVTEKRGSFKSWTILLAITAFSL  285
            S WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS+AVTE+R++FK+WT+LL+I AFSL
Sbjct  227  SAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSL  286

Query  286  SLLGTFLVRSGVLTSVHAFATDPARGIFILIYLSLVVGCSLTLFAWRASKVGLGGNFEIV  345
             LLGTFLVRSGVL SVHAFA+DPARG+FIL ++ LV G SL LFA R+ +V    N  + 
Sbjct  287  CLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALW  346

Query  346  SREttllannvlllvaagsvvlgtlYPLLIDALNLGKISVGPPYFEAVFVPLMAPAIFLM  405
            SRE+ LL+NNVLL+ A   V+LGTL PL+   L LG ISVG P+F+++F  LM P  +L+
Sbjct  347  SRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLL  406

Query  406  GLGPVARWKKASLPALTVLLRWAFVVSVVAAGIMPFIMGEWK--PMVSFGLLLAFWVVTS  463
            G+GP+ RW +     +  LL+ A V ++V + ++P ++ + K  +M + G+ +A W+   
Sbjct  407  GVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLED-KIIAMTAVGMAMACWIAVL  465

Query  464  IFVGIRHRLQNSGEGGLITKLVKQPRSYYGMHCAHFGIAVFIIGVTLVNGYETEKDVRME  523
                  +R+  +   +L         SY GM  AH+G+AV I G+++ + Y  E+DVRM 
Sbjct  466  AVAEAVQRVSRGTKTSL---------SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMR  516

Query  524  VGSTVTLKDYTFQFNGTKSVPGPNYNASQGQIEVFREGKKISELFPEKRTYTASGMPMTE  583
             G +VT+ DY F F   + + GPNY ++ + I V R+G   + L +EKR Y +S M MTE
Sbjct  517  AGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTE  576

Query  584  ADVDMGFLRDLYVALGEPLENDAWIVRVYHKPFVNWIWFGCILMALGGALSVSDRRYRLA  643
            A +D G+ RDLY ALGE L+N+AW VR+Y KPFV WIW G +LMALGG L ++D RYR  
Sbjct  577  AAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR--  634

Query  644  INKKYRRKAAETPG  657
                 RRK+   +G
Sbjct  635  -----RRKPLPEAG  643

327) ccmF in NC_017075


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  469 bits (1768),  Expect = 2e-133, Method: Compositional matrix adjust.
 Identities = 335/589 (57%), Positives = 441/589 (75%), Gaps = 13/589 (2%)

Query  60   SFLRHDFSVAYVAENSNSTLPTMYVVAAVWGGHEGSLLLWVLMLAVWTVAVALFSRSLPL  119
            +F+ +DF+VAYVA NSN+ LP  Y VAA WG+HEGSLLLWVL+++ WT+AVA+FSR +P 
Sbjct  60   AFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPA  119

Query  120  AFVARILGVMGLVAAGFLLFMLLTSNPFDRLIPAVP-DGRDLNPLLQDPGMVFHPPMLYM  178
             +VAR+L+VMG+V AGFL F+L+TS PF R +PA P +GRDLNPLLQDPG++FHPP+LYM
Sbjct  120  DIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYM  179

Query  179  GYVgfsvafafaiaallggnlDAGWARWTRPWTTAAWIFLTFGIALGSWWAYNELGWGGW  238
            GYVGFSVAFAFAIAALL+G LD++ +R +RPWT AAW+FLT+GI LGS WAY ELGWGGW
Sbjct  180  GYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGW  239

Query  239  WFWDPVENASFMPWLVGTALIHSLAVTEKRGSFKVWTVWLAITAFSLSLLGTFLVRSGVL  298
            WFWDPVENASFMPWL GTAL+HS+AVTE+R++FK WT+ L+I AFSL LLGTFLVRSGVL
Sbjct  240  WFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVL  299

Query  299  SSVHAFATDPRRGLFILGFLVIVIGSSLALFAWRAPKVGLGQRFGLLSRESLLLVNNMVL  358
             SVHAFA+DP RG+FIL+F+V+V G+SL LFA R+ +V      +L SRESLLL NN++L
Sbjct  300  VSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLL  359

Query  359  TVATGAVLLGTLYPLFLDALGMGKISVGPPYFDTVFGLLMAPLVLVLGIGPLTRWKRDEa  418
              A   VLLGTL PL    LG+G ISVG P+F+T+F  LM P+ L+LG+GPL RW RD +
Sbjct  360  MAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRP  419

Query  419  gpllrrl-vlplvatvaaalatgwaagHISAVTTGGLAMAYWIVFATLVDLRQRLWPAGG  477
              + + L    + + V + L      + I A+T+ G+AMA WI   ++ +  QR+  + G
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV--SRG  477

Query  478  QAGQLLHRARLIPRAMAGMMLAHLGVAVFAFGVSMVKTYETERDVKMGPGDTTTVGGYTF  537
                L  +         GM+ AHLG+AV   G++  + Y  ERDV+M +GD+ T+ +Y F
Sbjct  478  TKTSLSYW---------GMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRF  528

Query  538  TMKEVREVQGPNFVAAEGVLDITRDGKPVGTLSPQKRIYRVQQMPMTEAAVDGNLWRDLY  597
            T +EVR++ GPN+ ++ +++++TR+G P + L ++KR+Y   +M MTEAA+DG L RDLY
Sbjct  529  TFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLY  588

Query  598  VSMGEQLEGGAWVVRVHYKPFVSWIWggcllmmaggllaaaDRRYRVRQ  646
             ++GE+L+ GAW VR+ YKPFV WIW+G LLM  GGLL  AD RYR R+
Sbjct  589  AALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

328) NAL212_1562 in NC_015222


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  468 bits (1763),  Expect = 6e-133, Method: Compositional matrix adjust.
 Identities = 339/601 (57%), Positives = 452/601 (76%), Gaps = 15/601 (2%)

Query  47   FVFVLIAFFCLAYSFVSSDFSVLNVANNSNTELPFHFRLAATWGSHEGSLLLWVLMLASW  106
            F+ V  AFF L  +FV +DF+V  VA NSNT+LP  +R+AATWG+HEGSLLLWVL++++W
Sbjct  47   FICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGW  106

Query  107  SVAVSVFSKQLPDDVVARvlgvlglvSIGFLVFMLFTSNPFDRLLPA-AVEGSDLNPLLQ  165
            ++AV+VFS+Q+P D+VARVL+V+G+V  GFL F+LFTS PF R LPA +VEG DLNPLLQ
Sbjct  107  TLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQ  166

Query  166  DFGMVVHPPMLYMGYVGFSVAFAFAIAALLSGKLDATWARWSRPWTIIAWVFLTIGIMLG  225
            D G++ HPP+LYMGYVGFSVAFAFAIAALLSG+LD++ +R +RPWT+ AWVFLT+GI+LG
Sbjct  167  DPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLG  226

Query  226  SWWAYYELGWGGWWFWDPVENASFMPWLVGTALVHSLAVTEKRGSFKSWTVLLAISTFAL  285
            S WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS+AVTE+R++FK+WT+LL+I +F+L
Sbjct  227  SAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSL  286

Query  286  SLLGTFLVRSGVLTSVHAFATDPARGVFILAFLVIVISCALLLFAWRAPKVGLGGRFDLL  345
             LLGTFLVRSGVL SVHAFA+DPARG+FILAF+V+V + +LLLFA R+ +V       L 
Sbjct  287  CLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALW  346

Query  346  SRESMllannilllvaaasvllGTLYPLIIDALGLGKLSVGPPFFEAVFVPIMTPAIFLI  405
            SRES+LL+NN+LL+ A   VLLGTL PL+   LGLG +SVG PFF+++F  +M P  +L+
Sbjct  347  SRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLL  406

Query  406  GIGPISRWKQMSLPALAVRLRWAFGI-SVVSALMTPFFMGEWK--PMVSFGLLLAFWIIV  462
            G+GP+ RW +   P    +L WA  + ++V +++ P ++ + K  +M + G+ +A WI V
Sbjct  407  GVGPLVRWGRDR-PRNIRKLLWAAVVTTLVLSVLLPWLLED-KIIAMTAVGMAMACWIAV  464

Query  463  CAFVNLKHRLNNSGKSSLFTKLTKQSRSYYGMHCAHIGVAVFIIGVTLVSSYETEKDVRM  522
             A  +  +R++ + K+SL         SY GM  AH+G+AV I G+++  +Y  E+DVRM
Sbjct  465  LAVAEAVQRVSRGTKTSL---------SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRM  515

Query  523  EIGSKVTVGGYVFQFNGTSDVVGPNYKAVKGDISVFKDDRFIRTLYPEKRTYNASGMAMT  582
              G  VT+ +Y F F    D+ GPNY++  + I+V +++     L +EKR YN+S M MT
Sbjct  516  RAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMT  575

Query  583  EAAIDTGFFRDLYVALGEPLSNGVWVVRAYHKPFVDWIWFGCILMAMGGITSITDRRYRL  642
            EAAID G+ RDLY ALGE L NG W VR Y KPFV WIW G +LMA+GG+  ++D RYR 
Sbjct  576  EAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRR  635

Query  643  K  643
            +
Sbjct  636  R  636

329) Pnuc_1513 in NC_009379


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  467 bits (1759),  Expect = 1e-132, Method: Compositional matrix adjust.
 Identities = 347/636 (55%), Positives = 481/636 (76%), Gaps = 3/636 (0%)

Query  1    MIPEFGHYALILALCISLIQGVLPLLGAHYGRREWLVlarpaaqalflllaiafgilaWS  60
            M+PE+GH  L LAL ++L+ +V PL G   G    +  A   A  LF+ +A AF +L  +
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FYVNDFSVLYVAEHSNSQLPVIYRLGAVWGGHEGSLLLWIFLLSTWTILVAQLSKALDEF  120
            F VNDF+V YVA +SN+QLPV YR++A WG+HEGSLLLW++L+S WT+ VA +S+ +   
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MVARVIgvlglvasglllfvlTTSNPFERLLPA-AQDGRSLNPLLQDPGLVFHPPMLYMG  179
            +VARV++V+G+V +G+L F+L TS PF R LPA + +GR LNPLLQDPGL+FHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVAFAFAIASLLSGRLDAAWARWSRPWTTAAWVFLTLGIALGSWWAYYELGWGGWW  239
            YVGFSVAFAFAIA+LLSGRLD+A +R +RPWT AAWVFLTLGI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASFIPWLVGTALLHSLAVTEKRGGFKSWTVLLAITAFSLSLLGTFLVRSGVLT  299
            FWDPVENASF+PWL GTALLHS+AVTE+R+GFK+WT+LL+I AFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFATDPRRGIFILIFLSLVVGSSLTLYAWRAPKSSLGGKFNLSSRETFILLGNVFLV  359
            SVHAFA+DP RG+FIL F+ LV G+SL L+A R+ +     +  L SRE+++L  NV+L+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  VSAGSVLLGTLYPLLIDALHLGKISVGPPYFNSVFVPIMVPLLVLMGIGPWTNWKNTNLI  419
             +   VLLGTL PL+   L LG ISVG P+FN++F  +MVP+ +L+G+GP   W      
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  LVIKRLWLAGLVAVIAGVLIP-LIMGQFTWLAGLGFLLAFWVIASGCMQIV-RQAKAGKP  477
             + K LW A + +++ +VL+P L+ +++  ++++G  +A W+   +  + V R +++ K 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  478  TRSFIGMQIAHLGIAIFVIGVTMVGAYQEEKDVRMLAGESVTVGGYQIQLQGVNPVAGPN  537
            + S+ GM  AHLG+A+ + G++    Y  E+DVRM AG+SVT+ +Y++ ++ V  ++GPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  538  YKAIRGSFLLSKDGVAQATLNPEKRSYFSSTMPMTEAAINAGLTRDIYVSLGEELDDKSW  597
            Y++  + + ++++G ++A L++EKR Y +S M MTEAAI++GLTRD+Y +LGEELD+ +W
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  598  AVRVYYKPFVDWIWGGCLLMALGGVLAISDKRYRIK  633
            AVR+YYKPFV WIW+G LLMALGG+L ++D RYR +
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

330) PCNPT3_10435 in NC_020802


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  464 bits (1749),  Expect = 7e-132, Method: Compositional matrix adjust.
 Identities = 366/629 (59%), Positives = 498/629 (80%), Gaps = 8/629 (1%)

Query  22   VYPLYGVYSGHQGAIKSAKTFTILQCIFVTLAFIILSYLFLINDFTVAYIASNSNSALPW  81
            VYPL GV  G+   + SA  F+ L  I V+ AF++L   F++NDFTVAY+A+NSN+ LP 
Sbjct  22   VYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   YYRLSAVWGSHEGslllwvfllslwsMAVAVLSKRLPIESVARVLAILGLLSLGFYLFVL  141
             YR++A WG+HEGSLLLWV+L+S W++AVAV+S+++P + VARVLA++G++  GF  F+L
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  FTSNPFLRTLPYFPVDGRDLNPLLQDVGLIIHPPMLYMGYVGFSVAFAFAIAALMEGRLD  201
            FTS PF RTLP FPV+GRDLNPLLQD GLI+HPP+LYMGYVGFSVAFAFAIAAL+ GRLD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  202  SAWAKWSRPWTMAAWIFLTLGIALGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIH  261
            SA ++ +RPWT+AAW+FLTLGI LGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+H
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  262  SLAVSEKRGVFKSWTVllaisafslsllGTFLVRSGILVSVHAFASDPSRGLFILAFLIL  321
            S+AV+E+R+ FK+WT+LL+I AFSL LLGTFLVRSG+LVSVHAFASDP+RG+FILAF++L
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  322  VIGGSLLLFALQASKVKSRGRYAFISRETFllinnilliaalivvllgtllplVHKQLGL  381
            V GGSLLLFA+++ +V+SR   A+ SRE++LL NN+LL+AA++VVLLGTLLPLVHKQLGL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  382  GSISIGEPFFNRMFSVLIVpfalflgaapllRWKRQKMSELFKPflhslllsilatflfl  441
            GSIS+GEPFFN MF+ L+VPFAL+LG +PL+RW R++  ++ K +  +++ +++ + L+ 
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLP  441

Query  442  YTFSSHFTWLALMGVFLGFWIVMTVTYELYLRSTHRNSLFPGLMKLGYSHWAMSLGHLGF  501
              +   +  ++ +G+ ++ WI +    E   R ++         K + S W+M  +HLG+
Sbjct  442  WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT-------KTSLSYWGMVAAHLGL  494

Query  502  AVLIIGITMTQNFSIERDVKLAVGDSIVFENYEFNFDAVEPLVGKNYTGTAGIFNIKKQG  561
            AV I GI+ +QN+S+ERDV++  GDS+ +++Y F F  V  + G NY G  +++ + ++G
Sbjct  495  AVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  562  QHVATMKAEKRIYSVQRMPMTEAAIDAGITRDLYIAMGEMLEDGSWAVRIYYKPFIRWIW  621
            +  A + AEKR+Y+  RM MTEAAID+G+TRDLY A+GE L++G+WAVR+YYKPF+RWIW
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

Query  622  fgpllmafagllmmlDSRYRVKKTPLKGG  650
             G LLMA++GLL + D+RYR ++ PL  +
Sbjct  615  AGGLLMALGGLLCLADPRYR-RRKPLPEA  642

331) H681_09165 in NC_020829


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  463 bits (1746),  Expect = 1e-131, Method: Compositional matrix adjust.
 Identities = 363/642 (57%), Positives = 489/642 (77%), Gaps = 7/642 (1%)

Query  1    MVPELGHLSLILALCMALVMSFFPLIGAWRGDRQWMSLARPAAWGQFAFLLFSFGCLSWA  60
            M+PE GH  L LAL +AL++S +PL G  RGD + M+ A   AW  F  +  +F  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FLHDDFsvayvasnsnsaLPWFYKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPEV  120
            F+ +DF+VAYVA+NSN+ LP  Y+ +A WGAHEGSLLLW L+++GWT+AV+VFSRQ+P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MLARVLAVMGMISTGFLLFLIITSNPFSRLLPQVPADGNDLNPLLQDPGLIFHPPMLYMG  180
            ++ARVLAVMGM+ +GFL F+++TS PF+R LP  P +G DLNPLLQDPGLIFHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVgfsvafafaiaallggrlDAAWARWSRPWTLVAWTFLGIGIVLGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIAALL+GRLD+A +R +RPWTL AW FL +GIVLGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLT  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPERGVFVLAFLLMVVGGSLTLFALRAPVVKSQVGFALWSRETllllnnlilV  360
            SVHAFASDP RG+F+LAF+++V GGSL LFA+R+  V+S+V  ALWSRE+LLL NN++L+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  VTASMILLGTLYPLVLDAISGAKLSVGPPYFNALFVPLIAILMLALAVGVLVRWKDTPTR  420
             +  ++LLGTL PLV   ++ + +SVG P+FN++F  L+  + L L+VG LVRW     R
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  WLRGMLTPVLIGTLVLGVAGSFLYGELHWEVLTVFL-LAAWVVLAGVRDFFDKVRHKGVI  479
             +R +L + ++ TLVL+V  + L  +    + +V + +A W+ + +V +  ++V +    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSR----  476

Query  480  AGAAGLNRSYWGMQLAHFGIAICAIGVVLTSQFSAQRDLRMEPGESVELAGYQFRFEGTH  539
            +  ++L  SYWGM  AH+G+A+   G+ ++ ++S +RD+RM +G+SV + +Y+F F   +
Sbjct  477  GTKTSL--SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  540  HFEGPNFTSDKGTIRVTRDGSEVAVLHPEKRLYSVQNSMMTEAGIHGSLTRDLYVALGEP  599
            ++ GPN+ ++ + I VTR+G   AVLH+EKRLY+    +MTEA+I+G+LTRDLY ALGE 
Sbjct  535  DITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  600  LENGAWAVRVHIKPFVRFIWlgglmmalggvlaalDRRYRLK  641
            L+NGAWAVR+  KPFVR IW GGL+MALGG+L   D RYR +
Sbjct  595  LDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

332) Maqu_1955 in NC_008740


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  463 bits (1746),  Expect = 1e-131, Method: Compositional matrix adjust.
 Identities = 324/600 (54%), Positives = 447/600 (75%), Gaps = 12/600 (2%)

Query  46   MFVFTALAFAILTHAFLVDDFSVAYVANNSNSMLPWYYKFSAVWGGHEGSLLLWILMLIG  105
            +F+  A AF +L HAF+V+DF+VAYVA NSN+ LP  Y+ +A WG+HEGSLLLW+L++ G
Sbjct  46   LFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSG  105

Query  106  WTLAVAIFSRKLPSVMVSQVLSVLGMVSVGFLLFIILTSNPFDRLLPNVPADGQDLNPLL  165
            WTLAVA+FSR++P+ +V++VL+V+GMV  GFL FI++TS PF R LP  P +G+DLNPLL
Sbjct  106  WTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLL  165

Query  166  QDIGLIMHPPMLYMGYVGFSVAFAFAIAALINGRLDAAWARWSRPWTTVAWSFLTVGIAL  225
            QD GLI HPP+LYMGYVGFSVAFAFAIAAL++GRLD+A +R +RPWT  AW FLT+GI L
Sbjct  166  QDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVL  225

Query  226  GSWWAYYELGWGGWWFWDPVENASLLPWLSGTALMHSLAVTEKRGVFKSWTVLLAIVTFA  285
            GS WAYYELGWGGWWFWDPVENAS++PWL+GTAL+HS+AVTE+R+ FK+WT+LL+I +F+
Sbjct  226  GSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFS  285

Query  286  LSLLGTFLVRSGVLTSVHAFASDPERGSFLLALLGITILASLTLYAFRAPVVHVRSRYGS  345
            L LLGTFLVRSGVL SVHAFASDP RG F+LA++ +   +SL L+A R+  V+ R   + 
Sbjct  286  LCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNAL  345

Query  346  LSREIFLLLNNVLLVSATMLVAIGTLYPLVLDYLDLGKLSIGEPFFNTTFSPlavatgll  405
             SRE +LL NNVLL++A ++V +GTL PLV   L+LG +S+GEPFFNT F+ L V+ +LL
Sbjct  346  WSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALL  405

Query  406  lgagIFSRWKKTDGGWLARKLLWPLAVSLIASAAVMIGYGGFAPWAFLGVFAAMWVTVAT  465
            LG G + RW + D  +  RKLLW+  V+ +  + ++       PW + + + AM  +V+ 
Sbjct  406  LGVGPLVRWGR-DRPRNIRKLLWAAVVTTLVLSVLL-------PWLLEDKIIAM-TAVGM  456

Query  466  VWDIWDKSTSRKGRWHGLKRQSR---SYWGMVLGHLGLAMVMAGATVVSNYGIERDVRMQ  522
                W    +     + + R ++   SYWGMV +HLGLA+ ++G +   NY++ERDVRM+
Sbjct  457  AMACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMR  516

Query  523  PGDRAMVGDYEIVFTDIGERRGANFTAQYGSFNVYLDGELVTDLHPEKRQYPVGMSVMTE  582
            +GD   + DY + F ++ +  G+N+ +  + + V  +GE  + LH+EKR Y  +  VMTE
Sbjct  517  AGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTE  576

Query  583  ADIDAGLFRDVFVAIGERISDDAWAIRLQYKPLVRWLWLGSLVMAIGGFLAIADKRYRIR  642
            A ID+GL RD++ A+GE + ++AWA+RL YKP+VRW+W G+L+MA+GG+L +AD RYR R
Sbjct  577  AAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

333) ccmF in NC_017067


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  463 bits (1743),  Expect = 2e-131, Method: Compositional matrix adjust.
 Identities = 327/600 (55%), Positives = 448/600 (75%), Gaps = 12/600 (2%)

Query  46   MFVFTALAFAILTHAFLVDDFSVAYVANNSNSMLPWYYKFSAVWGGHEGSLLLWILMLIG  105
            +F+  A AF +L HAF+V+DF+VAYVA NSN+ LP  Y+ +A WG+HEGSLLLW+L++ G
Sbjct  46   LFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSG  105

Query  106  WTLAVAIFSRKLPSVMVSQVLSVLGMVSVGFLLFIILTSNPFDRLLPNVPADGQDLNPLL  165
            WTLAVA+FSR++P+ +V++VL+V+GMV  GFL FI++TS PF R LP  P +G+DLNPLL
Sbjct  106  WTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLL  165

Query  166  QDIGLIMHPPMLYMGYVGFSVAFAFAIAALINGRLDAAWARWSRPWTTVAWSFLTVGIAL  225
            QD GLI HPP+LYMGYVGFSVAFAFAIAAL++GRLD+A +R +RPWT  AW FLT+GI L
Sbjct  166  QDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVL  225

Query  226  GSWWAYYELGWGGWWFWDPVENASLLPWLSGTALMHSLAVTEKRGVFKSWTVLLAIVTFA  285
            GS WAYYELGWGGWWFWDPVENAS++PWL+GTAL+HS+AVTE+R+ FK+WT+LL+I +F+
Sbjct  226  GSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFS  285

Query  286  LSLLGTFLVRSGVLTSVHAFASDPERGSFLLALLGITILASLTLYAFRAPVVHVRSRYGS  345
            L LLGTFLVRSGVL SVHAFASDP RG F+LA++ +   +SL L+A R+  V+ R   + 
Sbjct  286  LCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNAL  345

Query  346  LSREIFLLLNNVLLVSATMLVAIGTLYPLVLDYLDLGKLSIGEPFFNTTFSPlavatgll  405
             SRE +LL NNVLL++A ++V +GTL PLV   L+LG +S+GEPFFNT F+ L V+ +LL
Sbjct  346  WSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALL  405

Query  406  lgagIFSRWKKTDGGWLARKLLWPLAVSLIGSAGVMIGYGGFAPWAFLGVFAAMWVAVAT  465
            LG G + RW + D  +  RKLLW+  V+ +  + ++       PW + + + AM  AV+ 
Sbjct  406  LGVGPLVRWGR-DRPRNIRKLLWAAVVTTLVLSVLL-------PWLLEDKIIAM-TAVGM  456

Query  466  AWDLWDKSASRKGRWHGLKRQSR---SYWGMVLGHLGLAMVMAGATVVSNYGIERDVRMQ  522
            A   W    +     + + R ++   SYWGMV +HLGLA+ ++G +   NY++ERDVRM+
Sbjct  457  AMACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMR  516

Query  523  PGDRALVGDYEIVFTDIGERRGPNFTAQYGSFNVYLDGELVTDLHPEKRQYPVGMSVMTE  582
            +GD   + DY + F ++ +  GPN+ +  + + V  +GE  + LH+EKR Y  +  VMTE
Sbjct  517  AGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTE  576

Query  583  ADIDAGLFRDVFVAIGERISDDAWAIRLQYKPLVRWLWLGSLVMAIGGFLAIADKRYRIR  642
            A ID+GL RD++ A+GE + ++AWA+RL YKP+VRW+W G+L+MA+GG+L +AD RYR R
Sbjct  577  AAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

334) Neut_0059 in NC_008344


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  462 bits (1740),  Expect = 4e-131, Method: Compositional matrix adjust.
 Identities = 329/573 (58%), Positives = 436/573 (77%), Gaps = 8/573 (1%)

Query  47   FLLIIFSFATLGWSFIVKDFSVAYVAQNSNSQLPLLYRIAAVWGGHEGSLLLWLLMQTGW  106
            F+ +  +F  L  +F+V+DF+VAYVA NSN+QLP+ YR+AA WG+HEGSLLLW+L+ +GW
Sbjct  47   FICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGW  106

Query  107  AYAVSVFSKQLPDVMVARVLGVLGLVTAGFLLFVLLTSNPFERLVPA-PIEGMDLNPLLQ  165
            + AV+VFS+Q+P  +VARVL+V+G+V AGFL F+L+TS PF R +PA P+EG DLNPLLQ
Sbjct  107  TLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQ  166

Query  166  DIGLIFHPPLLYMGYVGFSVafafaiaallaGQLDSTWARWSRPWATAAWLFLTLGIALG  225
            D GLIFHPPLLYMGYVGFSVAFAFAIAALL+G+LDS+ +R +RPW+ AAW+FLTLGI LG
Sbjct  167  DPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLG  226

Query  226  SWWAYYELGWGGWWFWDPVENSSFIPWLVGTALIHSLAVTEKRASFKNWTVLLAISTFSL  285
            S WAYYELGWGGWWFWDPVEN+SF+PWL GTAL+HS+AVTE+RA+FK WT+LL+I +FSL
Sbjct  227  SAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSL  286

Query  286  SLLGAFLVRSGVLTSVHAFATDPRRGVFILMLFAVVVGSSLFLFALRAPKVGMGGRFELI  345
             LLG+FLVRSGVL SVHAFA+DP RG+FIL +  +V G+SL+LFA+R+ +V       L 
Sbjct  287  CLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALW  346

Query  346  SRESlllvnnvllavaagavilgTLYPLFIDALGLGKLSVGPPYFNAVFIPLMVPALLLM  405
            SRESLLL NNVLL  A   V+LGTL PL    LGLG +SVG P+FN++F  LMVP  LL+
Sbjct  347  SRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLL  406

Query  406  AVGPVANWKSAKISALMKHLHvpavvalvvgvgap-fllgRWSALVALGLALATWIATAV  464
            +VGP+  W   +   + K L  + V +LV++V  P +L ++  A+ A+G+A+A WIA   
Sbjct  407  GVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLA  466

Query  465  VKGIVDRM-RATRTGLRAQPRSWLGMHLAHLGIAVFVAGVTLVMGYETEQDVRMTPGSTV  523
            V   V+R+ R+T+T+L      W GM  AHLG+AV ++G+++   Y  E+DVRM +G +V
Sbjct  467  VAEAVQRVSRGTKTSL----SYW-GMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSV  521

Query  524  STGGYDLKFLGVNKAQGPNYVADIGDIELSRDGRVLRLLHPEKRSYISSEMPMTEAAIDA  583
            +  +Y + F  V    GPNY ++++ I ++R+G    +LH+EKR Y +S M MTEAAID+
Sbjct  522  TIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDG  581

Query  584  NGLRHVYVALGEPLADSAWSVRVYYKPFVDWIW  616
               R++Y ALGE L ++AW+VR+YYKPFV WIW
Sbjct  582  GLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

335) Lcho_1549 in NC_010524


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  459 bits (1731),  Expect = 2e-130, Method: Compositional matrix adjust.
 Identities = 352/630 (56%), Positives = 470/630 (75%), Gaps = 21/630 (3%)

Query  1    MIPEIGHFMLWLAVGVSLVLSTVPLVGAQRGRSDWMALARPLTWLLFVLVSISMVTLGSA  60
            M+PE GH +L LA+GV+L+LS  PL G  RG +  MA A  ++WLLF+ V+ +   L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVSHDFSVLYVASHSNTALPLAYRIAGIWGGHEGSlllwllmlclwmlAVAQFSKELPLP  120
            FV +DF+V YVA++SNT LP+ YR+A+ WG+HEGSLLLW+L++  W LAVA FS+++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  VLARILAVMGMVSVGFLAFTLMTSNPFDRLLPA-ALEGRDLNPLLQDPGMVIHPPMLYMG  179
            ++AR+LAVMGMV  GFLAF L TS PF R LPA ++EGRDLNPLLQDPG+++HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVafafaiaaliggnlDAQWARWSRPWTTAAWAFLTIGIALGSWWAYYELGWGGWW  239
            YVGFSVAFAFAIAAL++G LD+  +R +RPWT AAW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASFMPWLVGTALIHSLAVTEKRGSFKNWTVLLAIMAFSLSLVGTFLVRSGVLS  299
            FWDPVENASFMPWL GTAL+HS+AVTE+R++FK WT+LL+I AFSL L+GTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFATDPARGLFILGFLVVVIGASLTLYAWRAPSVGLGARFGLMSRETlllgnnvllv  359
            SVHAFA+DPARG+FIL+F+V+V G+SL L+A R+  V      +L SRE+LLLGNNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  vatgavllgtlYPLALDALNMGKISVGPPYFDTVFMPLMAPLVFLMGVGPMARWKQAEVP  419
             A   VLLGTL PL    L +G ISVG P+F+T+F  LM P+ +L+GVGP+ RW +    
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  DLARRLSWAAGV-TVVAALGSGW-LAGEITLVTTAGLLMGWWVVTSVATDLWEKIRPLPG  477
            ++ R+L WAA V T+V ++   W L + I  +T+ G+ M+ W+             ++ +
Sbjct  421  NI-RKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI-------------AVLA  466

Query  478  VATTRQRAAQLQRATV---GMMVAHLGVAAFIFGVALVKGYEVERDVQMNLGDTTTVAGY  534
            VA + QR ++  ++++   GM+ AHLG+A  I G+A+ + Y VERDV+M  GD+ T+ +Y
Sbjct  467  VAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  535  TFTFLGVREVQGPNYAAAQGQIKVTRNGQTVAEMHPEKRVYRVQRNPMTEAAIRSGFTGD  594
             FTF  VR++ GPNY ++ + I VTR+G+  A +H+EKR+Y   R  MTEAAI +G+T D
Sbjct  527  RFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  595  LYVSLGEPVAGSDAWIVRVYVKPFVNWIWG  624
            LY +LGE + +++AW VR+Y KPFV WIW+
Sbjct  587  LYAALGEEL-DNGAWAVRLYYKPFVRWIWA  615

336) H045_05165 in NC_020209


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  456 bits (1717),  Expect = 3e-129, Method: Compositional matrix adjust.
 Identities = 343/619 (56%), Positives = 459/619 (75%), Gaps = 7/619 (1%)

Query  7    IPELGQLAMILALCFAVVQAVLPLLGAWRGDRLWMSLAQPAAWGQFAFLLFAFGCLTYAF  66
            +PE G+  + LAL  A++ +V PL G  RGD   M+ A   AW  F  +  AF  L  AF
Sbjct  2    MPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAF  61

Query  67   MTDDFSVAYVANNSNSALPWYYKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQVM  126
            + +DF+VAYVA NSN+ LP  Y+ +A WGAHEGSLLLW L+++GWT+AV+VFSRQ+P  +
Sbjct  62   VVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADI  121

Query  127  LARVLAVMGMISIGFLLFLIMTSNPFTRILPQIPVDGRDLNPLLQDIGLIVHPPMLYMGY  186
            +ARVLAVMGM+  GFL F++ TS PF+R LP +PV+GRDLNPLLQD GLI HPP+LYMGY
Sbjct  122  VARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGY  181

Query  187  VgfsvafafaiaallggrlDAAWARWSRPWTIVAWAFLGIGITLGSWWAYYELGWGGWWF  246
            VGFSVAFAFAIAALL+GRLD+A +R +RPWT+ AW FL +GI LGS WAYYELGWGGWWF
Sbjct  182  VGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWF  241

Query  247  WDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLTS  306
            WDPVENASFMPWL GTAL+HS+AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL S
Sbjct  242  WDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVS  301

Query  307  VHAFASDPARGVFILIFLLFVVGGSLTLFALRAPVVKSQVGFNLWSRETlllgnnlvlvv  366
            VHAFASDPARG+FIL F+++V GGSL LFA+R+  V+S+V   LWSRE+LLLGNN++L+ 
Sbjct  302  VHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMA  361

Query  367  AASMILLGTLYPLVLDALSGAKLSVGPPYFNAMFVPLMGLLMAVMAVGMLVRWKDTPLKW  426
            A  ++LLGTL PLV   L+ + +SVG P+FN+MF  LM  +  +++VG LVRW     + 
Sbjct  362  AMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRN  421

Query  427  LAGMLMPVLLGSVVLAVIAG-IAYGDFNWAVLATFLLAGWVLLAGMRDIVDKTRHKGLIK  485
            +  +L + ++ ++VL+V+   +  + +         +A W+ + ++ + V++   +G   
Sbjct  422  IRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV-SRGTKT  480

Query  486  GLPGLTRSYWGMQIAHLGIAVCALGVVLSSQNSAERDLRLAPGESMDLAGYHFVFDGARH  545
            +L     SYWGM  AHLG+AV   G+ +S + S ERD+R+ +G+S+ + +Y+F F   R+
Sbjct  481  SL-----SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRD  535

Query  546  FEGQNFTSDRGTVRVIRNGEEVAVLHPEKRLYTVQSSMMTEAGIDAGFTRDLYVALGEPL  605
            + G N+ ++ + + V R+GE  AVLH+EKRLY     +MTEA+ID+G+TRDLY ALGE L
Sbjct  536  ITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEEL  595

Query  606  GEGAWAVRVHVKPFVRWIW  624
            ++GAWAVR+  KPFVRWIW
Sbjct  596  DNGAWAVRLYYKPFVRWIW  614

337) ccmF in NC_003910


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  455 bits (1713),  Expect = 5e-129, Method: Compositional matrix adjust.
 Identities = 297/586 (51%), Positives = 437/586 (75%), Gaps = 5/586 (0%)

Query  41   KLMTYARPLAYGMFFFTGISLVILAYSFVVDDFSIKYIAGHSNTHLPYYFKISAVWGGHE  100
            ++M+ A  +A  +F+  + ++ +L  +FVV+DF++ Y+AG+SNT+LP  ++++A WG+HE
Sbjct  34   RMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHE  93

Query  101  GSLLLWVFSLTAWTAAVARFSKGIEEEFISRVLAVMGMIAIGFIAFTLLTSNPFDRLWPN  160
            GSLLLWV+ +++WT AVA FS+ +  ++++RVLAVMGM+  GF+AF L+TS PF R  P 
Sbjct  94   GSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPA  153

Query  161  VPMEGRDLNPLLQDIGLIIHPPLLYLGYVGfavafafavaaLMAGKMDAAWARWSRPWTV  220
             P+EGRDLNPLLQD GLI+HPPLLY+GYVGF+VAFAFA+AAL++G++D+A +R +RPWT+
Sbjct  154  FPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTL  213

Query  221  GAWVCLTLGIALGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHSLAVTEKRGTFR  280
            +AWV LTLGI LGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS+AVTE+R+ F+
Sbjct  214  AAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFK  273

Query  281  NWTILLAIFAFGLSLLGTFLVRSGVITSVHSFAADPSRGIFILVILAIAIGGSLTLYAFR  340
             WT+LL+I AF+L LLGTFLVRSGV+ SVH+FA+DP+RG+FIL ++ +  GGSL L+A R
Sbjct  274  AWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVR  333

Query  341  ASTVASFSRFAFYSRETALLLCNVIlvvaavtvllgtlYPLLVDALGYGKISVGPPYFNA  400
            +  V S    A+ SRE+ LL  NV+L+ A + VLLGTL PL+   LG G ISVG P+FN+
Sbjct  334  GHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNT  393

Query  401  VFVPIMSILFIIMGIGPLIRWKKAKQGELRKRLLSSSVFSIAFGLLFPVIYGGEFNALVA  460
            +F  +M  + +++G+GPL+RW + +  ++RK L ++ V ++ +++L+P +  + + A+ A
Sbjct  394  MFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTA  453

Query  461  MGITLATWVFLVVVKEVKNQFQTVGKLTTSHIGMATAHagiaitivgvtivSMYESETNV  520
            +G+++A W+ ++ V E  ++     K + S  GM +AH G+A+TI G+++   Y  E +V
Sbjct  454  VGMAMACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDV  513

Query  521  KMALNERVTISGYQIEFKGIKHVEGPNYSAEQGQINIYKVTGPNESEFVSLLKPERRTYR  580
            +M   + VTI +Y++ F+ ++++ GPNY +  + I + +   P+     ++L +E+R Y 
Sbjct  514  RMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPE-----AVLHAEKRLYN  568

Query  581  VQTMGMTEAGIDPGLFRDVYVALGDPLPGGAWAIRVHYKPFVRWIW  626
               M MTEA+ID GL RD+Y ALG+ L  GAWA+R+ YKPFVRWIW
Sbjct  569  TSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

338) Sama_0248 in NC_008700


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  454 bits (1712),  Expect = 7e-129, Method: Compositional matrix adjust.
 Identities = 332/652 (51%), Positives = 468/652 (72%), Gaps = 14/652 (2%)

Query  1    MIPELGHFALITGLAFALLLSCVPLIGVARKDQYLVR----YAWPLAYGMFLFIALSVVT  56
            M+PE GH  L  +L+ ALLLS  PL GVAR D  ++     +AW L    F+ +A +   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLL----FICVAGAFFV  56

Query  57   LAYSFAVDDFSVAYVAHHSNSQLPSFFKIAAVWGGHEGSLLFWVFSLSVWAAAVAKFSKG  116
            L  +F V+DF+VAYVA +SN+QLP  +++AA WG+HEGSLL+WV+ +S W+ AVA FS+ 
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQ  116

Query  117  LEEVFTARVLAVLGMITVGFTLFMLLTSSPFERLFPA-PMEGRDLNPMLQDVGLIFHPPM  175
            +   + ARVLAV+GM+  GF  F+L+TS+PF R +PA P+EGRDLNP+LQD GLIFHPP+
Sbjct  117  VPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPL  176

Query  176  LYLGYVGFSVSFAFAIAALLSGRLDSAWARWSRPWTLAAWIFLTGGIALGSWWAYYELGW  235
            LY+GYVGFSV+FAFAIAALLSGRLDSA +R +RPWTLAAW+FLT GI LGS WAYYELGW
Sbjct  177  LYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGW  236

Query  236  GGWWFWDPVENASFMPWLIGTALVHSLIVTEKRGTFRNWTVllsifafslsllGTFIVRS  295
            GGWWFWDPVENASFMPWL GTAL+HS+ VTE+R+ F+ WT+LLSI AFSL LLGTF+VRS
Sbjct  237  GGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRS  296

Query  296  GVLTSVHSFAADPSRGMFIllllglaiggsltlFAFRASEMSSPAKFELWSKETMLLVCN  355
            GVL SVH+FA+DP+RGMFIL ++ L  GGSL LFA R+  + S  +  LWS+E++LL  N
Sbjct  297  GVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNN  356

Query  356  LLLTVACGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIILVMFVFMGIGPIIRWKK  415
            +LL  A   VLLGTL PL+   LG+G ISVG P+FN++F  +++   +++G+GP++RW +
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  416  AKEGEVKRQLLIPAIVSAVVGIAVPFIAGGAFNAWVALGIGAAVWITLATLRAGYNIVKT  475
             +  ++++ L  + + + V+++ +P +  + + A  A+G++ A WI++ ++  + + V  
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSR  476

Query  476  NEGLSLARMGRSQLGMIIAHLGIAVSVVGGTMVSNYSIEKSVRMGPGISHELAGYTFKFT  535
                SL     S  GM+ AHLG+AV++ G +   NYS+E+ VRM +G S  + +Y F F 
Sbjct  477  GTKTSL-----SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFR  531

Query  536  ETKNVVGPNYTAQQGQIEVYKGDKFLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTM  595
            E +++ GPNY +  + I V + +   ++L +++R YN   M MTEA+ID GL RDLY ++
Sbjct  532  EVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAAL  591

Query  596  GDPISATEYAVRLNYKPFVRWLWfggifmmvggffAASDKRYRVKAAASDKA  647
            G+ +     AVRL YKPFVRW+W GG++M +GG++  +D RYR + + ++ +
Sbjct  592  GEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

339) ccmF in NC_014012


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  453 bits (1708),  Expect = 1e-128, Method: Compositional matrix adjust.
 Identities = 322/650 (50%), Positives = 468/650 (72%), Gaps = 21/650 (3%)

Query  1    MIPELGHISLIIGlafafllaCVPLIGVARKDQYLVR----YAWPLTYGMFFFIAVSVIV  56
            M+PE GH  L ++L+ A+LL+  PL GVAR D  ++     +AW L    F+ +A + +V
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLL----FICVAGAFFV  56

Query  57   LGYSFAVDDFSVAYVAHHSNSQLPIFFKIAAVWGGHEGSLLFWVFALSGWTAAVAFFSKS  116
            L  +F V+DF+VAYVA +SN+QLP+ +++AA WG+HEGSLL+WV+ +SGWT AVA FS+ 
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQ  116

Query  117  LEEVFTARVLSVLAFIVVGFALFMILTSNPFERLFPT-PMEGRDLNPMLQDVGLIFHPPM  175
            +   + ARVL+V++ +  GF  F+++TS PF R +P+ P+EGRDLNP+LQD GLIFHPP+
Sbjct  117  VPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPL  176

Query  176  LYLGYVGFSVSFAFAISALMGGSLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELGW  235
            LY+GYVGFSV+FAFAI+AL++G LDSA +R +RPWTLAAWVFLT GI LGS WAYYELGW
Sbjct  177  LYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGW  236

Query  236  GGWWFWDPVENASFMPWLVGTALLHSVIVTEKRAAFRNWTVLLSITAFSLSLLGTFIVRS  295
            GGWWFWDPVENASFMPWL GTALLHS+ VTE+RA+F+ WT+LLSI AFSL LLGTF+VRS
Sbjct  237  GGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRS  296

Query  296  GVLTSVHSFASDPSRGMFIllllglavggsltlFAFRASQMKSPARFDLWSRETMLLVCN  355
            GVL SVH+FASDP+RGMFIL ++ L  GGSL LFA R+ +++S     LWSRE++LL  N
Sbjct  297  GVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNN  356

Query  356  ILLTVACGTVLLGTLYPLLIDALNMGKISVGPPYFNAvfvpiilvlfvfMGIGPNIRWKK  415
            +LL  A   VLLGTL PL+   L +G ISVG P+FN++F  +++ + +++G+GP +RW +
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  416  AKPGAVQAKVLVPALVAIIVGVAVPFLADGKFNTWValgiaaatwitlttlRAGYDLIKS  475
             +P  ++  +  + + +++++V +P L ++K+ +               ++     ++  
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIA---------MTAVGMAMACWIAVLAV  467

Query  476  KDGSLSLARLGRSQL---GMLIAHLGIAVSVVGGTMVSNYSIEKSVRMGPGISQELAGYT  532
             ++   ++R  ++ L   GM+ AHLG+AV++ G +   NYS+E+ VRM +G S  + +Y 
Sbjct  468  AEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  533  FSFIEIKNVVGPNYTAQQGQIEVYKDGDFITLLKPDRRQYNVRTMDMTEAGIDWGLFRDL  592
            F+F E++++ GPNY +  + I V ++G+  ++L +++R YN   M MTEA+ID GL RDL
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  593  YVTMGDPISPTEFAVRINYKPFVRWLWFGSIFMMVGGFFAASDKRYRAKK  642
            Y ++G+ +     AVR+ YKPFVRW+W G+++M +GG++  +D RYR +K
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

340) ccmF in NC_019670


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  453 bits (1707),  Expect = 2e-128, Method: Compositional matrix adjust.
 Identities = 336/619 (55%), Positives = 451/619 (73%), Gaps = 7/619 (1%)

Query  7    IPELGHLAMILALCFALAQAVVPLFGAWRGDRLWMSLAQPAAWGQFSFLLFAFGCLTYAF  66
            +PE GH  + LAL  AL  +V PL G  RGD   M+ A   AW  F  +  AF  L  AF
Sbjct  2    MPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAF  61

Query  67   MVDDFSVAYVANNSNSALPWYYKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQVM  126
            +V+DF+VAYVA NSN+ LP  Y+ +A WGAHEGSLLLW L+++GWT+AV+VFSRQ+P  +
Sbjct  62   VVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADI  121

Query  127  LARVLAVMGMISTGFLMFLIMTSNPFKRILPQMPSDGADLNPLLQDIGLIVHPPMLYMGY  186
            +ARVLAVMGM+ +GFL F++ TS PF R LP  P +G DLNPLLQD GLI HPP+LYMGY
Sbjct  122  VARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGY  181

Query  187  VGFSVAFAFAIAALMGGRLDAAWARWSRPWTIVAWAFLGIGITLGSWWAYYELGWGGWWF  246
            VGFSVAFAFAIAAL++GRLD+A +R +RPWT+ AW FL +GI LGS WAYYELGWGGWWF
Sbjct  182  VGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWF  241

Query  247  WDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLTS  306
            WDPVENASFMPWL GTAL+HS+AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL S
Sbjct  242  WDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVS  301

Query  307  VHAFASDPERGVFILIFLLFVVGGSLTLFALRAPVVKSQVGFNLWSRETlllgnnlvlvv  366
            VHAFASDP RG+FIL F+++V GGSL LFA+R+  V+S+V   LWSRE+LLLGNN++L+ 
Sbjct  302  VHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMA  361

Query  367  AASMILLGTLYPLILDAMTGAKLSVGPPYFNALFIPlmallmvvmavGVIVRWKDTPVKW  426
            A  ++LLGTL PL+   +  + +SVG P+FN++F  LM  + ++++VG +VRW     + 
Sbjct  362  AMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRN  421

Query  427  LLSML-TPvllgsaamavvagvaYGDFNWAVLATFMLAAWVLLAGARDIVDKTRHKGLIK  485
            +  +L ++V+       +++ +  + +         +A W+ + +  + V++   +G   
Sbjct  422  IRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV-SRGTKT  480

Query  486  GLPTLTRSYWGMQIAHLGIAVCALGVVLSSQNSAERDLRLAPGESMDLAGYHFIFEGAKH  545
            +L     SYWGM  AHLG+AV   G+ +S + S ERD+R+ +G+S+ + +Y+F F   ++
Sbjct  481  SL-----SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRD  535

Query  546  FEGPNFTSDKGTVRVIRNGKEISVLHPEKRLYTVQNSVMTEAGIDAGFTRDLYVALGEPL  605
            + GPN+ ++ + + V R+G   +VLH+EKRLY     VMTEA+ID+G+TRDLY ALGE L
Sbjct  536  ITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEEL  595

Query  606  GNGAWAVRVHVKPFVRWIW  624
            +NGAWAVR+  KPFVRWIW
Sbjct  596  DNGAWAVRLYYKPFVRWIW  614

341) Kkor_0983 in NC_013166


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  452 bits (1703),  Expect = 4e-128, Method: Compositional matrix adjust.
 Identities = 321/603 (54%), Positives = 454/603 (76%), Gaps = 11/603 (1%)

Query  46   IFLLILVSFVCLTIAFIQNDFSVAYVANHSNTQLPIYYRISAVWGSHEGSLLLWVLILTG  105
            +F+ +  +F  L  AF+ NDF+VAYVA +SNTQLP+ YR++A WG+HEGSLLLWVL+++G
Sbjct  46   LFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSG  105

Query  106  WIFAVSKFSKSLPDEMTARVLGVMGLIAVGFVSFTLFTSNPFERALPFIPIDGADLNPLL  165
            W +AV+ FS+ +P ++ ARVL+VMG++  GF++F LFTS PF R+LP +P++G DLNPLL
Sbjct  106  WTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLL  165

Query  166  QDFGLIVHPPMLYMGYVGFSVVFAFAIAGLLHGELDHHWAKWSRPWTVVAWIFMTIGIAL  225
            QD GLI HPP+LYMGYVGFSV FAFAIA+LL G LD   ++ +RPWT+ AW+F+T+GI L
Sbjct  166  QDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVL  225

Query  226  GSWWAYYELGWGGWWFWDPVENASFLPWLAGTALIHSLAATEKRGVFKSWTVllailtfs  285
            GS WAYYELGWGGWWFWDPVENASF+PWLAGTAL+HS+A TE+R+ FK+WT+LL+I +FS
Sbjct  226  GSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFS  285

Query  286  lsllgtflVRSGVLTSVHAFANDPVRGKFILVFLAIVVGASLLLYAIQSSKIRSKSNFTL  345
            L LLGTFLVRSGVL SVHAFA+DP RG FIL F+ +V G+SLLL+A+++ ++RS+ N +L
Sbjct  286  LCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNAL  345

Query  346  VSREVallfnnallaVSTFVVLLGTLHPLMIEAFTDGKSSVGPPYFNLMFSVFFIPILLL  405
             SRE  LL NN LL  + +VVLLGTL PL+   +  G  SVG P+FN MF+ + +P+ LL
Sbjct  346  WSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALL  405

Query  406  MPFGQQIKWKKDDLPALLKKYIWWFSSCIILAFILTFGLNGFTFDELEPMAVIGTILGLW  465
            +  G  ++W +D  P  ++K +W   + ++ +++L+  L  +  D + +M+ +G  ++ W
Sbjct  406  LGVGPLVRWGRDR-PRNIRKLLW---AAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACW  461

Query  466  VIAGTVKYIQLQSEKGQTRWAGMRKISRSYWGMIFAHIgvavttlgvvltSYYSIEKDIR  525
            +   +V     +  +G        K S SYWGM+ AH+G+AVT  G+ ++  YS+E+D+R
Sbjct  462  IAVLAVAEAVQRVSRGT-------KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVR  514

Query  526  ieitetveveGLSVQFKDFKNIQGPNYISSKAIFEVSKSGDFIAELKPEKRRYNASQMVM  585
            +   ++V +++    F++ ++I GPNY ++ A++ V++ G+  A L +EKR YN+S+MVM
Sbjct  515  MRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVM  574

Query  586  TEAAIDPGLFRDVYIAMGEPLDNGAWAIRVYYKPFVRWIWLGAIFMALGGILAMTDKRYR  645
            TEAAID GL RD+Y A+GE LDNGAWA+R+YYKPFVRWIW G+++MALGG+L ++D RYR
Sbjct  575  TEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

Query  646  EKK  648
             +K
Sbjct  635  RRK  637

342) ccmF in NC_014803


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  448 bits (1689),  Expect = 5e-127, Method: Compositional matrix adjust.
 Identities = 334/643 (52%), Positives = 496/643 (78%), Gaps = 11/643 (1%)

Query  1    MIPELGYFSLTLAMVLSILLCIFPLWGAHTGNLRLMRAAPSLAIGQFAFVALSFAALIYA  60
            M+PE G   L LA+ +++LL ++PLWG   G+ R+M +A  +A   F  VA +F  L+ A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   SLTDDFTVSYVAYHSSSTLPWYYKITSTWGGHEGAILLWLLMQAGWTAVVAVRSKSLPWv  120
             + +DFTV+YVA +S++ LP  Y++++TWG+HEG++LLW+L+ +GWT  VAV S+ +P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  lrarvlgvlgflgvgfMMYTLLLSSPFERLLPYFPVEGRDLNPLLQDPGMIIHPPLLYMG  180
            + ARVL+V+G +  GF+ + L+ S+PF R LP FPVEGRDLNPLLQDPG+I+HPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGLSVAFAFAIAALLTGKLDNTWAKWSRPWTMTAWGFLTLGITIGSWWAYSELGWGGWW  240
            YVG+SVAFAFAIAALL+G+LD++ ++ +RPWT++AW FLTLGI +GS WAY ELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLMPWLVATALLHSLSVTEKRGVFKSWTVllaiaafslsllGTFIVRSGIIV  300
            FWDPVENAS+MPWL +TALLHS++VTE+R+ FK+WT+LL+I AFSL LLGTF+VRSG++V
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFATDPDRglfilgflavvvggglalyglRVSQVKSEGRYKFVSREVALWLNNIFLV  360
            SVHAFA+DP RG+FIL+F+ +V GG+L L+++R  +V+S     + SRE  L  NN++L+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  VATLIVLLGTLLPMVHKEMGLGSISIGEPFFNKMFAILLVPFAILMGIGPFLRWKQNKWA  420
             A L+VLLGTLLP+VHK++GLGSIS+GEPFFN MF+ L+VPFA+L+G+GP++RW +++  
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  FLQNKIFVGALVSIIITC--AWLFSSYEVVtpltllattlGVWIFVATFIDLYTKAAVHG  478
             +++ +  + + +++++   +WL+   + + ++T ++ +++ WI V +  +   + + +G
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLE--DKIIAMTAVGMAMACWIAVLAVAEAVQRVS-RG  477

Query  479  SLKLGIKRLGLSYWAMVLGHVGLAFVIAGITLTSAYSVERDVSMKPGDSVQLNQYQYRFE  538
            +      + +LSYW+MV +H+GLA  I+GI+++  YSVERDV M++GDSV +++Y++ F 
Sbjct  478  T------KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFR  531

Query  539  GVKTIRGANYSGHAGVVTVLKGNDTVTRLYAEKRRYDIGMQFMTEAAIDAGFTRDLYLAL  598
             V+ I G+NY G  +++ V +  +  + L AEKR Y+ +   MTEAAID+G+TRDLY AL
Sbjct  532  EVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAAL  591

Query  599  GEQLSEGAWSLRIYHKPFVRWMWIGGILISLAGFVILFDKRYR  641
            GE+L +GAW++R+Y KPFVRW+W GG+L++L+G++ L D RYR
Sbjct  592  GEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

343) D521_1538 in NC_020417


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  448 bits (1686),  Expect = 7e-127, Method: Compositional matrix adjust.
 Identities = 324/577 (57%), Positives = 445/577 (78%), Gaps = 3/577 (0%)

Query  60   SFYSNDFSVLYVAEHSNSQMPVIYRLGAVWGGHEGSLLLWIFLLSTWTFLVAQLSKSLDE  119
            +F  NDF+V YVA +SN+Q+PV YR++A WG+HEGSLLLW++L+S WT+ VA +S+ +  
Sbjct  60   AFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPA  119

Query  120  FMVARvigvlglvitglllfvlMTSNPFERLLPA-AQDGRSLNPLLQDPGLVFHPPMLYM  178
             +VARV++V+G+V +G+L F+L TS PF R LPA + +GR LNPLLQDPGL+FHPP+LYM
Sbjct  120  DIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYM  179

Query  179  GYVGFSVAFAFAIASLLSGRLDAAWARWSRPWTTAAWVFLTLGIALGSWWAYYELGWGGW  238
            GYVGFSVAFAFAIA+LLSGRLD+A +R +RPWT AAWVFLTLGI LGS WAYYELGWGGW
Sbjct  180  GYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGW  239

Query  239  WFWDPVENASFIPWLVGTALLHSLAVTEKRGGFKSWTVLLAITAFSLSLLGTFLVRSGVL  298
            WFWDPVENASF+PWL GTALLHS+AVTE+R+GFK+WT+LL+I AFSL LLGTFLVRSGVL
Sbjct  240  WFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVL  299

Query  299  TSVHAFATDPKRGIFILIFLVLVVGSSLTLYAWRAPKSTLGGKFSFTSRETFILLGNVFl  358
             SVHAFA+DP RG+FIL F+VLV G+SL L+A R+ +     + ++ SRE+++L  NV+L
Sbjct  300  VSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLL  359

Query  359  vvsaasvllGTLYPLLIDALHLGKISVGPPYFNSVFVPIMIPLLVLMGVGPWTSWKNSNL  418
            + +   VLLGTL PL+   L LG ISVG P+FN++F  +M+P+ +L+GVGP   W     
Sbjct  360  MAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRP  419

Query  419  LDVIKRLWiaalvaviaaaliPFAMGE-FTWLSSLGFLLAFWVIASGVLQII-RQAKAGK  476
             ++ K LW A + +++ + L+P  + + +  ++++G  +A W+   +V + + R +++ K
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTK  479

Query  477  PTRSFIGMQVAHLGIAVFVIGVTMVGAYQEEKDVRMLAGESVSVGGYQIQLQSVNAVPGP  536
             + S+ GM  AHLG+AV + G++    Y  E+DVRM AG+SV++ +Y++ ++ V  + GP
Sbjct  480  TSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGP  539

Query  537  NYKAMQGTFLLTRNGKLEATMYPEKRSYFSSTMPMTEAAIDAGLTRDIYVSLGEELDDKA  596
            NY++  + + +TR+G  EA + +EKR Y +S M MTEAAID+GLTRD+Y +LGEELD+ A
Sbjct  540  NYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGA  599

Query  597  WAVRVYYKPFVDWIWGGCVLMALGGLLAMSDKRYRMK  633
            WAVR+YYKPFV WIW+G +LMALGGLL ++D RYR +
Sbjct  600  WAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

344) PSEBR_a1515 in NC_015379


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  447 bits (1682),  Expect = 2e-126, Method: Compositional matrix adjust.
 Identities = 341/619 (56%), Positives = 456/619 (74%), Gaps = 7/619 (1%)

Query  7    IPELGHLAMILALCFSLVQAVVPLLGAWRGDRLWMSLAQPAAWGQFAFMLFAFGCLTYAF  66
            +PE GH  + LAL  +L+ +V PL G  RGD   M+ A   AW  F  +  AF  L  AF
Sbjct  2    MPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAF  61

Query  67   MADDFSVEYVASNSNSALPWYYKFSAVWGAHEGSLLLWALILAGWTFAVSVFSRQLPQVM  126
            + +DF+V YVA+NSN+ LP  Y+ +A WGAHEGSLLLW L+++GWT+AV+VFSRQ+P  +
Sbjct  62   VVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADI  121

Query  127  LARVLAVMGMISTGFLLFLIVTSNPFERILPQMPTDGRDLNPLLQDIGLIVHPPMLYMGY  186
            +ARVLAVMGM+ +GFL F++ TS PF R LP  P +GRDLNPLLQD GLI HPP+LYMGY
Sbjct  122  VARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGY  181

Query  187  VgfsvafafaiaallggrlDAAWARWSRPWTIVAWAFLGIGITLGSWWAYYELGWGGWWF  246
            VGFSVAFAFAIAALL+GRLD+A +R +RPWT+ AW FL +GI LGS WAYYELGWGGWWF
Sbjct  182  VGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWF  241

Query  247  WDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLTS  306
            WDPVENASFMPWL GTAL+HS+AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL S
Sbjct  242  WDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVS  301

Query  307  VHAFASDPERGVFILMFLLFVVGGSLTLFALRAPVVKSQVGFNLWSRETlllgnnlvlvv  366
            VHAFASDP RG+FIL F+++V GGSL LFA+R+  V+S+V   LWSRE+LLLGNN++L+ 
Sbjct  302  VHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMA  361

Query  367  AASMILLGTLYPLVLDALSGAKLSVGPPYFNALFIPLMAILMVVMAIGMLVRWKDTPVKW  426
            A  ++LLGTL PLV   L+ + +SVG P+FN++F  LM  + +++++G LVRW     + 
Sbjct  362  AMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRN  421

Query  427  LLGMltpvllgtaalavvagvaYGDFNWAVLAT-FVLAAWVLLAGVRDIFDKTRHKGLIK  485
            +  +L + ++ T  L+V+      D   A+ A    +A W+ + +V +  ++   +G   
Sbjct  422  IRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV-SRGTKT  480

Query  486  GLPTLTRSYWGMQVAHLGIAVCALGVVLSSQNSAERDLRLAPGESMDLAGYQFVFEGAKH  545
            +L     SYWGM  AHLG+AV   G+ +S + S ERD+R+ +G+S+ + +Y+F F   ++
Sbjct  481  SL-----SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRD  535

Query  546  FEGPNFTSDKGTVRVLRNGQEITVLHPEKRLYTVQNSVMTEAGIDAGFTRDLYVALGESL  605
            + GPN+ ++ + + V R+G+  +VLH+EKRLY     VMTEA+ID+G+TRDLY ALGE L
Sbjct  536  ITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEEL  595

Query  606  GDGAWAVRVHVKPFVRWIW  624
            ++GAWAVR+  KPFVRWIW
Sbjct  596  DNGAWAVRLYYKPFVRWIW  614

345) ccmF in NC_016830


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  447 bits (1682),  Expect = 2e-126, Method: Compositional matrix adjust.
 Identities = 341/619 (56%), Positives = 456/619 (74%), Gaps = 7/619 (1%)

Query  7    IPELGHLAMILALCFAVVQAVVPLLGAWRGDRLWMSLAQPAAWGQFAFMLFAFGCLTYAF  66
            +PE GH  + LAL  A++ +V PL G  RGD   M+ A   AW  F  +  AF  L  AF
Sbjct  2    MPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAF  61

Query  67   MADDFSVEYVASNSNSALPWYYKFSAVWGAHEGSLLLWALILAGWTFAVSVFSRQLPQVM  126
            + +DF+V YVA+NSN+ LP  Y+ +A WGAHEGSLLLW L+++GWT+AV+VFSRQ+P  +
Sbjct  62   VVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADI  121

Query  127  LARVLAVMGMISTGFLLFLIVTSNPFERILPQMPTDGRDLNPLLQDIGLIVHPPMLYMGY  186
            +ARVLAVMGM+ +GFL F++ TS PF R LP  P +GRDLNPLLQD GLI HPP+LYMGY
Sbjct  122  VARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGY  181

Query  187  VgfsvafafaiaallggrlDAAWARWSRPWTIVAWAFLGIGITLGSWWAYYELGWGGWWF  246
            VGFSVAFAFAIAALL+GRLD+A +R +RPWT+ AW FL +GI LGS WAYYELGWGGWWF
Sbjct  182  VGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWF  241

Query  247  WDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLTS  306
            WDPVENASFMPWL GTAL+HS+AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL S
Sbjct  242  WDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVS  301

Query  307  VHAFASDPERGVFILMFLLFVVGGSLTLFALRAPVVKSQVGFNLWSRETlllgnnlvlvv  366
            VHAFASDP RG+FIL F+++V GGSL LFA+R+  V+S+V   LWSRE+LLLGNN++L+ 
Sbjct  302  VHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMA  361

Query  367  AASMILLGTLYPLVLDALSGAKLSVGPPYFNALFIPLMAILMVVMAIGMLVRWKDTPVKW  426
            A  ++LLGTL PLV   L+ + +SVG P+FN++F  LM  + +++++G LVRW     + 
Sbjct  362  AMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRN  421

Query  427  LLGMltpvllgtaalavvagvaYGDFNWAVLA-TFVLAAWVLLAGVRDIFDKTRHKGLIK  485
            +  +L + ++ T  L+V+      D   A+ A    +A W+ + +V +  ++   +G   
Sbjct  422  IRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV-SRGTKT  480

Query  486  GLPTLTRSYWGMQIAHLGIAVCALGVVLSSQNSAERDLRLAPGESMDLAGYQFVFEGAKH  545
            +L     SYWGM  AHLG+AV   G+ +S + S ERD+R+ +G+S+ + +Y+F F   ++
Sbjct  481  SL-----SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRD  535

Query  546  FEGPNFTSDKGTVRVIRNGQEITVLHPEKRLYTVQNSVMTEAGIDAGFTRDLYVALGESL  605
            + GPN+ ++ + + V R+G+  +VLH+EKRLY     VMTEA+ID+G+TRDLY ALGE L
Sbjct  536  ITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEEL  595

Query  606  GDGAWAVRVHVKPFVRWIW  624
            ++GAWAVR+  KPFVRWIW
Sbjct  596  DNGAWAVRLYYKPFVRWIW  614

346) Maqu_1411 in NC_008740


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  446 bits (1680),  Expect = 2e-126, Method: Compositional matrix adjust.
 Identities = 314/587 (54%), Positives = 437/587 (75%), Gaps = 9/587 (1%)

Query  69   MAFAEPMAWGQFVFLLVSYASLTASFLLDDFSVDYVARNSNSMLP-WYYKFTAVWGSHEG  127
            MA A   AW  F+ +  ++  L  +F+++DF+V YVA NSN+ LP WY + +A WG+HEG
Sbjct  36   MASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWY-RVAATWGAHEG  94

Query  128  SVLLWSLILSGWGFAVSLFSRQLPRDMLARVLGVLGVVSAGFLLFIVVTSSPFDRLLPGM  187
            S+LLW L++SGW +AV++FSRQ+P D++ARVL+V+G+V AGFL FI+ TS+PF R LP+ 
Sbjct  95   SLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAF  154

Query  188  PADGADLNPLLQDVGLIIHPPMLYMGYVGFSVVFAFAIAALIEGRLDAAWTRWVRPWTNI  247
            P +G DLNPLLQD GLI+HPP+LYMGYVGFSV FAFAIAAL+ GRLD+A TR  RPWT  
Sbjct  155  PVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLA  214

Query  248  AWAFLTLGIALGSWWAYYELGWGGWWFWDPVENASLLPWLSGTALIHSLAVTEKRGTFKS  307
            AW FLTLGI LGS WAYYELGWGGWWFWDPVENAS++PWL+GTAL+HS+AVTE+R+ FK+
Sbjct  215  AWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKA  274

Query  308  WTALLAIftfslsllgtflVRSGVLTSVHAFANDPSRGLFILALLGITVGVSLLIFALRA  367
            WT LL+I +FSL LLGTFLVRSGVL SVHAFA+DP+RG+FILA++ +  G SLL+FA+R+
Sbjct  275  WTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRG  334

Query  368  PRMSANAGFSWLSRDAlllinnillVIMTITVLMGTLYPLILDALGLGKVSIGAPYFNSL  427
             R+ +    +  SR++LLL NN+LL+   + VL+GTL PL+   LGLG +S+G P+FN++
Sbjct  335  HRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTM  394

Query  428  FVPLTVMLCAFMGLGPVSRWKQMPgrelfrrllgaglaalaiaVSIPFLYNGQWNVAVAL  487
            F  L V +  ++G+GP+ RW +   R++ + L +A +++L ++V +P L +++     A+
Sbjct  395  FTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAV  454

Query  488  GMVAALWVVLGVVRDLFDKVRNASSALAGLRKLTPSYWGMVVGHVGLAVTIVGVVMVSNY  547
            GM  A W+ +  V +  ++V  ++       K + SYWGMV +H+GLAVTI G+    NY
Sbjct  455  GMAMACWIAVLAVAEAVQRVSRGT-------KTSLSYWGMVAAHLGLAVTITGIAFSQNY  507

Query  548  AMERNVRLDIGEQVNLGGYDFTLTELGERRGPNFLADTATIEVAREGRIVTTLYPEKRLY  607
            ++ER+VR+  G+ V + +Y FT+ E+ +  GPN+ ++ A I V+R+G   + L +EKRLY
Sbjct  508  SVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLY  567

Query  608  IARGQPMTDVALDPGLLRDLYVAMGEELDDGSWAMRLQVKPFVRWLW  654
             +    MT+ A+D GL RDLY A+GEELD+G+WA+RL  KPFVRW+W
Sbjct  568  NTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

347) Shew_0193 in NC_009092


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  446 bits (1679),  Expect = 3e-126, Method: Compositional matrix adjust.
 Identities = 330/647 (52%), Positives = 469/647 (73%), Gaps = 20/647 (3%)

Query  1    MIPELGHFSLIIGlafafllaSVPLIGVARKDQYLVR----YAWPLSYGMFFFIALSVIV  56
            M+PE GH  L ++L+ A+LL+  PL GVAR D  ++     +AW L    F+ +A + +V
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLL----FICVAGAFFV  56

Query  57   LGYSFAVDDFSVAYVAHHSNSQLPIFFKIAAVWGGHEGSLLFWVFALSVWTASVAFFSKG  116
            L  +F V+DF+VAYVA +SN+QLP+ +++AA WG+HEGSLL+WV+ +S WT +VA FS+ 
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQ  116

Query  117  LEEVFTARVLAILAMIVIGFCLFMLLTSSPFERLFPI-PMEGRDLNPMLQDVGLIFHPPM  175
            +   + ARVLA+++M+  GF  F+L+TS+PF R +P  P+EGRDLNP+LQD GLIFHPP+
Sbjct  117  VPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPL  176

Query  176  LYLGYVGFSVSFAFAIAALMGGRLDSAWARWSRPWTLAAWIFLTGGISLGSWWAYYELGW  235
            LY+GYVGFSV+FAFAIAAL++GRLDSA +R +RPWTLAAW+FLT GI LGS WAYYELGW
Sbjct  177  LYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGW  236

Query  236  GGWWFWDPVENASFMPWLIGTALLHSVIVTEKRATFRNWTVllsifafslsllGTFIVRS  295
            GGWWFWDPVENASFMPWL GTALLHS+ VTE+RA F+ WT+LLSI AFSL LLGTF+VRS
Sbjct  237  GGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRS  296

Query  296  GVLTSVHSFAADPSRGMFIllllglaiggsltlFAFRASDMKSPARFELMSKETMLLVGN  355
            GVL SVH+FA+DP+RGMFIL ++ L  GGSL LFA R+  ++S     L S+E++LL  N
Sbjct  297  GVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNN  356

Query  356  ILLTVACGTVLLGTLYPLLIDALNMGKISVGPPYFNAVFVPIALVLFAFMGIGPSIRWKR  415
            +LL  A   VLLGTL PL+   L +G ISVG P+FN++F  + + +  ++G+GP +RW R
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  416  AKAGELRAKLLVPAIVSAVIGVATPFLVDGKFNAWVMFGIGLAAWVTVATLRAAYDIMQS  475
             ++ ++R  L  + + + V++V  P L+++K+ A    G+++A W++V ++  A +    
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQ----  472

Query  476  KDGLSLARMGRSQL---GMIIAHLGIAVSVVGATMVSNYSIEKSVRMGPGITQELAGYSF  532
                 ++R  ++ L   GM+ AHLG+AV++ G +   NYS+E+ VRM +G +  + +Y F
Sbjct  473  ----RVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRF  528

Query  533  HYIETKNVVGPNYTAQQGQVEVTKDGEFITLLKPDRRQYNVRTMDMTEAGIDWGLFRDLY  592
             + E +++ GPNY +  + + VT++GE  ++L +++R YN   M MTEA+ID GL RDLY
Sbjct  529  TFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLY  588

Query  593  ITMGDPISRTEFAVRLNYKPFVRWLWFGSIFMMVGGLFAASDKRYRR  639
             ++G+ +     AVRL YKPFVRW+W G+++M +GGL+  +D RYRR
Sbjct  589  AALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRR  635

348) HP15_2281 in NC_017506


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  445 bits (1678),  Expect = 4e-126, Method: Compositional matrix adjust.
 Identities = 328/601 (55%), Positives = 450/601 (75%), Gaps = 12/601 (1%)

Query  46   MFVFIGLAFAVLTHAFVTDDFSVAYVANNSNSLLPWYYKFSAVWGGHEGSLLLWILMLAG  105
            +F+ ++ AF VL HAFV +DF+VAYVA NSN+ LP  Y+ +A WG+HEGSLLLW+L+++G
Sbjct  46   LFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSG  105

Query  106  WTLAVAVFSRRLPAVMISQVLSVLGMVCVGFLLFIVLTSNPFDRLLPNVPADGADLNPLL  165
            WTLAVAVFSR++PA ++++VL+V+GMVC GFL FI++TS PF R LP  P +G DLNPLL
Sbjct  106  WTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLL  165

Query  166  QDFGLIVHPPMLYMGYVGfavafafaiaaLINGRLDAAWARWSRPWTTVAWAFLSLGIAL  225
            QD GLI HPP+LYMGYVGF+VAFAFAIAAL++GRLD+A +R +RPWT  AW FL+LGI L
Sbjct  166  QDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVL  225

Query  226  GSWWAYYELGWGGWWFWDPVENASLLPWLSGTALMHSLAVTEKRGVFKSWTVLLAIVTFA  285
            GS WAYYELGWGGWWFWDPVENAS++PWL+GTAL+HS+AVTE+R+ FK+WT+LL+I +F+
Sbjct  226  GSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFS  285

Query  286  LSLLGTFLVRSGVLTSVHAFASDPERGTFLLGLLAVTVIASLALYAFRAPVVHVRSRYGS  345
            L LLGTFLVRSGVL SVHAFASDP RG F+L+++ +   +SL L+A R+  V+ R   + 
Sbjct  286  LCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNAL  345

Query  346  LSREVFlllnnvllvsatllvavgtlYPLVLDYLDLGKLSIGEPFFNLTFSPlavatgll  405
             SRE +LL NNVLL++A L+V +GTL PLV   L+LG +S+GEPFFN  F+ L V+ +LL
Sbjct  346  WSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALL  405

Query  406  lgagIFSRWKKTDGGWLARKLLWPLAVSIVATTAVLIGYGGFKPWAFLGIFSAMWVTVAT  465
            LG G + RW + D  +  RKLLW+  V+ +  + +L       PW + + + AM  +V+ 
Sbjct  406  LGVGPLVRWGR-DRPRNIRKLLWAAVVTTLVLSVLL-------PWLLEDKIIAM-TAVGM  456

Query  466  FWDLWEKSSSRKGRIHGLKRQSR---SYFGMVLGHLGLAITMAGATVVSNYGIERDVRMV  522
                W    +    ++ + R ++   SY GMV +HLGLA+T++G +   NY++ERDVRM 
Sbjct  457  AMACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMR  516

Query  523  PGDVATVGDYQFVFKDIGARQGPNFTAQYGTFDVMLDGERVSVLHPEKRQYSVGMSVMTE  582
            +GD  T+ DY+F F+++    GPN+ +  + ++V  +GE  +VLH+EKR Y+ +  VMTE
Sbjct  517  AGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTE  576

Query  583  ADIDAGLFRDIFVAIGERITDEAWAIRLQYKPLVRWLWLGSLFMAAGGFLAISDRRYRIR  642
            A ID+GL RD++ A+GE + + AWA+RL YKP+VRW+W G+L+MA GG+L ++D RYR R
Sbjct  577  AAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

Query  643  E  643
             
Sbjct  637  K  637

349) cycK in NC_016112


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  445 bits (1675),  Expect = 5e-126, Method: Compositional matrix adjust.
 Identities = 333/623 (54%), Positives = 459/623 (74%), Gaps = 12/623 (1%)

Query  1    MIPELGHFSLILALCMAVMLGIVPIVGSFRAIPGWIAVARPAAFGQLFFVGLS--YLCLT  58
            M+PE GH  L LAL +A++L++ P+ G  R+ +    +A ++ F+ L+F+ ++  ++ L 
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDA--RMMASAGVFAWLLFICVAGAFFVLV  58

Query  59   YAFLTHDFSVAYVANNSNTHLPVLYLVSGVWGAHEGSLLLWALSLTIWTGLVAQFSRSIP  118
             AF+ +DF+VAYVA NSNT+LPV Y V++ WGAHEGSLLLW L ++ WT  VA FSR +P
Sbjct  59   HAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVP  118

Query  119  DATIARVLGVMGLVSIGfllflllTSNPFERMIPA-PPEGRDLNPLLQDPGLAIHPPMLY  177
               +ARVL+VMG+V  GFL F+L+TS PF R +PA P EGRDLNPLLQDPGL +HPP+LY
Sbjct  119  ADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLY  178

Query  178  MGYVGFSVAFAFSIAALLEGRLDSAWARWSRPWTNIAWMFLTLGITLGSWWAYYELGWGG  237
            MGYVGFSVAFAF+IAALL GRLDSA +R +RPWT  AW+FLTLGI LGS WAYYELGWGG
Sbjct  179  MGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGG  238

Query  238  WWFWDPVENASFMPWLVGTALIHSLAASEKRGVFKTWTVllaifafslsllGTFLVRSGV  297
            WWFWDPVENASFMPWL GTAL+HS+A +E+R+ FK+WT+LL+I AFSL LLGTFLVRSGV
Sbjct  239  WWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGV  298

Query  298  LTSVHAFASDPARGLFILIFLAIVVGGSLLLYAIRAPAVKSSASFEMISKESAlllnnvl  357
            L SVHAFASDPARG+FIL F+ +V GGSLLL+A+R+  V+S  +  + S+ES LL NNVL
Sbjct  299  LVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVL  358

Query  358  lvvTAASILVGTLYPLFIDALGMGKISVGPPYFNAIFIPLMAPLAVVSGIGVLLRWKKDQ  417
            L+ +   +L+GTL PL    LG+G ISVG P+FN++F  LM P+A++ G+G L+RW +D+
Sbjct  359  LMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR  418

Query  418  FNALALRIRWLMLGCLVLGAALPLLMPFYSwaaaigltlalwttaltglaFSERLGHKMP  477
                +  IR L+ + +V    L++L+P       I++T    + A     ++  +++ + 
Sbjct  419  ----PRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLA--VAEAVQ  472

Query  478  DFTALLKVPRAFYGMTLAHLGIAVFIVGITLTSVYSIEKDVRMAPGDKLEMSGYVFEFHG  537
              +   K + ++ GM  AHLG+AV I GI+++  YS+E+DVRM +GD + + +Y F F+ 
Sbjct  473  RVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  538  IDVVDGPNYRAQQGHLTVSYDDKTVAKLEPQKRIYRVQQMPMTEAAIDAGLFRDLFVAIG  597
            +  + GPNYR+  + + V+ ++   A L+++KR+Y   +M MTEAAID+GL RDL+ A+G
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  598  EPLGDSGAWSMRVYYKAFIRWIW  620
            E L D+GAW++R+YYK+F+RWIW
Sbjct  593  EEL-DNGAWAVRLYYKPFVRWIW  614

350) Nhal_0852 in NC_013960


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  445 bits (1676),  Expect = 5e-126, Method: Compositional matrix adjust.
 Identities = 330/622 (54%), Positives = 457/622 (74%), Gaps = 11/622 (1%)

Query  21   SILPLVGAQRGVIGWMNMARTAAYGQCFFLTVA--FTCLAISFINNDFSVAYVVNNSNSA  78
            S+ PL G  RG      MA ++ ++  +F+ VA  F  L  +F+ NDF+VAYV  NSN+ 
Sbjct  21   SVYPLWGVARGDA--RMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQ  78

Query  79   LPMAYRFAAIWGSHEgslllwslilglwMVAVALFSRSIPLAYIARVLAVMGMINVGFLL  138
            LP+ YR AA WG+HEGSLLLW L+++ W +AVA+FSR +P   +ARVLAVMGM+  GFL 
Sbjct  79   LPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLA  138

Query  139  FMILTSNPFLRHFPA-PLDGQDLNPLLQDPGLVIHPPMLYMGYVGFSVAFSFAIAALIGK  197
            F+++TS PF R +PA P++G+DLNPLLQDPGL++HPP+LYMGYVGFSVAF+FAIAAL++ 
Sbjct  139  FILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSG  198

Query  198  RLDAAWARWSRPWTVVAWLFLSIGITLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTA  257
            RLD+A +R +RPWT+ AW+FL++GI LGS WAYYELGWGGWWFWDPVENASFMPWL GTA
Sbjct  199  RLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTA  258

Query  258  LIHSLAVTEKRDAFKRWTVllaifafslsllGTFLVRSGVLTSVHAFATDPTRGVFILIL  317
            L+HS+AVTE+R +FK WT+LL+I AFSL LLGTFLVRSGVL SVHAFA+DP+RG+FIL +
Sbjct  259  LLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAF  318

Query  318  LGIAVGGSLLLYAMRAPLVKDTGRFHLLSREGFLLANNVVLIVAAGSVLLGTLYPLVLEG  377
            + +  GGSLLL+A+R+  V+      L SRE++LL+NNV+L+ A   VLLGTL PLV   
Sbjct  319  MVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQ  378

Query  378  LGLGKISVGPPYFDTVFVPLMVILAFLLGAGPIARWRQQSLGELIKRLGFIFAISLTIGI  437
            LGLG ISVG P+F+T+F  LMV +A+LLG GP+ RW ++   ++ K L      +L +++
Sbjct  379  LGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSV  438

Query  438  LVPYAVDKGEILSVAAGLTVAIWIALSTllglwnrlrnrggVAGVSSLSRSFMGMSLAHL  497
            L+P  ++   I   A G+++A WIA+ +             V+  +  S S+ GM  AHL
Sbjct  439  LLPWLLEDKIIAMTAVGMAMACWIAVLA------VAEAVQRVSRGTKTSLSYWGMVAAHL  492

Query  498  GFAVSIVGVTLTTMYGQDRDVGVAIGEAAELGAYEFRLDDIREVNGPNYRALEGTVSVLK  557
            G+AV+I G++++  Y+ +RDV +  G++  +  Y F + ++R++ GPNYR+  + ++V +
Sbjct  493  GLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTR  552

Query  558  GGELITTLQTQKRIYRVQTSPMTEAGIDAGLFRDLFVALGDSLGNNTWSLRIQFKPFVRW  617
             GE  + L+++KR+Y      MTEA+ID+GL RDL+ ALG+ L+N +W++R+ +KPFVRW
Sbjct  553  HGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRW  612

Query  618  IWlggllmalggavavSDRRYR  639
            IW GGLLMALGG + ++D RYR
Sbjct  613  IWAGGLLMALGGLLCLADPRYR  634

351) ccmF in NC_007973


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  444 bits (1672),  Expect = 1e-125, Method: Compositional matrix adjust.
 Identities = 336/609 (56%), Positives = 452/609 (75%), Gaps = 15/609 (2%)

Query  47   FLLVMVGFAALTWAFVAKDYSVAYVAQNSNSQLPLGYRMAAVWGGHEGSLLLWLLMQTGW  106
            F+ V  +F  L  AFV +D++VAYVA NSN+QLP+ YR+AA WG+HEGSLLLW+L+ +GW
Sbjct  47   FICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGW  106

Query  107  AYAVSRLSKQLPDAMVARVLGVLGLVTAGFLLFVLLTSNPFERLFPV-PQDGWDLNPLLQ  165
            + AV+ +S+Q+P  +VARVL+V+G+V AGFL F+L+TS PF R +P  P +G+DLNPLLQ
Sbjct  107  TLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQ  166

Query  166  DIGLIFHPPLLYMGYVGFSVafafaiaallaGQLDSTWARWSRPWATAAWANLTVGIALG  225
            D GLIFHPPLLYMGYVGFSVAFAFAIAALL+G+LDS+ +R +RPW+ AAW  LT+GI LG
Sbjct  167  DPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLG  226

Query  226  SWWAYYELGWGGWWFWDPVENSSFIPWLVGTALIHSLAVTEKRASFKNWTVLLSIGAFSC  285
            S WAYYELGWGGWWFWDPVEN+SF+PWL GTAL+HS+AVTE+RA+FK WT+LLSI AFS 
Sbjct  227  SAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSL  286

Query  286  SLLGAFLVRSGVLTSVHAFATDPRRGLFILILLTVIVGTSLALFAWRAPKVGMGGRFDMV  345
             LLG+FLVRSGVL SVHAFA+DP RG+FIL ++ ++ G SL LFA R+ +V       + 
Sbjct  287  CLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALW  346

Query  346  SRESlllvnnvllvvtagavalgtlYPLLVDALGLGKLSVGPPYFNAVFVPLMIPALLLI  405
            SRESLLL NNVLL+ +   V LGTL PL+   LGLG +SVG P+FN++F  LM+P  LL+
Sbjct  347  SRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLL  406

Query  406  AVGPAANWKAAQFGAIFRQLRVPMIAAPLVGLTAPFVLGHWSAS-AALGLMLATWIAVSV  464
            +VGP   W   +   I + L+ +++++ ++++  P +L +   + +A+G+ +A WIAV  
Sbjct  407  GVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLA  466

Query  465  VTGIFGRM-RATRGGLRAQPRSWLGMHMAHLGIAVFVTGVTIVSGYETERDVRLAQGESV  523
            V+    R+ R+T+ +L      W GM  AHLG+AV +TG+++   Y  ERDVR+  G+SV
Sbjct  467  VAEAVQRVSRGTKTSL----SYW-GMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSV  521

Query  524  SIGGYDLTLIGVRSTRGPNYVAQIGDIELSRDGKVLRRLHPEKRNYPASQMPMTEVAIDA  583
            +I +Y +T+  VR   GPNY + ++ I ++R+G     LH+EKR Y +S+M MTE AID+
Sbjct  522  TIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDG  581

Query  584  NGLRHVYAALGEPLGDGVWSVRVYHKPFVDWIWIGCILMALGGGLAISDRRYRLKPRRQH  643
               R++YAALGE L++G W+VR+Y KPFV WIW G +LMALGG L ++D RYR   RR+ 
Sbjct  582  GLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR---RRK-  637

Query  644  VAPPLPEAA  652
               PLPEA+
Sbjct  638  ---PLPEAG  643

352) Ping_3019 in NC_008709


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  444 bits (1673),  Expect = 8e-126, Method: Compositional matrix adjust.
 Identities = 372/650 (58%), Positives = 509/650 (79%), Gaps = 8/650 (1%)

Query  1    MLPEIGQVVLAIACMFSLLQVVYPLYGIYAHQQSAIESAKILTVLQFVFVALSFIILAYL  60
            M+PE G+ +L +A   +LL  VYPL G+   +   + SA +++ L F+ VA +F++L   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FLVNDFTVAYIATNSNSAMPWYYRLSAVWGAHEGslllwvlllsmwsmAVALMSKRLPVE  120
            F+VNDFTVAY+A NSN+ +P  YR++A WGAHEGSLLLWVLL+S W++AVA+ S+++P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  svarvlavlgllslgfylfvllTSNPFDRTLPYFPVDGRDLNPLLQDIGLIFHPPMLYMG  180
             VARVLAV+G++  GF  F+L+TS PF RTLP FPV+GRDLNPLLQD GLIFHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFSVAFAFAIAALMEGRLDSAWAKWSRPWTIAAWTFLTLGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIAAL+ GRLDSA ++ +RPWT+AAW FLTLGI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALIHSLAVSEKRGVFKSWTVllaisafslsllGTFLVRSGVLV  300
            FWDPVENASFMPWLAGTAL+HS+AV+E+R+ FK+WT+LL+I AFSL LLGTFLVRSGVLV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPTRGLFILTYLILVIGGSLLLYAVQASKVKSRGRYSIISRETMllsnnilli  360
            SVHAFASDP+RG+FIL++++LV GGSLLL+AV++ +V+SR   ++ SRE++LL+NN+LL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  aalivvllgtllplvHKEMGLGSISIGEPFFNRIFTVLIVPFALFLGVGSLVRWQRQNLT  420
            AA++VVLLGTLLPLVHK++GLGSIS+GEPFFN +FT L+VPFAL+LGVG+LVRW R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  DLFKPMVIllvvstlltlvflgtlASHFTWLAVLGIFLAMWILTGTCVEIYLRSTHRFSL  480
            ++ K +   +V + +L++++   L   +  ++ +G+ +A WI   +  E   R ++    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG---  477

Query  481  WTGMRKLGNSHWAMTLGHAGFAIMLIGITMTQNFSIERDVKLSVGESVRFEHYDFHFDAV  540
                 K + S W+M  +H G+A+ + GI+ +QN+S+ERDV++  G+SV +++Y F F  V
Sbjct  478  ----TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  NDLQGKNYGGIVGKFTVKYDQKTVAVMEPEKRIYNVQRTAMTEAAIDSGFTRDLYIAMGE  600
             D+ G NY G V+ + V  +    AV+++EKR+YN  R  MTEAAID+G+TRDLY A+GE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  VLPDGAWSVRVYYKSFIRWIWFGPMMMALAGVLVIFDRRYRVKK-VPESA  649
             L +GAW+VR+YYK+F+RWIW G ++MAL+G+L + D RYR +K +PE++
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

353) ccmF in NC_007645


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  444 bits (1673),  Expect = 9e-126, Method: Compositional matrix adjust.
 Identities = 345/645 (54%), Positives = 470/645 (73%), Gaps = 12/645 (1%)

Query  1    MIAELGHFALILSFCFAILLAVTPI-AGAWIGDRLWMRLSRPLAGAQFLMATVAFAALTT  59
            M++E GH  L L++  A+LL+V P+ + A+ + R+ M  +  +A   F+  + AF  L  
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARM-MASAGVFAWLLFICVAGAFFVLVH  59

Query  60   SFLQDDFSVRYVAGHSNSLLPWYYKFSAVWGGHEGSLLLWALILTGWTAAVAKFSKQLPL  119
            +F+ +DF+V YVAG+SN+ LP  Y+ +A WG+HEGSLLLW L+++GWT AVA FS+Q+P 
Sbjct  60   AFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPA  119

Query  120  EMVARVLGVMGMISIGFMLFILLTSNPFLRYLPNSPQDGADLNPLLQDFGLIVHPPMLYM  179
            ++VARVL+VMGM+  GF+ FIL+TS PF R LP  P +G DLNPLLQD GLI HPP+LYM
Sbjct  120  DIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYM  179

Query  180  GYVGFSvafafavaaLMGGRLDAAWARWSRPWTTVAWAFLTLGIALGSWWAYYELGWGGW  239
            GYVGFSVAFAFA+AAL++GRLD+A +R +RPWT  AW FLTLGI LGS WAYYELGWGGW
Sbjct  180  GYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGW  239

Query  240  WFWDPVENASFMPWLAGTALMHSLAATEKRGVFKSWTVllaifafslsllGTFLVRSGIL  299
            WFWDPVENASFMPWLAGTAL+HS+A TE+R+ FK+WT+LL+I AFSL LLGTFLVRSG+L
Sbjct  240  WFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVL  299

Query  300  TSVHAFASDPERGRFVLMMLGVVIGGSLLLYALRAPVVKSRIGFSETSREVFllvnniil  359
             SVHAFASDP RG F+L  + +V GGSLLL+A+R+  V+SR+  +  SRE +LL NN++L
Sbjct  300  VSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLL  359

Query  360  vvAMLTVLIGTLAPLVAEWMD-KEISVGAPYFNLMFSLLAPLLVIVMGIGMYSHWKDTKA  418
            + AML VL+GTL PLV   ++   ISVG P+FN MF+ L   + +++G+G   +W   ++
Sbjct  360  MAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRP  419

Query  419  AQLLGPVPMLLSVSAVLSVAIPWMYGE-ILLMAVIGVFIAVWLFAATLRDAWLKSASSQG  477
             ++   +   +  + VLSV +PW+  + I+ M+ +G+ +A W+         L  A +  
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAV-------LAVAEAVQ  472

Query  478  RVRGWLRTSRSYKGMVLGHLGLAVTIVGATMVSQYTLERDVRLAPGQSVELAGFTFRFDE  537
            RV    +TS SY GMV +HLGLAVTI G +   +Y++ERDVR+ +G+SV + ++ F F E
Sbjct  473  RVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  538  ETQRRGPNFIGDRATISILDSDGEVLHVLHPEKRRYQVSGNVMTEAGIDPGLFRDLYVSL  597
              +  GPN+ G+ A I++   +GE   VLH+EKR Y+ S  VMTEA+ID GL RDLY +L
Sbjct  533  VRDITGPNYRGGVALIGV-TRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAAL  591

Query  598  GESLDDESWTMRVQYKPFVRWLWLGGVFMAWGGFLAVADRRYRIK  642
            GE LD+ +W++R+ YKPFVRW+W GG++MA GG+L +AD RYR +
Sbjct  592  GEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

354) swp_2046 in NC_011566


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  443 bits (1669),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 325/648 (51%), Positives = 469/648 (73%), Gaps = 23/648 (3%)

Query  1    MIPELGHFSLIIGVAFAMLLAIVPLVGVARKDQYLVRYAWPLTYGMFFFILFSVVA----  56
            M+PE GH  L ++++ A+LL++ PL GVAR D  ++  A     G+F  +LF  VA    
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASA-----GVFAWLLFICVAGAFF  55

Query  57   -LGYSFAVDDFSVAYVAHHSNSELPIFFKIAAVWGGHEGSLLFWVFSLSAWAAAVALFSK  115
             L  +F V+DF+VAYVA +SN++LP+ +++AA WG+HEGSLL+WV+ +S+W+ AVA+FS+
Sbjct  56   VLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR  115

Query  116  GLEEVFTARVLAVLAMILIGFSLFMLLTSSPFERLFPI-PMEGRDLNPMLQDVGLIFHPP  174
             +   + ARVLAV++M+  GF  F+L+TS+PF R +P  P+EGRDLNP+LQD GLIFHPP
Sbjct  116  QVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPP  175

Query  175  MLYLGYVGFSVSFAFAIAALMSGRLDSAWARWSRPWTLAAWVFLTGGIALGSWWAYYELG  234
            +LY+GYVGFSV+FAFAIAAL+SGRLDSA +R +RPWTLAAWVFLT GI LGS WAYYELG
Sbjct  176  LLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELG  235

Query  235  WGGWWFWDPVENASFMPWLIGTALVHSLIVTEKRGAFRNWTVllsifafslsllGTFIVR  294
            WGGWWFWDPVENASFMPWL GTAL+HS+ VTE+R++F+ WT+LLSI AFSL LLGTF+VR
Sbjct  236  WGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVR  295

Query  295  SGVLTSVHSFAADPSRGMFIllllglavggsltlFAFRASEMKSPARFQLKSKETMLLVC  354
            SGVL SVH+FA+DP+RGMFIL ++ L  GGSL LFA R+  ++S     L S+E++LL  
Sbjct  296  SGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGN  355

Query  355  NLLLTVACGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFGFMGIGPVIRWK  414
            N+LL  A   VLLGTL PL+   LG+G ISVG P+FN++F  +++ +  ++G+GP++RW 
Sbjct  356  NVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWG  415

Query  415  KSKDGELKRQLLIPAVIASVVGLAAPFLAGGEFNIWVAFGIGTATWVTIMTFRAAYNMVK  474
            + +  ++++ L  + V + V+++  P L  + +    A G++ A W+++++         
Sbjct  416  RDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLA---------  466

Query  475  TKEGPVDMTRLGRSQL---GMIIAHLGIAVSVVGATMVSNYSLEKSVRMGPGVSQELAGY  531
              E+   ++R  ++ L   GM+ AHLG+AV++ G +   NYS+E+ VRM +G S  + +Y
Sbjct  467  VAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  532  TFKYVETKNVVGPNYTAQQGQIEVYQDDEYVTLLRPDRRQYNVRTMDMTEAGIDWGLFRD  591
             F + E +++ GPNY +  + I V +++E  ++L++++R YN   M MTEA+ID GL RD
Sbjct  527  RFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  592  LYVTMGDPISRTEFAVRLNYKPFVRWLWFGSIFMMVGGFFAASDKRYR  639
            LY ++G+ +     AVRL YKPFVRW+W G+++M +GG++  +D RYR
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

355) Shal_4101 in NC_010334


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  443 bits (1669),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 322/650 (50%), Positives = 470/650 (73%), Gaps = 23/650 (3%)

Query  1    MIPELGHFSLIIGLAFAMLLAIVPLVGVARKDQYLVRYAWPLSYGMFFFILFSVIA----  56
            M+PE GH  L ++L+ A+LL++ PL GVAR D  ++  A     G+F  +LF  +A    
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASA-----GVFAWLLFICVAGAFF  55

Query  57   -LGYSFAVDDFSIAYVAHHSNSELPIFFKIAAVWGGHEGSLLFWVFSLSAWAAAVALFSK  115
             L  +F V+DF++AYVA +SN++LP+ +++AA WG+HEGSLL+WV+ +S+W+ AVA+FS+
Sbjct  56   VLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR  115

Query  116  GLEEVFTARVLSVLAMILIGFTLFMLLTSSPFERLFPV-PMEGRDLNPMLQDVGLIFHPP  174
             +   + ARVL+V++M+  GF  F+L+TS+PF R +P  P+EGRDLNP+LQD GLIFHPP
Sbjct  116  QVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPP  175

Query  175  MLYLGYVGFAVSFAFAIAALMSGSLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELG  234
            +LY+GYVGF+V+FAFAIAAL+SG LDSA +R +RPWTLAAWVFLT GI LGS WAYYELG
Sbjct  176  LLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELG  235

Query  235  WGGWWFWDPVENASFMPWLIGTALLHSVIVTEKRGAFRNWTVllsifafslsllGTFIVR  294
            WGGWWFWDPVENASFMPWL GTALLHS+ VTE+R++F+ WT+LLSI AFSL LLGTF+VR
Sbjct  236  WGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVR  295

Query  295  SGVLTSVHSFAADPSRGMFIllllglavggsltlFAFRASEMRSPARFELKSKETMILIC  354
            SGVL SVH+FA+DP+RGMFIL ++ L  GGSL LFA R+  +RS     L S+E+++L  
Sbjct  296  SGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGN  355

Query  355  NLLLTVACGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFGFMGVGPVIRWK  414
            N+LL  A   VLLGTL PL+   LG+G ISVG P+FN++F  +++ +  ++GVGP++RW 
Sbjct  356  NVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWG  415

Query  415  KSKAGELKRQLIVPAVISAVVGLAAPFLADGQFNIWVVFGIGMAVWVALMTFRAAYNMVK  474
            + ++ ++++ L  + V + V+++  P L ++++      G++MA W+A+++         
Sbjct  416  RDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLA---------  466

Query  475  TKDGSIDLTRLGRSQL---GMIIAHLGIAVSVVGATMVSNYSLEKSVRMGPGISQELAGY  531
              ++   ++R  ++ L   GM+ AHLG+AV++ G +   NYS+E+ VRM +G S  + +Y
Sbjct  467  VAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  532  TFNYVETKNVVGPNYTAQQGQIEVYEGDDYVTLLRPDRRQYNVRTMDMTEAGIDWGLFRD  591
             F + E +++ GPNY +  + I V   ++  ++L++++R YN   M MTEA+ID GL RD
Sbjct  527  RFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  592  LYVTMGDPISRTEYAVRINYKPYVRWIWFGSIFMMVGGFFAASDKRYRVR  641
            LY ++G+ +     AVR+ YKP+VRWIW G+++M +GG++  +D RYR R
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

356) ccmF in NC_012997


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  442 bits (1663),  Expect = 5e-125, Method: Compositional matrix adjust.
 Identities = 318/587 (55%), Positives = 445/587 (76%), Gaps = 7/587 (1%)

Query  63   TDDFSVAYVARQSNLVLPVQYKLSAVWGGHEGSLLLWVFILASWTLAVSVFSRRLPIDVL  122
             +DF+VAYVA +SN  LPV Y+++A WG+HEGSLLLWV+++++WTLAV+VFSR++P D++
Sbjct  63   VNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIV  122

Query  123  ARVLSVMGMIAVGFLLFTIATSNPFERILPNIPSDGSDLNPLLQDPGLIIHPPMLYMGYV  182
            ARVL+VMGM+  GFL F + TS PF R LP +P +G DLNPLLQDPGLI+HPP+LYMGYV
Sbjct  123  ARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYV  182

Query  183  GFSVVFAFAIAALLSGRMDAAWARWSRPWTNAAWCFLSLGIALGSWWAYYELGWGGWWFW  242
            GFSV FAFAIAALLSGR+D+A +R +RPWT AAW FL+LGI LGS WAYYELGWGGWWFW
Sbjct  183  GFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFW  242

Query  243  DPVENASLLPWLVGTALIHSLAMTEKRGVYKNWTlllaifsfslsllgtflVRSGVITSV  302
            DPVENAS++PWL GTAL+HS+A+TE+R+ +K WTLLL+I +FSL LLGTFLVRSGV+ SV
Sbjct  243  DPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSV  302

Query  303  HAFASDPTRGVFILAFLGIVVGGSLTLFAVRAQVVKSISGFDFLSREAFLLANTilffia  362
            HAFASDP+RG+FILAF+ +V GGSL LFAVR++ V+S     + SRE++LL+N +L+  A
Sbjct  303  HAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAA  362

Query  363  alfvllGTVYPIISDALNLGKISVGEPWFNFFFVKLMAVVAALLGIGIMLNWKKTDYGKI  422
             L VLLGT+ P++   L LG ISVGEP FN  F  LM   A LLG+G ++ W +    +I
Sbjct  363  MLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNI  422

Query  423  RPWQTVPIIGALWLGSFIPGVIEGDYSIAAAISITLGSWVIFASLADLKRKIRHAPRFTA  482
            R     +++ +L L+ ++P ++E+     +A++++++ W+   ++A+  +++ ++     
Sbjct  423  RKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG-----  477

Query  483  GLSKLSPSYYGMLIAHIGFAFSLMGASLNTIYSDQRDVRIAIGDSVFAAGYEYELLDVTR  542
              +K S SY GM+ AH+G+A ++ G +++  YS +RDVR+  GDSV   +Y + + +V  
Sbjct  478  --TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRD  535

Query  543  VKGANYFADVGEIIVRKHGKEVSRLRPEKRRYFSGGNVMTEADIDAGFTRDIYVALGEQL  602
            + G+NY ++V+ I V +HG   + L++EKR Y ++  VMTEA ID+G+TRD+Y ALGE+L
Sbjct  536  ITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEEL  595

Query  603  DNTDWAIRIHFKPVVRWIWlgailmalgggiamaDKRYRARQSVREQ  649
            DN  WA+R+ +KP VRWIW G++LMALGG + +AD RYR R+++ E 
Sbjct  596  DNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEA  642

357) PT7_1838 in NC_015458


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  441 bits (1662),  Expect = 6e-125, Method: Compositional matrix adjust.
 Identities = 318/571 (56%), Positives = 422/571 (74%), Gaps = 4/571 (0%)

Query  47   FLLIIVSFATLGWSFIVKDFSVAYVAQNSNSQLPLLYRIAAVWGGHEGSLLLWLLMQTGW  106
            F+ +  +F  L  +F+V+DF+VAYVA NSN+QLP+ YR+AA WG+HEGSLLLW+L+ +GW
Sbjct  47   FICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGW  106

Query  107  AYAVSVFSKQLPDVMVARVLGVLGLVTAGFLLFVLLTSNPFERLVPA-AIEGMDLNPLLQ  165
            + AV+VFS+Q+P  +VARVL+V+G+V AGFL F+L+TS PF R +PA ++EG DLNPLLQ
Sbjct  107  TLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQ  166

Query  166  DIGLIFHPPLLYMGYVGFSVafafaiaallaGQLDSTWARWSRPWATAAWLFLTLGIALG  225
            D GLIFHPPLLYMGYVGFSVAFAFAIAALL+G+LDS+ +R +RPW+ AAW+FLTLGI LG
Sbjct  167  DPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLG  226

Query  226  SWWAYYELGWGGWWFWDPVENSSFIPWLVGTALIHSLAVTEKRASFKNWTVLLAISTFSL  285
            S WAYYELGWGGWWFWDPVEN+SF+PWL GTAL+HS+AVTE+RA+FK WT+LL+I +FSL
Sbjct  227  SAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSL  286

Query  286  SLLGAFLVRSGVLTSVHAFATDPRRGVFILMLFAVVVGSSLFLFALRAPKVGMGGRFELI  345
             LLG+FLVRSGVL SVHAFA+DP RG+FIL +  +V G+SL+LFA+R+ +V       L 
Sbjct  287  CLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALW  346

Query  346  SRESlllmnnvllavaagavilgtlYPLFIDALGLGKLSVGPPYFNAVFIPLMVPALLLM  405
            SRESLLL NNVLL  A   V+LGTL PL    LGLG +SVG P+FN++F  LMVP  LL+
Sbjct  347  SRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLL  406

Query  406  AVGPVANWKSAKISALIKhlhvpavvalvvgvgapFMLGRWSalaalglalatwiataVV  465
            +VGP+  W   +   + K L  + V +LV++V  P +L     + A+     +      V
Sbjct  407  GVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLE--DKIIAMTAVGMAMACWIAV  464

Query  466  KGIFDRMRATRTGLRAQPLSWLGMHLAHLGIAVFVAGVTLVMGYETEQDVRMTPGSTVST  525
             ++ + ++    G ++    W GM  AHLG+AV ++G+++   Y  E+DVRM +G +V+ 
Sbjct  465  LAVAEAVQRVSRGTKTSLSYW-GMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTI  523

Query  526  GGYELKFLGVNKAQGPNYVAEVGDIELSRDGRILRLLHPEKRSYISSEMPMTEAAIDANG  585
             +Y + F  V    GPNY + V+ I ++R+G    +LH+EKR Y +S M MTEAAID+  
Sbjct  524  HDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGL  583

Query  586  LRHVYVALGEPLADGAWSVRVYYKPFVDWIW  616
             R++Y ALGE L +GAW+VR+YYKPFV WIW
Sbjct  584  TRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

358) ccmF in NC_021499


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  440 bits (1658),  Expect = 1e-124, Method: Compositional matrix adjust.
 Identities = 368/642 (58%), Positives = 481/642 (75%), Gaps = 7/642 (1%)

Query  1    MIPELGHLALILALCMALVQATLPLIGAWRGDRQWMSLAQPAAWGQFAFLAFAFGCLTYA  60
            M+PE GH  L LAL +AL+ +  PL G  RGD + M+ A   AW  F  +A AF  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FMVDDFsvayvasnsnsaLPWYYKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPEV  120
            F+V+DF+VAYVA+NSN+ LP  Y+ +A WGAHEGSLLLW L+++GWT+AV+VFSRQ+P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MLARVLAVMGMISIGFLLFLIVTSNPFNRLLPNMPSDGNDLNPLLQDFGLIVHPPMLYMG  180
            ++ARVLAVMGM+  GFL F++ TS PF R LP  P +G DLNPLLQD GLI HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVgfsvafafaiaallggrlDAAWARWSRPWTIIAWAFLTVGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIAALL+GRLD+A +R +RPWT+ AW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLT  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPERGVFILAFLLMVVGGSLALFAVRAPVVKSQVGFALWSRETlllvnnlilv  360
            SVHAFASDP RG+FILAF+++V GGSL LFAVR+  V+S+V  ALWSRE+LLL NN++L+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  vAASMILLGTLYPLVLDALSGAKLSVGPPYFNALFVPLMGILMLALAVGVLVRWKDTPVK  420
             A  ++LLGTL PLV   L+ + +SVG P+FN++F  LM  + L L+VG LVRW     +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  WLLGMLAPvligslllgvlaavlYGDFHWAVLAVGF-LAAWVVLAGLRDLLDKTRHKGLY  479
             +  +L + ++ +L+L+VL + L  D   A+ AVG  +A W+ + ++ + +++       
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  480  KGARGLSSSYWGMQLAHAGIALCALGVVLSSQYSAERDLRLAPGESVELGGYRFLFEGAA  539
            +G++  S SYWGM  AH G+A+   G+ +S +YS ERD+R+ +G+SV + +YRF F    
Sbjct  476  RGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  540  HHEGPNFTSDKGTVVVFDGDKQISVLHPEKRLYTVQQSVMTEAGIDAGFTRDLYVALGEP  599
            +  GPN+ ++ + + V   +   +VLH+EKRLY   + VMTEA+ID+G+TRDLY ALGE 
Sbjct  535  DITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  600  LDQGAWAVRVHVKPFVRWIWlggllmglggvlAAFDPRYRVK  641
            LD+GAWAVR+  KPFVRWIW GGLLM+LGG+L   DPRYR +
Sbjct  595  LDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

359) Pfl01_1582 in NC_007492


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  440 bits (1658),  Expect = 1e-124, Method: Compositional matrix adjust.
 Identities = 338/619 (55%), Positives = 458/619 (74%), Gaps = 7/619 (1%)

Query  7    IPELGHLAMILALCFALVQAVVPLLGAWRGDRLWMGLAQPAAWGQFAFLLFAFGCLTYAF  66
            +PE GH  + LAL  AL+ +V PL G  RGD   M+ A   AW  F  +  AF  L  AF
Sbjct  2    MPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAF  61

Query  67   MTDDFSVAYVAMNSNSALPWYYKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQVM  126
            + +DF+VAYVA NSN+ LP  Y+ +A WGAHEGSLLLW L+++GWT+AV+VFSRQ+P  +
Sbjct  62   VVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADI  121

Query  127  LARVLAVMGMISTGFLLFLILTSNPFSRILPQIPADGRDLNPLLQDIGLIVHPPMLYMGY  186
            +ARVLAVMGM+ +GFL F+++TS PF+R LP +P +GRDLNPLLQD GLI HPP+LYMGY
Sbjct  122  VARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGY  181

Query  187  VgfsvafafaiaallggrlDAAWARWSRPWTIVAWAFLGIGITLGSWWAYYELGWGGWWF  246
            VGFSVAFAFAIAALL+GRLD+A +R +RPWT+ AW FL +GI LGS WAYYELGWGGWWF
Sbjct  182  VGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWF  241

Query  247  WDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLTS  306
            WDPVENASFMPWL GTAL+HS+AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL S
Sbjct  242  WDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVS  301

Query  307  VHAFASDPERGVFILIFLLFVVGGSLTLFALRAPVVKSQVGFNLWSRETlllgnnlvlvv  366
            VHAFASDP RG+FIL F+++V GGSL LFA+R+  V+S+V   LWSRE+LLLGNN++L+ 
Sbjct  302  VHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMA  361

Query  367  AASMILLGTLYPLILDAISGAKLSVGPPYFNALFIPlmallmlvmavGVIVRWKDTPVKW  426
            A  ++LLGTL PL+   ++ + +SVG P+FN++F  LM  + L+++VG +VRW     + 
Sbjct  362  AMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRN  421

Query  427  LVSML-TPvllgsvalavvagvaygDFNWAVIATFLLAAWVLLAGVRDIFDKTRHKGLIK  485
            +  +L ++V+   V   +++ +  + +         +A W+ + +V +  ++   +G   
Sbjct  422  IRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV-SRGTKT  480

Query  486  GLPTLTRSYWGMQIAHLGIAVCALGVVLSSQNSAERDLRLAPGESMDLAGYQFVFEGAKH  545
            +L     SYWGM  AHLG+AV   G+ +S + S ERD+R+ +G+S+ + +Y+F F   ++
Sbjct  481  SL-----SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRD  535

Query  546  FEGPNFTSDKGTVRVIRNGQEVSVLHPEKRLYTVQNSVMTEAGIDAGFTRDLYVALGEPL  605
            + GPN+ ++ + + V R+G+  +VLH+EKRLY     VMTEA+ID+G+TRDLY ALGE L
Sbjct  536  ITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEEL  595

Query  606  GDGAWAVRVHVKPFVRWIW  624
            ++GAWAVR+  KPFVRWIW
Sbjct  596  DNGAWAVRLYYKPFVRWIW  614

360) MDS_1887 in NC_015410


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  439 bits (1655),  Expect = 2e-124, Method: Compositional matrix adjust.
 Identities = 357/642 (56%), Positives = 474/642 (74%), Gaps = 7/642 (1%)

Query  1    MIPELGHLAMILALCLCLVQATLPLIGAWRGDHQWMSLAQPAAWGQFAFLLFSFLCLTYA  60
            M+PE GH  + LAL + L+ +  PL G  RGD + M+ A   AW  F  +  +F+ L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FMVDDFSVAYVANNSNSALPWYYKFSAVWGAHEGSLLLWALILAGWTFAVAIFSRHLPEE  120
            F+V+DF+VAYVA NSN+ LP  Y+ +A WGAHEGSLLLW L+++GWT+AVA+FSR++P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MLARVLAVMGMISVGFLLFLIVTSNPFERLLPNSPVDGRDLNPLLQDFGLIVHPPMLYMG  180
            ++ARVLAVMGM+  GFL F++ TS PF R LP  PV+GRDLNPLLQD GLI HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVgfsvafafaiaallggklDAAWARWSRPWTIVAWAFLGIGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIAALL+G+LD+A +R +RPWT+ AW FL +GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLT  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFATDPERGVFILAFLLVVVGGSLTLFAVRAPVVRSQVGFGLWSRETlllvnnivlv  360
            SVHAFA+DP RG+FILAF+++V GGSL LFAVR+  VRS+V  +LWSRE+LLL NN++L+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  vSAAMILLGTLYPLVLDALTGAKLSVGPPYFNalflplmallmaVISVGVLVRWKDTPLK  420
             +  ++LLGTL PLV   L  + +SVG P+FN++F  LM  +  +++VG LVRW     +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  WLGSMLTPvlvasvvlavaaTYLHGDFHWAVLAVCL-LAFWVVLGGVRDILDKTRHKGLI  479
             +  +L + +V+++VL+V    L  D   A+ AV + +A W+ + +V + +++   +G  
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-RGTK  479

Query  480  KGLPSLTRSYWGMQMAHLGFAVCALGVVLTSLGSYERDLRMAPGESVELAGYRFQFDGAV  539
             +L     SYWGM  AHLG+AV   G+ ++   S ERD+RM +G+SV + +YRF F    
Sbjct  480  TSL-----SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  540  HHEGPNFISDKGTVRVFDGERQIKVLHPEKRLYTVQQSTMTEAGIDAGFTRDLFVALGEP  599
            +  GPN+ ++ + + V        VLH+EKRLY   +  MTEA+ID+G+TRDL+ ALGE 
Sbjct  535  DITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  600  LEQGAWAVRIHIKPFVRWIWlggllmafggflaaaDKRYRIK  641
            L++GAWAVR+  KPFVRWIW GGLLMA+GG+L  AD RYR +
Sbjct  595  LDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

361) ccmF in NC_017911


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  439 bits (1655),  Expect = 2e-124, Method: Compositional matrix adjust.
 Identities = 340/619 (55%), Positives = 459/619 (75%), Gaps = 7/619 (1%)

Query  7    IPELGQLAMILALCFAVVQAVVPLLGAWRGDRLWMSLAQPAAWGQFAFLLFAFGCLTYAF  66
            +PE G+  + LAL  A++ +V PL G  RGD   M+ A   AW  F  +  AF  L  AF
Sbjct  2    MPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAF  61

Query  67   MTDDFSVAYVANNSNSALPWYYKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQVM  126
            + +DF+VAYVA NSN+ LP  Y+ +A WGAHEGSLLLW L+++GWT+AV+VFSRQ+P  +
Sbjct  62   VVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADI  121

Query  127  LARVLAVMGMISIGFLLFLIMTSNPFTRILPQIPVDGHDLNPLLQDIGLIVHPPMLYMGY  186
            +ARVLAVMGM+  GFL F++ TS PF+R LP +PV+G+DLNPLLQD GLI HPP+LYMGY
Sbjct  122  VARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGY  181

Query  187  VgfsvafafaiaallggrlDAAWARWSRPWTIVAWAFLGIGITLGSWWAYYELGWGGWWF  246
            VGFSVAFAFAIAALL+GRLD+A +R +RPWT+ AW FL +GI LGS WAYYELGWGGWWF
Sbjct  182  VGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWF  241

Query  247  WDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLTS  306
            WDPVENASFMPWL GTAL+HS+AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL S
Sbjct  242  WDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVS  301

Query  307  VHAFASDPERGVFILIFLLFVVGGSLTLFALRAPVVKSHVGFNLWSRETlllgnnlvlvv  366
            VHAFASDP RG+FIL F+++V GGSL LFA+R+  V+S+V   LWSRE+LLLGNN++L+ 
Sbjct  302  VHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMA  361

Query  367  AASMILLGTLYPLVLDALSGAKLSVGPPYFNALFIPlmgllmvvmavgvlvRWKDTPVKW  426
            A  ++LLGTL PLV   L+ + +SVG P+FN++F  LM  + ++++VG LVRW     + 
Sbjct  362  AMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRN  421

Query  427  LAGMLMPVLLGSVALAVIAGFAYGDFNWAVLATFL-LAAWVLLAGARDIVDKTRHKGLIK  485
            +  +L + ++ ++ L+V+      D   A+ A  + +A W+ + +  + V++   +G   
Sbjct  422  IRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV-SRGTKT  480

Query  486  GLPTLTRSYWGMQIAHIGIAVCALGVVLSSQNSAERDLRLAPGESMDLAGYHFIFEGAKH  545
            +L     SYWGM  AH+G+AV   G+ +S + S ERD+R+ +G+S+ + +Y+F F   ++
Sbjct  481  SL-----SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRD  535

Query  546  FEGPNFTSDKGTVRVVRNGKEIAVLHPEKRLYTVQSSMMTEAGIDAGFTRDLYVALGEPL  605
            + GPN+ ++ + + V R+G   AVLH+EKRLY     +MTEA+ID+G+TRDLY ALGE L
Sbjct  536  ITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEEL  595

Query  606  GDGAWAVRVHVKPFVRWIW  624
            ++GAWAVR+  KPFVRWIW
Sbjct  596  DNGAWAVRLYYKPFVRWIW  614

362) ccmF in NC_004578


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  439 bits (1653),  Expect = 3e-124, Method: Compositional matrix adjust.
 Identities = 344/620 (56%), Positives = 463/620 (75%), Gaps = 7/620 (1%)

Query  1    MIPELGHLAMILALGFALVQAIVPLIGAWRGDRLWMSLARPAAWGQFSFLIFAFGCLTYA  60
            M+PE GH  + LALG AL+ ++ PL G  RGD   M+ A   AW  F  +  AF  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FMTDDFSVTYVAQNSNTALPWYYKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQV  120
            F+ +DF+V+YVA NSNT LP  Y+ +A WGAHEGSLLLW L+++GWT+AV+VFSRQ+P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MLARVLAVMGMISLGFLLFLILTSNPFARLLPQMPANGRDLNPLLQDIGLIVHPPMLYMG  180
            ++ARVLAVMGM+  GFL F+++TS PFAR LP  P +GRDLNPLLQD GLI HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVgfsvafafaiaallggrlDAAWARWSRPWTLVAWAFLGIGISLGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIAALL+GRLD+A +R +RPWTL AW FL +GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLT  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGVFILMFLLVVVGGSLTLFAIRAPVVKSHVGFGLWSRETlllgnnlllV  360
            SVHAFASDPARG+FIL F+++V GGSL LFA+R+  V+S+V  +LWSRE+LLLGNN+LL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  VAASMILLGTLYPLVIDAISGDKMSVGPPYFNALFVPlmglllavmavgvlvRWKDTPLK  420
             A  ++LLGTL PLV   ++ + +SVG P+FN++F  LM  +  +++VG LVRW     +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  WLLGMLAPVLIGSAVLAVIAGLVMGDFQWAVLAIFM-LAAWVLLAGLRDLFDKTRHKGLL  479
             +  +L + ++ + VL+V+   ++ D   A+ A+ M +A W+ + ++ +  ++       
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  480  KGARSLTRSYWGMQLAHFGIVVCALGVVLSSQNSAERDLRMAPGESTELGGYVFVFEGAK  539
            +G+++ + SYWGM  AH+G+ V   G+ +S + S ERD+RM +G+S  + +Y F F   +
Sbjct  476  RGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  540  HYEGPNFTSDRGTVRVLRNGVQLTELHPEKRLYSVQQSMMTEAGIDAGFSRDLYVALGEP  599
            +  GPN+ ++ + + V R+G   + LH+EKRLY+  + +MTEA+ID+G++RDLY ALGE 
Sbjct  535  DITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  600  LGNGAWAVRVHVKPFVRWIW  619
            L+NGAWAVR+  KPFVRWIW
Sbjct  595  LDNGAWAVRLYYKPFVRWIW  614

363) Sden_3566 in NC_007954


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  438 bits (1649),  Expect = 6e-124, Method: Compositional matrix adjust.
 Identities = 315/606 (52%), Positives = 454/606 (75%), Gaps = 10/606 (1%)

Query  46   MFAFVSLSIISLGYSFAVDDFSVAYVAHHSNSQLPIFFKISAVWGGHEGSLLFWVFALSV  105
            +F  V+ +++ L  +F V+DF+VAYVA +SN+QLP+ ++++A WG+HEGSLL+WV+ +S 
Sbjct  46   LFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSG  105

Query  106  WSVAVALFSKQIEEVFTARVLSVLAIVIVGFTFFMLLTSNPFERLFPI-PMEGRDLNPML  164
            W++AVA+FS+Q+   + ARVL+V+++V  GF  F+L+TS PF R +P  P+EGRDLNP+L
Sbjct  106  WTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLL  165

Query  165  QDIGLIYHPPMLYIGYVGFAVSFAFAIAALMSGRLDSAWARWTRPWTLAAWVFLTGGIAL  224
            QD GLI+HPP+LY+GYVGF+V+FAFAIAAL+SGRLDSA +R +RPWTLAAWVFLT GI L
Sbjct  166  QDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVL  225

Query  225  GSWWAYYELGWGGWWFWDPVENASFMPWLVGTALVHSLIVTEKRSAFRNWTVllsisafs  284
            GS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS+ VTE+R++F+ WT+LLSI AFS
Sbjct  226  GSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFS  285

Query  285  lsllGTFIVRSGVLTSVHSFASDPSRGVFIllllaltvggsltlFAFRASDMASPARFEL  344
            L LLGTF+VRSGVL SVH+FASDP+RG+FIL ++ L  GGSL LFA R+  + S     L
Sbjct  286  LCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNAL  345

Query  345  KSKETMLLICNvllavatgtvllgtlYPLLIDALNMGKISVGPPYFNAVFVPLVLILFGF  404
             S+E++LL  NVLL  A   VLLGTL PL+   L +G ISVG P+FN++F  L++ +  +
Sbjct  346  WSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALL  405

Query  405  MGIGPIIRWKKSKAGELKRQLLLPAMIAVALGVTLPFIIAEGEFDIWVAFGLGMASWI-I  463
            +G+GP++RW + ++ ++++ L  + + ++ L+V LP ++ +  + +  A G++MA WI +
Sbjct  406  LGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAM-TAVGMAMACWIAV  464

Query  464  LATFRAGYNMARGSSSNIDLRRIGRSQWGMIIAHLGIAVSVIGATMVSNYSIEKSVRMGP  523
            LA   A   ++RG+ +++         WGM+ AHLG+AV++ G +   NYS+E+ VRM +
Sbjct  465  LAVAEAVQRVSRGTKTSLSY-------WGMVAAHLGLAVTITGIAFSQNYSVERDVRMRA  517

Query  524  GVSYELAGYQFKFIDTRHIVGPNYTAEQAQIEIYQQGEFVALVQPDRRQYNVRTMDMTEA  583
            G S  + +Y+F F + R+I GPNY +  A I + ++GE  A++++++R YN   M MTEA
Sbjct  518  GDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEA  577

Query  584  GIDWGLFRDLYVTMGDPISTTEFAVRLNYKPFVRWLWFGAIFMMVGGLLAASDKRYRRKV  643
            +ID GL RDLY ++G+ +     AVRL YKPFVRW+W G+++M +GGLL  +D RYRR+ 
Sbjct  578  AIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

Query  644  SVAQAD  649
            ++++A+
Sbjct  638  PLPEAG  643

364) ccmF in NC_018691


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  436 bits (1641),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 339/642 (53%), Positives = 465/642 (73%), Gaps = 8/642 (1%)

Query  1    MAAEIGHlslwvalaaslvlaIFPLIGVHRGVLAWQRYARPLAWLQWMAMTAAIVALGYS  60
            M +E GH  L +AL+ +L+L+++PL GV RG       A  +AWL  + +++A+  L  +
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FYINDFSITYVANHSNSELPLGYRLSAIWGGHEGSLLLWGWMLAGWTALVGLLSRSVPLP  120
            F +NDF+++YVA +SN++LP+ YR++A WG+HEGSLLLW  +++GWT  V+++SR VP  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MVVRVLSVMGMIAVGFLAFMLFTSNPFDRALPWFVIDGADLNPLLQDPGLIVHPPMLYMG  180
            +V RVL+VMGM+  GFLAF+LFTS PF R+LP F ++G DLNPLLQDPGLI HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YvgfavafgfavagLLEGNLDPAWARWARPWTTVAWCFLTVGIALGSWWAYYELGWGGWW  240
            YVGF+VAF+FA+A+LL G LD+A +R ARPWT  AW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLMPWLAGTALIHSLAVSEKRNLFRAWTVLLAIITFSLSLLGTFLVRSGVLT  300
            FWDPVENAS+MPWLAGTAL+HS+AV+E+R  F+AWT+LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFANDPSRGAFILAFLVVVAGGALTLFALRAGRLSGQGGFKAMSRESFLLGNNLVLL  360
            SVHAFA+DP+RG FILAF+V+V+GG+L LFA+R+ R+ ++      SRES+LLGNN++L+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  AATFVVLMGTLFPLLGEAMDI-KVSIRSPYFNAFFVPltlllillMVPGMMSNWKRQAGK  419
            AA +VVL+GTL+PL+   +++  +S+  P+FN+ F  L + + LL+  G +  W R+  +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  PLVRRLLWLAPAALIGGWLGARLPGATPWPGTlalilalflvfahlDDVVRRALAYNQGL  479
              +R+LLW A  + +       L+   PW     +I    +  A    +   A+A     
Sbjct  421  N-IRKLLWAAVVTTLV------LSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQR  473

Query  480  FAGLRKLTRSYIGMVVAHCglavlvagvtvvSFHETERDVRMRPGDVAEVGGYRFEFESL  539
             +   K + SY GMV AH GLAV ++G++       ERDVRMR+GD   + +YRF F  +
Sbjct  474  VSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  540  SDPVGPNYQSQKGHFLVSRDGRPVTEMNPEKRTYRASGQVMTEAAIDGRLMRDLYVALGE  599
             D  GPNY++  + + V+R+G P + +++EKR Y +S  VMTEAAIDG L RDLY ALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  600  PLGDDAWAVRIYHKPMVRWIWlgalvmalggalalSDRRYRK  641
             L+++AWAVR+Y KP VRWIW G+L+MALGG L L+D RYR+
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRR  635

365) ccmF in NC_012660


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  435 bits (1638),  Expect = 4e-123, Method: Compositional matrix adjust.
 Identities = 339/619 (55%), Positives = 458/619 (74%), Gaps = 7/619 (1%)

Query  7    IPELGQLAMILALCFAIVQAVVPLLGAWRGDRLWMSLAQPAAWGQCAFLVFAFGCLTYAF  66
            +PE G+  + LAL  A++ +V PL G  RGD   M+ A   AW     +  AF  L  AF
Sbjct  2    MPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAF  61

Query  67   MTDDFSVAYVANNSNSALPWYYKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQVM  126
            + +DF+VAYVA NSN+ LP  Y+ +A WGAHEGSLLLW L+++GWT+AV+VFSRQ+P  +
Sbjct  62   VVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADI  121

Query  127  LARVLAVMGMISIGFLLFLIMTSNPFTRILPQIPVDGHDLNPLLQDIGLIVHPPMLYMGY  186
            +ARVLAVMGM+  GFL F++ TS PF+R LP +PV+G+DLNPLLQD GLI HPP+LYMGY
Sbjct  122  VARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGY  181

Query  187  VgfsvafafaiaallggrlDAAWARWSRPWTIVAWAFLGIGITLGSWWAYYELGWGGWWF  246
            VGFSVAFAFAIAALL+GRLD+A +R +RPWT+ AW FL +GI LGS WAYYELGWGGWWF
Sbjct  182  VGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWF  241

Query  247  WDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLTS  306
            WDPVENASFMPWL GTAL+HS+AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL S
Sbjct  242  WDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVS  301

Query  307  VHAFASDPERGVFILIFLLFVVGGSLTLFALRAPVVKSQVGFNLWSRETlllgnnlvlvv  366
            VHAFASDP RG+FIL F+++V GGSL LFA+R+  V+S+V   LWSRE+LLLGNN++L+ 
Sbjct  302  VHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMA  361

Query  367  AASMILLGTLYPLVLDALSGAKLSVGPPYFNALFIPlmgllmvvmavgmlvRWKDTPVKW  426
            A  ++LLGTL PLV   L+ + +SVG P+FN++F  LM  + ++++VG LVRW     + 
Sbjct  362  AMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRN  421

Query  427  LAGMLMPVLLGSVALAVIAGFAYGDFNWAVLATFL-LAAWVLLAGVRDIFDKTRHKGLVK  485
            +  +L + ++ ++ L+V+      D   A+ A  + +A W+ + +V +  ++   +G   
Sbjct  422  IRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV-SRGTKT  480

Query  486  GLPTLTRSYWGMQIAHIGIAVCALGVVLSSQNSAERDLRLAPGESMDLAGYHFIFEGAKH  545
            +L     SYWGM  AH+G+AV   G+ +S + S ERD+R+ +G+S+ + +Y+F F   ++
Sbjct  481  SL-----SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRD  535

Query  546  FEGPNFTSDKGTVRVVRNGKEIAVLHPEKRLYTVQSSMMTEAGIDAGFTRDLYVALGEPL  605
            + GPN+ ++ + + V R+G   AVLH+EKRLY     +MTEA+ID+G+TRDLY ALGE L
Sbjct  536  ITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEEL  595

Query  606  GEGAWAVRVHVKPFVRWIW  624
            ++GAWAVR+  KPFVRWIW
Sbjct  596  DNGAWAVRLYYKPFVRWIW  614

366) Pmen_2786 in NC_009439


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  434 bits (1635),  Expect = 8e-123, Method: Compositional matrix adjust.
 Identities = 348/642 (55%), Positives = 474/642 (74%), Gaps = 7/642 (1%)

Query  1    MIPELGHLAMILALCLCLVQATLPLIGAWRGDHQWMSLAQPAAWGQFVFLLFSFICLTYA  60
            M+PE GH  + LAL + L+ +  PL G  RGD + M+ A   AW  F+ +  +F+ L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FMVDDFSVAYVAHNSNSALPWYYKFSAVWGAHEGSLLLWALILAGWTFAVAIFSRHLPEE  120
            F+V+DF+VAYVA NSN+ LP  Y+ +A WGAHEGSLLLW L+++GWT+AVA+FSR++P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MLARVLAVMGMISIGFLLFLIVTSNPFERLLPNSPMDGRDLNPLLQDFGLIVHPPMLYMG  180
            ++ARVLAVMGM+  GFL F++ TS PF R LP  P++GRDLNPLLQD GLI HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVgfsvafafaiaallggklDAAWARWSRPWTIVAWAFLGIGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIAALL+G+LD+A +R +RPWT+ AW FL +GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLT  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFATDPERGVFILAFLLIVVGGSLALFAVRAPVVKSQVGFGLWSRETlllvnnivlv  360
            SVHAFA+DP RG+FILAF+++V GGSL LFAVR+  V+S+V  +LWSRE+LLL NN++L+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  vSAAMILLGTLYPLVLDALTGAKLSVGPPYFNalflplmallmaVISIGVIVRWKDTPLN  420
             +  ++LLGTL PLV   L  + +SVG P+FN++F  LM  +  ++++G +VRW      
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  WLGRMlapvlvasvvlaliaTFVHGDFNWAVLAVCL-LAFWVVLAGVRDILDKTRHKGLF  479
             + ++L + +V+++VL+++   +  D   A+ AV + +A W+ + +V + +++  +    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG---  477

Query  480  KGLPSLGRSYWGMQIAHLGFAVCALGVVLTSLGSYERDLRMAPGDSVELGGYRFQFDGAV  539
                  + SYWGM  AHLG+AV   G+ ++   S ERD+RM +GDSV + +YRF F    
Sbjct  478  ---TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  540  HHEGPNFISDKGTVRVFDGERQIKVLHPEKRLYTVQQATMTEAGIDAGFTRDLFVALGEP  599
            +  GPN+ ++ + + V        VLH+EKRLY   +  MTEA+ID+G+TRDL+ ALGE 
Sbjct  535  DITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  600  LEQGAWAVRVHIKPFVRWIWlgallmgfggflaaaDKRYRIK  641
            L++GAWAVR+  KPFVRWIW G+LLM++GG+L  AD RYR +
Sbjct  595  LDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

367) Nit79A3_1272 in NC_015731


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  433 bits (1630),  Expect = 2e-122, Method: Compositional matrix adjust.
 Identities = 345/599 (58%), Positives = 457/599 (77%), Gaps = 15/599 (2%)

Query  47   FVFVLIAFLCLGYSFVSSDFSVMNVAKNSNSELPFHFRLAATWGSHEGSLLLWVLMLAGW  106
            F+ V  AF+ L  +FV +DF+V  VA NSN++LP  +R+AATWG+HEGSLLLWVL+++GW
Sbjct  47   FICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGW  106

Query  107  SVAVSVFSKQLPDDIVARVIgvlglvsvgfllfmlfTSNPFDRLLPA-ALEGSDLNPLLQ  165
            ++AV+VFS+Q+P DIVARV++V+G+V  GFL F+LFTS PF R LPA ++EG DLNPLLQ
Sbjct  107  TLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQ  166

Query  166  DAGMVIHPPMLYMGYVGFSVAFAFAIAALLSGRLDATWARWSRPWTIVAWVFLTIGIMLG  225
            D+G+++HPP+LYMGYVGFSVAFAFAIAALLSGRLD++ +R +RPWT+ AWVFLT+GI+LG
Sbjct  167  DPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLG  226

Query  226  SWWAYYELGWGGWWFWDPVENASFMPWLVGTALVHSLAVTEKRGSFKSWTVLLAISTFAL  285
            S WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS+AVTE+R++FK+WT+LL+I +F+L
Sbjct  227  SAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSL  286

Query  286  SLLGTFLVRSGVLTSVHAFATDPARGVFilaflvivissslllfaWRAPKVGLGGKFDML  345
             LLGTFLVRSGVL SVHAFA+DPARG+FILAF+V+V ++SLLLFA R+ +V    +  + 
Sbjct  287  CLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALW  346

Query  346  SREslllannllllvaassvllGTLYPLIIDALGLGKLSVGPPFFEAVFVPVMTPAIFLI  405
            SRESLLL+NN+LL+ A   VLLGTL PL+   LGLG +SVG PFF+++F  +M P  +L+
Sbjct  347  SRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLL  406

Query  406  GVGPISRWKQMSLPTLAIRLRWAFAV-SVVSALIAPYFMGEWK--PMVSFGLLLAFWIIV  462
            GVGP+ RW +   P    +L WA  V ++V +++ P ++ + K  +M + G+ +A WI V
Sbjct  407  GVGPLVRWGRDR-PRNIRKLLWAAVVTTLVLSVLLPWLLED-KIIAMTAVGMAMACWIAV  464

Query  463  CAFVNIKHRINNSGQGSLFSRLIKQSRSYYGMHCAHLGVAVFIIGVTLVNSYETEKDVRM  522
             A  +  +R++ + + SL         SY GM  AHLG+AV I G+++ ++Y  E+DVRM
Sbjct  465  LAVAEAVQRVSRGTKTSL---------SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRM  515

Query  523  DIGSKVTVGGYTFQFNGVSDVVGPNYKAVRGDIAVIQDEKVIREMHPEKRTYNASGMAMT  582
              G  VT+ +Y F F  V D+ GPNY++  + I+V ++      +H+EKR YN+S M MT
Sbjct  516  RAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMT  575

Query  583  EAAIDTGLFRDLYVALGEPLANNAWVVRAYHKPFVDWIWFGCLLMAIGGILSVTDRRYR  641
            EAAID GL RDLY ALGE L N AW VR Y KPFV WIW G LLMA+GG+L ++D RYR
Sbjct  576  EAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

368) Sbal175_4013 in NC_017571


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  433 bits (1629),  Expect = 2e-122, Method: Compositional matrix adjust.
 Identities = 323/649 (50%), Positives = 467/649 (72%), Gaps = 21/649 (3%)

Query  1    MIPELGHFALIIGVAFAFLLISVPLIGVARKDQYLVR----YAWPLTYGMFFFITVSVVV  56
            M+PE GH  L ++++ A+LL   PL GVAR D  ++     +AW L    F+ ++ +  V
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLL----FICVAGAFFV  56

Query  57   LAYSFAVDDFSVAYVAHHSNSQLPIFFKISAVWGGHEGSLLFWVFALSTWAAAVALFSKG  116
            L  +F V+DF+VAYVA +SN+QLP+ ++++A WG+HEGSLL+WV+ +S W+ AVA+FS+ 
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQ  116

Query  117  LEEVFTARVLAVLALIVIGFSLFMLLTSSPFERLFPI-PAEGRDLNPMLQDVGLIFHPPM  175
            +   + ARVLAV++++  GF  F+L+TS+PF R +P  P EGRDLNP+LQD GLIFHPP+
Sbjct  117  VPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPL  176

Query  176  LYLGYVGFSVSFAFAIAALMSGRLDSAWARWTRPWTLAAWIFLTGGIALGSWWAYYELGW  235
            LY+GYVGFSV+FAFAIAAL+SGRLDSA +R +RPWTLAAW+FLT GI LGS WAYYELGW
Sbjct  177  LYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGW  236

Query  236  GGWWFWDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVllsifafslsllGTFIVRS  295
            GGWWFWDPVENASFMPWL GTAL+HS+ VTE+R++F+ WT+LLSI AFSL LLGTF+VRS
Sbjct  237  GGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRS  296

Query  296  GVLTSVHSFAADPSRGMFIllllglaiggsltlFAFRASEMSSPARFELKSKETMLLVCN  355
            GVL SVH+FA+DP+RGMFIL ++ L  GGSL LFA R+  + S     L S+E++LL  N
Sbjct  297  GVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNN  356

Query  356  vlltvaagtvllgtlYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFGFMGIGPIIRWKK  415
            VLL  A   VLLGTL PL+   LG+G ISVG P+FN++F  +++ +  ++G+GP++RW +
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  416  SKAGELRRQLLIPAMVAAAIGIVTPFIVDGVFNTWVAFGIAAASWIILATARAAYNMVKS  475
             ++ ++R+ L  + + +  ++++ P ++++ + +  A G+A A WI          ++  
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI---------AVLAV  467

Query  476  KEGDISISRMGRSQL---GMIFAHLGIAVSVIGATMVSNYSIEKSVRMGPGISQELAGYT  532
             E+   +SR  ++ L   GM+ AHLG+AV++ G +   NYS+E+ VRM +G S  + +Y 
Sbjct  468  AEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  533  FKYLETKNVVGPNYTAMQGQIEVYKGDELLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDL  592
            F + E +++ GPNY +  + I V + +E  ++L +++R YN   M MTEA+ID GL RDL
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  593  YVTMGDPITSTEFAVRLNYKPFVRWLWfgaifmmiggffaaSDKRYRAK  641
            Y ++G+ + +   AVRL YKPFVRW+W G+++M +GG++  +D RYR +
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

369) Sbal117_0333 in NC_017579


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  433 bits (1630),  Expect = 2e-122, Method: Compositional matrix adjust.
 Identities = 323/649 (50%), Positives = 467/649 (72%), Gaps = 21/649 (3%)

Query  1    MIPELGHFALIIGVAFAFLLISVPLIGVARKDQYLVR----YAWPLTYGMFFFITVSVVV  56
            M+PE GH  L ++++ A+LL   PL GVAR D  ++     +AW L    F+ ++ +  V
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLL----FICVAGAFFV  56

Query  57   LAYSFAVDDFSVAYVAHHSNSQLPIFFKISAVWGGHEGSLLFWVFALSTWAAAVALFSKG  116
            L  +F V+DF+VAYVA +SN+QLP+ ++++A WG+HEGSLL+WV+ +S W+ AVA+FS+ 
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQ  116

Query  117  LEEVFTARVLAVLALIVIGFSLFMLLTSSPFERLFPI-PAEGRDLNPMLQDVGLIFHPPM  175
            +   + ARVLAV++++  GF  F+L+TS+PF R +P  P EGRDLNP+LQD GLIFHPP+
Sbjct  117  VPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPL  176

Query  176  LYLGYVGFSVSFAFAIAALMSGRLDSAWARWTRPWTLAAWIFLTGGIALGSWWAYYELGW  235
            LY+GYVGFSV+FAFAIAAL+SGRLDSA +R +RPWTLAAW+FLT GI LGS WAYYELGW
Sbjct  177  LYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGW  236

Query  236  GGWWFWDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVllsifafslsllGTFIVRS  295
            GGWWFWDPVENASFMPWL GTAL+HS+ VTE+R++F+ WT+LLSI AFSL LLGTF+VRS
Sbjct  237  GGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRS  296

Query  296  GVLTSVHSFAADPSRGMFIllllglaiggsltlFAFRASEMSSPARFELKSKETMLLVCN  355
            GVL SVH+FA+DP+RGMFIL ++ L  GGSL LFA R+  + S     L S+E++LL  N
Sbjct  297  GVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNN  356

Query  356  vlltvaagtvllgtlYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFGFMGIGPIIRWKK  415
            VLL  A   VLLGTL PL+   LG+G ISVG P+FN++F  +++ +  ++G+GP++RW +
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  416  SKAGELRRQLLIPAMVAAAIGIVTPFIVDGVFNTWVAFGIAAASWIILATARAAYNMVKS  475
             ++ ++R+ L  + + +  ++++ P ++++ + +  A G+A A WI          ++  
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI---------AVLAV  467

Query  476  KEGDISISRMGRSQL---GMIFAHLGIAVSVIGATMVSNYSIEKSVRMGPGISQELAGYT  532
             E+   +SR  ++ L   GM+ AHLG+AV++ G +   NYS+E+ VRM +G S  + +Y 
Sbjct  468  AEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  533  FKYLETKNVVGPNYTAVQGQIEVYKGDELLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDL  592
            F + E +++ GPNY +  + I V + +E  ++L +++R YN   M MTEA+ID GL RDL
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  593  YVTMGDPITSTEFAVRLNYKPFVRWLWfgaifmmiggffaaSDKRYRVK  641
            Y ++G+ + +   AVRL YKPFVRW+W G+++M +GG++  +D RYR +
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

370) Sbal_0231 in NC_009052


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  433 bits (1630),  Expect = 2e-122, Method: Compositional matrix adjust.
 Identities = 323/649 (50%), Positives = 467/649 (72%), Gaps = 21/649 (3%)

Query  1    MIPELGHFALIIGVAFAFLLISVPLIGVARKDQYLVR----YAWPLTYGMFFFITVSVVV  56
            M+PE GH  L ++++ A+LL   PL GVAR D  ++     +AW L    F+ ++ +  V
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLL----FICVAGAFFV  56

Query  57   LAYSFAVDDFSVAYVAHHSNSQLPIFFKISAVWGGHEGSLLFWVFALSTWAAAVALFSKG  116
            L  +F V+DF+VAYVA +SN+QLP+ ++++A WG+HEGSLL+WV+ +S W+ AVA+FS+ 
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQ  116

Query  117  LEEVFTARVLAVLALIVIGFSLFMLLTSSPFERLFPI-PAEGRDLNPMLQDVGLIFHPPM  175
            +   + ARVLAV++++  GF  F+L+TS+PF R +P  P EGRDLNP+LQD GLIFHPP+
Sbjct  117  VPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPL  176

Query  176  LYLGYVGFSVSFAFAIAALMSGRLDSAWARWTRPWTLAAWIFLTGGIALGSWWAYYELGW  235
            LY+GYVGFSV+FAFAIAAL+SGRLDSA +R +RPWTLAAW+FLT GI LGS WAYYELGW
Sbjct  177  LYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGW  236

Query  236  GGWWFWDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVllsifafslsllGTFIVRS  295
            GGWWFWDPVENASFMPWL GTAL+HS+ VTE+R++F+ WT+LLSI AFSL LLGTF+VRS
Sbjct  237  GGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRS  296

Query  296  GVLTSVHSFAADPSRGMFIllllglaiggsltlFAFRASEMSSPARFELKSKETMLLVCN  355
            GVL SVH+FA+DP+RGMFIL ++ L  GGSL LFA R+  + S     L S+E++LL  N
Sbjct  297  GVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNN  356

Query  356  vlltvaagtvllgtlYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFGFMGIGPIIRWKK  415
            VLL  A   VLLGTL PL+   LG+G ISVG P+FN++F  +++ +  ++G+GP++RW +
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  416  SKAGELRRQLLIPAMVAAAIGIVTPFIVDGVFNTWVAFGIAAASWIILATARAAYNMVKS  475
             ++ ++R+ L  + + +  ++++ P ++++ + +  A G+A A WI          ++  
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI---------AVLAV  467

Query  476  KEGDISISRMGRSQL---GMIFAHLGIAVSVIGATMVSNYSIEKSVRMGPGISQELAGYT  532
             E+   +SR  ++ L   GM+ AHLG+AV++ G +   NYS+E+ VRM +G S  + +Y 
Sbjct  468  AEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  533  FKYLETKNVVGPNYTAVQGQIEVYKGDELLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDL  592
            F + E +++ GPNY +  + I V + +E  ++L +++R YN   M MTEA+ID GL RDL
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  593  YVTMGDPITSTEFAVRLNYKPFVRWLWfgaifmmiggffaaSDKRYRVK  641
            Y ++G+ + +   AVRL YKPFVRW+W G+++M +GG++  +D RYR +
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

371) Shew185_0231 in NC_009665


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  433 bits (1629),  Expect = 2e-122, Method: Compositional matrix adjust.
 Identities = 323/649 (50%), Positives = 467/649 (72%), Gaps = 21/649 (3%)

Query  1    MIPELGHFALIIGVAFAFLLISVPLIGVARKDQYLVR----YAWPLTYGMFFFITVSVVV  56
            M+PE GH  L ++++ A+LL   PL GVAR D  ++     +AW L    F+ ++ +  V
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLL----FICVAGAFFV  56

Query  57   LAYSFAVDDFSVAYVAHHSNSQLPIFFKISAVWGGHEGSLLFWVFALSTWAAAVALFSKG  116
            L  +F V+DF+VAYVA +SN+QLP+ ++++A WG+HEGSLL+WV+ +S W+ AVA+FS+ 
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQ  116

Query  117  LEEVFTARVLAVLALIVIGFSLFMLLTSSPFERLFPI-PAEGRDLNPMLQDVGLIFHPPM  175
            +   + ARVLAV++++  GF  F+L+TS+PF R +P  P EGRDLNP+LQD GLIFHPP+
Sbjct  117  VPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPL  176

Query  176  LYLGYVGFSVSFAFAIAALMSGRLDSAWARWTRPWTLAAWIFLTGGIALGSWWAYYELGW  235
            LY+GYVGFSV+FAFAIAAL+SGRLDSA +R +RPWTLAAW+FLT GI LGS WAYYELGW
Sbjct  177  LYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGW  236

Query  236  GGWWFWDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVllsifafslsllGTFIVRS  295
            GGWWFWDPVENASFMPWL GTAL+HS+ VTE+R++F+ WT+LLSI AFSL LLGTF+VRS
Sbjct  237  GGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRS  296

Query  296  GVLTSVHSFAADPSRGMFIllllglaiggsltlFAFRASEMSSPARFELKSKETMLLVCN  355
            GVL SVH+FA+DP+RGMFIL ++ L  GGSL LFA R+  + S     L S+E++LL  N
Sbjct  297  GVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNN  356

Query  356  vlltvaagtvllgtlYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFGFMGIGPIIRWKK  415
            VLL  A   VLLGTL PL+   LG+G ISVG P+FN++F  +++ +  ++G+GP++RW +
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  416  SKAGELRRQLLIPAMIAAAIGIVTPFIVDGVFNTWVAFGIAAASWIILATARAAYNMVKS  475
             ++ ++R+ L  + + +  ++++ P ++++ + +  A G+A A WI          ++  
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI---------AVLAV  467

Query  476  KEGDISISRMGRSQL---GMIFAHLGIAVSVIGATMVSNYSIEKSVRMGPGISQELAGYT  532
             E+   +SR  ++ L   GM+ AHLG+AV++ G +   NYS+E+ VRM +G S  + +Y 
Sbjct  468  AEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  533  FKYLETKNVVGPNYTAMQGQIEVYKGDELLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDL  592
            F + E +++ GPNY +  + I V + +E  ++L +++R YN   M MTEA+ID GL RDL
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  593  YVTMGDPITSTEFAVRLNYKPFVRWLWfgaifmmiggffaaSDKRYRAK  641
            Y ++G+ + +   AVRL YKPFVRW+W G+++M +GG++  +D RYR +
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

372) Sbal195_0234 in NC_009997


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  433 bits (1629),  Expect = 2e-122, Method: Compositional matrix adjust.
 Identities = 323/649 (50%), Positives = 467/649 (72%), Gaps = 21/649 (3%)

Query  1    MIPELGHFALIIGVAFAFLLISVPLIGVARKDQYLVR----YAWPLTYGMFFFITVSVIV  56
            M+PE GH  L ++++ A+LL   PL GVAR D  ++     +AW L    F+ ++ + +V
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLL----FICVAGAFFV  56

Query  57   LAYSFAVDDFSVAYVAHHSNSQLPIFFKISAVWGGHEGSLLFWVFALSTWAAAVALFSKG  116
            L  +F V+DF+VAYVA +SN+QLP+ ++++A WG+HEGSLL+WV+ +S W+ AVA+FS+ 
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQ  116

Query  117  LEEVFTARVLAVLALIVIGFSLFMLLTSSPFERLFPI-PAEGRDLNPMLQDVGLIFHPPM  175
            +   + ARVLAV++++  GF  F+L+TS+PF R +P  P EGRDLNP+LQD GLIFHPP+
Sbjct  117  VPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPL  176

Query  176  LYLGYVGFSVSFAFAIAALMSGRLDSAWARWTRPWTLAAWIFLTGGIALGSWWAYYELGW  235
            LY+GYVGFSV+FAFAIAAL+SGRLDSA +R +RPWTLAAW+FLT GI LGS WAYYELGW
Sbjct  177  LYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGW  236

Query  236  GGWWFWDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVllsifafslsllGTFIVRS  295
            GGWWFWDPVENASFMPWL GTAL+HS+ VTE+R++F+ WT+LLSI AFSL LLGTF+VRS
Sbjct  237  GGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRS  296

Query  296  GVLTSVHSFAADPSRGMFIllllglaiggsltlFAFRASEMSSPARFELKSKETMLLVCN  355
            GVL SVH+FA+DP+RGMFIL ++ L  GGSL LFA R+  + S     L S+E++LL  N
Sbjct  297  GVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNN  356

Query  356  vlltvaagtvllgtlYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFGFMGIGPIIRWKK  415
            VLL  A   VLLGTL PL+   LG+G ISVG P+FN++F  +++ +  ++G+GP++RW +
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  416  SKAGELRRQLLIPAMVAAAIGIVTPFIVDGVFNIWVAFGIAAASWIILATARAAYNMVKS  475
             ++ ++R+ L  + + +  ++++ P ++++ +    A G+A A WI          ++  
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI---------AVLAV  467

Query  476  KEGDISISRMGRSQL---GMIFAHLGIAVSVIGATMVSNYSIEKSVRMGPGISQELAGYT  532
             E+   +SR  ++ L   GM+ AHLG+AV++ G +   NYS+E+ VRM +G S  + +Y 
Sbjct  468  AEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  533  FKYLETKNVVGPNYTAMQGQIEVYKGDELLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDL  592
            F + E +++ GPNY +  + I V + +E  ++L +++R YN   M MTEA+ID GL RDL
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  593  YVTMGDPITSTEFAVRLNYKPFVRWLWfgaifmmiggffaaSDKRYRAK  641
            Y ++G+ + +   AVRL YKPFVRW+W G+++M +GG++  +D RYR +
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

373) Sbal678_0240 in NC_016901


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  433 bits (1629),  Expect = 2e-122, Method: Compositional matrix adjust.
 Identities = 323/649 (50%), Positives = 467/649 (72%), Gaps = 21/649 (3%)

Query  1    MIPELGHFALIIGVAFAFLLISVPLIGVARKDQYLVR----YAWPLTYGMFFFITVSVIV  56
            M+PE GH  L ++++ A+LL   PL GVAR D  ++     +AW L    F+ ++ + +V
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLL----FICVAGAFFV  56

Query  57   LAYSFAVDDFSVAYVAHHSNSQLPIFFKISAVWGGHEGSLLFWVFALSTWAAAVALFSKG  116
            L  +F V+DF+VAYVA +SN+QLP+ ++++A WG+HEGSLL+WV+ +S W+ AVA+FS+ 
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQ  116

Query  117  LEEVFTARVLAVLALIVIGFSLFMLLTSSPFERLFPI-PAEGRDLNPMLQDVGLIFHPPM  175
            +   + ARVLAV++++  GF  F+L+TS+PF R +P  P EGRDLNP+LQD GLIFHPP+
Sbjct  117  VPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPL  176

Query  176  LYLGYVGFSVSFAFAIAALMSGRLDSAWARWTRPWTLAAWIFLTGGIALGSWWAYYELGW  235
            LY+GYVGFSV+FAFAIAAL+SGRLDSA +R +RPWTLAAW+FLT GI LGS WAYYELGW
Sbjct  177  LYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGW  236

Query  236  GGWWFWDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVllsifafslsllGTFIVRS  295
            GGWWFWDPVENASFMPWL GTAL+HS+ VTE+R++F+ WT+LLSI AFSL LLGTF+VRS
Sbjct  237  GGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRS  296

Query  296  GVLTSVHSFAADPSRGMFIllllglaiggsltlFAFRASEMSSPARFELKSKETMLLVCN  355
            GVL SVH+FA+DP+RGMFIL ++ L  GGSL LFA R+  + S     L S+E++LL  N
Sbjct  297  GVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNN  356

Query  356  vlltvaagtvllgtlYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFGFMGIGPIIRWKK  415
            VLL  A   VLLGTL PL+   LG+G ISVG P+FN++F  +++ +  ++G+GP++RW +
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  416  SKAGELRRQLLIPAMVAAAIGIVTPFIVDGVFNIWVAFGIAAASWIILATARAAYNMVKS  475
             ++ ++R+ L  + + +  ++++ P ++++ +    A G+A A WI          ++  
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI---------AVLAV  467

Query  476  KEGDISISRMGRSQL---GMIFAHLGIAVSVIGATMVSNYSIEKSVRMGPGISQELAGYT  532
             E+   +SR  ++ L   GM+ AHLG+AV++ G +   NYS+E+ VRM +G S  + +Y 
Sbjct  468  AEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  533  FKYLETKNVVGPNYTAMQGQIEVYKGDELLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDL  592
            F + E +++ GPNY +  + I V + +E  ++L +++R YN   M MTEA+ID GL RDL
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  593  YVTMGDPITSTEFAVRLNYKPFVRWLWfgaifmmiggffaaSDKRYRAK  641
            Y ++G+ + +   AVRL YKPFVRW+W G+++M +GG++  +D RYR +
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

374) PPS_4053 in NC_015733


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  432 bits (1627),  Expect = 3e-122, Method: Compositional matrix adjust.
 Identities = 337/619 (55%), Positives = 455/619 (74%), Gaps = 7/619 (1%)

Query  7    IPELGHLAMILALCFSLVQAVVPLLGAWRGDRLWMSLAQPAAWGQFAFMLFAFGCLTYAF  66
            +PE GH  + LAL  +L+ +V PL G  RGD   M+ A   AW  F  +  AF  L  AF
Sbjct  2    MPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAF  61

Query  67   MADDFsvayvasnsnsaLPWYYKFSAVWGAHEGSLLLWALILAGWTFAVSVFSRQLPQVM  126
            + +DF+VAYVA+NSN+ LP  Y+ +A WGAHEGSLLLW L+++GWT+AV+VFSRQ+P  +
Sbjct  62   VVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADI  121

Query  127  LARVLAVMGMISIGFLLFLILTSNPFERILPQVPMDGRDLNPLLQDIGLIVHPPMLYMGY  186
            +ARVLAVMGM+  GFL F+++TS PF R LP  P++GRDLNPLLQD GLI HPP+LYMGY
Sbjct  122  VARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGY  181

Query  187  VgfsvafafaiaallggrlDAAWARWSRPWTIVAWAFLGIGITLGSWWAYYELGWGGWWF  246
            VGFSVAFAFAIAALL+GRLD+A +R +RPWT+ AW FL +GI LGS WAYYELGWGGWWF
Sbjct  182  VGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWF  241

Query  247  WDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLTS  306
            WDPVENASFMPWL GTAL+HS+AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL S
Sbjct  242  WDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVS  301

Query  307  VHAFASDPERGVFILIFLLFVVGGSLTLFALRAPVVKSQVGFNLWSRETlllgnnlvlvv  366
            VHAFASDP RG+FIL F+++V GGSL LFA+R+  V+S+V   LWSRE+LLLGNN++L+ 
Sbjct  302  VHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMA  361

Query  367  AASMILLGTLYPLVLDALSGAKLSVGPPYFNALFIPLMAILMVVMAIGVLVRWKDTPVKW  426
            A  ++LLGTL PLV   L+ + +SVG P+FN++F  LM  + +++++G LVRW     + 
Sbjct  362  AMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRN  421

Query  427  LLGML-TPvllgtaalavvagiaygDFNWAVLATFVLAAWVLLAGVRDIFDKTRHKGLVK  485
            +  +L ++V+       +++ +  + +         +A W+ + +V +  ++   +G   
Sbjct  422  IRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV-SRGTKT  480

Query  486  GLPTLTRSYWGMQLAHLGIAVCALGVVLSSQNSAERDLRLAPGESMDLGGYQFFFEGARH  545
            +L     SYWGM  AHLG+AV   G+ +S + S ERD+R+ +G+S+ + +Y+F F   R+
Sbjct  481  SL-----SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRD  535

Query  546  FEGPNFTSDKGTVRVIRDGREITVLHPEKRLYTVQNSVMTEPGIDAGFTRDLYVALGEPL  605
            + GPN+ ++ + + V R+G   +VLH+EKRLY     VMTE++ID+G+TRDLY ALGE L
Sbjct  536  ITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEEL  595

Query  606  GDGAWAVRVHVKPFVRWIW  624
            ++GAWAVR+  KPFVRWIW
Sbjct  596  DNGAWAVRLYYKPFVRWIW  614

375) G655_17820 in NC_020912


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  431 bits (1621),  Expect = 1e-121, Method: Compositional matrix adjust.
 Identities = 334/591 (57%), Positives = 444/591 (76%), Gaps = 7/591 (1%)

Query  30   RGDRQWMSLARPAAWGQFAFLAFAFGCLTWAFLRDDFSVAYVAGNSNSALPWYYKFSAVW  89
            RGD + M+ A   AW  F  +A AF  L  AF+ +DF+VAYVAGNSN+ LP  Y+ +A W
Sbjct  30   RGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATW  89

Query  90   GAHEGSLLLWALILGGWTFAVSIFSRQLPEVMLARVLAVMGMISTGFLLFLIITSNPFSR  149
            GAHEGSLLLW L+++GWT+AV++FSRQ+P  ++ARVLAVMGM+ +GFL F+++TS PF+R
Sbjct  90   GAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFAR  149

Query  150  LLPQTPMDGNDLNPLLQDVGLIVHPPMLYMGYVgfsvafafaiaallggrlDAAWARWSR  209
             LP  P++G DLNPLLQD GLI HPP+LYMGYVGFSVAFAFAIAALL+GRLD+A +R +R
Sbjct  150  TLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFAR  209

Query  210  PWTLVAWAFLGIGIVLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHSLAVTEKR  269
            PWTL AW FL +GIVLGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS+AVTE+R
Sbjct  210  PWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQR  269

Query  270  GVFKSWTVllaiaafslsllGTFLVRSGVLTSVHAFASDPERGVFILAFLLLVVGGSLTL  329
            + FK+WT+LL+I AFSL LLGTFLVRSGVL SVHAFASDP RG+FILAF++LV GGSL L
Sbjct  270  AGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLL  329

Query  330  FALRAPVVKSQVGFALWSRETllllnnlvlvvAASMILLGTLYPLLLDALSGAKLSVGPP  389
            FA+R+  V+S+V  ALWSRE+LLL NN++L+ A  ++LLGTL PL+   L+ + +SVG P
Sbjct  330  FAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEP  389

Query  390  YFNamflplmaalmaalavgvlvRWKDTPSRWLLGML-TPvlvasavlaaaGSMYFGDFN  448
            +FN+MF  LM ++   L+VG LVRW    +R +  +L ++V+ +  +      +  + + 
Sbjct  390  FFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKII  449

Query  449  WAVLAVFLLSAWVVLAGFRDFLDKTRHKGVLAGARSLTRSYWGMQLAHLGIAVCAIGIVL  508
                    ++ W+ + +  + +++  +     G+++ + SYWGM  AHLG+AV   GI +
Sbjct  450  AMTAVGMAMACWIAVLAVAEAVQRVSR-----GTKT-SLSYWGMVAAHLGLAVTITGIAF  503

Query  509  SSQYSAQRDLRMSPGDTVELGGYHFLFDGAKHHEGPNYTSDKGSIHVSRDGKEIATLHPE  568
            S +YS +RD+RM +GD+V + +Y+F F   ++  GPNY ++ + I V+R+G   A LH+E
Sbjct  504  SQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAE  563

Query  569  KRLYTVQSSMMTEAGIDAGFTRDLYVALGEPLENGAWAVRVHVKPFVRWIW  619
            KRLY     +MTEA+ID+G+TRDLY ALGE L+NGAWAVR+  KPFVRWIW
Sbjct  564  KRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

376) PADK2_18325 in NC_018080


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  431 bits (1621),  Expect = 1e-121, Method: Compositional matrix adjust.
 Identities = 334/591 (57%), Positives = 445/591 (76%), Gaps = 7/591 (1%)

Query  30   RGDRQWMSLARPAAWGQFAFLAFAFGCLTWAFLRDDFSVAYVAGNSNSALPWYYKFSAVW  89
            RGD + M+ A   AW  F  +A AF  L  AF+ +DF+VAYVAGNSN+ LP  Y+ +A W
Sbjct  30   RGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATW  89

Query  90   GAHEGSLLLWALILGGWTFAVSIFSRQLPEVMLARVLAVMGMISTGFLLFLIITSNPFSR  149
            GAHEGSLLLW L+++GWT+AV++FSRQ+P  ++ARVLAVMGM+ +GFL F+++TS PF+R
Sbjct  90   GAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFAR  149

Query  150  LLPQTPMDGNDLNPLLQDVGLIVHPPMLYMGYVgfsvafafaiaallggrlDAAWARWSR  209
             LP  P++G DLNPLLQD GLI HPP+LYMGYVGFSVAFAFAIAALL+GRLD+A +R +R
Sbjct  150  TLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFAR  209

Query  210  PWTLVAWAFLGIGIVLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHSLAVTEKR  269
            PWTL AW FL +GIVLGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS+AVTE+R
Sbjct  210  PWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQR  269

Query  270  GVFKSWTVllaiaafslsllGTFLVRSGVLTSVHAFASDPERGVFILAFLLLVVGGSLTL  329
            + FK+WT+LL+I AFSL LLGTFLVRSGVL SVHAFASDP RG+FILAF++LV GGSL L
Sbjct  270  AGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLL  329

Query  330  FALRAPVVKSQVGFALWSRETllllnnlvlvvAASMILLGTLYPLLLDALSGAKLSVGPP  389
            FA+R+  V+S+V  ALWSRE+LLL NN++L+ A  ++LLGTL PL+   L+ + +SVG P
Sbjct  330  FAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEP  389

Query  390  YFNamflplmaalmaalavgvlvRWKDTPSRWLLGML-TPvlaasavlaaaGSMYFGDFN  448
            +FN+MF  LM ++   L+VG LVRW    +R +  +L ++V+++  +      +  + + 
Sbjct  390  FFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKII  449

Query  449  WAVLAVFLLSAWVVLAGFRDFLDKTRHKGVLAGARSLTRSYWGMQLAHLGIAVCAIGIVL  508
                    ++ W+ + +  + +++  +     G+++ + SYWGM  AHLG+AV   GI +
Sbjct  450  AMTAVGMAMACWIAVLAVAEAVQRVSR-----GTKT-SLSYWGMVAAHLGLAVTITGIAF  503

Query  509  SSQYSAQRDLRMSPGDTVELGGYHFLFDGAKHHEGPNYTSDKGSIHVSRDGKEIATLHPE  568
            S +YS +RD+RM +GD+V + +Y+F F   ++  GPNY ++ + I V+R+G   A LH+E
Sbjct  504  SQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAE  563

Query  569  KRLYTVQSSMMTEAGIDAGFTRDLYVALGEPLENGAWAVRVHVKPFVRWIW  619
            KRLY     +MTEA+ID+G+TRDLY ALGE L+NGAWAVR+  KPFVRWIW
Sbjct  564  KRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

377) ccmF in NC_017548


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  431 bits (1621),  Expect = 1e-121, Method: Compositional matrix adjust.
 Identities = 334/591 (57%), Positives = 444/591 (76%), Gaps = 7/591 (1%)

Query  30   RGDRQWMSLARPAAWGQFAFLAFAFGCLTWAFLRDDFSVAYVAGNSNSALPWYYKFSAVW  89
            RGD + M+ A   AW  F  +A AF  L  AF+ +DF+VAYVAGNSN+ LP  Y+ +A W
Sbjct  30   RGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATW  89

Query  90   GAHEGSLLLWALILGGWTFAVSIFSRQLPEVMLARVLAVMGMISTGFLLFLIITSNPFSR  149
            GAHEGSLLLW L+++GWT+AV++FSRQ+P  ++ARVLAVMGM+ +GFL F+++TS PF+R
Sbjct  90   GAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFAR  149

Query  150  LLPQTPMDGNDLNPLLQDVGLIVHPPMLYMGYVgfsvafafaiaallggrlDAAWARWSR  209
             LP  P++G DLNPLLQD GLI HPP+LYMGYVGFSVAFAFAIAALL+GRLD+A +R +R
Sbjct  150  TLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFAR  209

Query  210  PWTLVAWAFLGIGIVLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHSLAVTEKR  269
            PWTL AW FL +GIVLGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS+AVTE+R
Sbjct  210  PWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQR  269

Query  270  GVFKSWTVllaiaafslsllGTFLVRSGVLTSVHAFASDPERGVFILAFLLLVVGGSLTL  329
            + FK+WT+LL+I AFSL LLGTFLVRSGVL SVHAFASDP RG+FILAF++LV GGSL L
Sbjct  270  AGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLL  329

Query  330  FALRAPVVKSQVGFALWSRETllllnnlvlvvAASMILLGTLYPLLLDALSGAKLSVGPP  389
            FA+R+  V+S+V  ALWSRE+LLL NN++L+ A  ++LLGTL PL+   L+ + +SVG P
Sbjct  330  FAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEP  389

Query  390  YFNamflplmaalmaalavgvlvRWKDTPSRWLLGML-TPvlvasavlaaaGSMYFGDFN  448
            +FN+MF  LM ++   L+VG LVRW    +R +  +L ++V+ +  +      +  + + 
Sbjct  390  FFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKII  449

Query  449  WAVLAVFLLSAWVVLAGFRDFLDKTRHKGVLAGARSLTRSYWGMQLAHLGIAVCAIGIVL  508
                    ++ W+ + +  + +++  +     G+++ + SYWGM  AHLG+AV   GI +
Sbjct  450  AMTAVGMAMACWIAVLAVAEAVQRVSR-----GTKT-SLSYWGMVAAHLGLAVTITGIAF  503

Query  509  SSQYSAQRDLRMSPGDTVELGGYHFLFDGAKHHEGPNYTSDKGSIHVSRDGKEIATLHPE  568
            S +YS +RD+RM +GD+V + +Y+F F   ++  GPNY ++ + I V+R+G   A LH+E
Sbjct  504  SQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAE  563

Query  569  KRLYTVQSSMMTEAGIDAGFTRDLYVALGEPLENGAWAVRVHVKPFVRWIW  619
            KRLY     +MTEA+ID+G+TRDLY ALGE L+NGAWAVR+  KPFVRWIW
Sbjct  564  KRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

378) ccmF in NC_002516


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  431 bits (1621),  Expect = 1e-121, Method: Compositional matrix adjust.
 Identities = 334/591 (57%), Positives = 445/591 (76%), Gaps = 7/591 (1%)

Query  30   RGDRQWMSLARPAAWGQFAFLAFAFGCLTWAFLRDDFSVAYVAGNSNSALPWYYKFSAVW  89
            RGD + M+ A   AW  F  +A AF  L  AF+ +DF+VAYVAGNSN+ LP  Y+ +A W
Sbjct  30   RGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATW  89

Query  90   GAHEGSLLLWALILGGWTFAVSIFSRQLPEVMLARVLAVMGMISTGFLLFLIITSNPFSR  149
            GAHEGSLLLW L+++GWT+AV++FSRQ+P  ++ARVLAVMGM+ +GFL F+++TS PF+R
Sbjct  90   GAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFAR  149

Query  150  LLPQTPMDGNDLNPLLQDVGLIVHPPMLYMGYVgfsvafafaiaallggrlDAAWARWSR  209
             LP  P++G DLNPLLQD GLI HPP+LYMGYVGFSVAFAFAIAALL+GRLD+A +R +R
Sbjct  150  TLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFAR  209

Query  210  PWTLVAWAFLGIGIVLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHSLAVTEKR  269
            PWTL AW FL +GIVLGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS+AVTE+R
Sbjct  210  PWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQR  269

Query  270  GVFKSWTVllaiaafslsllGTFLVRSGVLTSVHAFASDPERGVFILAFLLLVVGGSLTL  329
            + FK+WT+LL+I AFSL LLGTFLVRSGVL SVHAFASDP RG+FILAF++LV GGSL L
Sbjct  270  AGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLL  329

Query  330  FALRAPVVKSQVGFALWSRETllllnnlvlvvAASMILLGTLYPLLLDALSGAKLSVGPP  389
            FA+R+  V+S+V  ALWSRE+LLL NN++L+ A  ++LLGTL PL+   L+ + +SVG P
Sbjct  330  FAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEP  389

Query  390  YFNamflplmaalmaalavgvlvRWKDTPSRWLLGML-TPvlaasavlaaaGSMYFGDFN  448
            +FN+MF  LM ++   L+VG LVRW    +R +  +L ++V+++  +      +  + + 
Sbjct  390  FFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKII  449

Query  449  WAVLAVFLLSAWVVLAGFRDFLDKTRHKGVLAGARSLTRSYWGMQLAHLGIAVCAIGIVL  508
                    ++ W+ + +  + +++  +     G+++ + SYWGM  AHLG+AV   GI +
Sbjct  450  AMTAVGMAMACWIAVLAVAEAVQRVSR-----GTKT-SLSYWGMVAAHLGLAVTITGIAF  503

Query  509  SSQYSAQRDLRMSPGDTVELGGYHFLFDGAKHHEGPNYTSDKGSIHVSRDGKEIATLHPE  568
            S +YS +RD+RM +GD+V + +Y+F F   ++  GPNY ++ + I V+R+G   A LH+E
Sbjct  504  SQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAE  563

Query  569  KRLYTVQSSMMTEAGIDAGFTRDLYVALGEPLENGAWAVRVHVKPFVRWIW  619
            KRLY     +MTEA+ID+G+TRDLY ALGE L+NGAWAVR+  KPFVRWIW
Sbjct  564  KRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

379) M062_07920 in NC_021577


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  431 bits (1621),  Expect = 1e-121, Method: Compositional matrix adjust.
 Identities = 334/591 (57%), Positives = 444/591 (76%), Gaps = 7/591 (1%)

Query  30   RGDRQWMSLARPAAWGQFAFLAFAFGCLTWAFLRDDFSVAYVAGNSNSALPWYYKFSAVW  89
            RGD + M+ A   AW  F  +A AF  L  AF+ +DF+VAYVAGNSN+ LP  Y+ +A W
Sbjct  30   RGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATW  89

Query  90   GAHEGSLLLWALILGGWTFAVSIFSRQLPEVMLARVLAVMGMISTGFLLFLIITSNPFSR  149
            GAHEGSLLLW L+++GWT+AV++FSRQ+P  ++ARVLAVMGM+ +GFL F+++TS PF+R
Sbjct  90   GAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFAR  149

Query  150  LLPQTPMDGNDLNPLLQDVGLIVHPPMLYMGYVgfsvafafaiaallggrlDAAWARWSR  209
             LP  P++G DLNPLLQD GLI HPP+LYMGYVGFSVAFAFAIAALL+GRLD+A +R +R
Sbjct  150  TLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFAR  209

Query  210  PWTLVAWAFLGIGIVLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHSLAVTEKR  269
            PWTL AW FL +GIVLGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS+AVTE+R
Sbjct  210  PWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQR  269

Query  270  GVFKSWTVllaiaafslsllGTFLVRSGVLTSVHAFASDPERGVFILAFLLLVVGGSLTL  329
            + FK+WT+LL+I AFSL LLGTFLVRSGVL SVHAFASDP RG+FILAF++LV GGSL L
Sbjct  270  AGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLL  329

Query  330  FALRAPVVKSQVGFALWSRETllllnnlvlvvAASMILLGTLYPLLLDALSGAKLSVGPP  389
            FA+R+  V+S+V  ALWSRE+LLL NN++L+ A  ++LLGTL PL+   L+ + +SVG P
Sbjct  330  FAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEP  389

Query  390  YFNamflplmaalmaalavgvlvRWKDTPSRWLLGML-TPvlvasavlaaaGSMYFGDFN  448
            +FN+MF  LM ++   L+VG LVRW    +R +  +L ++V+ +  +      +  + + 
Sbjct  390  FFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKII  449

Query  449  WAVLAVFLLSAWVVLAGFRDFLDKTRHKGVLAGARSLTRSYWGMQLAHLGIAVCAIGIVL  508
                    ++ W+ + +  + +++  +     G+++ + SYWGM  AHLG+AV   GI +
Sbjct  450  AMTAVGMAMACWIAVLAVAEAVQRVSR-----GTKT-SLSYWGMVAAHLGLAVTITGIAF  503

Query  509  SSQYSAQRDLRMSPGDTVELGGYHFLFDGAKHHEGPNYTSDKGSIHVSRDGKEIATLHPE  568
            S +YS +RD+RM +GD+V + +Y+F F   ++  GPNY ++ + I V+R+G   A LH+E
Sbjct  504  SQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAE  563

Query  569  KRLYTVQSSMMTEAGIDAGFTRDLYVALGEPLENGAWAVRVHVKPFVRWIW  619
            KRLY     +MTEA+ID+G+TRDLY ALGE L+NGAWAVR+  KPFVRWIW
Sbjct  564  KRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

380) ccmF in NC_008463


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  431 bits (1621),  Expect = 1e-121, Method: Compositional matrix adjust.
 Identities = 334/591 (57%), Positives = 444/591 (76%), Gaps = 7/591 (1%)

Query  30   RGDRQWMSLARPAAWGQFAFLAFAFGCLTWAFLRDDFSVAYVAGNSNSALPWYYKFSAVW  89
            RGD + M+ A   AW  F  +A AF  L  AF+ +DF+VAYVAGNSN+ LP  Y+ +A W
Sbjct  30   RGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATW  89

Query  90   GAHEGSLLLWALILGGWTFAVSIFSRQLPEVMLARVLAVMGMISTGFLLFLIITSNPFSR  149
            GAHEGSLLLW L+++GWT+AV++FSRQ+P  ++ARVLAVMGM+ +GFL F+++TS PF+R
Sbjct  90   GAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFAR  149

Query  150  LLPQTPMDGNDLNPLLQDVGLIVHPPMLYMGYVgfsvafafaiaallggrlDAAWARWSR  209
             LP  P++G DLNPLLQD GLI HPP+LYMGYVGFSVAFAFAIAALL+GRLD+A +R +R
Sbjct  150  TLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFAR  209

Query  210  PWTLVAWAFLGIGIVLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHSLAVTEKR  269
            PWTL AW FL +GIVLGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS+AVTE+R
Sbjct  210  PWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQR  269

Query  270  GVFKSWTVllaiaafslsllGTFLVRSGVLTSVHAFASDPERGVFILAFLLLVVGGSLTL  329
            + FK+WT+LL+I AFSL LLGTFLVRSGVL SVHAFASDP RG+FILAF++LV GGSL L
Sbjct  270  AGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLL  329

Query  330  FALRAPVVKSQVGFALWSRETllllnnlvlvvAASMILLGTLYPLLLDALSGAKLSVGPP  389
            FA+R+  V+S+V  ALWSRE+LLL NN++L+ A  ++LLGTL PL+   L+ + +SVG P
Sbjct  330  FAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEP  389

Query  390  YFNamflplmaalmaalavgvlvRWKDTPSRWLLGML-TPvlvasavlaaaGSMYFGDFN  448
            +FN+MF  LM ++   L+VG LVRW    +R +  +L ++V+ +  +      +  + + 
Sbjct  390  FFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKII  449

Query  449  WAVLAVFLLSAWVVLAGFRDFLDKTRHKGVLAGARSLTRSYWGMQLAHLGIAVCAIGIVL  508
                    ++ W+ + +  + +++  +     G+++ + SYWGM  AHLG+AV   GI +
Sbjct  450  AMTAVGMAMACWIAVLAVAEAVQRVSR-----GTKT-SLSYWGMVAAHLGLAVTITGIAF  503

Query  509  SSQYSAQRDLRMSPGDTVELGGYHFLFDGAKHHEGPNYTSDKGSIHVSRDGKEIATLHPE  568
            S +YS +RD+RM +GD+V + +Y+F F   ++  GPNY ++ + I V+R+G   A LH+E
Sbjct  504  SQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAE  563

Query  569  KRLYTVQSSMMTEAGIDAGFTRDLYVALGEPLENGAWAVRVHVKPFVRWIW  619
            KRLY     +MTEA+ID+G+TRDLY ALGE L+NGAWAVR+  KPFVRWIW
Sbjct  564  KRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

381) ccmF in NC_011770


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  431 bits (1624),  Expect = 6e-122, Method: Compositional matrix adjust.
 Identities = 334/591 (57%), Positives = 444/591 (76%), Gaps = 7/591 (1%)

Query  30   RGDRQWMSLARPAAWGQFAFLAFAFGCLTWAFLRDDFSVAYVAGNSNSALPWYYKFSAVW  89
            RGD + M+ A   AW  F  +A AF  L  AF+ +DF+VAYVAGNSN+ LP  Y+ +A W
Sbjct  30   RGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATW  89

Query  90   GAHEGSLLLWALILGGWTFAVSIFSRQLPEVMLARVLAVMGMISTGFLLFLIITSNPFSR  149
            GAHEGSLLLW L+++GWT+AV++FSRQ+P  ++ARVLAVMGM+ +GFL F+++TS PF+R
Sbjct  90   GAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFAR  149

Query  150  LLPQTPMDGNDLNPLLQDVGLIVHPPMLYMGYVgfsvafafaiaallggrlDAAWARWSR  209
             LP  P++G DLNPLLQD GLI HPP+LYMGYVGFSVAFAFAIAALL+GRLD+A +R +R
Sbjct  150  TLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFAR  209

Query  210  PWTLVAWAFLGIGIVLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHSLAVTEKR  269
            PWTL AW FL +GIVLGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS+AVTE+R
Sbjct  210  PWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQR  269

Query  270  GVFKSWTVllaiaafslsllGTFLVRSGVLTSVHAFASDPERGVFILAFLLLVVGGSLTL  329
            + FK+WT+LL+I AFSL LLGTFLVRSGVL SVHAFASDP RG+FILAF++LV GGSL L
Sbjct  270  AGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLL  329

Query  330  FALRAPVVKSQVGFALWSRETllllnnlmlVVAASMILLGTLYPLLLDALSGAKLSVGPP  389
            FA+R+  V+S+V  ALWSRE+LLL NN++L+ A  ++LLGTL PL+   L+ + +SVG P
Sbjct  330  FAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEP  389

Query  390  YFNamflplmaalmaalavgvlvRWKDTPSRWLLGML-TPvlvasavlaaaGSMYFGDFN  448
            +FN+MF  LM ++   L+VG LVRW    +R +  +L ++V+ +  +      +  + + 
Sbjct  390  FFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKII  449

Query  449  WAVLAVFLLSAWVVLAGFRDFLDKTRHKGVLAGARSLTRSYWGMQLAHLGIAVCAIGIVL  508
                    ++ W+ + +  + +++  +     G+++ + SYWGM  AHLG+AV   GI +
Sbjct  450  AMTAVGMAMACWIAVLAVAEAVQRVSR-----GTKT-SLSYWGMVAAHLGLAVTITGIAF  503

Query  509  SSQYSAQRDLRMSPGDTVELGGYHFLFDGAKHHEGPNYTSDKGSIHVSRDGKEIATLHPE  568
            S +YS +RD+RM +GD+V + +Y+F F   ++  GPNY ++ + I V+R+G   A LH+E
Sbjct  504  SQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAE  563

Query  569  KRLYTVQSSMMTEAGIDAGFTRDLYVALGEPLENGAWAVRVHVKPFVRWIW  619
            KRLY     +MTEA+ID+G+TRDLY ALGE L+NGAWAVR+  KPFVRWIW
Sbjct  564  KRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

382) ccmF in NC_017549


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  431 bits (1624),  Expect = 7e-122, Method: Compositional matrix adjust.
 Identities = 339/591 (58%), Positives = 451/591 (77%), Gaps = 7/591 (1%)

Query  30   RGDRQWMSLARPAAWGQFAFLAFAFGCLTWAFLRDDFSVAYVAGNSNSALPWYYKFSAVW  89
            RGD + M+ A   AW  F  +A AF  L  AF+ +DF+VAYVAGNSN+ LP  Y+ +A W
Sbjct  30   RGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATW  89

Query  90   GAHEGSLLLWALILGGWTFAVSIFSRQLPEVMLARVLAVMGMISTGFLLFLIITSNPFSR  149
            GAHEGSLLLW L+++GWT+AV++FSRQ+P  ++ARVLAVMGM+ +GFL F+++TS PF+R
Sbjct  90   GAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFAR  149

Query  150  LLPQTPMDGNDLNPLLQDVGLIVHPPMLYMGYVgfsvafafaiaallggrlDAAWARWSR  209
             LP  P++G DLNPLLQD GLI HPP+LYMGYVGFSVAFAFAIAALL+GRLD+A +R +R
Sbjct  150  TLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFAR  209

Query  210  PWTLVAWAFLGIGIVLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHSLAVTEKR  269
            PWTL AW FL +GIVLGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS+AVTE+R
Sbjct  210  PWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQR  269

Query  270  GVFKSWTVllaiaafslsllGTFLVRSGVLTSVHAFASDPERGVFILAFLLLVVGGSLTL  329
            + FK+WT+LL+I AFSL LLGTFLVRSGVL SVHAFASDP RG+FILAF++LV GGSL L
Sbjct  270  AGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLL  329

Query  330  FALRAPVVKSQVGFALWSRETllllnnlvlvvAASMILLGTLYPLLLDALSGAKLSVGPP  389
            FA+R+  V+S+V  ALWSRE+LLL NN++L+ A  ++LLGTL PL+   L+ + +SVG P
Sbjct  330  FAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEP  389

Query  390  YFNamflplmaalmaalavgvlvRWKDTPSRWLLGMLTPVLvasavmaaagsmYFGDFNW  449
            +FN+MF  LM ++   L+VG LVRW    +R +  +L + +V++ V++   +  + D   
Sbjct  390  FFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKII  449

Query  450  AVLAVFL-LSAWVVLAGFRDFLDKTRHKGVLAGARSLTRSYWGMQLAHLGIAVCAIGIVL  508
            A+ AV + ++ W+ + +  + +++  +     G+++ + SYWGM  AHLG+AV   GI +
Sbjct  450  AMTAVGMAMACWIAVLAVAEAVQRVSR-----GTKT-SLSYWGMVAAHLGLAVTITGIAF  503

Query  509  SSQYSAQRDLRMSPGDTVELGGYHFLFDGAKHHEGPNYTSDKGSIHVSRDGKEIATLHPE  568
            S +YS +RD+RM +GD+V + +Y+F F   ++  GPNY ++ + I V+R+G   A LH+E
Sbjct  504  SQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAE  563

Query  569  KRLYTVQSSMMTEAGIDAGFTRDLYVALGEPLENGAWAVRVHVKPFVRWIW  619
            KRLY     +MTEA+ID+G+TRDLY ALGE L+NGAWAVR+  KPFVRWIW
Sbjct  564  KRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

383) Sbal223_4021 in NC_011663


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  431 bits (1623),  Expect = 7e-122, Method: Compositional matrix adjust.
 Identities = 322/649 (50%), Positives = 466/649 (72%), Gaps = 21/649 (3%)

Query  1    MIPELGHFALIIGVAFAFLLISVPLIGVARKDQYLVR----YAWPLTYGMFFFITVSVVV  56
            M+PE GH  L ++++ A+LL   PL GVAR D  ++     +AW L    F+ ++ +  V
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLL----FICVAGAFFV  56

Query  57   LAYSFAVDDFSVAYVAHHSNSQLPIFFKISAVWGGHEGSLLFWVFALSTWAAAVALFSKG  116
            L  +F V+DF+VAYVA +SN+QLP+ ++++A WG+HEGSLL+WV+ +S W+ AVA+FS+ 
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQ  116

Query  117  LEEVFTARVLAVLALIVIGFSLFMLLTSSPFERLFPI-PAEGRDLNPMLQDVGLIFHPPM  175
            +   + ARVLAV++++  GF  F+L+TS+PF R +P  P EGRDLNP+LQD GLIFHPP+
Sbjct  117  VPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPL  176

Query  176  LYLGYVGFSVSFAFAIAALMSGRLDSAWARWTRPWTLAAWIFLTGGIALGSWWAYYELGW  235
            LY+GYVGFSV+FAFAIAAL+SGRLDSA +R +RPWTLAAW+FLT GI LGS WAYYELGW
Sbjct  177  LYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGW  236

Query  236  GGWWFWDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVllsifafslsllGTFIVRS  295
            GGWWFWDPVENASFMPWL GTAL+HS+ VTE+R++F+ WT+LLSI AFSL LLGTF+VRS
Sbjct  237  GGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRS  296

Query  296  GVLTSVHSFAADPSRGMFIllllglaiggsltlFAFRASEMSSPARFELKSKETMLLVCN  355
            GVL SVH+FA+DP+RGMFIL ++ L  GGSL LFA R+  + S     L S+E++LL  N
Sbjct  297  GVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNN  356

Query  356  vlltvaagtvllgtlYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFGFMGIGPIIRWKK  415
            VLL  A   VLLGTL PL+   LG+G ISVG P+FN++F  +++ +  ++G+GP++RW +
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  416  SKAGELKRQLLIPAMVAAAIGIVTPFIVDGVFNIWVAFGIAAASWIILATARAAYNMVKS  475
             ++ ++++ L  + + +  ++++ P ++++ +    A G+A A WI          ++  
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI---------AVLAV  467

Query  476  KEGDISISRMGRSQL---GMIFAHLGIAVSVIGATMVSNYSIEKSVRMGPGISQELAGYT  532
             E+   +SR  ++ L   GM+ AHLG+AV++ G +   NYS+E+ VRM +G S  + +Y 
Sbjct  468  AEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  533  FKYLETKNVVGPNYTAMQGQIEVYKGDELLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDL  592
            F + E +++ GPNY +  + I V + +E  ++L +++R YN   M MTEA+ID GL RDL
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  593  YVTMGDPITSTEFAVRLNYKPFVRWLWfgaifmmiggffaaSDKRYRAK  641
            Y ++G+ + +   AVRL YKPFVRW+W G+++M +GG++  +D RYR +
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

384) ccmF in NC_009656


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  431 bits (1622),  Expect = 9e-122, Method: Compositional matrix adjust.
 Identities = 335/591 (57%), Positives = 443/591 (75%), Gaps = 7/591 (1%)

Query  30   RGDRQWMSLARPAAWGQFAFLAFAFGCLTWAFLRDDFSVAYVAGNSNSALPWYYKFSAVW  89
            RGD + M+ A   AW  F  +A AF  L  AF+ +DF+VAYVAGNSN+ LP  Y+ +A W
Sbjct  30   RGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATW  89

Query  90   GAHEGSLLLWALILGGWTFAVSIFSRQLPEVMLARVLAVMGMISTGFLLFLIVTSNPFSR  149
            GAHEGSLLLW L+++GWT+AV++FSRQ+P  ++ARVLAVMGM+ +GFL F++ TS PF+R
Sbjct  90   GAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFAR  149

Query  150  LLPQTPMDGNDLNPLLQDVGLIVHPPMLYMGYVgfsvafafaiaallggrlDAAWARWSR  209
             LP  P++G DLNPLLQD GLI HPP+LYMGYVGFSVAFAFAIAALL+GRLD+A +R +R
Sbjct  150  TLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFAR  209

Query  210  PWTLVAWAFLGVGIVLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHSLAVTEKR  269
            PWTL AW FL +GIVLGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS+AVTE+R
Sbjct  210  PWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQR  269

Query  270  GVFKSWTVllaiaafslsllGTFLVRSGVLTSVHAFASDPERGVFILAFLLLVVGGSLTL  329
            + FK+WT+LL+I AFSL LLGTFLVRSGVL SVHAFASDP RG+FILAF++LV GGSL L
Sbjct  270  AGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLL  329

Query  330  FALRAPVVKSQVGFALWSRETllllnnlvlvvAASMILLGTVYPLLLDALSGAKLSVGPP  389
            FA+R+  V+S+V  ALWSRE+LLL NN++L+ A  ++LLGT+ PL+   L+ + +SVG P
Sbjct  330  FAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEP  389

Query  390  YFNamflplmaalmaalavgvlvRWKDTPSRWLLGML-TPvlvvsavlaaaGSMLFGDFN  448
            +FN+MF  LM ++   L+VG LVRW    +R +  +L ++V+    +      +L + + 
Sbjct  390  FFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKII  449

Query  449  WAVLAVFLLSAWVVLAGFRDFLDKTRHKGVLAGARSLSRSYWGMQLAHLGIAVCAIGIVL  508
                    ++ W+ + +  + +++  +     G+++ S SYWGM  AHLG+AV   GI +
Sbjct  450  AMTAVGMAMACWIAVLAVAEAVQRVSR-----GTKT-SLSYWGMVAAHLGLAVTITGIAF  503

Query  509  SSQYSAQRDLRMSPGDTVELGGYHFLFDGAKHHEGPNYTSDKGSIHVSRDGKEIATLHPE  568
            S +YS +RD+RM +GD+V + +Y+F F   ++  GPNY ++ + I V+R+G   A LH+E
Sbjct  504  SQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAE  563

Query  569  KRLYTVQSSMMTEAGIDAGFTRDLYVALGEPLENGAWAVRVHVKPFVRWIW  619
            KRLY     +MTEA+ID+G+TRDLY ALGE L+NGAWAVR+  KPFVRWIW
Sbjct  564  KRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

385) Daro_3996 in NC_007298


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  430 bits (1618),  Expect = 2e-121, Method: Compositional matrix adjust.
 Identities = 330/604 (55%), Positives = 460/604 (77%), Gaps = 16/604 (2%)

Query  53   SFACLVQAFVTNDFSVVYVAQHSNSLLPIQYRVAAVWGGHEGSLLLWMLFLTWWAFSVAM  112
            +F  LV+AFV NDF+V YVA +SN+ LP+ YRVAA WG+HEGSLLLW+L+++ W+++VA+
Sbjct  53   AFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAV  112

Query  113  LSKQLPETMVARVLGTLGLVAFGFMLFILITSNPFERLLPA-AAEGRDLNPLLQDPGLVI  171
            +S+Q+P  +VARVL+ +G+V  GF+ FIL+TS PF R LPA + EGRDLNPLLQDPGL++
Sbjct  113  FSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIF  172

Query  172  HPPMLYMGYVGFSVAFAFAIAALLSGQLDAAWARWSRPWTMAAWCFLTMGIALGSWWAYY  231
            HPP+LYMGYVGFSVAFAFAIAALLSG+LD+A +R +RPWT+AAW FLT+GI LGS WAYY
Sbjct  173  HPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYY  232

Query  232  ELGWGGWWFWDPVENASFMPWLVGTALIHSLAVTEKRGSFKNWTVllaisafslsllGTF  291
            ELGWGGWWFWDPVENASFMPWL GTAL+HS+AVTE+R++FK WT+LL+I AFSL LLGTF
Sbjct  233  ELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTF  292

Query  292  LVRSGVLTSVHAFATDPRRGIFILIFLVAVIGSSLALFAWRAPKVGLGGRFGLISRESll  351
            LVRSGVL SVHAFA+DP RG+FIL F+V V G+SL LFA R+ +V      +L SRESLL
Sbjct  293  LVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLL  352

Query  352  ltnnvllvvacatvllgtlYPLLIDALGIGKISVGPPYFNAVFVPVMAPVLFLMGIAPFA  411
            L NNVLL+ A   VLLGTL PL+   LG+G ISVG P+FN++F  +M P  +L+G++P+ 
Sbjct  353  LGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLV  412

Query  412  RWKEASIPDITRIVRWamvaaavvaiaLP-LIYGHWSTLIALGILLAAWVAITTVITFVE  470
            RW      +I ++++ A+V++ V+++ LP L+ +   ++ A+G+ +A W+A+ +V   V+
Sbjct  413  RWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQ  472

Query  471  RVQHTRAGQSFLSTAVKQPRSFVGMCLAHFGIAVFVVGVTMVNSFQDEKDIKMAPGETTT  530
            RV +          + K + S+ GM  AH+G+AV + G++  +++  E+D++M +G++ T
Sbjct  473  RVSR----------GTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVT  522

Query  531  VAGYSFTFNGVKSVQGPNYTAAQGDFDLAVDGKFMRKMNPEKRNYASSGMPMTEAAIDAG  590
            + +Y FTF  V+ + GPNY ++ + ++++ +G     +++EKR Y +S M MTEAAID+G
Sbjct  523  IHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGG  582

Query  591  FLRDVYVSLGEPIDRDKPEAEWAVRVYYKPFVDWIWGGCFlmalggllallDRRYRVKSR  650
            + RD+Y +LGE +D    ++ WAVR+YYKPFV WIW+G +LMALGGLL L D RYR +  
Sbjct  583  LTRDLYAALGEELD----NGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKP  638

Query  651  VSAT  654
            ++ +
Sbjct  639  LPEA  642

386) Pnec_1378 in NC_010531


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  430 bits (1618),  Expect = 2e-121, Method: Compositional matrix adjust.
 Identities = 345/634 (55%), Positives = 474/634 (75%), Gaps = 3/634 (0%)

Query  1    MIPEFGHYALVLALCIASIQGVLPLLGAHFGRRDWLALARSSAQTVflllaiafgilaWS  60
            M+PE+GH  L LAL +A + +V PL G   G    +A A   A  +F+ +A AF +L  +
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FYVNDFSVLYVAEHSNSQLPVIYRLGAVWGGHEGSLLLWIFLLATWTILVAQLSKALDDF  120
            F VNDF+V YVA +SN+QLPV YR++A WG+HEGSLLLW++L++ WT+ VA +S+ +   
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MVARVIgvlglvtsglllfvlttsNPFERLLPA-AQDGRSLNPLLQDPGLVFHPPMLYMG  179
            +VARV++V+G+V +G+L F+L TS PF R LPA + +GR LNPLLQDPGL+FHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVAFAFAIASLLSGRLDAAWARWSRPWTTAAWVFLTLGIALGSWWAYYELGWGGWW  239
            YVGFSVAFAFAIA+LLSGRLD+A +R +RPWT AAWVFLTLGI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASFIPWLVGTALLHSLAVTEKRGGFKSWTVLLAITAFSLSLLGTFLVRSDVLT  299
            FWDPVENASF+PWL GTALLHS+AVTE+R+GFK+WT+LL+I AFSL LLGTFLVRS+VL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFATDPKRgifilillslvvgsslllYAWRAPKSTMGGKFSLSSREIFILLGNIFLV  359
            SVHAFA+DP RG+FIL ++ LV G+SLLL+A R+ +     + +L SRE ++L  N++L+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  VSAGSVLLGTLYPLLIDALHLGKISVGPPYFNSVFVPIMVPLLTLMGIGPWASWKQSNLL  419
             +   VLLGTL PL+   L LG ISVG P+FN++F  +MVP+  L+G+GP   W +    
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  AIIKRLWLaaavavvaGIAIP-LIMGQFTWLAGMGFMLAFWIIASGCMQII-RQAKAGKP  477
             I K LW A   ++V ++ +P L+ +++  ++++G  +A WI   +  + + R +++ K 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  478  TRSFIGMQVAHLGIAVFVIGVTMVGAYQEEKDVRMSAGDTVTVGGYQIQLQSVNAERGPN  537
            + S+ GM  AHLG+AV + G++    Y  E+DVRM AGD+VT+ +Y++ ++ V    GPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  538  YQAMRGTFFLSRDGSPQISLYPEKRSYFSSTMPMTEAAIDAGLTRDIYVSLGEELGDQSW  597
            Y++  + + ++R+G P+  L +EKR Y +S M MTEAAID+GLTRD+Y +LGEEL++ +W
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  598  VVRVYYKPFVDWIWGGCLLMALGGVLAMSDKRYR  631
             VR+YYKPFV WIW+G LLMALGG+L ++D RYR
Sbjct  601  AVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

387) Dsui_1172 in NC_016616


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  429 bits (1616),  Expect = 3e-121, Method: Compositional matrix adjust.
 Identities = 372/654 (57%), Positives = 490/654 (75%), Gaps = 24/654 (3%)

Query  1    MIPELGHFALILAFCVALVQGVLPLVGAHQGRTPWvlvarpaamaqallvafaFGCLTWA  60
            M+PE GH  L LA+ VAL+ +V PL G  +G +  +  A   A    + VA AF  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVQSDFSVVYVAQHSNTLLPTLYKFSAVWGGHEGslllwalmlslwTFAVAALSRQLPEP  120
            FV +DF+V YVA +SNT LP  Y+ +A WG+HEGSLLLW L++S WT+AVA +SRQ+P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MvarvlgvlglvaagfllfilvTSNPFERLLPA-AQEGRDLNPLLQDPGLVFHPPMLYMG  179
            +VARVL+V+G+V AGFL FIL TS PF R LPA + EGRDLNPLLQDPGL+FHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVAYAFAVAALLSGQLDAAWARWSRPWTTSAWIFLTLGIALGSWWAYYELGWGGWW  239
            YVGFSVA+AFA+AALLSG+LD+A +R +RPWT +AW+FLTLGI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASFMPWLVGTALIHSLAVTEKRGSFKNWTVMLAIGAFSLSLLGTFLVRSGVLT  299
            FWDPVENASFMPWL GTAL+HS+AVTE+R++FK WT++L+I AFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFATDPTRGIFILAFLVVVIGSSLVLFAWRAPKVGLGGRFSLVSRESFLLTNNVLLV  359
            SVHAFA+DP+RG+FILAF+V+V G+SL+LFA R+ +V      +L SRES+LL NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  VGCGTVFLGTLYPLLIDALNAGKISVGPPYFNTVFAPLMVPVLFLMGVAPFARWKEASLA  419
             +   V+LGTL PL+   L  G ISVG P+FNT+F+ LMVP  +L+GV+P+ RW      
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  EIARLLRWafaaavlvgvavPFIYGTWHTAV-AVGILVAAWITLTAVLNFLQRV-RATRG  477
            +I +LL+ A  ++++++V +P +      A+ AVG+ +A WI++ AV + +QRV R+T+ 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  478  DLSFAAAVFKQPRSFWGMHLAHIGvavfvvgvtlvKNYEVEKDVKMEPGDSVHLVGYEFR  537
             L           S+WGM  AH+G+AV + G+++ +NY VE+DV+M +GDSV + +Y F 
Sbjct  481  SL-----------SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  538  FIGVHQVEGPNYLALRGEVELL---KDGKLDKVLHPEKRNYASSAMPMTEAAIDAGLTRD  594
            F  V+++ GPNY   RG V L+   ++G  + VLH+EKR Y +S M MTEAAID+GLTRD
Sbjct  530  FREVRDITGPNY---RGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  595  VYVSLGEPINKSQPEGAWAVRVYYKPFVDWIWGGCLLMSLGGLIAIADRRYRVK  648
            +Y +LGE ++    +GAWAVR+YYKPFV WIW+G LLM+LGGL+ +AD RYR +
Sbjct  587  LYAALGEELD----NGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

388) Shewana3_0234 in NC_008577


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  428 bits (1613),  Expect = 4e-121, Method: Compositional matrix adjust.
 Identities = 322/649 (50%), Positives = 465/649 (72%), Gaps = 21/649 (3%)

Query  1    MIPELGHFSLIIGVAFAFLLVSVPLIGVARKDQYLVR----YAWPLTYGMFFFIALSVVS  56
            M+PE GH  L ++++ A+LL   PL GVAR D  ++     +AW L    F+ +A +   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLL----FICVAGAFFV  56

Query  57   LGYSFAVDDFSVAYVAHHSNSQLPIFFKIAAVWGGHEGSLLFWVFALSTWAASVALFSKG  116
            L  +F V+DF+VAYVA +SN+QLP+ +++AA WG+HEGSLL+WV+ +S W+ +VA+FS+ 
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQ  116

Query  117  LEEVFTARVLAVLALIVIGFSLFMLLTSSPFERLFPM-PAEGRDLNPMLQDVGLIFHPPM  175
            +   + ARVLAV++++  GF  F+L+TS+PF R +P  P EGRDLNP+LQD GLIFHPP+
Sbjct  117  VPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPL  176

Query  176  LYLGYVGFSVSFAFAIAALMSGHLDSAWARWSRPWTLAAWIFLTGGIALGSWWAYYELGW  235
            LY+GYVGFSV+FAFAIAAL+SG+LDSA +R +RPWTLAAW+FLT GI LGS WAYYELGW
Sbjct  177  LYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGW  236

Query  236  GGWWFWDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVllsifafslsllGTFIVRS  295
            GGWWFWDPVENASFMPWL GTAL+HS+ VTE+R++F+ WT+LLSI AFSL LLGTF+VRS
Sbjct  237  GGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRS  296

Query  296  GVLTSVHSFAADPSRGMFIllllglaiggsltlFAFRASEMSSPARFELKSKETMLLVCN  355
            GVL SVH+FA+DP+RGMFIL ++ L  GGSL LFA R+  + S     L S+E++LL  N
Sbjct  297  GVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNN  356

Query  356  vlltvaagtvllgtlYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFGFMGVGPIIRWKK  415
            VLL  A   VLLGTL PL+   LG+G ISVG P+FN++F  +++ +  ++GVGP++RW +
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  416  SKAGELKRQLLVPALVSAAIGIVTPFIVDGAFNAWVACGIAAASWIVLATARAAYNIVKP  475
             ++ ++++ L  + + +  ++++ P ++++ + A  A G+A A WI          ++  
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI---------AVLAV  467

Query  476  KEGEVSVARMGRSEL---GMILAHLGIAVSVIGATMVSNYSVEKSVRMGPGVSQELAGYT  532
             E+   V+R  ++ L   GM+ AHLG+AV++ G +   NYSVE+ VRM +G S  + +Y 
Sbjct  468  AEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  533  FKYLETKNVVGPNYTAQQGQIEIYKGDKLLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDL  592
            F + E +++ GPNY +  + I + + +   ++L +++R YN   M MTEA+ID GL RDL
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  593  YVTMGDPISSTEFAVRLNYKPFVRWLWFGAIFMMVGGFFAASDKRYRSK  641
            Y ++G+ + +   AVRL YKPFVRW+W G+++M +GG++  +D RYR +
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

389) ccmF in NC_005773


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  428 bits (1612),  Expect = 6e-121, Method: Compositional matrix adjust.
 Identities = 362/642 (57%), Positives = 478/642 (75%), Gaps = 7/642 (1%)

Query  1    MIPELGHLAMILALGFALVQAIIPLIGAWRGDRLWMSLARPAAWGQFSFLIFAFGCLTYA  60
            M+PE GH  + LALG AL+ ++ PL G  RGD   M+ A   AW  F  +  AF  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FMTDDFSVAYVAQNSNTALPWYYKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQV  120
            F+ +DF+VAYVA NSNT LP  Y+ +A WGAHEGSLLLW L+++GWT+AV+VFSRQ+P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MLARVLAVMGMISLGFLLFLILTSNPFARLLPQMPANGRDLNPLLQDIGLIVHPPMLYMG  180
            ++ARVLAVMGM+  GFL F+++TS PFAR LP  P +GRDLNPLLQD GLI HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVgfsvafafaiaallggrlDAAWARWSRPWTLVAWAFLGVGISLGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIAALL+GRLD+A +R +RPWTL AW FL +GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLT  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPARGVFILMFLLVVVGGSLTLFAIRAPVVKSHVGFGLWSRETlllgnnlllV  360
            SVHAFASDPARG+FIL F+++V GGSL LFA+R+  V+S+V  +LWSRE+LLLGNN+LL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  TAASMILLGTLYPLVMDAMSGAKMSVGPPYFNalfvplmglllvvmavgvlvRWKDTPLK  420
            +A  ++LLGTL PLV   ++ + +SVG P+FN++F  LM  + ++++VG LVRW     +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  WLLGMlapvlvgsavlavlaallMGDFQWAVLATFM-LAAWVLLAGVRDLFDKTRHKGLL  479
             +  +L + +V + VL+VL + L+ D   A+ A  M +A W+ + +V +  ++  +    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT--  478

Query  480  RGALGLTRSYWGMQLAHLGIVVCALGVVLSSQNSAERDLRMAPGESTELGGYVFVFESAK  539
            + +L    SYWGM  AHLG+ V   G+ +S + S ERD+RM +G+S  + +Y F F   +
Sbjct  479  KTSL----SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  540  HYEGPNFTSDRGTVRVLHNGAQITELHPEKRLYSVQQSMMTEAGIDAGFSRDLYVALGEP  599
            +  GPN+ ++ + + V ++G   + LH+EKRLY+  + +MTEA+ID+G++RDLY ALGE 
Sbjct  535  DITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  600  LGNGAWAVRVHVKPFVRWIWlgglltglggvlAAFDRRYRTR  641
            L+NGAWAVR+  KPFVRWIW GGLL +LGG+L   D RYR R
Sbjct  595  LDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

390) A458_13515 in NC_018028


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  428 bits (1611),  Expect = 6e-121, Method: Compositional matrix adjust.
 Identities = 343/620 (56%), Positives = 458/620 (74%), Gaps = 7/620 (1%)

Query  1    MIPELGHLAMILALCLAVVQATLPLIGAWRGDRQWMGLAQPAAWGQFAFLGFSFACLTYA  60
            M+PE GH  + LAL +A++ +  PL G  RGD + M+ A   AW  F  ++ +F  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FMVDDFSVAYVAHNSNSALPWYYKFSAVWGAHEGSLLLWAFILAGWTFAVAIFSRQLPED  120
            F+V+DF+VAYVA NSN+ LP  Y+ +A WGAHEGSLLLW ++++GWT+AVA+FSRQ+P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MLARVLGVMglisigfllfliVTSNPFERLLPQVPMDGRDLNPLLQDFGLIVHPPMLYMG  180
            ++ARVL+VMG++  GFL F++ TS PF R LP  P++GRDLNPLLQD GLI HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVgfsvafafaiaallggrlDAAWARWSRPWTLVAWAFLGLGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIAALL+GRLD+A +R +RPWTL AW FL LGI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLT  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFATDPERGVFILVFLLMVVGGSLTLFAMRAPVVKSQVGFGLWSRETlllvnnlllv  360
            SVHAFA+DP RG+FIL F+++V GGSL LFA+R+  V+S+V  +LWSRE+LLL NN+LL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  vATAMILLGTLYPLLLDALSGAKLSVGPPYFNAMFVPLIGALMLTLGVGILVRWKDTPLK  420
             A  ++LLGTL PL+   L+ + +SVG P+FN+MF  L+ ++ L LGVG LVRW     +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  WLLGML-TPVLITsvvlgglgsllfgDFNwavlavsllaawvvIAGVRDLLDKTRHKGLF  479
             +  +L ++V+ T V+   L  LL + +         +A W+ + +V + +++       
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  480  KGMRSLAPSYWGMHLAHLGLAVCAIGVVLTSHQSAERDLRLAPGESLSLGGYEFVFEGAV  539
            +G ++ + SYWGM  AHLGLAV   G+ ++ + S ERD+R+ +G+S+++ +Y F F    
Sbjct  476  RGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  540  HHEGPNFTSDKATIRVLDGDKQIATLHPEKRLYTVQQMPMTEAGIDAGFTRDLYVALGEP  599
            +  GPN+ ++ A I V   +   A LH+EKRLY   +M MTEA+ID+G+TRDLY ALGE 
Sbjct  535  DITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  600  LGDGAWAVRVHIKPFVRWIW  619
            L++GAWAVR+  KPFVRWIW
Sbjct  595  LDNGAWAVRLYYKPFVRWIW  614

391) ccmF in NC_009434


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  427 bits (1608),  Expect = 1e-120, Method: Compositional matrix adjust.
 Identities = 343/620 (56%), Positives = 459/620 (75%), Gaps = 7/620 (1%)

Query  1    MIPELGHLAMILALCLAVVQATLPLIGAWRGDRQWMGLAQPAAWGQFAFLGFSFACLTYA  60
            M+PE GH  + LAL +A++ +  PL G  RGD + M+ A   AW  F  ++ +F  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FMVDDFSVAYVAHNSNSALPWYYKFSAVWGAHEGSLLLWAFILAGWTFAVAIFSRQLPED  120
            F+V+DF+VAYVA NSN+ LP  Y+ +A WGAHEGSLLLW ++++GWT+AVA+FSRQ+P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MLARVLGVMglisigfllfliVTSNPFERLLPQVPMDGRDLNPLLQDFGLIVHPPMLYMG  180
            ++ARVL+VMG++  GFL F++ TS PF R LP  P++GRDLNPLLQD GLI HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVgfsvafafaiaallggrlDAAWARWSRPWTLVAWAFLGLGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIAALL+GRLD+A +R +RPWTL AW FL LGI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLT  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFATDPERGVFILVFLLMVVGGSLTLFALRAPVVKSQVGFGLWSRETlllvnnlllv  360
            SVHAFA+DP RG+FIL F+++V GGSL LFA+R+  V+S+V  +LWSRE+LLL NN+LL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  vATAMILLGTLYPLLLDALSGAKLSVGPPYFNAMFVPLMAALMLTLGVGIMVRWKDTPVK  420
             A  ++LLGTL PL+   L+ + +SVG P+FN+MF  LM ++ L LGVG +VRW     +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  WLLGML-TPVLITsvvlgglgsllfgDFNwavlavsllaawvviasvRDLLDKTRHKGLL  479
             +  +L ++V+ T V+   L  LL + +         +A W+ + +V + +++       
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  480  KGARSLAPSYWGMHLAHLGLAVCAIGVVLTSHQSSERDLRLAPGESLSLGGYEFVFEGAV  539
            +G+++ + SYWGM  AHLGLAV   G+ ++ + S ERD+R+ +G+S+++ +Y F F    
Sbjct  476  RGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  540  HHEGPNFTSDKATIRVFDGDKQIATLHPEKRLYTVQQMPMTEAGIDAGFTRDLYVALGEP  599
            +  GPN+ ++ A I V   +   A LH+EKRLY   +M MTEA+ID+G+TRDLY ALGE 
Sbjct  535  DITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  600  LGDGAWAVRVHIKPFVRWIW  619
            L++GAWAVR+  KPFVRWIW
Sbjct  595  LDNGAWAVRLYYKPFVRWIW  614

392) ccmF in NC_015740


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  427 bits (1608),  Expect = 1e-120, Method: Compositional matrix adjust.
 Identities = 343/620 (56%), Positives = 459/620 (75%), Gaps = 7/620 (1%)

Query  1    MIPELGHLAMILALCLAVVQATLPLIGAWRGDRQWMGLAQPAAWGQFAFLGFSFACLTYA  60
            M+PE GH  + LAL +A++ +  PL G  RGD + M+ A   AW  F  ++ +F  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FMVDDFSVAYVAHNSNSALPWYYKFSAVWGAHEGSLLLWAFILAGWTFAVAIFSRQLPED  120
            F+V+DF+VAYVA NSN+ LP  Y+ +A WGAHEGSLLLW ++++GWT+AVA+FSRQ+P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MLARVLGVMglisigfllfliVTSNPFERLLPQVPMDGRDLNPLLQDFGLIVHPPMLYMG  180
            ++ARVL+VMG++  GFL F++ TS PF R LP  P++GRDLNPLLQD GLI HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVgfsvafafaiaallggrlDAAWARWSRPWTLVAWAFLGLGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIAALL+GRLD+A +R +RPWTL AW FL LGI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLT  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFATDPERGVFILVFLLMVVGGSLTLFALRAPVVKSQVGFGLWSRETlllvnnlllv  360
            SVHAFA+DP RG+FIL F+++V GGSL LFA+R+  V+S+V  +LWSRE+LLL NN+LL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  vATAMILLGTLYPLLLDALSGAKLSVGPPYFNAMFVPLMAALMLTLGVGIMVRWKDTPVK  420
             A  ++LLGTL PL+   L+ + +SVG P+FN+MF  LM ++ L LGVG +VRW     +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  WLLGML-TPVLITsvvlgglgsllfgDFNwavlavsllaawvviasvRDLLDKTRHKGLL  479
             +  +L ++V+ T V+   L  LL + +         +A W+ + +V + +++       
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  480  KGARSLAPSYWGMHLAHLGLAVCAIGVVLTSHQSSERDLRLAPGESLSLGGYEFVFEGAV  539
            +G+++ + SYWGM  AHLGLAV   G+ ++ + S ERD+R+ +G+S+++ +Y F F    
Sbjct  476  RGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  540  HHEGPNFTSDKATIRVFDGDKQIATLHPEKRLYTVQQMPMTEAGIDAGFTRDLYVALGEP  599
            +  GPN+ ++ A I V   +   A LH+EKRLY   +M MTEA+ID+G+TRDLY ALGE 
Sbjct  535  DITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  600  LGDGAWAVRVHIKPFVRWIW  619
            L++GAWAVR+  KPFVRWIW
Sbjct  595  LDNGAWAVRLYYKPFVRWIW  614

393) ccmF in NC_017532


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  427 bits (1607),  Expect = 1e-120, Method: Compositional matrix adjust.
 Identities = 343/620 (56%), Positives = 459/620 (75%), Gaps = 7/620 (1%)

Query  1    MIPELGHLAMILALCLAVVQATLPLIGAWRGDRQWMGLAQPAAWGQFAFLGFSFACLTYA  60
            M+PE GH  + LAL +A++ +  PL G  RGD + M+ A   AW  F  ++ +F  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FMVDDFSVAYVAHNSNSALPWYYKFSAVWGAHEGSLLLWAFILAGWTFAVAIFSRQLPED  120
            F+V+DF+VAYVA NSN+ LP  Y+ +A WGAHEGSLLLW ++++GWT+AVA+FSRQ+P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MLARVLGVMglisigfllfliVTSNPFERLLPQVPMDGRDLNPLLQDFGLIVHPPMLYMG  180
            ++ARVL+VMG++  GFL F++ TS PF R LP  P++GRDLNPLLQD GLI HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVgfsvafafaiaallggrlDAAWARWSRPWTLVAWAFLGLGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIAALL+GRLD+A +R +RPWTL AW FL LGI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLT  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFATDPERGVFILVFLLMVVGGSLTLFALRAPVVKSQVGFGLWSRETlllvnnlllv  360
            SVHAFA+DP RG+FIL F+++V GGSL LFA+R+  V+S+V  +LWSRE+LLL NN+LL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  vATAMILLGTLYPLLLDALSGAKLSVGPPYFNAMFVPLMAALMLTLGVGIMVRWKDTPVK  420
             A  ++LLGTL PL+   L+ + +SVG P+FN+MF  LM ++ L LGVG +VRW     +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  WLLGML-TPVLITsvvlgglgsllfgDFNwavlavsllaawvviasvRDLLDKTRHKGLL  479
             +  +L ++V+ T V+   L  LL + +         +A W+ + +V + +++       
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  480  KGARSLAPSYWGMHLAHLGLAVCAIGVVLTSHQSSERDLRLAPGESLSLGGYEFVFEGAV  539
            +G+++ + SYWGM  AHLGLAV   G+ ++ + S ERD+R+ +G+S+++ +Y F F    
Sbjct  476  RGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  540  HHEGPNFTSDKATIRVFDGDKQIATLHPEKRLYTVQQMPMTEAGIDAGFTRDLYVALGEP  599
            +  GPN+ ++ A I V   +   A LH+EKRLY   +M MTEA+ID+G+TRDLY ALGE 
Sbjct  535  DITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  600  LGDGAWAVRVHIKPFVRWIW  619
            L++GAWAVR+  KPFVRWIW
Sbjct  595  LDNGAWAVRLYYKPFVRWIW  614

394) ccmF in NC_020888


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  427 bits (1609),  Expect = 1e-120, Method: Compositional matrix adjust.
 Identities = 344/640 (54%), Positives = 476/640 (75%), Gaps = 4/640 (0%)

Query  7    MVPEFGQLALIFAFVCAAFQVVIPLVGVNRGAPWLMAYARPLATGQalfllislfslaYC  66
            M+PE+G+  L +A+  A +  V PL GV RG +++MA A  +A    + +  ++F L   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  67   FVVDDFSVAYVAANSNTALPTPFKISAVWGAHEGSLLLWVTMLGLWSLAVAWLSKSLPID  126
            FVV+DF+VAYVA+NSNT LP  ++++A WGAHEGSLLLWV +++ W+LAVA +S+ +P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  127  MIARVLAVMGMVSVGFILFTLETSNPFSRHLPSAPAEGGDLNPLLQDFGLIVHPPTLYMG  186
            ++ARVLAVMGMV  GF+ F L TS PF+R LP+ P EG DLNPLLQD GLI HPP LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  187  YVGLSVAFAFAIAALMSGRLDAAWARWSRPWTTAAWIFLTVGIALGSWWAYYELGWGGWW  246
            YVG+SVAFAFAIAAL+SGRLD+A +R +RPWT AAW+FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  247  FWDPVENASLMPWLVATALLHSLAVTEKRGLFKSWTVllaifafslsllGTFLVRSGVLT  306
            FWDPVENAS+MPWL +TALLHS+AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  307  SVHAFASDPERGIFILALLGICVGGSLLLYAIKAPTVASTGRFELVSREMFlllnnlllv  366
            SVHAFASDP RG+FILA++ +  GGSLLL+A+++  V S     L SRE +LL NN+LL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  367  vialailIGTLYPLVYDFMGLGKLSVGAAWFNTMFVPLSvglavvvgagaMSRWKVDSLG  426
               L +L+GTL PLV   +GLG +SVG + FNTMF  L V +A+++G G++ RW  D   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  427  RIGTMLWPaaiaaivfaiiTPMIISGELKGMVVLGLSVSIWLTLATFIDVWKKSRGQITR  486
             I  +LW+A ++++V++++ P ++ + + +M  +G++++ W+++ +  +    +  +++R
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAE----AVQRVSR  476

Query  487  IPNLGMSYLGMILAHLGVAVTIVGVTMVANYSTEKSVRIAPGERETLGDYVFEFAQGGHI  546
              + ++SY GM+ AHLG+AVTI G++   NYS E+ VR+ +G+  T+ DY F F +  +I
Sbjct  477  GTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDI  536

Query  547  TGPNYTSDAVRFNVYEDDKLISTLMAEKRRYTARGSVMTEAAIDVSLFRDLYVSMGEPLD  606
            TGPNY ++   + V  ++   + L AEKR Y +   VMTEAAID +L RDLY ++GE LD
Sbjct  537  TGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELD  596

Query  607  NGAWGMRLQVKPFMRWVWLGAIFMACGGFLAMLDKRYRRR  646
            NGAW++RL  KPF+RW+W G+++MA GG+L + D RYRRR
Sbjct  597  NGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

395) Psest_1759 in NC_019936


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  427 bits (1606),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 342/620 (56%), Positives = 458/620 (74%), Gaps = 7/620 (1%)

Query  1    MIPELGHLAMILALCLAVVQATLPLIGAWRGDRQWMGLAQPAAWGQFAFLGFSFACLTYA  60
            M+PE GH  + LAL +A++ +  PL G  RGD + M+ A   AW  F  ++ +F  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FMVDDFSVAYVAHNSNSALPWYYKFSAVWGAHEGSLLLWAFILAGWTFAVAVFSRQLPED  120
            F+V+DF+VAYVA NSN+ LP  Y+ +A WGAHEGSLLLW ++++GWT+AVAVFSRQ+P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MLARVLGVMglisigfllfliVTSNPFERLLPQVPVDGRDLNPLLQDFGLIVHPPMLYMG  180
            ++ARVL+VMG++  GFL F++ TS PF R LP  PV+GRDLNPLLQD GLI HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVgfsvafafaiaallggrlDAAWARWSRPWTLVAWAFLGLGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIAALL+GRLD+A +R +RPWTL AW FL LGI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLT  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFATDPERGVFILVFLLMVVGGSLTLFALRAPVVKSQVGFGLWSRETlllvnnlllv  360
            SVHAFA+DP RG+FIL F+++V GGSL LFA+R+  V+S+V  +LWSRE+LLL NN+LL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  vATAMILLGTLYPLLLDALSGAKLSVGPPYFNAMFVPLIGALMVTLGVGILVRWKDTPLK  420
             A  ++LLGTL PL+   L+ + +SVG P+FN+MF  L+ ++ + LGVG LVRW     +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  WLLGML-TPVLITsvvlgglgsllfgDFNwavlavsllaawvviasIRDLLDKTRHKGLL  479
             +  +L ++V+ T V+   L  LL + +         +A W+ + ++ + +++       
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  480  KGVRSLAPSYWGMHLAHLGLAVCAIGVVLTSHQSAERDLRLAPGESLSLGGYEFVFEGAV  539
            +G ++ + SYWGM  AHLGLAV   G+ ++ + S ERD+R+ +G+S+++ +Y F F    
Sbjct  476  RGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  540  HHEGPNFTSDKATVRVLDGDKQIATLHPEKRLYTVQQMPMTEAGIDAGFTRDLYVALGEP  599
            +  GPN+ ++ A + V   +   A LH+EKRLY   +M MTEA+ID+G+TRDLY ALGE 
Sbjct  535  DITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  600  LGDGAWAVRVHIKPFVRWIW  619
            L++GAWAVR+  KPFVRWIW
Sbjct  595  LDNGAWAVRLYYKPFVRWIW  614

396) Hhal_1369 in NC_008789


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  426 bits (1602),  Expect = 4e-120, Method: Compositional matrix adjust.
 Identities = 329/660 (50%), Positives = 485/660 (74%), Gaps = 21/660 (3%)

Query  1    MLGELGNFALILAFCLAVIQSILPLVGTATGDARLMNSGRSLAVGQFVFLLAAYLILTAA  60
            M+ E G+  L LA+ +A++ S+ PL G A GDAR+M S+  +A   F+ + +A+++L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVTNDFSIRYVAENSATAPPLVYKITGVWGGHEGSMLFWVLTLSAWTVAVAVFSRALPRE  120
            FV NDF++ YVA NS T  P+ Y++++ WG+HEGS+L+WVL +S+WT+AVAVFSR +P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MLARVLAVLGMVAVAFIAFTALTSNPFERIFPA-PTEGTDLNPLLQDPGMIIHPPLLFIG  179
            ++ARVLAV+GMV  +F+AF  +TS PF R +PA P EG DLNPLLQDPG+I+HPPLL++G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YTGlavafafavaalIGGRLDAAWARWSRPWTTAAWGFLTLGIGLGSWWAYYELGWGGWW  239
            Y G++VAFAFA+AAL++GRLD+A +R +RPWT AAW FLTLGI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLLPWLTATALIHSLAVTEKRGGFKVWTVMLAIVSFALTILGGFIVRSGVIT  299
            FWDPVENAS++PWL++TAL+HS+AVTE+R+GFK WT++L+I +F+L +LG F+VRSGV+ 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFATDPDRGVFLLAILAVTLLGSLALYAWRAPKVGLGGVFGWYSRESlllannvllv  359
            SVHAFA+DP RG+F+LA++ +   GSL L+A R+ +V      +  SRESLLL+NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  vacaaiaiGTLYPLALDAFDLGKISVGPPYFDAVfmplmlpllfligigPVVSWKQSDPM  419
             A   + +GTL PL    ++LG ISVG P+F+++F  LM+P+ +L+G+GP+V W +  P 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  ETVRQLRWILLVSALIGGV---WPLTMGAWNPLTAFGLGLAAWILLTAGTDLVRRFNRRR  476
            + +R+L W  +V++L+ +V   W L      ++TA G+++A WI + A ++ V+R +R  
Sbjct  421  N-IRKLLWAAVVTTLVLSVLLPWLLEDKI-IAMTAVGMAMACWIAVLAVAEAVQRVSR--  476

Query  477  QQGVATALQAALRPSFFGMHLAHAGLALVVMAIAMVNTYEVERDVRLEPGDTATAGAYQF  536
              G  T+L      S+ GM  AH GLA+ + +IA  + Y VERDVR+ +GD+ T   Y+F
Sbjct  477  --GTKTSL------SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRF  528

Query  537  RMLDSEVVRGPNFDAQQATVEVLNQDGEVIDVLFPQLRFYDSQPQMPMHQASLNRGMTRD  596
               +   + GPN+ +  A + V  ++GE   VL ++ R+Y++ ++M M +A+++ G+TRD
Sbjct  529  TFREVRDITGPNYRGGVALIGV-TRHGEPEAVLHAEKRLYNT-SRMVMTEAAIDGGLTRD  586

Query  597  VYVSLGDDLGGGAWTMRLYYKPYMFWLWTGCllmafggflaaaDRRYRMAGDRRTVSEAN  656
            +Y +LG++L+ GAW++RLYYKP++ W+W+G LLMA+GG+L  AD RYR    R+ ++EA 
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR---RRKPLPEAG  643

397) ccmF in NC_004347


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  425 bits (1599),  Expect = 5e-120, Method: Compositional matrix adjust.
 Identities = 317/649 (49%), Positives = 464/649 (72%), Gaps = 21/649 (3%)

Query  1    MIPELGHFSLIIGVAFAFLLTSVPLIGVARKDQYLVR----YAWPLAYGMFFFIALSVVS  56
            M+PE GH  L ++++ A+LL+  PL GVAR D  ++     +AW L    F+ +A +   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLL----FICVAGAFFV  56

Query  57   LGYSFAVDDFSVAYVAHHSNSQLPIFFKIAAVWGGHEGSLLFWVFALSTWAASVALFSKG  116
            L  +F V+DF+VAYVA +SN+QLP+ +++AA WG+HEGSLL+WV+ +S W+ +VA+FS+ 
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQ  116

Query  117  LEEVFTARVLAVLALIVIGFSLFMLLTSSPFERIFPM-PAEGRDLNPMLQDVGLIFHPPM  175
            +   + ARVLAV++++  GF  F+L+TS+PF R +P  P EGRDLNP+LQD GLIFHPP+
Sbjct  117  VPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPL  176

Query  176  LYLGYVGFSVSFAFAIAALMSGHLDSAWARWSRPWTLAAWVFLTGGIALGSWWAYYELGW  235
            LY+GYVGFSV+FAFAIAAL+SG+LDSA +R +RPWTLAAWVFLT GI LGS WAYYELGW
Sbjct  177  LYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGW  236

Query  236  GGWWFWDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVllsifafslsllGTFIVRS  295
            GGWWFWDPVENASFMPWL GTAL+HS+ VTE+R++F+ WT+LLSI AFSL LLGTF+VRS
Sbjct  237  GGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRS  296

Query  296  GVLTSVHSFAADPSRGMFIllllglaiggsltlFAFRASEMSSPARFELKSKETMLLVCN  355
            GVL SVH+FA+DP+RGMFIL ++ L  GGSL LFA R+  + S     L S+E++LL  N
Sbjct  297  GVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNN  356

Query  356  vlltvaagtvllgtlYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFAFMGVGPIIRWKK  415
            VLL  A   VLLGTL PL+   LG+G ISVG P+FN++F  +++ +  ++GVGP++RW +
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  416  SKAGELKRQLLVPALVSLVIGIVTPFIVDGAFNawvacgiaaaawiilatakaaYSIVKP  475
             ++ ++++ L  + + +LV++++ P ++++ +          A   +  +     +++  
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKI---------IAMTAVGMAMACWIAVLAV  467

Query  476  KDGEVSIARMGRSQL---GMIIAHLGIAVSVIGATMVSNYSVEKSVRMGPGVSQELAGYT  532
             ++   ++R  ++ L   GM+ AHLG+AV++ G +   NYSVE+ VRM +G S  + +Y 
Sbjct  468  AEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  533  FKYLETKNVVGPNYTAQQGQIEIYKGDKLLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDL  592
            F + E +++ GPNY +  + I + + +   ++L +++R YN   M MTEA+ID GL RDL
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  593  YVTMGDPISSTEFAVRLNYKPFVRWLWFGAIFMMVGGFFAASDKRYRSK  641
            Y ++G+ + +   AVRL YKPFVRW+W G+++M +GG++  +D RYR +
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

398) Galf_1768 in NC_014394


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  423 bits (1592),  Expect = 2e-119, Method: Compositional matrix adjust.
 Identities = 358/655 (55%), Positives = 480/655 (74%), Gaps = 21/655 (3%)

Query  1    MIPELGHFSLIVALCLAIVLGVLPIVGAARNNPVLMGVARPLAYGQLLFIGLA--FATLA  58
            M+PE GH  L +AL +A++L+V P+ G AR ++ +M+ A    ++ LLFI +A  F  L 
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAG--VFAWLLFICVAGAFFVLV  58

Query  59   YAFLGNDFSVLYVAQHSNSQLPGQYRFAAIWGGHEGslllwalllsvwtaavaMFSRHLP  118
             AF+ NDF+V YVA +SN+QLP  YR AA WG+HEGSLLLW LL+S WT AVA+FSR++P
Sbjct  59   HAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVP  118

Query  119  EEMVARVLGVMGLISVGFLMFMLFTSSPFDRLLPA-AADGRDLNPLLQDPGLVIHPPMLY  177
             ++VARVL+VMG++  GFL F+LFTS+PF R LPA + +GRDLNPLLQDPGL++HPP+LY
Sbjct  119  ADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLY  178

Query  178  MGYVGFSVAYAFAISALLGGKLDATWARWSRPWTTVAWVFMTIGIALGSGWAYYELGWGG  237
            MGYVGFSVA+AFAI+ALL+G+LD++ +R +RPWT  AWVF+T+GI LGS+WAYYELGWGG
Sbjct  179  MGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGG  238

Query  238  WWFWDPVENASFMPWLLGTALIHSLAVTEKRGAFKSWTVllaiaafsfsllGTFLVRSGV  297
            WWFWDPVENASFMPWL GTAL+HS+AVTE+R++FK+WT+LL+I AFS+ LLGTFLVRSGV
Sbjct  239  WWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGV  298

Query  298  LTSVHSFAADPKRGIFILSFLVLVIGASLLLFAWRAPKVGLGGKFDMLSREslllsnnvl  357
            L SVH+FA+DP RG+FIL+F+VLV G+SLLLFA R+ +V    +  + SRESLLL+NNVL
Sbjct  299  LVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVL  358

Query  358  lsvasasvFIGTLYPLFMDALGYGKLSVGPPYFEAvfvplmmpmvfmmglgplARWKKMA  417
            L  A   V++GTL PL    LG G +SVG P+F+++F  LM+P  +++G+GPL RW +  
Sbjct  359  LMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR-D  417

Query  418  VPDLAQRVKWAFASSlvlalllpllmgrflslESNKWSPMIVLGLLMAFWIIATLFVGLR  477
             P   +++ WA   + ++  +L   +        +K  +M  +G+ MA WI         
Sbjct  418  RPRNIRKLLWAAVVTTLVLSVLLPWLL------EDKIIAMTAVGMAMACWIAVLAVAEAV  471

Query  478  QRLSGQGAFMARVRKQSMSYYGMQLAHLGVALFIIGVTLVKGYETERDVRMNVGDTVMAG  537
            QR+S       R  K S+SY GM  AHLG+A+ I G+++ + Y  ERDVRM  GD+V   
Sbjct  472  QRVS-------RGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIH  524

Query  538  GYEFRFNGVTETEGPNYVAGVGHVTVSHDGKIVGELTPEKRQYNVSGMPLTEAAIQTGVF  597
            +Y F F  V +  GPNY +GV+ + V+++G   + L +EKR YN S M +TEAAI+ G+ 
Sbjct  525  DYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLT  584

Query  598  RDLYVSLGEPIPESEGAWAVRVYIKPFIDWIWAGTllmalggmlaVSDRRYRIHK  652
            RDLY +LGE +   +GAWAVR+Y KPF+ WIWAG LLMALGG+L ++D RYR +K
Sbjct  585  RDLYAALGEEL--DNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

399) Nwat_0811 in NC_014315


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  422 bits (1590),  Expect = 3e-119, Method: Compositional matrix adjust.
 Identities = 327/589 (56%), Positives = 440/589 (75%), Gaps = 8/589 (1%)

Query  53   AFTCLAISFLNNDFSVAYVANNSNSALPPAYRFAAIWGSHEgslllwsltlglwtVAVAL  112
            AF  L  +F+ NDF+VAYVA NSN+ LP  YR AA WG+HEGSLLLW L ++ WT+AVA+
Sbjct  53   AFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAV  112

Query  113  FSRSIPLAYVARVLAVMGMVNVGFLLFMLLTSNPFLRLFPA-PLDGQDLNPLLQDPGLVM  171
            FSR +P   VARVLAVMGMV  GFL F+L+TS PF R +PA P++G+DLNPLLQDPGL+ 
Sbjct  113  FSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIF  172

Query  172  HPPMLYMGYVGFSVAFSFAIAALIGKRLDAAWARWSRPWTVVAWLFLSIGITLGSWWAYY  231
            HPP+LYMGYVGFSVAF+FAIAAL++ RLD+A +R +RPWT+ AW+FL++GI LGS WAYY
Sbjct  173  HPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYY  232

Query  232  ELGWGGWWFWDPVENASFMPWLVGTALIHSLAVTEKRDAFKRWTVLLAIFTFSLSLLGTF  291
            ELGWGGWWFWDPVENASFMPWL GTAL+HS+AVTE+R +FK WT+LL+I +FSL LLGTF
Sbjct  233  ELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTF  292

Query  292  IVRSGVLTSVHAFATDPTRgvfilillglavggslllYAVRAPQVRDTGRFHLLSREGll  351
            +VRSGVL SVHAFA+DP+RG+FIL ++ L  GGSLLL+AVR+ +VR      L SRE+LL
Sbjct  293  LVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLL  352

Query  352  lannvvlivaaGSVLLGTLYPLVLEGLGLGKISVGPPYFDTVFVPLMVILAFLLGAGPLS  411
            L+NNV+L+ A   VLLGTL PLV   LGLG ISVG P+F+T+F  LMV +A+LLG GPL 
Sbjct  353  LGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLV  412

Query  412  RWKQQSLGELIKKLGFIFAISLTIGILVPYVVDKGDVFSAAAGLTVAIWIAlttllglwn  471
            RW ++   ++ K L      +L +++L+P +++   +  +A G+++A WIA      +  
Sbjct  413  RWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIA------VLA  466

Query  472  rlrnrggIVAGARSLSRSFIGMSLAHTGFAVAIVGVTLTTIYGQDRDVGITVGETAELGA  531
                   +  G+++ S S+ GM  AH G+AV+I G++++  Y+ +RDV +  G++  +  
Sbjct  467  VAEAVQRVSRGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHD  525

Query  532  YEFRLDKVHEVDGPNYRAIEGTVSVFKDEDLITTLHPQKRIYLVQTSPMTEAGIDAGLFR  591
            Y F +  V+++ GPNYR+  + ++V ++ +  + LH++KR+Y      MTEA+ID+GL R
Sbjct  526  YRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTR  585

Query  592  DLFVALGESLGNNAWSLRIQFKPFVRWIWlggllmalggavaaSDRRYR  640
            DL+ ALGE L+N AW++R+ +KPFVRWIW GGLLMALGG +  +D RYR
Sbjct  586  DLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

400) M5M_00265 in NC_018868


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  422 bits (1589),  Expect = 3e-119, Method: Compositional matrix adjust.
 Identities = 331/599 (56%), Positives = 459/599 (77%), Gaps = 8/599 (1%)

Query  46   MFVFVALAFVCLSYSFATDDFSVAYVANNSNSLLPWYYKLSAVWGGHEGSlllwvliltl  105
            +F+ VA AF  L  +F  +DF+VAYVA NSN+ LP  Y+++A WG+HEGSLLLWVL+++ 
Sbjct  46   LFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSG  105

Query  106  wtFAVAVKSHHMPIEMRARVLAVMGMVAVGFISFTLLTTSNPFDRLLPSVPSEGSDLNPL  165
            WT+AVAV S+++P ++ ARVLAVMGMV  GF++F L+T++ PF R LP+ P EG DLNPL
Sbjct  106  WTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSG-PFARTLPAFPVEGRDLNPL  164

Query  166  LQDFGLIIHPPMLYMGYVGFSVSFAFAIATLISGKLDSAWARWSRPWTNLAWAFLTIGIA  225
            LQD GLI+HPP+LYMGYVGFSV+FAFAIA+L+SG+LDSA +R +RPWT  AW FLT+GI 
Sbjct  165  LQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIV  224

Query  226  LGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAVTEKRGVFKSWTLLLAIftf  285
            LGS WAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS+AVTE+R+ FK+WTLLL+I +F
Sbjct  225  LGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAF  284

Query  286  slsllgtflVRSGVLTSVHAFATDPERGLFILAFLLVVIGGSLTLYALRAPAVKSATSFV  345
            SL LLGTFLVRSGVL SVHAFA+DP RG+FILAF+++V GGSL L+A+R+  V+S  +  
Sbjct  285  SLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNA  344

Query  346  GISREWFllannillvvvlatvllgtlYPLIADALGWGKISVGPPYFNKFFIPLMGVLCI  405
              SRE +LL+NN+LL+  +  VLLGTL PL+   LG G ISVG P+FN  F  LM  + +
Sbjct  345  LWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFAL  404

Query  406  LLAVGPLTNYKRSSEKELFQWLRWPFVAAVVLGALVPWLYETPYVWQASIAVFIASWMVL  465
            LL+VGPL    R   +++ + L+ + V+++VL+ L+PWL E   +  +++++ +A W+ +
Sbjct  405  LLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAV  464

Query  466  AAARDLRNKTRHSATLWAGLKKLSVSYFAMHLAHLGMAVTLIGVAFVSLYAEERDVRMSA  525
             A  +  ++  +++       K S+SY +M  AHLG+AVT+ G+AF   Y+ ERDVRM A
Sbjct  465  LAVAEAVQRVSRGT-------KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRA  517

Query  526  GKSLDIEGYHFELTEIRQVRGPNYLADEAVILVSKGDDLIAEMRPQKRKYLSGGNLMTEA  585
            G S+ I++Y+F + E+R++ GPNY ++ A+I V++ ++  A ++++KR Y ++  +MTEA
Sbjct  518  GDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEA  577

Query  586  AIDAGLFRDLYVAMGEPLGDGDWAMRVHFKPFVRWIWLGAIFMTLAGIATLWDKRYRLR  644
            AID+GL RDLY A+GE L++G WA+R+ +KPFVRWIW G+++M+L+G+  L D RYR R
Sbjct  578  AIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

401) ccmF in NC_020516


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  419 bits (1579),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 312/588 (54%), Positives = 446/588 (76%), Gaps = 18/588 (3%)

Query  42   AAQGQFLFILF-----SFGCLTWSFVTSDFSLQLAATNSHSETPMIYKITGVWGNHEGsl  96
            A+ G F  +LF     +F  L  +FV +DF++   A NS+++ P+ Y++++ WG HEGSL
Sbjct  37   ASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSL  96

Query  97   llwalalslwTVAVTIFSRNLPEIFMARVVGVLGCVSAGFLSFLLVTSNPFDRILPG-AA  155
            LLW L +S WT+AV++FSR++P  ++ARV++V+G V AGFL+F+L TS PF R LP+ + 
Sbjct  97   LLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPV  156

Query  156  EGRDLNPLLQDPGMIIHPPLLYMGYVGFSVAFAFAIAALLSGRMDAAWARWSRPWTTVAW  215
            EGRDLNPLLQDPG+I+HPPLLYMGYVGFSVAFAFAIAALLSGR+D+A +R +RPWT  AW
Sbjct  157  EGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAW  216

Query  216  IFLTCGITVGSGWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAVTEKRGAFRSWT  275
            +FLT GI +GS+WAYYELGWGGWWFWDPVENASFMPWLAGTAL+HS+AVTE+R++F++WT
Sbjct  217  VFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWT  276

Query  276  VLLAIAAFSLSLMGTFLVRSGVLTSVHAFATDPARGMFvlallvlvigvslvlFAWRAPT  335
            +LL+I AFSL L+GTFLVRSGVL SVHAFA+DPARGMF+LA++VLV G SL+LFA R+  
Sbjct  277  LLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHR  336

Query  336  LAGGGSFSLISRESALLGNNvllsvasgsvllgtlYPLFVDALGLGKISVGPPYFEAVFV  395
            + +  + +L SRES LLGNNVLL  A   VLLGTL PL    LGLG ISVG P+F+++F 
Sbjct  337  VRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFT  396

Query  396  PLMTPVIVLMMIGPIVRWKGDDGARILRKVV-VPLLVSVIIGVGVS-FAVGHVSVRTVLG  453
             LM P  +L+ +GP+VRW G D +R +RK++  +++ +++++V ++ +  + +   T +G
Sbjct  397  WLMVPFALLLGVGPLVRW-GRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVG  455

Query  454  LSLAAWVLIGSVQTLLQRLADRPGAATGTRLRGIPGAWWGMWFGHLGIGVFIIGVTLVGS  513
            +++A W+ + +V   +QR++     +T T L     + WGM  +HLG++V I G+++  +
Sbjct  456  MAMACWIAVLAVAEAVQRVSR----GTKTSL-----SYWGMVAAHLGLAVTITGIAFSQN  506

Query  514  LNTQIQVKMHPGDTAQLAGYTFSFRGIADAPGPNYAAARGTLDVTRDGHKVATLTPEKRV  573
             + + +V+M++GD+  + +Y F+FR + D  GPNY ++ + ++VTR+G+  A L +EKR+
Sbjct  507  YSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRL  566

Query  574  YLAQQMPMTEASIDIGLFRDVYVNLGEQLEDGAWVVGLFYRPFISWVW  621
            Y + +M MTEA+ID GL RD+Y  LGE+L++GAW V L+Y+PF+ W+W
Sbjct  567  YNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

402) Noc_0943 in NC_007484


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  418 bits (1574),  Expect = 5e-118, Method: Compositional matrix adjust.
 Identities = 324/589 (56%), Positives = 438/589 (75%), Gaps = 8/589 (1%)

Query  53   AFTCLAISFLNNDFSVAYVANNSNSALPPAYRFAAIWGSHEgslllwsltlglwtVAVAL  112
            AF  L  +F+ NDF+VAYVA NSN+ LP  YR AA WG+HEGSLLLW L ++ WT+AVA+
Sbjct  53   AFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAV  112

Query  113  FSRSIPLAYVARVLAVMGMVNVGFLLFMLLTSNPFLRLFPA-PLDGQDLNPLLQDPGLVM  171
            FSR +P   VARVLAVMGMV  GFL F+L+TS PF R +PA P++G+DLNPLLQDPGL+ 
Sbjct  113  FSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIF  172

Query  172  HPPMLYMGYVGFSVAFSFAIAALIGKRLDAAWARWSRPWTVVAWLFLSIGITLGSWWAYY  231
            HPP+LYMGYVGFSVAF+FAIAAL++ RLD+A +R +RPWT+ AW+FL++GI LGS WAYY
Sbjct  173  HPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYY  232

Query  232  ELGWGGWWFWDPVENASFMPWLVGTALIHSLAVTEKRDAFKRWTVLLAIFTFSLSLLGTF  291
            ELGWGGWWFWDPVENASFMPWL GTAL+HS+AVTE+R +FK WT+LL+I +FSL LLGTF
Sbjct  233  ELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTF  292

Query  292  IVRSGVLTSVHAFATDPTRgvfilillglavggslllYAVRVPQVQDTGRFHLLSREGll  351
            +VRSGVL SVHAFA+DP+RG+FIL ++ L  GGSLLL+AVR  +V+      L SRE+LL
Sbjct  293  LVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLL  352

Query  352  lannvvlivaaGSVLLGTLYPLVLEGLGLGKISVGPPYFDTVFVPLMVILAFLLGAGPLS  411
            L+NNV+L+ A   VLLGTL PLV   LGLG ISVG P+F+T+F  LMV +A+LLG GPL 
Sbjct  353  LGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLV  412

Query  412  RWKQQSLGELVKKLGFIFAISLTIGILVPYIVDKGDIFSAAAGLTVAIWVAlttllglwn  471
            RW ++   ++ K L      +L +++L+P +++   I  +A G+++A W+A      +  
Sbjct  413  RWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIA------VLA  466

Query  472  rlrnrggIVAGARSLSRSFIGMSLAHTGFAVAIVGVTLTTIYGQDRDVGVTVGETAELGA  531
                   +  G+++ S S+ GM  AH G+AV+I G++++  Y+ +RDV +  G++  +  
Sbjct  467  VAEAVQRVSRGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHD  525

Query  532  YEFRLDKIHEVDGPNYRAIEGTISVFKGEDLITTLHPQKRIYLVQTSPMTEAGIDAGLFR  591
            Y F +  ++++ GPNYR+  + I+V +  +  + LH++KR+Y      MTEA+ID+GL R
Sbjct  526  YRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTR  585

Query  592  DLFVALGESLGSNTWSLRIQFKPFVRWIWlggllmalggavaaSDRRYR  640
            DL+ ALGE L++ +W++R+ +KPFVRWIW GGLLMALGG +  +D RYR
Sbjct  586  DLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

403) Psefu_1961 in NC_015556


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  418 bits (1574),  Expect = 5e-118, Method: Compositional matrix adjust.
 Identities = 356/642 (56%), Positives = 480/642 (75%), Gaps = 7/642 (1%)

Query  1    MIPELGHLAMILALCLALVQATLPLIGAWRGDRQWMSLAQPaawgqfaflafafacltya  60
            M+PE GH  + LAL +AL+ +  PL G  RGD + M+ A   AW  F  +A AF  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   fMIDDFSVAYVAQNSNTALPWYYKFSAVWGAHEGSLLLWALILGGWTFAVAIFSRQLPEE  120
            F+++DF+VAYVA NSNT LP  Y+ +A WGAHEGSLLLW L+++GWT+AVA+FSRQ+P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MLARVLGVMGIISVGFLLFLIVTSNPFTRLLPNVPADGRDLNPLLQDFGLIIHPPMLYMG  180
            ++ARVL+VMG++  GFL F++ TS PF+R LP  P +GRDLNPLLQD GLI+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVgfsvafafaiaallggklDAAWARWSRPWTIIAWAFLGIGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIAALL+G+LD+A +R +RPWT+ AW FL +GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLT  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPERGVFILAFLLLVVGGSLTLFALRAPVVRSQVGFGLWSRETlllannlilv  360
            SVHAFASDP RG+FILAF++LV GGSL LFA+R+  VRS+V  +LWSRE+LLL+NN++L+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  vaaSMILLGTLYPLVLDALSGAKLSVGPPYFNALFVPlmgllmavlavgvlvRWKDTPLR  420
             A  ++LLGTL PLV   L+ + +SVG P+FN++F  LM  +  +L+VG LVRW     R
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  WLIGMLTPvlvasvalallasllWGDFHWAVLGVCL-LAAWVTLAGLRDIQDKTRHKGLF  479
             +  +L + +V+++ L++L + L  D   A+ +V + +A W+++ ++ +  ++  +    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG---  477

Query  480  KGMASLGRSYWGMQLAHLGLAVCALGVILTSLGSFERDMRMAPGEAVELGGYRFVFEGAA  539
               +  + SYWGM  AHLGLAV   G+ ++   S ERD+RM +G++V + +YRF F    
Sbjct  478  ---TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  540  HHEGPNFISDRGTVRIFDGEKQIAVLHPEKRLYTVQQSVMTEAGIDAGLTRDLFVALGEP  599
            +  GPN+ ++ + + +       AVLH+EKRLY   + VMTEA+ID+GLTRDL+ ALGE 
Sbjct  535  DITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  600  LEQGAWAVRIHIKPFVRWIWlgalmmgfggflaaaDKRYRMK  641
            L++GAWAVR+  KPFVRWIW G+L+M++GG+L  AD RYR +
Sbjct  595  LDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

404) PputGB1_3891 in NC_010322


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  417 bits (1569),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 302/538 (57%), Positives = 415/538 (78%), Gaps = 7/538 (1%)

Query  88   YKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQVMLARVLAVMGMISVGFLSFLII  147
            Y+ +A WGAHEGSLLLW L+++GWT+AV+VFSRQ+P  ++ARVLAVMGM+  GFL+F+++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  148  TSNPFQRLLPQVPTDGRDLNPLLQDFGLIVHPPMLYMGYVgfsvafafaiaallggrlDA  207
            TS PF R LP  P +GRDLNPLLQD GLI HPP+LYMGYVGFSVAFAFAIAALL+GRLD+
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  208  AWARWSRPWTIVAWAFLGVGITLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHS  267
            A +R +RPWT+ AW FL +GI LGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  268  LAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLTSVHAFAADPSRGIFILIFLLFV  327
            +AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL SVHAFA+DP+RG+FIL F+++V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  328  VGGSLTLFALRAPVVKSQVGFALWSRETlllannlvlvvaaSMILLGTLYPLVLDALTGA  387
             GGSL LFA+R+  V+S+V  ALWSRE+LLL+NN++L+ A  ++LLGTL PLV   L  +
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  388  KLSVGPPYFDALFLPLMALLMVVLSIGVVVRWKDTPGKWLVSMMTPVLIGSAILAPVAG-  446
             +SVG P+F+++F  LM  + ++L++G +VRW     + +  ++ + ++ + +L+ +   
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  447  FIVDDFDWPTLTAFALAAWVVLGGLRDILDKTRHKGLVKGLPGLGRSYWGMQlahlglav  506
            ++ D +   T  + A+A W+ + ++ + +++   +G   +L     SYWGM  AHLGLAV
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-RGTKTSL-----SYWGMVAAHLGLAV  496

Query  507  calgvvlSSNNSAERDLRMAPGESVELGGYHFLFQGAKHFEGPNFISDKGTIVVSRNGRE  566
               G+ +S N S ERD+RM +G+SV + +Y+F F+  +++ GPN+ ++ + I V+R+G  
Sbjct  497  TITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEP  556

Query  567  VTTLHPEKRLYTVQQSMMTEAGIDAGFTRDLYVALGEPLENGAWAVRVHIKPYVRWIW  624
             + LH+EKRLY   + +MTEA+ID+G+TRDLY ALGE L+NGAWAVR+  KP+VRWIW
Sbjct  557  EAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

405) Ssed_4284 in NC_009831


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  417 bits (1568),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 324/650 (50%), Positives = 470/650 (73%), Gaps = 21/650 (3%)

Query  1    MIPELGHlsliiglafafllasVPLIGVARKDQYLVR----YAWPLSYGMFFFIFLSVVV  56
            M+PE GH  L ++L+ A+LL+  PL GVAR D  ++     +AW L    F+ +  +  V
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLL----FICVAGAFFV  56

Query  57   LGYSFAIDDFSIAYVAHHSNSQLPIFFKIAAVWGGHEGSLLFWVFSLSAWSAAVAYFSKS  116
            L  +F ++DF++AYVA +SN+QLP+ +++AA WG+HEGSLL+WV+ +S+W+ AVA FS+ 
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQ  116

Query  117  IEEVFvarvlavlaliiiGFTLFMILTSSPFERLFPV-PMEGRDLNPMLQDVGLIFHPPM  175
            +   +VARVLAV++++  GF  F+++TS+PF R +P  P+EGRDLNP+LQD GLIFHPP+
Sbjct  117  VPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPL  176

Query  176  LYLGYVGFAVSFAFAIAALMGGSLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELGW  235
            LY+GYVGF+V+FAFAIAAL++G LDSA +R +RPWTLAAWVFLT GI LGS WAYYELGW
Sbjct  177  LYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGW  236

Query  236  GGWWFWDPVENASFMPWLIGTALLHSVIVTEKRAAFRNWTVllsifafslsllGTFIVRS  295
            GGWWFWDPVENASFMPWL GTALLHS+ VTE+RA+F+ WT+LLSI AFSL LLGTF+VRS
Sbjct  237  GGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRS  296

Query  296  GVLTSVHSFAADPSRGMFIllllglavggsltlFAFRASEMKSPARFELKSKETMLLVCN  355
            GVL SVH+FA+DP+RGMFIL ++ L  GGSL LFA R+  ++S     L S+E++LL  N
Sbjct  297  GVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNN  356

Query  356  ILLTVACGTVLLGTLYPLLIDALNMGKISVGPPYFNAvfvpivlvlfvfMGIGPNIRWKK  415
            +LL  A   VLLGTL PL+   L +G ISVG P+FN++F  +++ + +++G+GP +RW +
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  416  TKPGELKAKLLVPAVIATVVGAAAPFLADGQFNIWVMLGVGTATWVTLTTLRAAFDITKA  475
             +P +++  L  + V + V++   P L ++++     +G++ A W+++ ++  A +    
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQ----  472

Query  476  KDGSFSLARMGRSQL---GMIIAHLGIAVSVVGGTMVSNYSIEKSVRMGPGISQELAGYT  532
                  ++R  ++ L   GM+ AHLG+AV++ G +   NYS+E+ VRM +G S  + +Y 
Sbjct  473  -----RVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  533  FNYIETKNVVGPNYTAQQGQVEVTKDGEFVALLRPDRRQYNVRTMDMTEAGIDWGLFRDL  592
            F + E +++ GPNY +  + + VT++GE  A+L++++R YN   M MTEA+ID GL RDL
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  593  YITMGDPLSRTQFAVRLNYKPFVRWLWFGSIFMMVGGFFAASDKRYRTKK  642
            Y ++G+ L     AVRL YKPFVRW+W G+++M +GG++  +D RYR +K
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

406) ccmF in NC_008260


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  417 bits (1571),  Expect = 9e-118, Method: Compositional matrix adjust.
 Identities = 338/646 (53%), Positives = 470/646 (73%), Gaps = 11/646 (1%)

Query  1    MAAEIGHlslwlalaaalclSVFPLIGVYRNMPAWQWYARPLAWIQWLAMTIAMVALGYC  60
            M +E GH  L LAL+ AL LSV+PL GV R  +     A  +AW+  + ++ A   L   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FYINDFSVTYVAGHSNSALPLAYRLSAIWGGHEgslllwgwmlsgwAAMVGLLSRSVPLP  120
            F +NDF+V+YVAG+SN+ LP+ YR++A WG+HEGSLLLW  ++SGW+  V+++SR VP  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MVSRVLSVMGMIAVGFMLFMLLTSNPFDRNLPWFPLDGADLNPLLQDPGLIIHPPMLYMg  180
            +V+RVL+VMGM+  GF+ F+L+TS PF R LP FP++G DLNPLLQDPGLI+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  yvgfavafafavagLLMGNLDPAWARWARPWTTVAWSFLTVGIALGSWWAYYELGWGGWW  240
            YVGF+VAFAFA+A+LL G LD+A +R ARPWT  AW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLLPWLAGTALIHSLAVSEKRNMFRAWTVLLAIITFSLSLLGTFLVRSGVLT  300
            FWDPVENAS++PWLAGTAL+HS+AV+E+R  F+AWT+LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFANDPARGAFILGFLIVVAGGALTLFSLRASSLRSNTGFKPVSREAFLLGNNLILL  360
            SVHAFA+DPARG FIL+F+++V+GG+L LF++R+  +RS       SRE++LLGNN++L+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  TATSVVLMGTLFPLIGEALDM-KISIRSPYFNGFFVPLALVLILLMVPGVFSNWKRQDGN  419
            +A  VVL+GTL+PL+   L++  IS+  P+FN  F  L + + LL+  G +  W R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  TLLKRM-ALLAPAAIIAGWFGSRLPDPSPWQGVLAIMLALFLVFAHIDDVIRRASAYKQG  478
             + K + A +  + +++  +   L D       +++ +A  +    + + ++R S   +G
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS---RG  477

Query  479  FVTGLGKLGRGYWGMVFAHCGLAVLIAGITLVSFHEVERDIRMGPGDTAELGHYTFVFDS  538
              T+L     +YWGMV AH GLAV I+GI++     VERD+RM +GD+  + +Y F F  
Sbjct  478  TKTSL-----SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  539  LDKYSGPNFDATRGHFHVSHDGDPVAVMHPEKRTYHASGQVMTEAAIDAGFWRDLYVALG  598
            +   +GPN+ +  + + V+++G+P AV+H+EKR Y++S  VMTEAAID+G+ RDLY ALG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  599  EPLDNSDAWAVRIYFKPGIRWIWlgalimalggalalTDKRYRRNR  644
            E LDN+ AWAVR+Y+KP +RWIW G+L+MALGG L L+D RYRR +
Sbjct  593  EELDNG-AWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

407) Shewmr4_0234 in NC_008321


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  416 bits (1566),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 313/649 (49%), Positives = 460/649 (71%), Gaps = 21/649 (3%)

Query  1    MIPELGHFSLIIGVAFAFLLISVPLIGVARKDQYLVR----YAWPLTYGMFFFIALSVVS  56
            M+PE GH  L ++++ A+LL   PL GVAR D  ++     +AW L    F+ +A +   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLL----FICVAGAFFV  56

Query  57   LGYSFAVDDFSVAYVAHHSNSQLPIFFKIAAVWGGHEGSLLFWVFALSTWAASVALFSKG  116
            L  +F V+DF+VAYVA +SN+QLP+ +++AA WG+HEGSLL+WV+ +S W+ +VA+FS+ 
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQ  116

Query  117  LEEVFTARVLAVLALIVIGFSLFMLLTSSPFERLFPM-PAEGRDLNPMLQDVGLIFHPPM  175
            +   + ARVLAV++++  GF  F+L+TS+PF R +P  P EGRDLNP+LQD GLIFHPP+
Sbjct  117  VPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPL  176

Query  176  LYLGYVGFSVSFAFAIAALMSGHLDSAWARWSRPWTLAAWIFLTGGIALGSWWAYYELGW  235
            LY+GYVGFSV+FAFAIAAL+SG+LDSA +R +RPWTLAAW+FLT GI LGS WAYYELGW
Sbjct  177  LYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGW  236

Query  236  GGWWFWDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVllsifafslsllGTFIVRS  295
            GGWWFWDPVENASFMPWL GTAL+HS+ VTE+R++F+ WT+LLSI AFSL LLGTF+VRS
Sbjct  237  GGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRS  296

Query  296  GVLTSVHSFAADPSRGMFIllllglaiggsltlFAFRASEMSSPARFELKSKETMLLVCN  355
            GVL SVH+FA+DP+RGMFIL ++ L  GGSL LFA R+  + S     L S+E++LL  N
Sbjct  297  GVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNN  356

Query  356  vlltvaagtvllgtlYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFGFMGVGPIIRWKK  415
            VLL  A   VLLGTL PL+   LG+G ISVG P+FN++F  +++ +  ++GVGP++RW +
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  416  SKAGELKRQLLVPALVSAAIGIVTPFIVDGAFNTWVacgiaaaawivlataraaYNIVKP  475
             ++ ++++ L  + + +  ++++ P ++++ + +            V  +      ++  
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIA---------MTAVGMAMACWIAVLAV  467

Query  476  KDGELSMARMGRSQL---GMILAHLGIAVSVIGATMVSNYSIEKSVRMGPGVSQELAGYT  532
             ++   ++R  ++ L   GM+ AHLG+AV++ G +   NYS+E+ VRM +G S  + +Y 
Sbjct  468  AEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  533  FKYLETKNVVGPNYTAQQGQIEIYKGDKLLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDL  592
            F + E +++ GPNY +  + I + + +   ++L +++R YN   M MTEA+ID GL RDL
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  593  YVTMGDPISSTEFAVRLNYKPFVRWLWFGAIFMMVGGFFAASDKRYRSK  641
            Y ++G+ + +   AVRL YKPFVRW+W G+++M +GG++  +D RYR +
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

408) ccmF in NC_013861


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  416 bits (1564),  Expect = 3e-117, Method: Compositional matrix adjust.
 Identities = 317/595 (54%), Positives = 442/595 (75%), Gaps = 6/595 (1%)

Query  47   FFFIALSYLMLTLCFLQDDFsviyvvsnssisLPWFYKLCAVWGGHEGSMLLWVLILGFW  106
            F+ +A ++++L   F+ +DF+V YV +NS+  LP  Y++ A WG+HEGS+LLWVL+++ W
Sbjct  47   FICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGW  106

Query  107  TLLVAFFSSGLDREMRTRVLVVLGWLSIGFILFLLITSNPFLRQFQVLNTQGRDLNPLLQ  166
            TL VA FS  +  ++ +RVL V+G +  GF+ F+L+TS PF R +  +  +GRDLNPLLQ
Sbjct  107  TLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQ  166

Query  167  DPGFLFHPPMLYMGYVGfsvafafaiaalwaGKVESSWSKWTRPWTLAAWCCLTAGITLG  226
            DPG++FHPP+LYMGYVGFSVAFAFAIAAL +G+++S+ ++ +RPWTLAAW  LT GI LG
Sbjct  167  DPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLG  226

Query  227  SWWAYRELGWGGWWFWDPVENASFMPWLVGTALLHSLAVTEQRQQFKAWTMllaiaafsl  286
            S WAY ELGWGGWWFWDPVENASFMPWL GTALLHS+AVTEQR  FKAWT+LL+I AFSL
Sbjct  227  SAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSL  286

Query  287  sliGTFLVRSGVLTSVHAFAVDPQRGLYILGFLLFVIGGSLVLFLFRAQTLHSENNPSPF  346
             L+GTFLVRSGVL SVHAFA DP RG++IL+F+++V GGSL+LF  R++ ++S  N +  
Sbjct  287  CLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALW  346

Query  347  SRESALLLNNVFLVVIMLTVLMGTVYPLLIEGLGLGKLSVGAPYFNSVFvplmvpmlllm  406
            SRES LL NNV+L+  ML VL+GT+ PL+   LGLG +SVG P+FN++F  LMVP  LL+
Sbjct  347  SRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLL  406

Query  407  gvgIHLKWNKDNWRVVLKKFLGTAALSLLIPFVLL--MGTKKFDASAYMGLCLSFWVILS  464
            GVG  ++W +D  R + +K+L +A ++ L+  VLL  +   K+ A + +G+ ++ W+ + 
Sbjct  407  GVGPLVRWGRDRPRNI-RKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVL  465

Query  465  TAQAAYKRVTERGLSHVGQAYWGMVLAHLGVAATVIGIAVSTAYGVEDDVQMAPGKKVYL  524
            +   A +RV+ RG +  + +YWGMV AHLG+A T+ GIA S  Y+VE DV+M +G  V +
Sbjct  466  AVAEAVQRVS-RG-TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTI  523

Query  525  LGYSIEFMHQEPLIGPNYKGTRAQFKISNNGKAR-VIYPEKRLYTVGQMAMTESAIDVTP  583
             +Y + F +   + GPNY+G  A + ++ +G +  V+ +EKRLY  ++M MTE+AID   
Sbjct  524  HDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGL  583

Query  584  FRDIYVALGEPLSNDSWSVRLYYKPFIRWIWFGGFMILAGGFLALTDKRYYQRRR  638
             RD+Y ALGE L N++W+VRLYYKPF+RWIW GG+++  GG+L L+D RY +R+ 
Sbjct  584  TRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKP  638

409) Shewmr7_0229 in NC_008322


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  416 bits (1564),  Expect = 3e-117, Method: Compositional matrix adjust.
 Identities = 319/649 (50%), Positives = 465/649 (72%), Gaps = 21/649 (3%)

Query  1    MIPELGHFSLIIGVAFAFLLISVPLIGVARKDQYLVR----YAWPLTYGMFFFIALSVVS  56
            M+PE GH  L ++++ A+LL   PL GVAR D  ++     +AW L    F+ +A +   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLL----FICVAGAFFV  56

Query  57   LGYSFAVDDFSVAYVAHHSNSQLPIFFKIAAVWGGHEGSLLFWVFALSTWAASVALFSKG  116
            L  +F V+DF+VAYVA +SN+QLP+ +++AA WG+HEGSLL+WV+ +S W+ +VA+FS+ 
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQ  116

Query  117  LEEVFTARVLAVLALIVIGFSLFMLLTSSPFERLFPM-PAEGRDLNPMLQDVGLIFHPPM  175
            +   + ARVLAV++++  GF  F+L+TS+PF R +P  P EGRDLNP+LQD GLIFHPP+
Sbjct  117  VPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPL  176

Query  176  LYLGYVGFSVSFAFAIAALMSGHLDSAWARWSRPWTLAAWIFLTGGIALGSWWAYYELGW  235
            LY+GYVGFSV+FAFAIAAL+SG+LDSA +R +RPWTLAAW+FLT GI LGS WAYYELGW
Sbjct  177  LYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGW  236

Query  236  GGWWFWDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVllsifafslsllGTFIVRS  295
            GGWWFWDPVENASFMPWL GTAL+HS+ VTE+R++F+ WT+LLSI AFSL LLGTF+VRS
Sbjct  237  GGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRS  296

Query  296  GVLTSVHSFAADPSRGMFIllllglaiggsltlFAFRASEMSSPARFELKSKETMLLVCN  355
            GVL SVH+FA+DP+RGMFIL ++ L  GGSL LFA R+  + S     L S+E++LL  N
Sbjct  297  GVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNN  356

Query  356  vlltvaagtvllgtlYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFGFMGVGPIIRWKK  415
            VLL  A   VLLGTL PL+   LG+G ISVG P+FN++F  +++ +  ++GVGP++RW +
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  416  SKAGELKRQLLVPALVSAAIGIVTPFIVDGafnawvafgiaaaawivlataraaYNIVKP  475
             ++ ++++ L  + + +  ++++ P ++++ + A  A G+A A WI          ++  
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI---------AVLAV  467

Query  476  KDGELSMARMGRSQL---GMILAHLGIAVSVIGATMVSNYSIEKSVRMGPGVSQELAGYT  532
             ++   ++R  ++ L   GM+ AHLG+AV++ G +   NYS+E+ VRM +G S  + +Y 
Sbjct  468  AEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  533  FKYLETKNVVGPNYTAQQGQIEIYKGDKLLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDL  592
            F + E +++ GPNY +  + I + + +   ++L +++R YN   M MTEA+ID GL RDL
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  593  YVTMGDPISSTEFAVRLNYKPFVRWLWFGAIFMMVGGFFAASDKRYRSK  641
            Y ++G+ + +   AVRL YKPFVRW+W G+++M +GG++  +D RYR +
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

410) Spea_0218 in NC_009901


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  415 bits (1563),  Expect = 4e-117, Method: Compositional matrix adjust.
 Identities = 325/645 (51%), Positives = 469/645 (73%), Gaps = 17/645 (2%)

Query  1    MIPELGHFSLIIGLAFAMLLAIVPLVGVARKDQYLVRYAWPLSYGMFFFILFSVIA----  56
            M+PE GH  L ++L+ A+LL++ PL GVAR D  ++  A     G+F  +LF  +A    
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASA-----GVFAWLLFICVAGAFF  55

Query  57   -LGYSFAVDDFSVAYVAHHSNSELPIFFKIAAVWGGHEGSllfwvfslaawaaavalfsK  115
             L  +F V+DF+VAYVA +SN++LP+ +++AA WG+HEGSLL+WV+ +++W+ AVA+FS+
Sbjct  56   VLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR  115

Query  116  GLEEVFTARVLSVLAMILIGFTLFMLLTSSPFERLFPI-PMEGRDLNPMLQDVGLIFHPP  174
             +   + ARVL+V++M+  GF  F+L+TS+PF R +P  P+EGRDLNP+LQD GLIFHPP
Sbjct  116  QVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPP  175

Query  175  MLYLGYVGFSVSFAFAIAALMSGRLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELG  234
            +LY+GYVGFSV+FAFAIAAL+SGRLDSA +R +RPWTLAAWVFLT GI LGS WAYYELG
Sbjct  176  LLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELG  235

Query  235  WGGWWFWDPVENASFMPWLIGTALLHSLIVTEKRGAFRNWTVllsifafslsllGTFIVR  294
            WGGWWFWDPVENASFMPWL GTALLHS+ VTE+R++F+ WT+LLSI AFSL LLGTF+VR
Sbjct  236  WGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVR  295

Query  295  SGVLTSVHSFAADPSRGMFIllllglaiggsltlFAFRASEMRSPARFELKSKETMLLVC  354
            SGVL SVH+FA+DP+RGMFIL ++ L  GGSL LFA R+  +RS     L S+E++LL  
Sbjct  296  SGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGN  355

Query  355  NLLLTVACGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFGFMGIGPIIRWK  414
            N+LL  A   VLLGTL PL+   LG+G ISVG P+FN++F  +++ +  ++G+GP++RW 
Sbjct  356  NVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWG  415

Query  415  KSKAGELKRQLIIPAVISAVVGLAAPFIAGGEFNAWVVFGIAAAVWVTLMTFRAAYNMVK  474
            + ++ ++++ L  + V + V+++  P +  + + A    G+A A W+++++   A + V 
Sbjct  416  RDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV-  474

Query  475  TKDGSIDLTRLGRSQLGMIIAHLGIAVSVVGATMVSNYSLEKSVRMGPGISHELAGYTFN  534
            +++    L     S  GM+ AHLG+AV++ G +   NYS+E+ VRM +G S  + +Y F 
Sbjct  475  SRGTKTSL-----SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  535  YVETKNVVGPNYTAQQGQIEVYQGDDYVTLLRPDRRQYNVRTMDMTEAGIDWGLFRDLYV  594
            + E +++ GPNY +  + I V + ++  ++L++++R YN   M MTEA+ID GL RDLY 
Sbjct  530  FREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYA  589

Query  595  TMGDPISRTEYAVRINYKPFVRWIWFGSIFMMVGGFFAASDKRYR  639
            ++G+ +     AVR+ YKPFVRWIW G+++M +GG++  +D RYR
Sbjct  590  ALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

411) ccmF in NC_014532


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  414 bits (1559),  Expect = 8e-117, Method: Compositional matrix adjust.
 Identities = 328/619 (53%), Positives = 457/619 (74%), Gaps = 8/619 (1%)

Query  5    MIPEIGHFALIIALLMAAVQGCVPLAGAATRRPLWMAYARPMATGQFAFLVVAYACLTAS  64
            M+PE GH  L +AL +A + +  PL G A   +  MA A   A   F  +  A+  L  +
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  65   YLLDDFSVATVANNSNSMLPWYYKFSAVWGNHEGSVLLWSLILGAWTYAVSRFSRELPRD  124
            ++++DF+VA VA NSN+ LP  Y+ +A WG HEGS+LLW L++++WT AV+ FSR++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  125  MLARVLGVMGLISTGFLTFVLATSNPFARLLPNVPSDGADLNPLLQDFGLIIHPPMLYMG  184
            ++ARVL+VMG++ +GFL+F+L TS PFAR LP  P +G DLNPLLQD GLI+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  185  YVGFSVVFAFAIAALLGGRLDAAWTRWARPWTNVAWAFLTVGIALGSWWAYYELGWGGWW  244
            YVGFSV FAFAIAALL+GRLD+A TR ARPWT  AW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  245  FWDPVENASLLPWLAGTALIHSLAVTEKRGSFKSWTVLLAISTFSLSLMGTFLVRSGVLT  304
            FWDPVENAS++PWLAGTAL+HS+AVTE+R++FK+WT+LL+I +FSL L+GTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  305  SVHAFANDPSRGLFILVLLGITVGASLLLFALRAPRVSQRTGFAWLSRDAlllinnillv  364
            SVHAFA+DP+RG+FIL ++ +  G+SLLLFA+R+ RV  R   A  SR++LLL NN+LL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  365  imtvtvllgtlyplllDAFGLGKISVGPPYFNALFVPLTVLLCIFMGLGPLAQWKrtrtr  424
               + VLLGTL PL+   +GLG ISVG P+FN++F  L V + +++G+GPL +W R R R
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  425  tlwqrtwlaggmaliiagaipllYDGEWNLRVSLGLAAALWIVLPMLRGLLDRMHQGTSK  484
             +++  W A   +L+++  +P L ++      ++G+A A WI +  +   ++R+ +GT  
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT--  478

Query  485  LAALRKQSLAYWGMLLAHLgvavtivgvsvvaNYSVERNVRMGVGDTASLAGYTFTLTEL  544
                 K SL+YWGM+ AHLG+AVTI G++   NYSVER+VRM  GD+ ++ +Y FT+ E+
Sbjct  479  -----KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  545  GERRGPNFIADTARLEVQRGDDDRHFVMMPEKRLYLATGMPMTDVALRPGPLRDLYVAMG  604
             +  GPN+ ++ A + V R +++ + V+ +EKRLY ++ M MT+ A+  G  RDLY A+G
Sbjct  534  RDITGPNYRGGVALIGVTR-HGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  605  EDLGDGSWALRLQYKPLVR  623
            E+L++G+WA+RL YKP+VR
Sbjct  593  EELDNGAWAVRLYYKPFVR  611

412) ccmF in NC_014125


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  414 bits (1559),  Expect = 9e-117, Method: Compositional matrix adjust.
 Identities = 319/642 (50%), Positives = 456/642 (72%), Gaps = 3/642 (0%)

Query  1    MIAELGLFFLILALVASLMLALIPLAGLQFNRKDWIDSSRNYVVLQFLFVACAYLCLTAC  60
            M++E G  +L LAL  +L+L++ PL G+       + S+  +  L F+ VA A++ L   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FLMDDFSVIYVLNNSSLLLPWFYKFCAVWGGHEGSMLLWVAILSFWMILVCFFSSSLDTE  120
            F+++DF+V YV  NS+  LP  Y+  A WG+HEGS+LLWV ++S W + V  FS  + ++
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MRARVLVILGWLSIGFILFLLMTSNPFLRQFQVLNTQGRDLNPLLQDPGFLFHPPMLYMG  180
            + ARVL ++G +  GF+ F+L TS PF R +  +  +GRDLNPLLQDPG++FHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGfcvafafaiaalwaGKVETSWSKWTRPWTLAAWCCLTAGITLGSWWAYRELGWGGWW  240
            YVGF VAFAFAIAAL +G+++++ ++ +RPWTLAAW  LT GI LGS WAY ELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALLHSLAVTEQRQQFKAWTMllaiaafslsliGTFLVRSGVLT  300
            FWDPVENASFMPWL GTALLHS+AVTEQR  FKAWT+LL+I AFSL L+GTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFAVDPQRGLYILGFLLFVIGGSLTLFLFRAQTLQVNKHPGLLSRESALLLNNVFLV  360
            SVHAFA DP RG++IL+F+++V GGSL LF  R++ ++   + +L SRES LL NNV+L+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  VIMLTVLMGTVYPLLVEGLGLGKLSVGAPYFNAVFvplmipllllmglgvrlKWQNDCWR  420
              ML VL+GT+ PL+   LGLG +SVG P+FN++F  LM+P+ LL+G+G  ++W  D  R
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  DVFRKLNRifllslilpvillFCTSTEIHLTALLGLILAFWVLLSTANAAYHKVRDRGVA  480
            ++ + L    + +L+L+V+L       I   + +G+ +A W+ + +   A ++V  RG +
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV-SRG-T  478

Query  481  GVGQAYWGMVLAHCGVAATVIGIAVSSAYGVQDDVRMSPGKQVSLLDYQIGFINQTPLNG  540
              + +YWGMV AH G+A T+ GIA S  Y+V+ DVRM +G  V++ DY++ F +   + G
Sbjct  479  KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITG  538

Query  541  PNYKGTRAEFSIQYQNKTRQIF-PEKRVYTIGQMPMTESAIDVTPFRDIYIALGEPLSED  599
            PNY+G  A +++  +     ++ +EKR+Y  ++M MTE+AID    RD+Y ALGE L ++
Sbjct  539  PNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG  598

Query  600  AWSVRIYYKPLVRWIWAGGFMILAGGVLALTDRRYYRKRQVT  641
            AW+VR+YYKP+VRWIWAGG+++  GG+L L+D RY R++ + 
Sbjct  599  AWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLP  640

413) ccmF in NC_010995


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  413 bits (1554),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 357/642 (56%), Positives = 481/642 (75%), Gaps = 7/642 (1%)

Query  12   LVPEFGHFALILACCFSLLLFVVPLYGAHRGNLILMHSARafasaffvfvaiafvCLSYS  71
            ++PE+GH  L LA   +LLL V PL G  RG+  +M SA  FA  +F+ VA AF  L  +
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  72   FVVDDFSVAYVANHSNSLLPVYYKISAVWGGHEGSLLLWILMLAGWTLAVALFSRSLPLD  131
            FVV+DF+VAYVA +SN+ LPV Y+++A WG+HEGSLLLW+L+++GWTLAVA+FSR +P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  132  MQARVlailgfvgigfllfillTSNPFDRLLPLPPADGKDLNPLLQDIGLIIHPPVLYMG  191
            + ARVLA++G V  GFL FIL+TS PF R LP  P +G+DLNPLLQD GLI+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  192  YVGFSVCFAFAIAALLTGRLDSAWARWSRPWATLAWGFLSLGIALGSWWAYYELGWGGWW  251
            YVGFSV FAFAIAALL+GRLDSA +R +RPW+  AW FL+LGI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  252  FWDPVENASFMPWLVGTALIHSLAVTEKRGLFKSWTILLAIftfslsllgtflVRSGVLT  311
            FWDPVENASFMPWL GTAL+HS+AVTE+R+ FK+WT+LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  312  SVHAFANDPERgvfilgfllvvvggslilyglRAPVVKSAVGFGWLSRETlllsnnillv  371
            SVHAFA+DP RG+FIL+F+++V GGSL+L+++R+  V+S V  +  SRE+LLL+NN+LL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  372  vvmlavllgtlYPLIADALKLGKISVGAPFFNLFFIPLMGVLCFLMAFGPLANWKSSSVA  431
              ML VLLGTL PL+   L LG ISVG PFFN  F  LM  + +L++ GPL  W      
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  432  YLRQLLIKPWIFSLALGLLLPWLYEDEYSWGAALATMIGCWISFSLITDLLYRLRHAESA  491
             +R+LL  + + +L L++LLPWL ED     +A++  ++CWI+   +++ + R+ ++   
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT--  478

Query  492  AAGLRKLSLSYYAMVIAHLGVAVTLIGVCYTSIYNEHRDLRMEVGQKVALDNYEFVLEEL  551
                 K SLSY +MV AHLG+AVT+ G+ ++  Y+ +RD+RM  G+ V++++Y F + E+
Sbjct  479  -----KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  552  AKVNGPNYVADEARIAVYHKGKFLKQMKPQKRRYLATNSVMTEVALDPGLFRDLYIAMGE  611
              + GPNY ++ A I+V + G     + ++KR Y ++  VMTE A+D GL RDLY A+GE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  612  PLTDNAWAMRVHFKPFVRWIWLGAIFMALGSLLAVADKRYRK  653
             L + AWA+R+ +KPFVRWIW G+++MALG+LL +AD RYR+
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRR  635

414) Swoo_4656 in NC_010506


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  413 bits (1555),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 320/650 (50%), Positives = 470/650 (73%), Gaps = 21/650 (3%)

Query  1    MIPELGHlsliiglafafllasVPLIGVARKDQYLVR----YAWPLSYGMFFFIFLSVIV  56
            M+PE GH  L ++L+ A+LL+  PL GVAR D  ++     +AW L    F+ +  + +V
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLL----FICVAGAFFV  56

Query  57   LGYSFAIDDFSVAYVAHHSNSQLPIFFKIAAVWGGHEGSLLFWVFSLSVWTAAVAYFSKG  116
            L  +F ++DF+VAYVA +SN+QLP+ +++AA WG+HEGSLL+WV+ +S WT AVA FS+ 
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQ  116

Query  117  LEEVFTARVLSVLALIIIGFTLFMILTSSPFERLFPT-PMEGRDLNPMLQDVGLIFHPPM  175
            +   + ARVL+V++++  GF  F+++TS+PF R +P+ P+EGRDLNP+LQD GLIFHPP+
Sbjct  117  VPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPL  176

Query  176  LYLGYVGFAVSFAFAISALMGGRLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELGW  235
            LY+GYVGF+V+FAFAI+AL++GRLDSA +R +RPWTLAAWVFLT GI LGS WAYYELGW
Sbjct  177  LYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGW  236

Query  236  GGWWFWDPVENASFMPWLIGTALLHSVIVTEKRAAFRNWTVllsifafslsllGTFIVRS  295
            GGWWFWDPVENASFMPWL GTALLHS+ VTE+RA+F+ WT+LLSI AFSL LLGTF+VRS
Sbjct  237  GGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRS  296

Query  296  GVLTSVHSFAADPSRGMFIllllglavggsltlFAFRASEMKSPARFELKSRETMLLVCN  355
            GVL SVH+FA+DP+RGMFIL ++ L  GGSL LFA R+  ++S     L SRE++LL  N
Sbjct  297  GVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNN  356

Query  356  ILLTVACGTVLLGTLYPLLIDALNMGKISVGPPYFNAvfvpivlvlfvfMGIGPNIRWkk  415
            +LL  A   VLLGTL PL+   L +G ISVG P+FN++F  +++ + +++G+GP +RW +
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  416  skagslkakllvpaviaaivgiaapFMADGKFNVWVMLGIATAVWVTLATLRAGYDMMKA  475
             ++ +++  L  + V + ++++  P + ++K+     +G+A A W++         ++  
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIA---------VLAV  467

Query  476  KDGSLSLARINRSQL---GMIIAHLGIAVSVVGGTMVSNYSIEKSVRMGPGIQQELAGYT  532
             ++   ++R  ++ L   GM+ AHLG+AV++ G +   NYS+E+ VRM +G    + +Y 
Sbjct  468  AEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  533  FNYIETKNVVGPNYTAQQGQIEVTKDGDLVTLLRPDRRQYNVRTMDMTEAGIDWGLFRDL  592
            F + E +++ GPNY +  + I VT++G+  ++L++++R YN   M MTEA+ID GL RDL
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  593  YVTMGDPISRTEFAVRLNYKPFVRWLWFGSIFMMVGGFFAASDKRYRAKK  642
            Y ++G+ +     AVRL YKPFVRW+W G+++M +GG++  +D RYR +K
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

415) Sfri_0182 in NC_008345


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  412 bits (1552),  Expect = 3e-116, Method: Compositional matrix adjust.
 Identities = 312/633 (50%), Positives = 456/633 (73%), Gaps = 21/633 (3%)

Query  24   PLYGSARKDQYLVR----YAWPLTYGMFFFISLSVIALGYSFAVDDFSVAYVAHHSNSQL  79
            PL G AR D  ++     +AW L    F+ ++ + + L  +F V+DF+VAYVA +SN+QL
Sbjct  24   PLWGVARGDARMMASAGVFAWLL----FICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQL  79

Query  80   PIFFKIAAVWGGHEGSLLFWVFALSVWTASVALFSKGLEEVFTARVLSVLAMIVVGFGLF  139
            P+ +++AA WG+HEGSLL+WV+ +S WT +VA+FS+ +   + ARVL+V++M+  GF  F
Sbjct  80   PVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAF  139

Query  140  MILTSSPFERIFPI-PLEGRDLNPMLQDVGLIFHPPMLYLGYVGFSVCFAFAIAALMSGR  198
            +++TS+PF R +P  P+EGRDLNP+LQD GLIFHPP+LY+GYVGFSV FAFAIAAL+SGR
Sbjct  140  ILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGR  199

Query  199  LDSAWARWSRPWTLAAWIFLTGGISLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTAL  258
            LDSA +R +RPWTLAAW+FLT GI LGS WAYYELGWGGWWFWDPVENASFMPWL GTAL
Sbjct  200  LDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTAL  259

Query  259  VHSLIVTEKRGAFRNWTVllsifafslsllGTFIVRSGVLTSVHSFAADPSRglfillll  318
            +HS+ VTE+R++F+ WT+LLSI AFSL LLGTF+VRSGVL SVH+FA+DP+RG+FIL ++
Sbjct  260  LHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFM  319

Query  319  giaiggsltlFAFRASEMSSPARFELKSKETMLLICNvlltvaagtvllgtlYPLLIDAL  378
             +  GGSL LFA R+  + S     L S+E++LL  NVLL  A   VLLGTL PL+   L
Sbjct  320  VLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQL  379

Query  379  GMGKISVGPPYFNAVFVPIVLVLFGFMGIGPIIRWKKSKPGEIKKQLLVPAIIALVVGVS  438
            G+G ISVG P+FN++F  +++ +  ++G+GP++RW + +P +I+K L  + + +LV++V 
Sbjct  380  GLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVL  439

Query  439  APFVADGQFNAWVMCGVAATTWIMLSTLRAAYNIVSNKEGGISLNKMGRSQL---GMIVA  495
             P + ++++ A    G+A + WI          +++  E+   +++  ++ L   GM+ A
Sbjct  440  LPWLLEDKIIAMTAVGMAMACWI---------AVLAVAEAVQRVSRGTKTSLSYWGMVAA  490

Query  496  HFGIAVSVMGATIVSNYSIEKSVRMGPGISQELAGYTFKYLETKNVVGPNYTAQQGQIEI  555
            H+G+AV++ G ++  NYS+E+ VRM +G S  + +Y F + E +++ GPNY +  + I +
Sbjct  491  HLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGV  550

Query  556  YKDDEFITLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPISLTEFAVRLNYKPFV  615
             +++E  ++L +++R YN   M MTEA+ID GL RDLY ++G+ +     AVRL YKPFV
Sbjct  551  TRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFV  610

Query  616  RWLWFGSIFMMIGGFLAASDKRYRVKQVATEDA  648
            RW+W G+++M +GG+L  +D RYR ++   E +
Sbjct  611  RWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

416) Bxe_C0374 in NC_007953


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  412 bits (1551),  Expect = 4e-116, Method: Compositional matrix adjust.
 Identities = 335/588 (57%), Positives = 444/588 (76%), Gaps = 20/588 (3%)

Query  60   SFLINDFSVLYVVENSNSALPAVYRFTAVWGGHEGSlllwvllltlwMVAVTCFSKQLPV  119
            +F++NDF+V YV  NSN+ LP  YR +A WG+HEGSLLLWVLL++ W +AV+ FS+Q+P 
Sbjct  60   AFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPA  119

Query  120  TMVATVLGVMSWIASGFLLFMLFTSNPFSRLIPQ-SMEGRDLNPLLQDPGMVIHPPVLYA  178
             +VA VL+VM+ + +GFL F+LFTS PF+R +P  ++EGRDLNPLLQDPG+++HPP+LY 
Sbjct  120  DIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYM  179

Query  179  GYVGFSVAFAFAIAALLSGRLDAAWARWSRPWTTAAWVFLTLGIMLGSGWAYYELGWGGW  238
            GYVGFSVAFAFAIAALLSGRLD+A +R +RPWT AAWVFLTLGI+LGS+WAYYELGWGGW
Sbjct  180  GYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGW  239

Query  239  WFWDPVENASFMPWLAGTALIHSLAVTEKRGSFRSWTALLAICAFSLSLLGTFLVRSGVI  298
            WFWDPVENASFMPWLAGTAL+HS+AVTE+R++F++WT LL+ICAFSL LLGTFLVRSGV+
Sbjct  240  WFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVL  299

Query  299  TSVHAFASDPTRgvfilgflalvvggalllfaWRAPQIGLGAGFEPVSREALLLSNNvll  358
             SVHAFASDP+RG+FIL+F+ LV GG+LLLFA R+ ++         SRE+LLL+NNVLL
Sbjct  300  VSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLL  359

Query  359  mvaaasvllGTLYPMVLDALGLDKISVGPPYFDSVFVPLMTPAIFLMGVGPLARWKAARV  418
            M A   VLLGTL P+V   LGL+ ISVG P+F+++F  LM P  +L+GVGPL RW   R 
Sbjct  360  MAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRP  419

Query  419  PDLAARLRWaaavsvvtalalPFTLGSW------RPLVSLGLLLATWSFATVAVSMRERI  472
             ++  +L WAA V+ +        L +W       ++ ++G+ +A W +A +AV+   + 
Sbjct  420  RNI-RKLLWAAVVTTLVLS----VLLPWLLEDKIIAMTAVGMAMACW-IAVLAVAEAVQR  473

Query  473  GSQQGRPLLRFRRVPRASYGMWLAHAGIGVFIVGVTLVKGYESERDVPMRRGQTVEVGGY  532
             S+  +  L ++       GM  AH G++V I G+++ + Y  ERDV MR G++V + +Y
Sbjct  474  VSRGTKTSLSYW-------GMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  533  QFRFDGVRDVDGPNYRATRASIAVSREGRPVTTLYPEKRLFLVQKMPMTEAAIDHGVLRD  592
            +F F  VRD+ GPNYR+  A I+V+R+G P + L +EKRL+   +M MTEAAID G+ RD
Sbjct  527  RFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  593  LYVAMGEPIGEEAWTLRIQIKPFVRWIWagcllmalggmlaaSDRRYR  640
            LY A+GE +++ AW++R+  KPFVRWIWAG LLMALGG+L  +D RYR
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

417) Pcryo_1348 in NC_007969


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  412 bits (1551),  Expect = 4e-116, Method: Compositional matrix adjust.
 Identities = 307/623 (50%), Positives = 446/623 (72%), Gaps = 16/623 (2%)

Query  28   GVIRNQVAWQRLAPSLAWAQFAAMITSFGALIAGFYYNDFSLSYVAQHSNTLLPWYYKLS  87
            GV R +      A  +AW  F  +  +F  L+ +F  NDF+++YVA +SNT LP  Y+++
Sbjct  27   GVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVA  86

Query  88   ATWGGHEGSLLLWMTIMATWCALVSYFSRGLPLSMRARVLVILAGVQLMMLTMLIFTSSP  147
            ATWG+HEGSLLLW+ +M+ W   V+ FSR +P  + ARVL +++ V    L+ ++FTS+P
Sbjct  87   ATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGP  146

Query  148  FERTLPNLAVDGADLNPVLQDFGLIIHPPMLYMGYVGMVVPFAFCMAALWEGRLDAAWTR  207
            F RTLP ++V+G DLNP+LQD GLI+HPP+LYMGYVG  V+FAF +AAL  GRLD+A TR
Sbjct  147  FARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTR  206

Query  208  WSRPWALAAWGFLTIGIALGSWWAYYELGWGGWWFWDPVENASFMPWLVGLALLHSLAVT  267
             +RPW+LAAW FLT+GI LGS WAYYELGWGGWWFWDPVENASFMPWL G ALLHS+AVT
Sbjct  207  FARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVT  266

Query  268  EKRGVFKAWTIMLAIFAFALSLLGTFLVRSGVLTSVHSFAADPTRglvilailgiiigsg  327
            E+R+ FKAWT++L+I AF+L LLGTFLVRSGVL SVH+FA+DP+RG+ ILA++ ++ G++
Sbjct  267  EQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGS  326

Query  328  llMFAVRGWRLTVESQYQLISRESFLVINNaiiliatlvvllgtlYPIIADAFGLGQVSV  387
            LL+FAVRG R+    +  L SRES+L+ NN +++ A LVVLLGTL P++   +GLG +SV
Sbjct  327  LLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISV  386

Query  388  GPPYFNALFVPLTWLLL---IAMGMGSNIRWKKD-TRPLLGIGMVIAVSSLVLAAIITYF  443
            G P+FN++F   TWL++   + +G+G+ +RW +D  R +  +     V++LVL+ ++  +
Sbjct  387  GEPFFNTMF---TWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWL  443

Query  444  VNPSSMLNIGVTLAVSFWVLLWMAVDFKDKTKNAPNFFNGLRQLRLSYWGQQTAHIGVLV  503
            ++   +   +V +A++ W+ +    +  ++   + +         LSYWG  +AH+G+ V
Sbjct  444  LEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTK-------TSLSYWGMVAAHLGLAV  496

Query  504  AVIGIAFTSSLSIERDVAMGIGDTVNVQGYDFEVTEFFEIKGSNFDATQAQVVVSKNGRE  563
            ++ GIAF+ + S+ERDV M  GD+V +++Y F   E  +I G+N+ +  A + V+++G  
Sbjct  497  TITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEP  556

Query  564  VAKLNPEKRTYIISTMPTTEAAIDASLMRDVYVALGEPIADGSNQWALRIYVKPLIRWIW  623
             A L++EKR Y  S M  TEAAID++L RD+Y ALGE + +G+  WA+R+Y KP++RWIW
Sbjct  557  EAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGA--WAVRLYYKPFVRWIW  614

Query  624  LGAIIMALGGLISMLDKRYRIKK  646
             G+++MALGGL+ + D RYR +K
Sbjct  615  AGGLLMALGGLLCLADPRYRRRK  637

418) PSYCG_07095 in NC_021661


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  412 bits (1551),  Expect = 4e-116, Method: Compositional matrix adjust.
 Identities = 307/623 (50%), Positives = 446/623 (72%), Gaps = 16/623 (2%)

Query  28   GVIRNQVAWQRLAPSLAWAQFAAMITSFGALIAGFYYNDFSLSYVAQHSNTLLPWYYKLS  87
            GV R +      A  +AW  F  +  +F  L+ +F  NDF+++YVA +SNT LP  Y+++
Sbjct  27   GVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVA  86

Query  88   ATWGGHEGSLLLWMTIMATWCALVSYFSRGLPLSMRARVLVILAGVQLMMLTMLIFTSSP  147
            ATWG+HEGSLLLW+ +M+ W   V+ FSR +P  + ARVL +++ V    L+ ++FTS+P
Sbjct  87   ATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGP  146

Query  148  FERTLPNLAVDGADLNPVLQDFGLIIHPPMLYMGYVGMVVPFAFCMAALWEGRLDAAWTR  207
            F RTLP ++V+G DLNP+LQD GLI+HPP+LYMGYVG  V+FAF +AAL  GRLD+A TR
Sbjct  147  FARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTR  206

Query  208  WSRPWALAAWGFLTIGIALGSWWAYYELGWGGWWFWDPVENASFMPWLVGLALLHSLAVT  267
             +RPW+LAAW FLT+GI LGS WAYYELGWGGWWFWDPVENASFMPWL G ALLHS+AVT
Sbjct  207  FARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVT  266

Query  268  EKRGVFKAWTIMLAIFAFALSLLGTFLVRSGVLTSVHSFAADPTRglvilailgiiigsg  327
            E+R+ FKAWT++L+I AF+L LLGTFLVRSGVL SVH+FA+DP+RG+ ILA++ ++ G++
Sbjct  267  EQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGS  326

Query  328  llMFAVRGWRLTVESQYQLISRESFLVINNaiiliatlvvllgtlYPIIADAFGLGQVSV  387
            LL+FAVRG R+    +  L SRES+L+ NN +++ A LVVLLGTL P++   +GLG +SV
Sbjct  327  LLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISV  386

Query  388  GPPYFNALFVPLTWLLL---IAMGMGSNIRWKKD-TRPLLGIGMVIAVSSLVLAAIITYF  443
            G P+FN++F   TWL++   + +G+G+ +RW +D  R +  +     V++LVL+ ++  +
Sbjct  387  GEPFFNTMF---TWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWL  443

Query  444  VNPSSMLNIGVTLAVSFWVLLWMAVDFKDKTKNAPNFFNGLRQLRLSYWGQQTAHIGVLV  503
            ++   +   +V +A++ W+ +    +  ++   + +         LSYWG  +AH+G+ V
Sbjct  444  LEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTK-------TSLSYWGMVAAHLGLAV  496

Query  504  AVIGIAFTSSLSIERDVAMGIGDTVNVQGYDFEVTEFFEIKGSNFDATQAQVVVSKNGRE  563
            ++ GIAF+ + S+ERDV M  GD+V +++Y F   E  +I G+N+ +  A + V+++G  
Sbjct  497  TITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEP  556

Query  564  VAKLNPEKRTYIISTMPTTEAAIDASLMRDVYVALGEPIADGSNQWALRIYVKPLIRWIW  623
             A L++EKR Y  S M  TEAAID++L RD+Y ALGE + +G+  WA+R+Y KP++RWIW
Sbjct  557  EAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGA--WAVRLYYKPFVRWIW  614

Query  624  LGAIIMALGGLISMLDKRYRIKK  646
             G+++MALGGL+ + D RYR +K
Sbjct  615  AGGLLMALGGLLCLADPRYRRRK  637

419) ccmF in NC_008702


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  411 bits (1545),  Expect = 1e-115, Method: Compositional matrix adjust.
 Identities = 325/598 (55%), Positives = 439/598 (74%), Gaps = 11/598 (1%)

Query  47   FFFVALSFVLLTWAFVVNDFSVQYVAMHSNTATPLAYRITAVWGSHEGSlllwaltltlw  106
            F+ VA +F +L  AFVVNDF+V YVA +SNT  P+ YR++A WG+HEGSLLLW L ++ W
Sbjct  47   FICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGW  106

Query  107  tvavtvFSRHLPEAFVARVLGVLGCISVGFLAFMLVTSNPFDRLLPGAP-EGRDLNPLLQ  165
            T+AV+VFSR++P  +VARVL+V+G +  GFLAF+L TS PF R LP+ P EGRDLNPLLQ
Sbjct  107  TLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQ  166

Query  166  DPGMIIHPPLLYMGYVGFSVAFAFAIAALLSGRLDAAWARWSRPWTTIAWVFLTAGITVG  225
            DPG+I+HPPLLYMGYVGFSVAFAFAIAALLSGRLD+A +R +RPWT  AWVFLT GI +G
Sbjct  167  DPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLG  226

Query  226  SGWAYYELGWGGWWFWDPVENASFMPWLLGTALIHSLAVTEKRGAFRSWTVLLAIGAFSL  285
            S+WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS+AVTE+R++F++WT+LL+I AFSL
Sbjct  227  SAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSL  286

Query  286  SLLGTFLVRSGVLTSVHAFATDPRRGLFVLAFLVTVIGVSLVLYAWRAPRLAGGGRFGLV  345
             LLGTFLVRSGVL SVHAFA+DP RG+F+LAF+V V G SL+L+A R+ R+ +    +L 
Sbjct  287  CLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALW  346

Query  346  SRDtsllgnnvllsvvsasvllgtlYPLFLDALGLGKISVGPPYFEAVFVPLMTPVVILM  405
            SR++ LLGNNVLL      VLLGTL PL    LGLG ISVG P+F+++F  LM P  +L+
Sbjct  347  SRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLL  406

Query  406  MFGPFLRWKNDDLGAAVRRVA-PAFIASVVIGVGAAFAIGHVTWRTvlglalaawvvlas  464
              GP++RW  D     +R++  +A ++++V++V  +  + +   + +   A++  +    
Sbjct  407  GVGPLVRWGRDR-PRNIRKLLWAAVVTTLVLSVLLPWLLED---KIIAMTAVGMAMACWI  462

Query  465  lqllvsrlRERAGAAVSSRLSTIPAAWWGMWLAHLGVGVFIIGVTLVGSLEQNLDLKMRP  524
              L V+   +R + +  + LS      WGM  AHLG++V I G+++  +   + D++MR+
Sbjct  463  AVLAVAEAVQRVSRGTKTSLSY-----WGMVAAHLGLAVTITGIAFSQNYSVERDVRMRA  517

Query  525  GEQAEFAGYTLAFRGVQEIEGPNYDAARANIVMSRGGVELNTLEPEKRVYRAQQMPMTEA  584
            G+   + +Y ++FR V++I GPNY ++ A I ++R G     L++EKR+Y + +M MTEA
Sbjct  518  GDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEA  577

Query  585  ALDVGLFRDIYVSLGEGLKDGSWIVSLHYKPFISWIWAGCLLMVAGGICAAADRRYRK  642
            A+D GL RD+Y +LGE L +G+W V L YKPF+ WIWAG LLM  GG+   AD RYR+
Sbjct  578  AIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRR  635

420) Sputcn32_3724 in NC_009438


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  411 bits (1545),  Expect = 1e-115, Method: Compositional matrix adjust.
 Identities = 323/647 (50%), Positives = 465/647 (72%), Gaps = 17/647 (2%)

Query  1    MIPELGHFSLIIGVAFAFLLVSVPLIGVARKDQYLVR----YAWPLAYGMFFFISLSVVS  56
            M+PE GH  L ++++ A+LL   PL GVAR D  ++     +AW L    F+ ++ +   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLL----FICVAGAFFV  56

Query  57   LGYSFAVDDFSVAYVAHHSNSQLPIFFKIAAVWGGHEGSLLFWVFSLATWAASVALFSKG  116
            L  +F V+DF+VAYVA +SN+QLP+ +++AA WG+HEGSLL+WV+ ++ W+ +VA+FS+ 
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQ  116

Query  117  LEEVFTARvlavlaviviGFSLFMLLTSSPFERLFPM-PAEGRDLNPMLQDVGLIFHPPM  175
            +   + ARVLAV++++  GF  F+L+TS+PF R +P  P EGRDLNP+LQD GLIFHPP+
Sbjct  117  VPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPL  176

Query  176  LYLGYVGFSVSFAFAIAALMSGRLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELGW  235
            LY+GYVGFSV+FAFAIAAL+SGRLDSA +R +RPWTLAAWVFLT GI LGS WAYYELGW
Sbjct  177  LYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGW  236

Query  236  GGWWFWDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVllsifafslsllGTFIVRS  295
            GGWWFWDPVENASFMPWL GTAL+HS+ VTE+R++F+ WT+LLSI AFSL LLGTF+VRS
Sbjct  237  GGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRS  296

Query  296  GVLTSVHSFAADPSRGMFIllllglaiggsltlFAFRASEMSSPARFELKSKETMLLICN  355
            GVL SVH+FA+DP+RGMFIL ++ L  GGSL LFA R+  + S     L S+E++LL  N
Sbjct  297  GVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNN  356

Query  356  vlltvatgtvllgtlYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFAFMGVGPIIRWKK  415
            VLL  A   VLLGTL PL+   LG+G ISVG P+FN++F  +++ +  ++GVGP++RW +
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  416  SKAGELRRQLLIPALISVAIGIVTPFIVDGAFNAWVAFGIAAAVWI-ILATARAAYNIVK  474
             ++ ++R+ L  + + ++ ++++ P ++++ + A  A G+A A WI +LA A A   + +
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSR  476

Query  475  PKEGDISVARMGRSQFGMILAHFGIAVSVIGATMVSNYSVEKSVRMGPGVSQELAGYTFK  534
                 +S         GM+ AH+G+AV++ G +   NYSVE+ VRM +G S  + +Y F 
Sbjct  477  GTKTSLSY-------WGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  535  YLETKNVVGPNYTAQQGQIEIYkddklltllkpdRRQYNVRTMDMTEAGIDWGLFRDLYV  594
            + E +++ GPNY +  + I + +++   ++L +++R YN   M MTEA+ID GL RDLY 
Sbjct  530  FREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYA  589

Query  595  TMGDPISATEFAVRLNYKPFVRWLWfgsifmmiggffAASDKRYRSK  641
            ++G+ +     AVRL YKPFVRW+W G+++M +GG++  +D RYR +
Sbjct  590  ALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

421) Sputw3181_0191 in NC_008750


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  411 bits (1545),  Expect = 1e-115, Method: Compositional matrix adjust.
 Identities = 323/647 (50%), Positives = 465/647 (72%), Gaps = 17/647 (2%)

Query  1    MIPELGHFSLIIGVAFAFLLVSVPLIGVARKDQYLVR----YAWPLAYGMFFFISLSVVS  56
            M+PE GH  L ++++ A+LL   PL GVAR D  ++     +AW L    F+ ++ +   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLL----FICVAGAFFV  56

Query  57   LGYSFAVDDFSVAYVAHHSNSQLPIFFKIAAVWGGHEGSLLFWVFSLATWAASVALFSKG  116
            L  +F V+DF+VAYVA +SN+QLP+ +++AA WG+HEGSLL+WV+ ++ W+ +VA+FS+ 
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQ  116

Query  117  LEEVFTARvlavlaviviGFSLFMLLTSSPFERLFPM-PAEGRDLNPMLQDVGLIFHPPM  175
            +   + ARVLAV++++  GF  F+L+TS+PF R +P  P EGRDLNP+LQD GLIFHPP+
Sbjct  117  VPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPL  176

Query  176  LYLGYVGFSVSFAFAIAALMSGRLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELGW  235
            LY+GYVGFSV+FAFAIAAL+SGRLDSA +R +RPWTLAAWVFLT GI LGS WAYYELGW
Sbjct  177  LYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGW  236

Query  236  GGWWFWDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVllsifafslsllGTFIVRS  295
            GGWWFWDPVENASFMPWL GTAL+HS+ VTE+R++F+ WT+LLSI AFSL LLGTF+VRS
Sbjct  237  GGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRS  296

Query  296  GVLTSVHSFAADPSRGMFIllllglaiggsltlFAFRASEMSSPARFELKSKETMLLICN  355
            GVL SVH+FA+DP+RGMFIL ++ L  GGSL LFA R+  + S     L S+E++LL  N
Sbjct  297  GVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNN  356

Query  356  vlltvatgtvllgtlYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFAFMGVGPIIRWKK  415
            VLL  A   VLLGTL PL+   LG+G ISVG P+FN++F  +++ +  ++GVGP++RW +
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  416  SKAGELRRQLLIPALISVAIGIVTPFIVDGAFNAWVAFGIAAAVWI-ILATARAAYNIVK  474
             ++ ++R+ L  + + ++ ++++ P ++++ + A  A G+A A WI +LA A A   + +
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSR  476

Query  475  PKEGDISVARMGRSQFGMILAHFGIAVSVIGATMVSNYSVEKSVRMGPGVSQELAGYTFK  534
                 +S         GM+ AH+G+AV++ G +   NYSVE+ VRM +G S  + +Y F 
Sbjct  477  GTKTSLSY-------WGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  535  YLETKNVVGPNYTAQQGQIEIYkddklltllkpdRRQYNVRTMDMTEAGIDWGLFRDLYV  594
            + E +++ GPNY +  + I + +++   ++L +++R YN   M MTEA+ID GL RDLY 
Sbjct  530  FREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYA  589

Query  595  TMGDPISATEFAVRLNYKPFVRWLWfgsifmmiggffAASDKRYRSK  641
            ++G+ +     AVRL YKPFVRW+W G+++M +GG++  +D RYR +
Sbjct  590  ALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

422) Fbal_0303 in NC_014541


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  411 bits (1548),  Expect = 6e-116, Method: Compositional matrix adjust.
 Identities = 328/643 (52%), Positives = 469/643 (73%), Gaps = 13/643 (2%)

Query  1    MVPELGHYSliiglafaallaVVPLIGVARKDAYLVSFARPMAYGMCLFMALSVV--CLG  58
            M+PE GH  L ++L+ A LL+V PL GVAR DA ++  A +  ++  LF+ ++     L 
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMM--ASAGVFAWLLFICVAGAFFVLV  58

Query  59   YAFATDDFSVAYVAHNSNSHLPVYFKIAAIWGGHEGSLLFWTFSISIWAATVSAFSKGLE  118
             AF  +DF+VAYVA NSN++LPV +++AA WG+HEGSLL+W + +S W+ +V+ FS+ + 
Sbjct  59   HAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVP  118

Query  119  EAFTARVLSVLGMIIVGFALFMLFTSSPFERLLPNVPMEGRDLNPMLQDVGLIFHPPLLY  178
              + ARVL+V+GM+  GF  F+LFTS+PF R LP  P+EGRDLNP+LQD GLIFHPPLLY
Sbjct  119  ADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLY  178

Query  179  LGYVGFSVTFAFAIAALMSGRLDSAWARWSRPWALAAWAFLTAGIALGSWWAYYELGWGG  238
            +GYVGFSV+FAFAIAAL+SGRLDSA +R +RPW+LAAW FLT GI LGS WAYYELGWGG
Sbjct  179  MGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGG  238

Query  239  WWFWDPVENASFMPWLVGTALIHSLIVTEKRGTFRNWTILLAIftfslsllgtflVRSGV  298
            WWFWDPVENASFMPWL GTAL+HS+ VTE+R+ F+ WT+LL+I +FSL LLGTFLVRSGV
Sbjct  239  WWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGV  298

Query  299  LTSVHSFAADPSRglfilillgltiggslmlFALRATELASPSRFELLSKETMLLLCNVL  358
            L SVH+FA+DP+RG+FIL ++ L  GGSL+LFA+R+  + S     L S+E++LL  NVL
Sbjct  299  LVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVL  358

Query  359  LVVATGSVLLGTLYPLLGDALGLGQISVGPPYFNTVFNPIVLVMFVFMGIGPFIRWKKAK  418
            L+ A   VLLGTL PL+   LGLG ISVG P+FNT+F  +++   +++G+GP++RW + +
Sbjct  359  LMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR  418

Query  419  EGELKRll-pslivaivvaiaaplliGGKLNGWIFAGLFTATWITA-TLVQGLIRECRDT  476
              ++++LL ++++ ++V+++  P L+ +K+ +    G+  A WI+  ++ +++ R  R+T
Sbjct  419  PRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT  478

Query  477  DGSFTMRRITRSYVGMQIAHLGIAMAIVGGTVVSHFESERSVRMGPGISESLAGYTFTYE  536
              S+       SY GM  AHLG+A++I G +   ++  ER VRM +G S ++ +Y FT+ 
Sbjct  479  KTSL-------SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFR  531

Query  537  QTRMVQGPNYTAEQGVVTVTQDGDYVTTLYPDRRQYNVRTMDMTEAGIDWGFFRDLYVTM  596
            + R + GPNY +  +++ VT++G+  + L +++R YN   M MTEA+ID G+ RDLY ++
Sbjct  532  EVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAAL  591

Query  597  GDPLDATHYAVRLNYKPMVRWLWIGSILMMVGGIVAATDKRIR  639
            G+ LD    AVRL YKP VRW+W G++LM +GG++  +D R R
Sbjct  592  GEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

423) Sde_1871 in NC_007912


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  410 bits (1544),  Expect = 1e-115, Method: Compositional matrix adjust.
 Identities = 324/647 (51%), Positives = 476/647 (74%), Gaps = 7/647 (1%)

Query  1    MLPEYGHlalimalllslclsiiPMAGSYNGKLVWMASARSLSTGMFVFVAISIVLLGVS  60
            M+PEYGH  L +AL ++L LS+ P+ G   G    MASA  ++  +F+ VA ++ +L  +
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FYQDDFTVAYVANHSNSLLPVVYKICAVWGGHEGSMLLWVLMLAGWTLAVTIFSRELPLD  120
            F  +DFTVAYVA +SN+ LPV Y++ A WG+HEGS+LLWVL+++GWTLAV++FSR++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  FQARVLSVLGMVSFGFILFILLTSNPFDRILPLPPVDGADLNPFLQDPGFIFHPPMLYMG  180
            + ARVL+V+GMV  GF+ FIL+TS PF R LP  PV+G DLNP+LQDPG+IFHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFAVIFAFSIAALLSGRLDSAWARWCRPWGNLAWCFLTLGLTLGSWWAYYELGWGGWW  240
            YVGF+V FAF+IAALLSGRLDSA +R  RPW   AW FLTLG+ LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENAAFMPWLVGTAFIHNLAVSEKRGLFKNWTLFLAIFGFslsllgtllvrsgllt  300
            FWDPVENA+FMPWL GTA++H++AV+E+R+ FK WTL+L+I +FSL LLGT+LVRSG+L 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  svHAFASDPSRGVFIGAFLFIVILASLILFAMRAPLVKSKTGFALLSRDAFLLLNSVVFI  360
            SVHAFASDP+RG+FI AF+ +V  +SL+LFA+R+  V+S+   AL SR+++LL N+V+++
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  VSASIvllgtlypvvllllglgavsvgEPYFNIFFSILMSIAAIATGIGMVLNWKKTEAK  420
             +  +VLLGTL P+V   LGLG++SVGEP+FN  F+ LM   A+  G+G ++ W +  ++
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  RMRDWVKSPALYALWLGTALPGMIADEYSWAAAVSIALGSWVILSCLFDLVRKTRNAASV  480
             +R  + ++ + +L L+  LP ++ D     +AV++A++ W+ +  + + V++   ++  
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT--  478

Query  481  WIGMGKLTATYYGMIVAHIGFGICLLGVCLDTIYDDQRDLRLELGKPAFAGHLEYELVDV  540
                 K + +Y GM+ AH+G+++ + G+ +   Y  +RD+R+  G +    +  + + +V
Sbjct  479  -----KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  541  SRVRGPNYNGERAEVIVRKDGETISILHPEKRAYFSGGNIMSEVAIDPGFFYDIYIALGE  600
              + GPNY G  A + V ++GE  ++LH+EKR Y ++  +M+E AID G+  D+Y ALGE
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  601  KLDNTSWSMRIHYKPVVRWIWFGAVFMALGGLIAITDKRYKRKKTVA  647
             LDN +W++R+ YKP VRWIW G+++MALGGL+ ++D RY+R+K ++
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLP  640

424) Sput200_0199 in NC_017566


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  410 bits (1544),  Expect = 1e-115, Method: Compositional matrix adjust.
 Identities = 323/647 (50%), Positives = 465/647 (72%), Gaps = 17/647 (2%)

Query  1    MIPELGHFSLIIGVAFAFLLVSVPLIGVARKDQYLVR----YAWPLAYGMFFFISLSVVS  56
            M+PE GH  L ++++ A+LL   PL GVAR D  ++     +AW L    F+ ++ +   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLL----FICVAGAFFV  56

Query  57   LGYSFAVDDFSVAYVAHHSNSQLPIFFKIAAVWGGHEGSLLFWVFSLATWAASVALFSKG  116
            L  +F V+DF+VAYVA +SN+QLP+ +++AA WG+HEGSLL+WV+ ++ W+ +VA+FS+ 
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQ  116

Query  117  LEEVFTARvlavlaviviGFSLFMLLTSSPFERLFPM-PAEGRDLNPMLQDVGLIFHPPM  175
            +   + ARVLAV++++  GF  F+L+TS+PF R +P  P EGRDLNP+LQD GLIFHPP+
Sbjct  117  VPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPL  176

Query  176  LYLGYVGFSVSFAFAIAALMSGRLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELGW  235
            LY+GYVGFSV+FAFAIAAL+SGRLDSA +R +RPWTLAAWVFLT GI LGS WAYYELGW
Sbjct  177  LYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGW  236

Query  236  GGWWFWDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVllsifafslsllGTFIVRS  295
            GGWWFWDPVENASFMPWL GTAL+HS+ VTE+R++F+ WT+LLSI AFSL LLGTF+VRS
Sbjct  237  GGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRS  296

Query  296  GVLTSVHSFAADPSRGMFIllllglaiggsltlFAFRASEMSSPARFELKSKETMLLICN  355
            GVL SVH+FA+DP+RGMFIL ++ L  GGSL LFA R+  + S     L S+E++LL  N
Sbjct  297  GVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNN  356

Query  356  vlltvatgtvllgtlYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFAFMGVGPIIRWKK  415
            VLL  A   VLLGTL PL+   LG+G ISVG P+FN++F  +++ +  ++GVGP++RW +
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  416  SKAGELRRQLLIPALVSVAIGIVTPFIVDGAFNAWVAFGIAAAVWI-ILATARAAYNIVK  474
             ++ ++R+ L  + + ++ ++++ P ++++ + A  A G+A A WI +LA A A   + +
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSR  476

Query  475  PKEGDISVARMGRSQFGMILAHFGIAVSVIGATMVSNYSVEKSVRMGPGVSQELAGYTFK  534
                 +S         GM+ AH+G+AV++ G +   NYSVE+ VRM +G S  + +Y F 
Sbjct  477  GTKTSLSY-------WGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  535  YLETKNVVGPNYTAQQGQIEIYkddklltllkpdRRQYNVRTMDMTEAGIDWGLFRDLYV  594
            + E +++ GPNY +  + I + +++   ++L +++R YN   M MTEA+ID GL RDLY 
Sbjct  530  FREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYA  589

Query  595  TMGDPISATEFAVRLNYKPFVRWLWfgsifmmiggffAASDKRYRSK  641
            ++G+ +     AVRL YKPFVRW+W G+++M +GG++  +D RYR +
Sbjct  590  ALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

425) ccmF in NC_014147


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  407 bits (1532),  Expect = 1e-114, Method: Compositional matrix adjust.
 Identities = 310/646 (48%), Positives = 460/646 (72%), Gaps = 27/646 (4%)

Query  2    LALVLAMLQAILPAIGVIKHQVQWQRLAPSLAMAQFLAMAVSFLALIAGFLYNDFSLVYV  61
            LAL +A+L ++ P  GV + + +    A  +A   F+ +A +F+ L+ +F+ NDF++ YV
Sbjct  12   LALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYV  71

Query  62   AKHSNSLMPWYYKLSATWGGHEGSLLLWMTILATWCMLVAVFSRGLPLQMRARVLSILGG  121
            A +SN+ +P  Y+++ATWG+HEGSLLLW+ +++ W + VAVFSR +P ++ ARVL+++G 
Sbjct  72   AGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGM  131

Query  122  VQVMMLAMMIFTSSPFDRVLPSLPVDGADLNPLLQDPGLIFHPPMLYMGYVGLAVPFAFC  181
            V    LA ++FTS+PF R LP++PV+G DLNPLLQDPGLIFHPP+LYMGYVG++V+FAF 
Sbjct  132  VCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFA  191

Query  182  MAALWAGRLDAVWTRWSRPWTLVAWTFLTLGIALGSWWAYYELGWGGWWFWDPVENASLM  241
            +AAL +GRLD+  TR +RPWTL AW FLTLGI LGS WAYYELGWGGWWFWDPVENAS+M
Sbjct  192  IAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFM  251

Query  242  PWLAATALMHSLAVTEKRGVFKAWTMMLAIFAFALSLLGTFLVRSGVITSVHSFAADPTR  301
            PWLA+TAL+HS+AVTE+R+ FKAWT++L+I AF+L LLGTFLVRSGV+ SVH+FA+DP+R
Sbjct  252  PWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPAR  311

Query  302  GLAVLAILTIVIGFGLLMFALRGWRLTVESSYRLKSRETMlvvnnlvllvatlvvllgtl  361
            G+ +LA++ +V G +LL+FA+RG R+    +  L SRE++L+ NN++L+ A LVVLLGTL
Sbjct  312  GMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTL  371

Query  362  YPIIADFFKLGQVSVGPPYFNALFVPLTWLLLGF---MGVGVVMRYKHDSRPFLATLM-A  417
             P++   + LG +SVG P+FN++F   TWL++ F   +GVG ++R  +D    +  L+ A
Sbjct  372  LPLVHKQLGLGSISVGEPFFNTMF---TWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWA  428

Query  418  CAIGAFVLGSALAYMVSQLAEEPLFDYGIYVSGILSLWVLIFiildikdklkhhkggiFS  477
              + ++VL+  L+ ++    E+ ++     V+  ++ W+ ++ + +  +++ +       
Sbjct  429  AVVTTLVLSVLLPWLL----EDKIIAMTA-VGMAMACWIAVLAVAEAVQRVSRG------  477

Query  478  GLAKLSPSYWGMQIAHIGVIVCMMGVAATSSMSIEKDVAMTVGDSVHVQGYDFYLQEFEM  537
              +K S SYWGM  AH+G+ V + G+A + + S+E+DV M  GDSV +++Y F ++E   
Sbjct  478  --TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRD  535

Query  538  IQGVNYDATQATIIVRQHGRQIAVLYPQKRDYVVSMMPMTEVGIRPSLLNEMYVALGEPI  597
            I G NY +  A I V +HG   AVL ++KR Y  S M MTE +I  +L  ++Y ALGE  
Sbjct  536  ITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE--  593

Query  598  STQNGQVDMNTWAVRVYVKPMVRWIWLGAIIMAVGAFIAILDKRYR  643
                 ++D  +WAVR+Y KP VRWIW G+++MA+G+++ + D RYR
Sbjct  594  -----ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

426) ccmF in NC_006368


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  407 bits (1530),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 306/598 (52%), Positives = 431/598 (73%), Gaps = 3/598 (0%)

Query  45   LQFLFVACAYLCLTACFLMDDFSVIYVLNNSSLLLPWFYKFCAVWGGHEGSMLLWVAILS  104
            L F+ VA A++ L   F+++DF+V YV  NS+  LP  Y+  A WG+HEGS+LLWV ++S
Sbjct  45   LLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMS  104

Query  105  FWMILVCFFSSSLDTEMRARVLVILGWLSIGFILFLLMTSNPFLRQFQVLNTQGRDLNPL  164
             W + V  FS  + +++ ARVL ++G +  GF+ F+L TS PF R +  +  +GRDLNPL
Sbjct  105  GWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPL  164

Query  165  LQDPGFLFHPPMLYMGYVGfcvafafaiaalwaGKVETSWSKWTRPWTLAAWCCLTAGIT  224
            LQDPG++FHPP+LYMGYVGF VAFAFAIAAL +G+++++ ++ +RPWTLAAW  LT GI 
Sbjct  165  LQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIV  224

Query  225  LGSWWAYRELGWGGWWFWDPVENASFMPWLVGTALLHSLAVTEQRQQFKAWTMllaiaaf  284
            LGS WAY ELGWGGWWFWDPVENASFMPWL GTALLHS+AVTEQR  FKAWT+LL+I AF
Sbjct  225  LGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAF  284

Query  285  slsliGTFLVRSGVLTSVHAFAVDPQRGLYILGFLLFVIGGSLTLFLFRAQTLQVNKHPG  344
            SL L+GTFLVRSGVL SVHAFA DP RG++IL+F+++V GGSL LF  R++ ++   + +
Sbjct  285  SLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNA  344

Query  345  LLSRESALLLNNVFLVVIMLTVLMGTVYPLLVEGLGLGKLSVGAPYFNAVFvplmiplll  404
            L SRES LL NNV+L+  ML VL+GT+ PL+   LGLG +SVG P+FN++F  LM+P+ L
Sbjct  345  LWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFAL  404

Query  405  lmglgvrlKWQNDCWRDVFRKLNRifllslilpvillFCTSTEIHLTALLGLILAFWVLL  464
            L+G+G  ++W  D  R++ + L    + +L+L+V+L       I   + +G+ +A W+ +
Sbjct  405  LLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAV  464

Query  465  STANAAYHKVRDRGVAGVGQAYWGMVLAHCGVAATVIGIAVSSAYGVQDDVRMSPGKQVN  524
             +   A ++V  RG +  + +YWGMV AH G+A T+ GIA S  Y+V+ DVRM +G  V 
Sbjct  465  LAVAEAVQRV-SRG-TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVT  522

Query  525  LLDYQIGFINQTPLNGPNYKGTRAEFSIQYQNKTRKIF-PEKRVYTIGQMPMTESAIDVT  583
            + DY++ F +   + GPNY+G  A +++  +     ++ +EKR+Y  ++M MTE+AID  
Sbjct  523  IHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGG  582

Query  584  PFRDIYIALGEPLSEDAWSVRIYYKPLVRWIWAGGFMILAGGVLALTDRRYYRKRQVT  641
              RD+Y ALGE L ++AW+VR+YYKP+VRWIWAGG+++  GG+L L+D RY R++ + 
Sbjct  583  LTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLP  640

427) LPE509_02352 in NC_020521


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  407 bits (1530),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 306/598 (52%), Positives = 431/598 (73%), Gaps = 3/598 (0%)

Query  45   LQFLFVACAYLCLTACFLMDDFSVIYVLNNSSLLLPWFYKFCAVWGGHEGSMLLWVAILS  104
            L F+ VA A++ L   F+++DF+V YV  NS+  LP  Y+  A WG+HEGS+LLWV ++S
Sbjct  45   LLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMS  104

Query  105  FWMILVCFFSSSLDTEMRARVLVILGWLSIGFILFLLMTSNPFLRQFQVLNTQGRDLNPL  164
             W + V  FS  + +++ ARVL ++G +  GF+ F+L TS PF R +  +  +GRDLNPL
Sbjct  105  GWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPL  164

Query  165  LQDPGFLFHPPMLYMGYVGfcvafafaiaalwaGKVETSWSKWTRPWTLAAWCCLTAGIT  224
            LQDPG++FHPP+LYMGYVGF VAFAFAIAAL +G+++++ ++ +RPWTLAAW  LT GI 
Sbjct  165  LQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIV  224

Query  225  LGSWWAYRELGWGGWWFWDPVENASFMPWLVGTALLHSLAVTEQRQQFKAWTMllaiaaf  284
            LGS WAY ELGWGGWWFWDPVENASFMPWL GTALLHS+AVTEQR  FKAWT+LL+I AF
Sbjct  225  LGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAF  284

Query  285  slsliGTFLVRSGVLTSVHAFAVDPQRGLYILGFLLFVIGGSLTLFLFRAQTLQVNKHPG  344
            SL L+GTFLVRSGVL SVHAFA DP RG++IL+F+++V GGSL LF  R++ ++   + +
Sbjct  285  SLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNA  344

Query  345  LLSRESALLLNNVFLVVIMLTVLMGTVYPLLVEGLGLGKLSVGAPYFNAVFvplmiplll  404
            L SRES LL NNV+L+  ML VL+GT+ PL+   LGLG +SVG P+FN++F  LM+P+ L
Sbjct  345  LWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFAL  404

Query  405  lmglgvrlKWQNDCWRDVFRKLNRifllslilpvillFCTSTEIHLTALLGLILAFWVLL  464
            L+G+G  ++W  D  R++ + L    + +L+L+V+L       I   + +G+ +A W+ +
Sbjct  405  LLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAV  464

Query  465  STANAAYHKVRDRGVAGVGQAYWGMVLAHCGVAATVIGIAVSSAYGVQDDVRMSPGKQVN  524
             +   A ++V  RG +  + +YWGMV AH G+A T+ GIA S  Y+V+ DVRM +G  V 
Sbjct  465  LAVAEAVQRV-SRG-TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVT  522

Query  525  LLDYQIGFINQTPLNGPNYKGTRAEFSIQYQNKTRKIF-PEKRVYTIGQMPMTESAIDVT  583
            + DY++ F +   + GPNY+G  A +++  +     ++ +EKR+Y  ++M MTE+AID  
Sbjct  523  IHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGG  582

Query  584  PFRDIYIALGEPLSEDAWSVRIYYKPLVRWIWAGGFMILAGGVLALTDRRYYRKRQVT  641
              RD+Y ALGE L ++AW+VR+YYKP+VRWIWAGG+++  GG+L L+D RY R++ + 
Sbjct  583  LTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLP  640

428) ccmF in NC_002942


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  407 bits (1530),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 306/598 (52%), Positives = 431/598 (73%), Gaps = 3/598 (0%)

Query  45   LQFLFVACAYLCLTACFLMDDFSVIYVLNNSSLLLPWFYKFCAVWGGHEGSMLLWVAILS  104
            L F+ VA A++ L   F+++DF+V YV  NS+  LP  Y+  A WG+HEGS+LLWV ++S
Sbjct  45   LLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMS  104

Query  105  FWMILVCFFSSSLDTEMRARVLVILGWLSIGFILFLLMTSNPFLRQFQVLNTQGRDLNPL  164
             W + V  FS  + +++ ARVL ++G +  GF+ F+L TS PF R +  +  +GRDLNPL
Sbjct  105  GWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPL  164

Query  165  LQDPGFLFHPPMLYMGYVGfcvafafaiaalwaGKVETSWSKWTRPWTLAAWCCLTAGIT  224
            LQDPG++FHPP+LYMGYVGF VAFAFAIAAL +G+++++ ++ +RPWTLAAW  LT GI 
Sbjct  165  LQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIV  224

Query  225  LGSWWAYRELGWGGWWFWDPVENASFMPWLVGTALLHSLAVTEQRQQFKAWTMllaiaaf  284
            LGS WAY ELGWGGWWFWDPVENASFMPWL GTALLHS+AVTEQR  FKAWT+LL+I AF
Sbjct  225  LGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAF  284

Query  285  slsliGTFLVRSGVLTSVHAFAVDPQRGLYILGFLLFVIGGSLTLFLFRAQTLQVNKHPG  344
            SL L+GTFLVRSGVL SVHAFA DP RG++IL+F+++V GGSL LF  R++ ++   + +
Sbjct  285  SLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNA  344

Query  345  LLSRESALLLNNVFLVVIMLTVLMGTVYPLLVEGLGLGKLSVGAPYFNAVFvplmiplll  404
            L SRES LL NNV+L+  ML VL+GT+ PL+   LGLG +SVG P+FN++F  LM+P+ L
Sbjct  345  LWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFAL  404

Query  405  lmglgvrlKWQNDCWRDVFRKLNRifllslilpvillFCTSTEIHLTALLGLILAFWVLL  464
            L+G+G  ++W  D  R++ + L    + +L+L+V+L       I   + +G+ +A W+ +
Sbjct  405  LLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAV  464

Query  465  STANAAYHKVRDRGVAGVGQAYWGMVLAHCGVAATVIGIAVSSAYGVQDDVRMSPGKQVN  524
             +   A ++V  RG +  + +YWGMV AH G+A T+ GIA S  Y+V+ DVRM +G  V 
Sbjct  465  LAVAEAVQRV-SRG-TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVT  522

Query  525  LLDYQIGFINQTPLNGPNYKGTRAEFSIQYQNKTRKIF-PEKRVYTIGQMPMTESAIDVT  583
            + DY++ F +   + GPNY+G  A +++  +     ++ +EKR+Y  ++M MTE+AID  
Sbjct  523  IHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGG  582

Query  584  PFRDIYIALGEPLSEDAWSVRIYYKPLVRWIWAGGFMILAGGVLALTDRRYYRKRQVT  641
              RD+Y ALGE L ++AW+VR+YYKP+VRWIWAGG+++  GG+L L+D RY R++ + 
Sbjct  583  LTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLP  640

429) ccmF in NC_018140


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  407 bits (1530),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 306/598 (52%), Positives = 431/598 (73%), Gaps = 3/598 (0%)

Query  45   LQFLFVACAYLCLTACFLMDDFSVIYVLNNSSLLLPWFYKFCAVWGGHEGSMLLWVAILS  104
            L F+ VA A++ L   F+++DF+V YV  NS+  LP  Y+  A WG+HEGS+LLWV ++S
Sbjct  45   LLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMS  104

Query  105  FWMILVCFFSSSLDTEMRARVLVILGWLSIGFILFLLMTSNPFLRQFQVLNTQGRDLNPL  164
             W + V  FS  + +++ ARVL ++G +  GF+ F+L TS PF R +  +  +GRDLNPL
Sbjct  105  GWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPL  164

Query  165  LQDPGFLFHPPMLYMGYVGfcvafafaiaalwaGKVETSWSKWTRPWTLAAWCCLTAGIT  224
            LQDPG++FHPP+LYMGYVGF VAFAFAIAAL +G+++++ ++ +RPWTLAAW  LT GI 
Sbjct  165  LQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIV  224

Query  225  LGSWWAYRELGWGGWWFWDPVENASFMPWLVGTALLHSLAVTEQRQQFKAWTMllaiaaf  284
            LGS WAY ELGWGGWWFWDPVENASFMPWL GTALLHS+AVTEQR  FKAWT+LL+I AF
Sbjct  225  LGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAF  284

Query  285  slsliGTFLVRSGVLTSVHAFAVDPQRGLYILGFLLFVIGGSLTLFLFRAQTLQVNKHPG  344
            SL L+GTFLVRSGVL SVHAFA DP RG++IL+F+++V GGSL LF  R++ ++   + +
Sbjct  285  SLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNA  344

Query  345  LLSRESALLLNNVFLVVIMLTVLMGTVYPLLVEGLGLGKLSVGAPYFNAVFvplmiplll  404
            L SRES LL NNV+L+  ML VL+GT+ PL+   LGLG +SVG P+FN++F  LM+P+ L
Sbjct  345  LWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFAL  404

Query  405  lmglgvrlKWQNDCWRDVFRKLNRifllslilpvillFCTSTEIHLTALLGLILAFWVLL  464
            L+G+G  ++W  D  R++ + L    + +L+L+V+L       I   + +G+ +A W+ +
Sbjct  405  LLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAV  464

Query  465  STANAAYHKVRDRGVAGVGQAYWGMVLAHCGVAATVIGIAVSSAYGVQDDVRMSPGKQVN  524
             +   A ++V  RG +  + +YWGMV AH G+A T+ GIA S  Y+V+ DVRM +G  V 
Sbjct  465  LAVAEAVQRV-SRG-TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVT  522

Query  525  LLDYQIGFINQTPLNGPNYKGTRAEFSIQYQNKTRKIF-PEKRVYTIGQMPMTESAIDVT  583
            + DY++ F +   + GPNY+G  A +++  +     ++ +EKR+Y  ++M MTE+AID  
Sbjct  523  IHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGG  582

Query  584  PFRDIYIALGEPLSEDAWSVRIYYKPLVRWIWAGGFMILAGGVLALTDRRYYRKRQVT  641
              RD+Y ALGE L ++AW+VR+YYKP+VRWIWAGG+++  GG+L L+D RY R++ + 
Sbjct  583  LTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLP  640

430) Rpic_2852 in NC_010682


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  406 bits (1527),  Expect = 3e-114, Method: Compositional matrix adjust.
 Identities = 334/625 (54%), Positives = 452/625 (73%), Gaps = 12/625 (1%)

Query  1    MIAELGHFALILALLTAAMQSVLPLVGAARDDERWMAVARPAARMQCALVLVAYGALTWA  60
            M++E GH  L LAL  A + SV PL G AR+D R MA A   A++    V  A+  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVSNDFSVLYVAANSNSALPLPYRVAAVWGGHEGSMLLWTAMLALWSLAVSLFSRQLPLP  120
            FV NDF+V YVA+NSN+ LP+ YRVAA WG+HEGS+LLW  +++ W+LAV++FSRQ+P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  VVARVLGVMGAISTGLLLFLLFASNPFLRLLPP-ALEGRDLNPLLQDPGMVSHPPMLYMG  179
            +VARVL+VMG + +G+L F+LF+S PF R LP+ ++EGRDLNPLLQDPG++ HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFAVAFSFAMAALLSGRLDATWARWSRPWTTAAWACLTTGIMLGSAWAYYELGWGGWW  239
            YVGF+VAF+FA+AALLSGRLD++ +R +RPWT AAW  LT GI+LGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASFMPWLAGTALIHSLAVTEKRGVFRAWTALLAIftfslsllgtflVRSGVLT  299
            FWDPVENASFMPWLAGTAL+HS+AVTE+R+ F+AWT LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFAVDPKRGLFILALLGIVTGGALGLFAWRAKRLSSSASEGATFPLFARESFllann  359
            SVHAFA DP RG+FILA++ +VTGG+L LFA R+ R+ S  +++    L +RES+LL+NN
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNA----LWSRESLLLGNN  356

Query  360  vllavaaatvllgtlypllldvlRLGKISVGQAYFEQVFVPLMSPAVLLMGAAPLARWRH  419
            VLL  A   VLLGTL PL+   L LG ISVG+++F+ +F  LM P  LL+G +PL RW +
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  420  GALPSMAVRLRWaavasvavglglav-lYRTSalaglgltlaaWCLVSALASLAEKLRQP  478
            +  P    +L WAAV +  V   L   L     +A  ++ +A  C ++ LA     + ++
Sbjct  417  DR-PRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLA-----VAEA  470

Query  479  GNRLTTLRQLPPSYFGMLVAHAGVGVFIAGVTLVLSQETLRELPVRVGGKVEVGGYMFHL  538
             +R++   + + SY GM+ AH G++V I+G+++  +    R++ +R G+ V + +Y F +
Sbjct  471  VQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTF  530

Query  539  ASVAPAQGPNYDVLRGHVDVSRNGKPVATLLPERRLYHSQENPTTEVAIDSGITRDLYVA  598
              V    GPNY    + ++V+R+G P A L +E+RLY++     TE AID+G+TRDLY A
Sbjct  531  REVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAA  590

Query  599  LGESLGQDNWAMRIYIKPFVGWIWA  623
            LGE L+++ WA+R+Y KPFV WIWA
Sbjct  591  LGEELDNGAWAVRLYYKPFVRWIWA  615

431) PsycPRwf_0802 in NC_009524


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  406 bits (1526),  Expect = 3e-114, Method: Compositional matrix adjust.
 Identities = 320/656 (49%), Positives = 462/656 (71%), Gaps = 26/656 (3%)

Query  2    VITELGYFALVASMVLALLQVVLPTFGIVRQQPHLQRLAPSLAWAQFVAVGLSFLALMAG  61
            ++ E G   L  ++ +ALL  V P  G+ R ++++   A  +AW  F+ V+ +F+ L+ +
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  62   FYYNDFTLVYVAQHSNSLLPWYYKLSATWGGHEGSLLLWVTILAGWSSMVAWFSRGLPLN  121
            F  NDFT+ YVA +SN+ LP  Y+++ATWG+HEGSLLLWV +++GW+  VA FSR +P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  122  MRARvlvilaavqlmmlamliFTSSPFDRTLPNVPVDGADLTPLLQDPGLIFHPPMLYMG  181
            + ARVL +++ V    LA ++FTS+PF RTLP  PV+G DL PLLQDPGLIFHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  182  YVGMAVPFAFCMAALWAGRLDAVWTRWSRPWALAAWGFLTLGIALGSWWAYYELGWGGWW  241
            YVG +V+FAF +AAL +GRLD+  TR +RPW+LAAW FLTLGI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  242  FWDPVENASLMPWLACTALIHSLAVTEKRGVFKAWTIMLSIFAFALSLLGTFLVRSGVIT  301
            FWDPVENAS+MPWLA TAL+HS+AVTE+R+ FKAWT++LSI AF+L LLGTFLVRSGV+ 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  302  SVHSFAADPTRGLAILAILGVVIGSGLFVFAVRGWRLTVESHYGLKSREtllvinnivil  361
            SVH+FA+DP+RG+ ILA++ +V G++L++FAVRG R+    + +L SRE+LL+ NN++++
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  362  vatlvvllgtlYPIIADSFNLGQVSVGPPYFNALFVPLAWLIL---LTMGMGSNLRWKQD  418
             A LVVLLGTL P++   + LG +SVG P+FN++F   +WL++   L +G+G+ +RW +D
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMF---TWLMVPFALLLGVGPLVRWGRD  417

Query  419  K----RPLL-GAATTILVSSALLAGIITYLITKSLNVQIIITGLLCLWVLGWMLYDIKEK  473
            +    R LL +A  T LV S LL+ +   L  K + +  +  ++ C W+       +   
Sbjct  418  RPRNIRKLLWAAVVTTLVLSVLLPWL---LEDKIIAMTAVGMAMAC-WI------AVLAV  467

Query  474  TRNAPSLGRGLKRLKAHYWGMQIAHvgvlivalgigvTTALSVEKDVAMTVGDTVDVNDY  533
            +     ++RG K     YWGM  AH+G+ +   GI+ +   SVE+DV M  GD+V ++DY
Sbjct  468  AEAVQRVSRGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  534  HFTLVDFEQVRGKNYDATQAEIKVEKDGKFVTTLYPQKRDYVVSSMPMTEAGIQTTMLRD  593
            +FT+ +  ++ G NY +  A I V ++G   + L ++KR Y  S M MTEA+I+  + RD
Sbjct  527  RFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  594  VYVALGEPINVNEPEGNWAVRVYVKPMIAWLWLGAIVMALGGIISMLDRRYRLKKS  649
            +Y ALGE ++    +G WAVR+Y KP + W+W G+++MALGG++ + D RYR +K+
Sbjct  587  LYAALGEELD----NGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKP  638

432) Mpe_A1211 in NC_008825


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  404 bits (1521),  Expect = 8e-114, Method: Compositional matrix adjust.
 Identities = 345/625 (56%), Positives = 464/625 (75%), Gaps = 13/625 (2%)

Query  24   PLLGAARGRADWMALARPAAQTQFLLVALAFGCLVASFVRHDFSVLNVATNSNSALPLFY  83
            PL G ARG A  MA A   A   F+ VA AF  LV +FV +DF+V  VA NSN+ LP+ Y
Sbjct  24   PLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWY  83

Query  84   RIAASWGSHEGslllwvlmlsswtlAVALRSRHLPVPVVSRILAVMGLISVGFLLFMLIT  143
            R+AA+WG+HEGSLLLWVL++S+WTLAVA+ SR++P  +V+R+LAVMG++  GFL F+L+T
Sbjct  84   RVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFT  143

Query  144  SNPFDRLFPV-PPDGNDLNPLLQDPGMIVHPPMLYMGYvgfsvafafavaallggtlDat  202
            S PF R +P  P +G DLNPLLQDPG+I HPP+LYMGYVGFSVAFAFA+AALL+G LD++
Sbjct  144  SGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSA  203

Query  203  warwtrpwttaawaFLTLGIMLGSTWAYYVLGWGGWWFWDPVENASFLPWLAGTALIHSL  262
             +R +RPWT AAW FLTLGI+LGS+WAYY LGWGGWWFWDPVENASF+PWLAGTAL+HS+
Sbjct  204  FTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSM  263

Query  263  AVTEKRGAFKSWTVLLAIVAFSLSLLGTFLVRSGVLSSVHAFATDPQRglfillflvivi  322
            AVTE+R++FK+WT+LL+I AFSL LLGTFLVRSGVL SVHAFA+DP RG+FIL F+V+V 
Sbjct  264  AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVT  323

Query  323  ggSLTLYAWRAPKVGLGARFGVVSRESMLLANNVLFVVATLSVLLGTLYPLLLDAMGLGK  382
            GGSL L+A R+ +V      ++ SRES+LL+NNVL++ A L VLLGTL PL+   +GLG 
Sbjct  324  GGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGS  383

Query  383  ISVGPPYFDAVFVPLMAPAVFLLGVGPLARWKQAELPDlarrlrwaaaiavvaallTGW-  441
            ISVG P+F+++F  LM P  +LLGVGPL RW +    ++ + L+ A   ++V ++L  W 
Sbjct  384  ISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWL  443

Query  442  LAGRIALGATLGLLMSYWIVAALGVDLWERLRPAGGLPMSLAARARQLPRAMLGMMLAHL  501
            L ++I   +++G+ M+ WI A L+V          + ++   +R+ + + +  GM+ AHL
Sbjct  444  LEDKIIAMTAVGMAMACWI-AVLAV----------AEAVQRVSRGTKTSLSYWGMVAAHL  492

Query  502  GVAVFAFGVSMVTTYQLERDVKMAIGDTTEAGGFVFALRGLKEIQGPNYDGLQGQIEVTR  561
            G+AV   G++    Y +ERDV+M  GD+    ++ F++R +++I GPNY G  + I VTR
Sbjct  493  GLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTR  552

Query  562  DGKAVALLKPEKRIYRVQRNPMTEADINRGITRDLYVSLGEPTADGSWIVRVYFKPFVNW  621
            +G + A+L +EKR+Y   R  MTEA I+ G+TRDLY +LGE   +G+W VR+Y+KPFV W
Sbjct  553  HGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRW  612

Query  622  IWGGCVLMALGGALAASDRRYRARQ  646
            IW+G +LMALGG L  +D RYR R+
Sbjct  613  IWAGGLLMALGGLLCLADPRYRRRK  637

433) ccmF in NC_018139


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  404 bits (1521),  Expect = 8e-114, Method: Compositional matrix adjust.
 Identities = 305/597 (52%), Positives = 430/597 (73%), Gaps = 3/597 (0%)

Query  45   LQFLFVACAYLCLTACFLMDDFSVIYVLNNSSLLLPWFYKFCAVWGGHEGSMLLWVAILS  104
            L F+ VA A++ L   F+++DF+V YV  NS+  LP  Y+  A WG+HEGS+LLWV ++S
Sbjct  45   LLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMS  104

Query  105  FWMILVCFFSSSLDTEMRARVLVILGWLSIGFILFLLMTSNPFLRQFQVLNTQGRDLNPL  164
             W + V  FS  + +++ ARVL ++G +  GF+ F+L TS PF R +  +  +GRDLNPL
Sbjct  105  GWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPL  164

Query  165  LQDPGFLFHPPMLYMGYVGfcvafafaiaalwaGKVETSWSKWTRPWTLAAWCCLTAGIT  224
            LQDPG++FHPP+LYMGYVGF VAFAFAIAAL +G+++++ ++ +RPWTLAAW  LT GI 
Sbjct  165  LQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIV  224

Query  225  LGSWWAYRELGWGGWWFWDPVENASFMPWLVGTALLHSLAVTEQRQQFKAWTMllaiaaf  284
            LGS WAY ELGWGGWWFWDPVENASFMPWL GTALLHS+AVTEQR  FKAWT+LL+I AF
Sbjct  225  LGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAF  284

Query  285  slsliGTFLVRSGVLTSVHAFAVDPQRGLYILGFLLFVIGGSLTLFLFRAQTLQVNKHPG  344
            SL L+GTFLVRSGVL SVHAFA DP RG++IL+F+++V GGSL LF  R++ ++   + +
Sbjct  285  SLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNA  344

Query  345  LLSRESALLLNNVFLVVIMLTVLMGTVYPLLVEGLGLGKLSVGAPYFNAVFvplmiplll  404
            L SRES LL NNV+L+  ML VL+GT+ PL+   LGLG +SVG P+FN++F  LM+P+ L
Sbjct  345  LWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFAL  404

Query  405  lmglgvrlKWQNDCWRDVFRKLNRifllslilpvillFCTSTEIHLTALLGLILAFWVLL  464
            L+G+G  ++W  D  R++ + L    + +L+L+V+L       I   + +G+ +A W+ +
Sbjct  405  LLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAV  464

Query  465  STANAAYHKVRDRGVAGVGQAYWGMVLAHCGVAATVIGIAVSSAYGVQDDVRMSPGKQVN  524
             +   A ++V  RG +  + +YWGMV AH G+A T+ GIA S  Y+V+ DVRM +G  V 
Sbjct  465  LAVAEAVQRV-SRG-TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVT  522

Query  525  LLDYQIGFINQTPLNGPNYKGTRAEFSIQYQNKTRKIF-PEKRVYTIGQTPMTESAIDVT  583
            + DY++ F +   + GPNY+G  A +++  +     ++ +EKR+Y  ++  MTE+AID  
Sbjct  523  IHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGG  582

Query  584  PFRDIYIALGEPLSEDAWSVRIYYKPLVRWIWAGGFMILAGGVLALTDRRYYRKRQV  640
              RD+Y ALGE L ++AW+VR+YYKP+VRWIWAGG+++  GG+L L+D RY R++ +
Sbjct  583  LTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPL  639

434) Thivi_3067 in NC_018012


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  403 bits (1518),  Expect = 1e-113, Method: Compositional matrix adjust.
 Identities = 335/654 (52%), Positives = 458/654 (71%), Gaps = 12/654 (1%)

Query  1    MVPELGHFALILALMLALVQASVPLLGTFSGNRAWMELARPLAWGQLTFIGISFLCLLQA  60
            M+PE GH  L LAL +AL+ +  PL G   G+   M  A  +AW  +  ++ +F+ L++A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FLIDDFSVIYVATNSNSLMPTAYKVSAIWGAHEGSLLLWVLMLAGWGAAVAAFSKNLPLP  120
            F+++DF+V YVA NSN+ +P  Y+V+A WGAHEGSLLLWVL+++GW  AVA FS+++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MIARVISVQGMVAIGFLLFMVLTSNPFDRIFPV-PLEGRDLNPLLQDPGLAIHPPMLYMG  179
            ++ARV++V GMV  GFL F+++TS PF R +P  P+EGRDLNPLLQDPGL +HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVafafaiaaliggklDSAWARWSRPWTTAAWIFLTIGVALGSWWAYYELGWGGWW  239
            YVGFSVAFAFAIAAL++G+LDSA +R +RPWT AAW+FLT+G+ LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASFMPWLVGTALMHSLAVTEKRAAFKNWTVllaisafslsllGTFLVRSGVLT  299
            FWDPVENASFMPWL GTAL+HS+AVTE+RA+FK WT+LL+I AFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFATDPTRGTFILIFLCIVIGGSLALYAWRAPAISGGGRFDLVSRETfllinnllla  359
            SVHAFA+DP+RG FIL F+ +V GGSL L+A R+  + +     L SRE++LL NN+LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  tlavlvlfgtlAPLIYDAAGWGKISVGFPWFNKMFVFLSPLLILAMGIGPLTHWKHDEPK  419
            +  ++VL+GTL PL+    G G ISVG P FN MF  L   + L +G+GPL +W +D P+
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  rllrslwlalalgiltliVTTSSLVPAGQLAVGFGLGMAVWLVATHLISLFDRLRHRGWL  479
             + + LW A+   ++  ++    L        + G++MA W+    +    +R+      
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  480  KGLAADLGGNSRSYYGMWLAHLGVAVFIVGVTMVSNQGTETDIRMSPGGVHEDSGHRFQF  539
            +G  + L     SY GM  AHLG+AV I G++   N + E D+RM +G+     + RF F
Sbjct  476  RGTKTSL-----SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTF  530

Query  540  NGVEMVKGPNYDAFRGEFVVYQGEREITRLYPEKRKYFSGGMPMTEAGIDAGFLRDIYIS  599
              V  + GPNY +  + + V +     + L +EKR Y ++ M MTEA+ID+G+ RD+Y +
Sbjct  531  REVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAA  590

Query  600  LGEPIGVSGDWALRVYYKPYVRWIWLGCILMALGGVLAITDRRYRTAPARVGAG  653
            LGE ++ +G WA+R+YYKP+VRWIW G +LMALGG+L ++D RYR   +   AG
Sbjct  591  LGEELD-NGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

435) ccmF in NC_006369


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  403 bits (1518),  Expect = 2e-113, Method: Compositional matrix adjust.
 Identities = 318/642 (50%), Positives = 455/642 (71%), Gaps = 3/642 (0%)

Query  1    MIAELGLFFLILALVASLMLALIPLAGLQFNRKDWIDSSRNYVVLQFLFVACAYLCLTAC  60
            M++E G  +L LAL  +L+L++ PL G+       + S+  +  L F+ VA A++ L   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FLMDDFsvnyvlnnsslllPWFYKFCAVWGGHEGSMLLWVAILSFWMILVCFFSSSLDTE  120
            F+++DF+V YV  NS+  LP  Y+  A WG+HEGS+LLWV ++S W + V  FS  + ++
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MRARVLVILGWLSIGFILFLLMTSNPFLRQFQVLNTQGRDLNPLLQDPGFLFHPPMLYMG  180
            + ARVL ++G +  GF+ F+L TS PF R +  +  +GRDLNPLLQDPG++FHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGfcvafafaiaalwaGKVETSWSKWTRPWTLAAWCCLTAGITLGSWWAYRELGWGGWW  240
            YVGF VAFAFAIAAL +G+++++ ++ +RPWTLAAW  LT GI LGS WAY ELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALLHSLAVTEQRQQFKAWTMllaiaafslsliGTFLVRSGVLT  300
            FWDPVENASFMPWL GTALLHS+AVTEQR  FKAWT+LL+I AFSL L+GTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFAVDPQRGLYILGFLLFVIGGSLTLFLFRAQTLQVNKHPGLLSRESALLLNNVFLV  360
            SVHAFA DP RG++IL+F+++V GGSL LF  R++ ++   + +L SRES LL NNV+L+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  VIMLTVLMGTVYPLLVEGLGLGKLSVGAPYFNAVFvplmipllllmglgvrlKWQNDCWR  420
              ML VL+GT+ PL+   LGLG +SVG P+FN++F  LM+P+ LL+G+G  ++W  D  R
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  DVFRKLNRifllslilpvillFCTSTEIHLTALLGLILAFWVLLSTVNAAYHKVRDREMA  480
            ++ + L    + +L+L+V+L       I   + +G+ +A W+ + +V  A ++V     +
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  481  GVGQAYWGMVLAHCGVAATVIGIAVSSAYGVQDDVRMSPGKQVNLLDYQIGFINQTPLNG  540
            ++  +YWGMV AH G+A T+ GIA S  Y+V+ DVRM +G  V + DY++ F +   + G
Sbjct  481  SL--SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITG  538

Query  541  PNYKGTRAEFSIQYQNKTRQIF-PEKRVYTIGQMPMTESAIDVTPFRDIYIALGEPLSED  599
            PNY+G  A +++  +     ++ +EKR+Y  ++M MTE+AID    RD+Y ALGE L ++
Sbjct  539  PNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG  598

Query  600  AWSVRIYYKPLVRWIWAGGFMILAGGVLALTDRRYYRKRQVT  641
            AW+VR+YYKP+VRWIWAGG+++  GG+L L+D RY R++ + 
Sbjct  599  AWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLP  640

436) PputW619_3648 in NC_010501


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  403 bits (1515),  Expect = 3e-113, Method: Compositional matrix adjust.
 Identities = 302/538 (57%), Positives = 417/538 (78%), Gaps = 7/538 (1%)

Query  88   YKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQVMLARVLAVMGMISVGFLSFLII  147
            Y+ +A WGAHEGSLLLW L+++GWT+AV+VFSRQ+P  ++ARVLAVMGM+  GFL+F+++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  148  TSNPFQRLLPQVPTDGRDLNPLLQDFGLIVHPPMLYMGYVgfsvafafaiaallggrlDA  207
            TS PF R LP  P +GRDLNPLLQD GLI HPP+LYMGYVGFSVAFAFAIAALL+GRLD+
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  208  AWARWSRPWTIIAWAFLGVGITLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHS  267
            A +R +RPWT+ AW FL +GI LGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  268  LAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLTSVHAFASDPSRGVFILIFLLFV  327
            +AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL SVHAFASDP+RG+FIL F+++V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  328  VGGSLTLFALRAPVVKSQVGFSLWSRETlllannlvlvvaaSMILLGTLYPLVLDALTGA  387
             GGSL LFA+R+  V+S+V  +LWSRE+LLL+NN++L+ A  ++LLGTL PLV   L  +
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  388  KLSVGPPYFDALFLPlmallmvvlgigvvvRWKDTPGKWLASMMTPVLIASAVLAPVAG-  446
             +SVG P+F+++F  LM  + ++LG+G +VRW     + +  ++ + ++++ VL+ +   
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  447  FIVDDFDWPTLTAFALAAWVVLSGLRDIFDKTRHKGLAKGVRGLTRSYWGMQlahlglav  506
            ++ D +   T  + A+A W+ + ++ +  ++     +++G +  + SYWGM  AHLGLAV
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQR-----VSRGTKT-SLSYWGMVAAHLGLAV  496

Query  507  calgvvlSSNNSAERDLRLAPGESVELGGYQFLFQGAKHFEGPNFISDKGTVVVSRDGRE  566
               G+ +S N S ERD+R+ +G+SV + +Y+F F+  +++ GPN+ ++ + + V+R+G  
Sbjct  497  TITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEP  556

Query  567  VTTLHPEKRLYTVQQSMMTEAGIDAGFTRDLYVALGEPLDNGAWAVRVHIKPYVRWIW  624
             + LH+EKRLY   + +MTEA+ID+G+TRDLY ALGE LDNGAWAVR+  KP+VRWIW
Sbjct  557  EAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

437) lp12_0883 in NC_016811


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  402 bits (1514),  Expect = 3e-113, Method: Compositional matrix adjust.
 Identities = 319/642 (50%), Positives = 456/642 (72%), Gaps = 3/642 (0%)

Query  1    MIAELGLFFLILALVASLMLALIPLAGLQFNRKDWIDSSRNYVVLQFLFVACAYLCLTAC  60
            M++E G  +L LAL  +L+L++ PL G+       + S+  +  L F+ VA A++ L   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FLMDDFsvnyvlnnsslllPWFYKFCAVWGGHEGSMLLWVAILSFWMILVCFFSSSLDTE  120
            F+++DF+V YV  NS+  LP  Y+  A WG+HEGS+LLWV ++S W + V  FS  + ++
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MRARVLVILGWLSIGFILFLLMTSNPFLRQFQVLNTQGRDLNPLLQDPGFLFHPPMLYMG  180
            + ARVL ++G +  GF+ F+L TS PF R +  +  +GRDLNPLLQDPG++FHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGfcvafafaiaalwaGKVETSWSKWTRPWTLAAWCCLTAGITLGSWWAYRELGWGGWW  240
            YVGF VAFAFAIAAL +G+++++ ++ +RPWTLAAW  LT GI LGS WAY ELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALLHSLAVTEQRQQFKAWTMllaiaafslsliGTFLVRSGVLT  300
            FWDPVENASFMPWL GTALLHS+AVTEQR  FKAWT+LL+I AFSL L+GTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFAVDPQRGLYILGFLLFVIGGSLTLFLFRAQTLQVNKHPGLLSRESALLLNNVFLV  360
            SVHAFA DP RG++IL+F+++V GGSL LF  R++ ++   + +L SRES LL NNV+L+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  VIMLTVLMGTVYPLLVEGLGLGKLSVGAPYFNAVFvplmipllllmglgvrlKWQNDCWR  420
              ML VL+GT+ PL+   LGLG +SVG P+FN++F  LM+P+ LL+G+G  ++W  D  R
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  DVFRKLNRifllslilpvillFCTSTEIHLTALLGLILAFWVLLSTANAAYHKVRDRGVA  480
            ++ + L    + +L+L+V+L       I   + +G+ +A W+ + +   A ++V  RG +
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV-SRG-T  478

Query  481  GVGQAYWGMVLAHCGVAATVIGIAVSSAYGVQDDVRMSPGKQVNLLDYQIGFINQTPLSG  540
              + +YWGMV AH G+A T+ GIA S  Y+V+ DVRM +G  V + DY++ F +   ++G
Sbjct  479  KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITG  538

Query  541  PNYKGTRAEFSIQYQNKTRQIF-PEKRVYTIGQMPMTESAIDVTPFRDIYIALGEPLSED  599
            PNY+G  A +++  +     ++ +EKR+Y  ++M MTE+AID    RD+Y ALGE L ++
Sbjct  539  PNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG  598

Query  600  AWSVRIYYKPLVRWIWAGGFMILAGGVLALTDRRYYRKRQVT  641
            AW+VR+YYKP+VRWIWAGG+++  GG+L L+D RY R++ + 
Sbjct  599  AWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLP  640

438) ccmF in NC_021350


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  402 bits (1514),  Expect = 3e-113, Method: Compositional matrix adjust.
 Identities = 319/642 (50%), Positives = 456/642 (72%), Gaps = 3/642 (0%)

Query  1    MIAELGLFFLILALVASLMLALIPLAGLQFNRKDWIDSSRNYVVLQFLFVACAYLCLTAC  60
            M++E G  +L LAL  +L+L++ PL G+       + S+  +  L F+ VA A++ L   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FLMDDFsvnyvlnnsslllPWFYKFCAVWGGHEGSMLLWVAILSFWMILVCFFSSSLDTE  120
            F+++DF+V YV  NS+  LP  Y+  A WG+HEGS+LLWV ++S W + V  FS  + ++
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MRARVLVILGWLSIGFILFLLMTSNPFLRQFQVLNTQGRDLNPLLQDPGFLFHPPMLYMG  180
            + ARVL ++G +  GF+ F+L TS PF R +  +  +GRDLNPLLQDPG++FHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGfcvafafaiaalwaGKVETSWSKWTRPWTLAAWCCLTAGITLGSWWAYRELGWGGWW  240
            YVGF VAFAFAIAAL +G+++++ ++ +RPWTLAAW  LT GI LGS WAY ELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALLHSLAVTEQRQQFKAWTMllaiaafslsliGTFLVRSGVLT  300
            FWDPVENASFMPWL GTALLHS+AVTEQR  FKAWT+LL+I AFSL L+GTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFAVDPQRGLYILGFLLFVIGGSLTLFLFRAQTLQVNKHPGLLSRESALLLNNVFLV  360
            SVHAFA DP RG++IL+F+++V GGSL LF  R++ ++   + +L SRES LL NNV+L+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  VIMLTVLMGTVYPLLVEGLGLGKLSVGAPYFNAVFvplmipllllmglgvrlKWQNDCWR  420
              ML VL+GT+ PL+   LGLG +SVG P+FN++F  LM+P+ LL+G+G  ++W  D  R
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  DVFRKLNRifllslilpvillFCTSTEIHLTALLGLILAFWVLLSTANAAYHKVRDRGVA  480
            ++ + L    + +L+L+V+L       I   + +G+ +A W+ + +   A ++V  RG +
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV-SRG-T  478

Query  481  GVGQAYWGMVLAHCGVAATVIGIAVSSAYGVQDDVRMSPGKQVNLLDYQIGFINQTPLSG  540
              + +YWGMV AH G+A T+ GIA S  Y+V+ DVRM +G  V + DY++ F +   ++G
Sbjct  479  KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITG  538

Query  541  PNYKGTRAEFSIQYQNKTRQIF-PEKRVYTIGQMPMTESAIDVTPFRDIYIALGEPLSED  599
            PNY+G  A +++  +     ++ +EKR+Y  ++M MTE+AID    RD+Y ALGE L ++
Sbjct  539  PNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG  598

Query  600  AWSVRIYYKPLVRWIWAGGFMILAGGVLALTDRRYYRKRQVT  641
            AW+VR+YYKP+VRWIWAGG+++  GG+L L+D RY R++ + 
Sbjct  599  AWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLP  640

439) ccmF in NC_009494


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  401 bits (1509),  Expect = 8e-113, Method: Compositional matrix adjust.
 Identities = 320/641 (50%), Positives = 455/641 (71%), Gaps = 3/641 (0%)

Query  1    MIAELGLFFLILALVASLMLALIPLAGLQFNRKDWIDSSRSYVVLQFLFVACAYLCLTAC  60
            M++E G  +L LAL  +L+L++ PL G+       + S+  +  L F+ VA A++ L   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FLMDDFsvnyvlnnsslllPWFYKFCAVWGGHEGSMLLWVAILSFWMILVCFFSSSLDTE  120
            F+++DF+V YV  NS+  LP  Y+  A WG+HEGS+LLWV ++S W + V  FS  + ++
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MRARVLVILGWLSIGFILFLLMTSNPFLRQFQVLNTQGRDLNPLLQDPGFLFHPPMLYMG  180
            + ARVL ++G +  GF+ F+L TS PF R +  +  +GRDLNPLLQDPG++FHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGfcvafafaiaalwaGKVETSWSKWTRPWTLAAWCCLTAGITLGSWWAYRELGWGGWW  240
            YVGF VAFAFAIAAL +G+++++ ++ +RPWTLAAW  LT GI LGS WAY ELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALLHSLAVTEQRQQFKAWTMllaiaafslsliGTFLVRSGVLT  300
            FWDPVENASFMPWL GTALLHS+AVTEQR  FKAWT+LL+I AFSL L+GTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFAVDPQRGLYILGFLLFVIGGSLTLFLFRAQTLQVNKHPGLLSRESALLLNNVFLV  360
            SVHAFA DP RG++IL+F+++V GGSL LF  R++ ++   + +L SRES LL NNV+L+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  VIMLTVLMGTVYPLLVEGLGLGKLSVGAPYFNAVFvplmipllllmglgvrlKWQNDCWR  420
              ML VL+GT+ PL+   LGLG +SVG P+FN++F  LM+P+ LL+G+G  ++W  D  R
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  DVFGKLNRifllslilpvillFCTSTEIHLTALLGLILAFWVLLSTANAAYHKVRDRGVT  480
            ++   L    + +L+L+V+L       I   + +G+ +A W+ + +   A ++V  RG T
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV-SRG-T  478

Query  481  GVGQAYWGMVLAHCGVAATVIGIAVSSAYGVQDDVRMSPGKQVNLLDYQIGFINQTPLNG  540
              + +YWGMV AH G+A T+ GIA S  Y+V+ DVRM +G  V + DY++ F +   + G
Sbjct  479  KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITG  538

Query  541  PNYKGTRAEFSIQYQNKSRQIF-PEKRVYTIGQMPMTESAIDVTPFRDIYIALGEPLSED  599
            PNY+G  A +++  +  +  ++ +EKR+Y  ++M MTE+AID    RD+Y ALGE L ++
Sbjct  539  PNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG  598

Query  600  AWSVRIYYKPLVRWIWAGGFMILAGGVLALTDRRYYRKRQV  640
            AW+VR+YYKP+VRWIWAGG+++  GG+L L+D RY R++ +
Sbjct  599  AWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPL  639

440) Rpic12D_2446 in NC_012856


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  400 bits (1505),  Expect = 1e-112, Method: Compositional matrix adjust.
 Identities = 330/624 (53%), Positives = 447/624 (72%), Gaps = 10/624 (1%)

Query  1    MIAELGHFALILALLTAAMQSVLPLVGAARDDERWMAVARPAARMQCALVLLAYGALTWA  60
            M++E GH  L LAL  A + SV PL G AR+D R MA A   A++    V  A+  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVSNDFSVLYVAANSNSALPLPYRVAAVWGGHEGSMLLWTTMLALWSLAVSLFSRQLPLP  120
            FV NDF+V YVA+NSN+ LP+ YRVAA WG+HEGS+LLW  +++ W+LAV++FSRQ+P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  VVARVLGVMGAISTGLLLFLLFASNPFLRLLPP-AMEGRDLNPLLQDPGMVSHPPMLYMG  179
            +VARVL+VMG + +G+L F+LF+S PF R LP+ ++EGRDLNPLLQDPG++ HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFAVAFSFAMAALLSGRLDATWARWSRPWTTAAWACLTTGIMLGSAWAYYELGWGGWW  239
            YVGF+VAF+FA+AALLSGRLD++ +R +RPWT AAW  LT GI+LGSAWAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASFMPWLAGTALIHSLAVTEKRGVFRAWTALLAIftfslsllgtflVRSGVLT  299
            FWDPVENASFMPWLAGTAL+HS+AVTE+R+ F+AWT LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFAVDPKRGLFILALLGIVTGGALGLFAWRAKRLSSNASEGATFPLFARESFllann  359
            SVHAFA DP RG+FILA++ +VTGG+L LFA R+ R+ S  +++    L +RES+LL+NN
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNA----LWSRESLLLGNN  356

Query  360  vllavaaatvllgtlypllldvlRLGKISVGPAYFEQVFVPLMSPAVLLMGAAPLARWRH  419
            VLL  A   VLLGTL PL+   L LG ISVG ++F+ +F  LM P  LL+G +PL RW +
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  420  GALPSMAVRLRWaavasvavglglavMYRTSalaglgltlaawcllsalaslaeklRQPG  479
            +  P    +L WAAV +  V   L        L +  ++++A  +  A       + ++ 
Sbjct  417  DR-PRNIRKLLWAAVVTTLVLSVLL----PWLLEDKIIAMTAVGMAMACWIAVLAVAEAV  471

Query  480  NRLTTLRQLPPSYFGMLVAHAGVGVFIAGVTLVLSQETLRELPVRVGGKVEVGGYMFHLT  539
            +R++   + + SY GM+ AH G++V I+G+++  +    R++ +R G+ V + +Y F + 
Sbjct  472  QRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFR  531

Query  540  SVAPAQGPNYDVLRGHVEVSRNGKPVATLLPERRLYHSQETPTTEVAIDSGITRDLYVAL  599
             V    GPNY    + + V+R+G P A L +E+RLY++     TE AID+G+TRDLY AL
Sbjct  532  EVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAAL  591

Query  600  GESLGQDNWAMRIYIKPFVSWIWS  623
            GE L+++ WA+R+Y KPFV WIW+
Sbjct  592  GEELDNGAWAVRLYYKPFVRWIWA  615

441) Rfer_0040 in NC_007908


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  399 bits (1501),  Expect = 3e-112, Method: Compositional matrix adjust.
 Identities = 336/645 (53%), Positives = 474/645 (74%), Gaps = 14/645 (2%)

Query  1    MIPEIGHFSLILALFVALALGTLSVVGGQQGRADWMAMARPGAQALWLL---TALSFGCL  57
            M+PE GH  L LAL VAL L+  ++ G  +G A    MA +G  A WLL    A +F  L
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDAR--MMASAGVFA-WLLFICVAGAFFVL  57

Query  58   TYAFFTNDFSVSYVAQHSNTKLPDIYRIAGVWGGHEGSlllwlmmlctwmmAVSLFSRQL  117
              AF  NDF+V+YVA +SNT+LP  YR+A+ WG+HEGSLLLW++++  W +AV++FSRQ+
Sbjct  58   VHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQV  117

Query  118  PEVMVSRvlgvlalvavgfllfMLITSNPFLR-LSDIPADGRDLNPLLQDPGLVFHPPML  176
            P  +V+RVL+V+++V  GFL F+L+TS PF R L+ +P +GRDLNPLLQDPGL+FHPP+L
Sbjct  118  PADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLL  177

Query  177  YMGYVGMSVPFAFAIAALLNGRLDAAWARWSRPWATAAWICLTIGIAMGSWWAYYELGWG  236
            YMGYVG SV+FAFAIAALL+GRLD+A +R +RPW+ AAW+ LT+GI +GS WAYYELGWG
Sbjct  178  YMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWG  237

Query  237  GWWFWDPVENASFLPWLVGTALIHSLAVTEKRGLFRNWTIILAITAFSLSLLGTFLVRSG  296
            GWWFWDPVENASF+PWL GTAL+HS+AVTE+R+ F+ WT++L+I AFSL LLGTFLVRSG
Sbjct  238  GWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSG  297

Query  297  VLTSVHAFATDPKRgvfillflsvvvggsltlfAMRASKVRAGGAFALVSRETFllvnnv  356
            VL SVHAFA+DP RG+FIL F+ +V GGSL LFA+R+ +VR+    AL SRE++LL NNV
Sbjct  298  VLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNV  357

Query  357  llttaaaavllgtlYPLIVDALNLGKLSVGPPYFNSVFAPIMLPVLFFMVLGSFARWKND  416
            LL +A   VLLGTL PL+   L LG +SVG P+FN++F+ +M+P  +++ +G++ RW  D
Sbjct  358  LLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRD  417

Query  417  SVAELTKKLRPVAILSVLLGCSAP-FLAGEWSPLVALSLTLVFWIVLASIQQIYRQLKDT  475
               ++ K L++  + +++L+   P +L +   ++ A+++++  WI + ++ +  +++   
Sbjct  418  RPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG  477

Query  476  VNWRSTPISFWGMHVAHIGIAVFVVGVTMVKAYENEKDVRMVVGDTVEVADYTFRLTGIR  535
             +   T++S+WGM  AH+G+AV + G++  + Y  E+DVRM  GD+V + DY F +  +R
Sbjct  478  TK---TSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  536  EVPGPNYTADQGDVEVLRGGKLLKTLHPEKRTYFSSTMPMTETAIDSNLLRDVYVSLGER  595
            ++ GPNY ++ + + V R G     LH+EKR Y +S M MTE+AID+ L RD+Y +LGE 
Sbjct  535  DITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  596  LEGGDKPAWAMRVYHKPFIVWIWLGSlmmalgggmaalDRRYRRK  640
            L+ G   AWA+R+Y KPF+ WIW G+L+MALGG +   D RYRR+
Sbjct  595  LDNG---AWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

442) Pden_3977 in NC_008687


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  399 bits (1501),  Expect = 3e-112, Method: Compositional matrix adjust.
 Identities = 289/595 (49%), Positives = 420/595 (71%), Gaps = 17/595 (2%)

Query  50   VGISFVALTMAFVTSDFSVALVYQNSHTAKPMIYKISGVWGNHEGSMLLWVLIVALFGAM  109
            V+ +F  L  AFV +DF+VA V  NS+T  P+ Y++++ WG HEGS+LLWVL+++     
Sbjct  50   VAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLA  109

Query  110  AAIFDANLPPKLRARVLAVQGSIGAAFLGFILFTSNPFLR-MASPPFDGRDLNPLLQDPG  168
             A+F  ++P+ + ARVLAV G + A+FL+FILFTS PF R +++ P +GRDLNPLLQDPG
Sbjct  110  VAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPG  169

Query  169  LAFHPPFLYLGYVGLSMAFSFAVAALIEGRVDAAWARWVRPWTLAAWVFLTIGIALGSWW  228
            L FHPP+LY+GYVG+S+AF+FA+AAL+ GR+D+A +R  RPWTLAAWVFLT+GI LGS W
Sbjct  170  LIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAW  229

Query  229  AYYELGWGGFWFWDPVENASFMPWLIAAALLHSAIVVEKREVLKSWTILLAIMAFGFSLI  288
            AYYELGWGG WFWDPVENASFMPWL ++ALLHS  V E+R  +K+WT+LL+I AF++ L+
Sbjct  230  AYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLL  289

Query  289  GTFIVRSGVITSVHSFASDPKRGVFILAILAFFVGGALLLYTFRAASMQARGAFTPVSRE  348
            GTF+VRSGV+ SVH+FASDP RG+FILA++ +  GG+LLL++ R+  +++R   +  SRE
Sbjct  290  GTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRE  349

Query  349  GALVLNNILLAVSTFVVFIGTVWPLVAEMLWDRRLSVGAPFFEQAFTPFMVALAIILPVG  408
            + L+ NN+LL  + +VV++GT+ PLV   L    +SVG PFF+  FT +MV++A++L VG
Sbjct  350  SLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVG  409

Query  409  AILPWKRGKLKRVLYPLRGALVFAGAVMALVFAVSTGHSalavigaglgawlvagavvdl  468
            +++ W R++ + +       L+ A+ V +LV++V        ++   + A    G  +  
Sbjct  410  PLVRWGRDRPRNI-----RKLLWAAVVTTLVLSVLLPW----LLEDKIIAMTAVGMAMAC  460

Query  469  WLR--TGNSGLSRLRRLPRAD---WGKAVAHAGLGVTFIGISLLMAWQVE-DIRVARIGE  522
            W+   +   ++ R+ R  ++    WG   AH GL+VT+ GI++     VE D+R+ R G+
Sbjct  461  WIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRM-RAGD  519

Query  523  TFTVAGYDITLESVEERPGPNYNSITAAMTVDRNGQQVALLHPEKRVYPVQSMPTTEAAI  582
            + T+ +Y +T+  V +  GPNY +  A + V R+G+  A+LH+EKR+Y    M  TEAAI
Sbjct  520  SVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAI  579

Query  583  QSGPFRDLYLVIGDEQQGGGWAVRVYIKPFASWIWLGSALMALGGFISLSDRRYR  637
            ++G  RDLY  +G+E + G+WAVR+Y KPF  WIW G+ LMALGG++ L+D RYR
Sbjct  580  DGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

443) PPS_3724 in NC_015733


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  398 bits (1499),  Expect = 4e-112, Method: Compositional matrix adjust.
 Identities = 302/538 (57%), Positives = 412/538 (77%), Gaps = 7/538 (1%)

Query  88   YKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQVMLARVLAVMGMISVGFLSFLII  147
            Y+ +A WGAHEGSLLLW L+++GWT+AV+VFSRQ+P  ++ARVLAVMGM+  GFL+F+++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  148  TSNPFQRLLPQVPTDGRDLNPLLQDFGLIVHPPMLYMGYVgfsvafafaiaallggrlDA  207
            TS PF R LP  P +GRDLNPLLQD GLI HPP+LYMGYVGFSVAFAFAIAALL+GRLD+
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  208  AWARWSRPWTIVAWAFLGVGITLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHS  267
            A +R +RPWT+ AW FL +GI LGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  268  LAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLTSVHAFAADPSRGIFILIFLLFV  327
            +AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL SVHAFA+DP+RG+FIL F+++V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  328  VGGSLTLFALRAPVVKSQVGFALWSRETlllannlvlvvaaSMILLGTLYPLVLDALTGA  387
             GGSL LFA+R+  V+S+V  ALWSRE+LLL+NN++L+ A  ++LLGTL PLV   L  +
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  388  KLSVGPPYFDalflplmallmvvlgvgvvvRWKDTPGKWLASMMTPVLLGSAILAPVAG-  446
             +SVG P+F+++F  LM  + ++LGVG +VRW     + +  ++ + ++ + +L+ +   
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  447  FIVDDFDWPTLTAFALAAWVVLGGLRDILDKTRHkgllkglpglgRSYWGMQlahlglav  506
            ++ D +   T  + A+A W+ + ++ + +++  +            SYWGM  AHLGLAV
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTSL------SYWGMVAAHLGLAV  496

Query  507  calgvvlSSNNSAERDLRMAPGESVELGGYHFLFQGARHFEGPNFISDKGTVVVSRDGRE  566
               G+ +S N S ERD+RM +G+SV + +Y+F F+  R++ GPN+ ++ + + V+R+G  
Sbjct  497  TITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEP  556

Query  567  VTTLHPEKRLYTVQQSMMTEAGIDAGFTRDLYVALGEPLENGAWAVRVHIKPYVRWIW  624
             + LH+EKRLY   + +MTEA+ID+G+TRDLY ALGE L+NGAWAVR+  KP+VRWIW
Sbjct  557  EAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

444) ccmF in NC_006513


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  398 bits (1499),  Expect = 4e-112, Method: Compositional matrix adjust.
 Identities = 339/645 (53%), Positives = 471/645 (74%), Gaps = 13/645 (2%)

Query  1    MIPELGHFSLIlalvlalvqavvPMIGANRNRIALMAVGRPAAQGQFLAIAFAFGCLTWA  60
            M+PE GH  L LAL +AL+ +V P+ G  R    +MA +   A   F+ +A AF  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVTSDFSLQLAAVNSHTDTPLIYKITGVWGNHEGslllwalslslwTVAVTVFSRNLPDA  120
            FV +DF++   A NS+T+ P+ Y++++ WG HEGSLLLW L +S WT+AV+VFSR++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  FMARVLGVLGWISAGFLSFTLVTSNPFDRLLPAVA-QGRDLNPLLQDAGMIIHPPLLYMG  179
            ++ARVL+V+G + AGFL+F L TS PF R LPA + +GRDLNPLLQD+G+I+HPPLLYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVAFAFAIAALLSGRMDAAWARWSRPWTTVAWVFLTAGIAVGSGWAYYELGWGGWW  239
            YVGFSVAFAFAIAALLSGR+D+A +R +RPWT  AWVFLT GI +GS+WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASFMPWLLGTALIHSLAVTEKRGAFRSWTillaisafslsllGTFLVRSGVIT  299
            FWDPVENASFMPWL GTAL+HS+AVTE+R++F++WT+LL+I AFSL LLGTFLVRSGV+ 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFATDPRRGLFILALLVVVIGVSLTLFAWRAPKLAGGGSFGLVSRDATLLGNNVLLA  359
            SVHAFA+DP RG+FILA++V+V G SL LFA R+ ++ +  + +L SR++ LLGNNVLL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  VATGSVLLGTLYPLFLDALNLGKISVGPPYFEAvfvplmtpvvvlmvlGPFVRWKGDGLG  419
             A   VLLGTL PL    L LG ISVG P+F+++F  LM P  +L+ +GP+VRW G +  
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRW-GRDRP  419

Query  420  RVLRPLL-PVMVASIAIGLGVA-FAVGHVTVRTVLGLVLASWVLLGSARLLASRFAERRG  477
            R +R LL + +V+++ +++ ++ +  + +   T +G+ +A W+    A L  +   +R +
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI----AVLAVAEAVQRVS  475

Query  478  ASTAAVLRGIPLAWWGMWLahagigifiigatmagSLNERLDVKMQPGQTAQLAGYTFTF  537
             +T +     +L+ WGM  AH G+++ I G + + + +   DV+M++G++  + +Y FTF
Sbjct  476  RGTKT-----SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTF  530

Query  538  RGVADAPGPNYDAARATIDVTRSGIPVATLHPEKRFYVAQQMPMTEASIDIGPFRDVYVN  597
            R V D  GPNY ++ A I+VTR G P A LH+EKR+Y + +M MTEA+ID G  RD+Y  
Sbjct  531  REVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAA  590

Query  598  LGDRLDDGSWVVGLFYKPFISWVWLGCVLMAIGGVFAASDRRYRR  642
            LG+ LD+G+W V L+YKPF+ W+W G +LMA+GG++  +D RYRR
Sbjct  591  LGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRR  635

445) B479_18470 in NC_019905


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  398 bits (1498),  Expect = 5e-112, Method: Compositional matrix adjust.
 Identities = 302/538 (57%), Positives = 412/538 (77%), Gaps = 7/538 (1%)

Query  83   YKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQVMLARVLAVMGMISVGFLSFLII  142
            Y+ +A WGAHEGSLLLW L+++GWT+AV+VFSRQ+P  ++ARVLAVMGM+  GFL+F+++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  143  TSNPFQRLLPQVPTDGRDLNPLLQDFGLIVHPPMLYMGYVgfsvafafaiaallggrlDA  202
            TS PF R LP  P +GRDLNPLLQD GLI HPP+LYMGYVGFSVAFAFAIAALL+GRLD+
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  203  AWARWSRPWTIVAWAFLGVGITLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHS  262
            A +R +RPWT+ AW FL +GI LGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  263  LAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLTSVHAFAADPSRGIFILIFLLFV  322
            +AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL SVHAFA+DP+RG+FIL F+++V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  323  VGGSLTLFALRAPVVKSQVGFALWSRETlllannlvlvvaaSMILLGTLYPLVLDALTGA  382
             GGSL LFA+R+  V+S+V  ALWSRE+LLL+NN++L+ A  ++LLGTL PLV   L  +
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  383  KLSVGPPYFDalflplmallmvvlgvgvvvRWKDTPGKWLASMMTPVLLGSAILAPVAG-  441
             +SVG P+F+++F  LM  + ++LGVG +VRW     + +  ++ + ++ + +L+ +   
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  442  FIVDDFDWPTLTAFALAAWVVLGGLRDILDKTRHkgllkglpglgRSYWGMQlahlglav  501
            ++ D +   T  + A+A W+ + ++ + +++  +            SYWGM  AHLGLAV
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTSL------SYWGMVAAHLGLAV  496

Query  502  calgvvlSSNNSAERDLRMAPGESVELGGYHFLFQGARHFEGPNFISDKGTVVVSRDGRE  561
               G+ +S N S ERD+RM +G+SV + +Y+F F+  R++ GPN+ ++ + + V+R+G  
Sbjct  497  TITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEP  556

Query  562  VTTLHPEKRLYTVQQSMMTEAGIDAGFTRDLYVALGEPLENGAWAVRVHIKPYVRWIW  619
             + LH+EKRLY   + +MTEA+ID+G+TRDLY ALGE L+NGAWAVR+  KP+VRWIW
Sbjct  557  EAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

446) ccmF in NC_002977


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  398 bits (1499),  Expect = 5e-112, Method: Compositional matrix adjust.
 Identities = 349/656 (54%), Positives = 472/656 (72%), Gaps = 25/656 (3%)

Query  1    MIAELGHialimallmallQGAFPLMGASQGVDIWMSVAKPAGRAQFLFLLVSFGALTAC  60
            M++E GH  L +AL +ALL + +PL G ++G    M+ A   ++  F+ +  +F  L   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVNNDFSVEYVARNSNSALPLYYRIAAVWGSHEGSMLLWATILGLWTAAVTVFSRSLSED  120
            FV NDF+V YVA NSN+ LP+ YR+AA WG+HEGS+LLW  +++ WT AV+VFSR ++ D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  FLARVLGIMGLVSVGILLFILFTSNPFER-LTPVPPDGNDLNPLLQDFGMTVHPPMLYMG  179
            ++ARVL++MG+V  G+L FILFTS PF R L + P +G DLNPLLQD G+  HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVglsvafafaiaallggslDSAWARWSRPWTLVAWLFLTGGITLGSWWAYYELGWGGWW  239
            YVG+SVAFAFAIAALL+G LDSA +R +RPWTL AW+FLT GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASFMPWLVATALIHSLAVTEKRGAFKAWTVllaifafslsllGTFLVRSGVLT  299
            FWDPVENASFMPWL +TAL+HS+AVTE+R++FKAWT+LL+I AFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFASDPTRGLFILILLAIVVGGSLLVYTVKAPAVRDVARYSLVSKEnllllnnillV  359
            SVHAFASDP+RG+FIL ++ +V GGSLL+++V++  VR     +L S+E+LLL NN+LL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  TASGSILLGTLYPLILDALKLGKISVGPPYFGTVFAPLMAPIFLLAGIGPMFAW-RESPI  418
            +A   +LLGTL PL+   L LG ISVG P+F T+F+ LM P+ LL G+GP+  W R+ P 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRP-  419

Query  419  GRILHRVRYLFPasfaagialaalaW--DETDFKMMA---GLGCAFWLAASACLSLWSRI  473
             R ++++  L +A  ++ +    L+W  ++  + M A   +++C  W+A  A     +  
Sbjct  420  -RNIRKL--LWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMAC--WIAVLAVAE--AVQ  472

Query  474  RLRDGWLEGLRAQSPSVY-GMTaahlgvavflvgavlSDRLSQEKLVRMAPGDSVMLAGY  532
            R+  G      ++++  Y GM AAHLG+AV + G  +S+  S E+ VRM +GDSV + +Y
Sbjct  473  RVSRG------TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  533  AFHFLGTETVQGPNFSAQQATFRVERDGESLE-LRPQKRNYKVQRNMMTEAAIDPGLSRD  591
             F F     + GPN+ +  A + V R+GE+   L+++KR Y+  R +MTEAAID GL+RD
Sbjct  527  RFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  592  LYVALGEPLDGNAWSVRLYVKPFIRWIWAGGLFMIAGGILSVSDRRY--RLPLPET  645
            LY ALGE LD  AW+VRLY KPF+RWIWAGGL+M  GG+L ++D RY  R PLPE+
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEA  642

447) Tmz1t_3999 in NC_011662


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  398 bits (1496),  Expect = 7e-112, Method: Compositional matrix adjust.
 Identities = 305/603 (51%), Positives = 434/603 (72%), Gaps = 21/603 (3%)

Query  27   GAQRNSSALMAVGRPAAQGQFFFILF-----SYFCLTWAFIQSDFSVQLAATNSHSATPL  81
            G  R  + +MA     + G F  +LF     ++F L  AF+ +DF+V   A NS++  P+
Sbjct  27   GVARGDARMMA-----SAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   MYKITGVWGNHEGslllwamslslwTVAVTVFSRHLPDAFLARVLGVLGLVSAGFISFTL  141
             Y++++ WG HEGSLLLW + +S WT+AV+VFSR++P  ++ARVL+V+G+V AGF++F L
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  VTSNPFDRLLPAVA-EGRDLNPLLQDPGMIIHPPLLYMGYVGFSVAFAFAIAALLSGRMD  200
             TS PF R LPA + EGRDLNPLLQDPG+I+HPPLLYMGYVGFSVAFAFAIAALLSGR+D
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  201  AAWARWSRPWTTIAWVFLTAGIAVGSGWAYYELGWGGWWFWDPVENASFMPWLLGTALMH  260
            +A +R +RPWT  AWVFLT GI +GS+WAYYELGWGGWWFWDPVENASFMPWL GTAL+H
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  261  SLAVTEKRGAFRSWTVLLAIGAFSLSLLGTFLVRSGVITSVHAFATDPRRGLYILALLVI  320
            S+AVTE+R++F++WT+LL+I AFSL LLGTFLVRSGV+ SVHAFA+DP RG++ILA++V+
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  321  VIGFSLLLYAMRANKLMGGGSFGLVSREtallannvlltvasasvllGTLYPLFLDALGL  380
            V G SLLL+A+R++++ +  + +L SRE+ LL+NNVLL  A   VLLGTL PL    LGL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  381  GKISVGPPYFEAvfvplmtpvvvlmvfGPFLRWKDDELLAEVRRVA-PAFVASVAIGVGS  439
            G ISVG P+F+++F  LM P  +L+  GP++RW  D    ++R++  +A V+++ ++V  
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR-PRNIRKLLWAAVVTTLVLSVLL  440

Query  440  AWAVDHLTWRTalglslaawvvlaslqllvRRLGERAGASAGSRLRSITASWWGMWLAHF  499
            +W +++   +     +++  +      L V    +R + ++ + L     S WGM  AH+
Sbjct  441  PWLLED---KIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTSL-----SYWGMVAAHL  492

Query  500  GIGIFIIGVTMVGSLDRHLDVKMKEGQHAELAGYTFVFRGAVDADGPNYDAARGRIELLR  559
            G+++ I G++   +   + DV+M+ G+   + +Y F FR   D  GPNY ++ + I + R
Sbjct  493  GLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTR  552

Query  560  DGRSLDMLTPEKRVYLAQGMPMTEASLDIGVFRDVYVSLGEQLEDGAWIVSLYYKPFISW  619
            +G +  +L +EKR+Y +  M MTEA++D G+ RD+Y +LGE+L++GAW V LYYKPF+ W
Sbjct  553  HGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRW  612

Query  620  IWA  622
            IWA
Sbjct  613  IWA  615

448) Thimo_1353 in NC_019940


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  397 bits (1494),  Expect = 1e-111, Method: Compositional matrix adjust.
 Identities = 325/602 (54%), Positives = 439/602 (73%), Gaps = 16/602 (2%)

Query  47   LLFLAIA--FACLVQVFLTDDFSVIYAASNSNSLLPKVYKVSAVWGAHEGSLLLWAFFLG  104
            LLF+ +A  F  LV+ F+ +DF+V Y A+NSN+ LP  Y+V+A WGAHEGSLLLW ++++
Sbjct  45   LLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMS  104

Query  105  VWAAAVAAFSKTLPLAMVARTLAVLGMISIGFLLFMLLTSNPFERIYPV-PPDGRDLNPL  163
             W+ AVA FS+ +P  +VAR LAV+GM+  GFL F+L+TS PF R  P  P +GRDLNPL
Sbjct  105  GWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPL  164

Query  164  LQDPGLAIHPPMLYMGYVGFSVafalaiaaliggkldaaWARWSRPWTTVAWIFLTIGIV  223
            LQDPGL +HPP+LYMGYVGFSVAFA+AIAAL++G+LD+A +R +RPWT  AW+FLT+GIV
Sbjct  165  LQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIV  224

Query  224  LGSWWAYYELGWGGWWFWDPVENASLMPWIVGTALLHSLAVTEKRGAFKSWTVllalsaf  283
            LGS WAYYELGWGGWWFWDPVENAS+MPW+ GTALLHS+AVTE+R++FK+WT+LL++ AF
Sbjct  225  LGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAF  284

Query  284  slsllGTFLVRSGVLTSVHAFATDPTRGVFILAFLGVVIGGSLTLYAWRAPTVSGGGRFA  343
            SL LLGTFLVRSGVL SVHAFA+DP+RG+FILAF+ +V GGSL L+A R+  V +    A
Sbjct  285  SLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNA  344

Query  344  LVSRESFllannlllvlltmlvllgtlaplIYEAMSWGKISVGFPWFNKMFL-GVTPFIA  402
            L SRES+LL+NN+LL+   ++VLLGTL PL+   ++ G ISVG P FN MF   + PF A
Sbjct  345  LWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPF-A  403

Query  403  ATLGVGVLARWKQDDPMrlarqlalaaalsvavllvsFWPPFSHGELWVPVGLALAAWVF  462
              LGVG L RW +D P  + + L  A   ++ + ++  W          +VG+A+A W+ 
Sbjct  404  LLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIA  463

Query  463  LSHLTSLYERLRHKTRLGGTLLSDLTGHSLSYYGMLIAHLGVAVFIVGLTMLSNFAVEKD  522
            +  ++   +R+ + T+            SLSY GM+ AHLG+AV I G++   N++VE+D
Sbjct  464  VLAVAEAVQRVSRGTK-----------TSLSYWGMVAAHLGLAVTITGIAFSQNYSVERD  512

Query  523  LRMAPGDRTEVAGLQFQFEGTRAVAGPNYDAQRGRVLVFDGDRQVALLVPEKRTYVASTQ  582
            +RM +GD   + + +F F   R ++GPNY +  + + V   +   A+L +EKR Y +S  
Sbjct  513  VRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRM  572

Query  583  TMTEASIDAGLLRDIYVSLGEPLEVGAWSLRIYYKPYVRWIWLGGLLMATGGVLAITDRR  642
             MTEA+ID+GL RD+Y +LGE L+ GAW++R+YYKP+VRWIW GGLLMA GG+L ++D R
Sbjct  573  VMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPR  632

Query  643  YR  644
            YR
Sbjct  633  YR  634

449) ccmF in NC_021289


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  394 bits (1481),  Expect = 1e-110, Method: Compositional matrix adjust.
 Identities = 310/570 (55%), Positives = 423/570 (75%), Gaps = 4/570 (0%)

Query  47   FVFVAIAFGCLTASFLGDDFSVIYVVGNSNSALPAIYRATAVWGGHEGSlllwvlfltlW  106
            F+ VA AF  L  +F+ +DF+V YV GNSN+ LP  YR +A WG+HEGSLLLWVL+++ W
Sbjct  47   FICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGW  106

Query  107  MSAVALTGRLLPPRFAARVLGVMSWIDAGFLLFMLLTSNPFARIMPP-AMNGRDLNPLLQ  165
              AVA+ +R +P+ + ARVL+VM+ + AGFL F+L+TS PFAR +P+ +++GRDLNPLLQ
Sbjct  107  TLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQ  166

Query  166  DPGMVIHPPLLYMGYVGFSVAFAFAIAALLDGKLDAAWARASRPWTIAAWTFLTLGIMLG  225
            DPG+++HPPLLYMGYVGFSVAFAFAIAALL G+LD+A +R +RPWT+AAW FLTLGI+LG
Sbjct  167  DPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLG  226

Query  226  SAWAYYELGWGGWWFWDPVENASFMPWLVGTALIHSLAATAKRGAFRAWSALLAICAFSL  285
            SAWAYYELGWGGWWFWDPVENASFMPWL GTAL+HS+A T +R++F+AW+ LL+ICAFSL
Sbjct  227  SAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSL  286

Query  286  SLLGTFLVRSGVVTSVHGFASDPARGVfilallaifagggfalfaWRAPRAASTVGFETV  345
             LLGTFLVRSGV+ SVH+FASDPARG+FILA++ + +GG++ LFA R+ R  S V     
Sbjct  287  CLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALW  346

Query  346  SREslllsnnllmlvaaasvmlGTLYPMVLDALGLDKISVGAPYFDSVFVPLMTPAVFLM  405
            SRESLLL+NN+L++ A   V+LGTL P+V   LGL+ ISVG P+F+++F  LM P  +L+
Sbjct  347  SRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLL  406

Query  406  GVGPLARWKaarlpalavrlrwaalvsvatalvalvmvGSR--PLVGLGFVLAAWTFATI  463
            GVGPL RW   R   +   L+ A + ++  +++   ++  +  ++ ++G  +A W     
Sbjct  407  GVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLA  466

Query  464  ATGMAERFGQGARRVRLATVGMWLAHAGVGVFIVGVTMVKGFPVEHDARLMAGGAVDAGG  523
             +   +R ++G+ +  L+  GM  AH G++V I G++  + ++VE+D R+ AG++V   +
Sbjct  467  VAEAVQRVSRGT-KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHD  525

Query  524  YRFRLDRVEAIDGPNYRATRATITVTRDGRLIATLHPEKREFLVSNMPTTEAAIDQGVLR  583
            YRF +  V  I GPNYR+  A I VTR+G   A LH+EKR +  S M  TEAAID G+ R
Sbjct  526  YRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTR  585

Query  584  DLYVALDQPAGGGAWGVRIQIKPFVRWIWG  613
            DLY AL++  + GAW+VR+  KPFVRWIW+
Sbjct  586  DLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

450) ccmF in NC_009659


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  394 bits (1483),  Expect = 9e-111, Method: Compositional matrix adjust.
 Identities = 320/621 (52%), Positives = 451/621 (73%), Gaps = 9/621 (1%)

Query  30   RGDRHWMGLAKPAAWGQLTFLLFSFACLSNAFLTDDFSVAYVAHNSNSMLPWYYKFSAIW  89
            RGD + M+ A   AW  +  +  +F  L +AF+ +DF+VAYVA NSN+ LP  Y+ +A W
Sbjct  30   RGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATW  89

Query  90   AAHEGSLLLWVLILAGWTSAVSFGAKQLPEAMLARVLAVMGMISTGFLLFLISTSNPFVR  149
            +AHEGSLLLWVL+++GWT AV+  ++Q+P  ++ARVLAVMGM+ +GFL F++ TS PF R
Sbjct  90   GAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFAR  149

Query  150  LLSNIPADGRDLNPLLQDIGLIVHPPILYMGYVGFSVAFAFAIAALLDGKVDAAWARWSR  209
             L+ +P +GRDLNPLLQD GLI HPP+LYMGYVGFSVAFAFAIAALL G++D+A +R +R
Sbjct  150  TLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFAR  209

Query  210  PWTTVAWAFLGLGIALGSWWAYSELGWGSWWFWDPVENASFMPWLVGAALIHSLAATEKR  269
            PWT  AW FL LGI LGS WAY ELGWG+WWFWDPVENASFMPWL G+AL+HS+A TE+R
Sbjct  210  PWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQR  269

Query  270  GVFKSWTVllaisafslsllGTFLVRSGVLTSVHAFATDPARgvfvlvlllavvggslal  329
            + FK+WT+LL+I AFSL LLGTFLVRSGVL SVHAFA+DPARG+F+L +++ V GGSL L
Sbjct  270  AGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLL  329

Query  330  falRAPVIKSQVSFGILSRETlllvnnlllsvaaaMILLGTLYPMILDAFTGAKLSVGPP  389
            FA+R+  ++S+V+ ++ SRE+LLL NN+LL  A  ++LLGTL P++   +  + +SVG P
Sbjct  330  FAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEP  389

Query  390  YFNAMFVPLMALLMVAVAVGMLTRWKDTSGRWLARML-VPVLAVSLLIALGAATLHDRSR  448
            +FN+MF  LM  + + ++VG L RW     R + ++L  +V++  +L  L +  L+D+  
Sbjct  390  FFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKII  449

Query  449  WAVMGVCL-LAAWVVLTGLRDIFDKTRHMGLFKGLSMLGNSYWGMHLAHLGFAVCALGAV  507
             A+ +V + +A W+ + ++ +  ++  +       +  + SYWGM  AHLG+AV   G  
Sbjct  450  -AMTAVGMAMACWIAVLAVAEAVQRVSRG------TKTSLSYWGMVAAHLGLAVTITGIA  502

Query  508  LTTVGSLERNLRMMPGTAIELGGYHFIFEGTTRLQGPNYVADYGNVRVLRDGTEIALLHP  567
            ++   S+ER++RM +G ++ + +Y+F F     + GPNY ++ + + V R+G   A+LH+
Sbjct  503  FSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHA  562

Query  568  EKRVYHVQQTSMTEAGIQAGFTRDLFVALGEPLTDGAWAVRVQIKPFVRWIWlgallmtl  627
            EKR+Y+  +  MTEA+I++G+TRDL+ ALGE L +GAWAVR+  KPFVRWIW G+LLM+L
Sbjct  563  EKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMAL  622

Query  628  ggllaatDWRYRRGSRLAPDT  648
            GGLL  +D RYRR   L+   
Sbjct  623  GGLLCLADPRYRRRKPLPEAG  643

451) ccmF in NC_016626


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  393 bits (1480),  Expect = 1e-110, Method: Compositional matrix adjust.
 Identities = 311/553 (57%), Positives = 416/553 (76%), Gaps = 9/553 (1%)

Query  64   DDFSVVYVVGNSNSALPAIYRFTAVWGGHEGSlllwvllltlwMIAVAGFGRRLPLPFAA  123
            +DF+V YV GNSN+ LP  YR +A WG+HEGSLLLWVLL++ W +AVA F+R++P  + A
Sbjct  64   NDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVA  123

Query  124  RVLGVMSWINAGFLLFMLLTSNPFTRIMPP-AMNGRDLNPLLQDPGMVIHPPLLYMGYVG  182
            RVL+VM+ + AGFL F+L+TS PF+R +P+ +++GRDLNPLLQDPG+++HPPLLYMGYVG
Sbjct  124  RVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVG  183

Query  183  FSVAFAFAIAALLEGRLDAAWARASRAWTLAAWMFLTLGIMLGSAWAYYELGWGGWWFWD  242
            FSVAFAFAIAALL GRLD+A +R +R+WTLAAW+FLTLGI+LGSAWAYYELGWGGWWFWD
Sbjct  184  FSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWD  243

Query  243  PVENASFMPWLVGTALIHSLAATAKRGAFRAWSALLAICAFSLSLLGTFLVRSGVVTSVH  302
            PVENASFMPWL GTAL+HS+A T +R++F+AW+ LL+ICAFSL LLGTFLVRSGV+ SVH
Sbjct  244  PVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVH  303

Query  303  GFASDPTRGVfilallalfsggglalfaWRAPRAASAVGFEPVSREalllsnnllmlvaa  362
            +FASDP+RG+FILA++ L +GG+L LFA R+ R  S V     SRE+LLL+NN+L++ A 
Sbjct  304  AFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAM  363

Query  363  asvmlGTLYPMALDALDLDKISVGAPYFDSVFVPLMTPAIFLMGVGPLARWKAARLPEIA  422
              V+LGTL P+    L+L+ ISVG P+F+++F  LM P  +L+GVGPL RW   R  +I 
Sbjct  364  LVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIR  423

Query  423  VRLRWAALAS--VASAFLP----GVSRPLVSLGFLLAAWTFATIATSVFErvvrarqrvr  476
             +L WAA+ +  V S +LP    +   ++ ++G  +A W  A +A +   + V    +  
Sbjct  424  -KLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI-AVLAVAEAVQRVSRGTKTS  481

Query  477  LATLGMWLAHAGVGVFIVGVTMVKGFPVERDARLVPGGSVDAGGYRFRLDDVRAIDGPNY  536
            L+  GM  AH G++V I G++  + ++VERD R+ +G+SV   +YRF + +VR I GPNY
Sbjct  482  LSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNY  541

Query  537  RATRATITVTRDGRAIATLNPEKREFLVSNMPTTEAAIDRGVLRDLYVALDQPAGANAWT  596
            R+  A I VTR+G + A L++EKR +  S M  TEAAID G+ RDLY AL++  +  AW+
Sbjct  542  RGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWA  601

Query  597  VRIQIKPFVRWIW  609
            VR+  KPFVRWIW
Sbjct  602  VRLYYKPFVRWIW  614

452) Alvin_2179 in NC_013851


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  392 bits (1474),  Expect = 4e-110, Method: Compositional matrix adjust.
 Identities = 327/616 (54%), Positives = 440/616 (72%), Gaps = 16/616 (2%)

Query  36   MAMARPLAWGQLTFIGIAFLCLLIAFLDDDFSVLYVASNSNTLMPTLYKISAIWGAHEGS  95
            MA A  +AW  +  ++ AF+ L+ AF+ +DF+V YVA+NSNT +P  Y+++A WGAHEGS
Sbjct  36   MASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGS  95

Query  96   LLLWILMLAGWGAAVAQFSRNLPLPMIARVISVQAMIAIGFMLFTLLTSNPFDRIFPA-P  154
            LLLW+L+++GW  AVA FSR++P  ++ARV++V +M+  GF+ F L+TS PF R +PA P
Sbjct  96   LLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFP  155

Query  155  LEGRDLNPLLQDPGLAIHPPMLYMGYVGFSVafafaiaaliggklDAAWARWSRPWTTVA  214
            +EGRDLNPLLQDPGL +HPP+LYMGYVGFSVAFAFAIAAL++G+LD+A +R +RPWT  A
Sbjct  156  VEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAA  215

Query  215  WVFLTIGIALGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALMHSLAVTEKRAAFKNW  274
            WVFLT+GI LGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS+AVTE+RA+FK W
Sbjct  216  WVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAW  275

Query  275  TVLLAIstfslsllgtflVRSGVLTSVHAFATDPTRGSFILLFLCVVIGGSLALYAWRAP  334
            T+LL+I +FSL LLGTFLVRSGVL SVHAFA+DP+RG FIL F+ +V GGSL L+A R+ 
Sbjct  276  TLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGH  335

Query  335  TISGGGRFDLLSREtfllinnlllttlavlvlfgtlaPLIYEAAGWGKISVGFPWFNKMF  394
             + +     L SRE++LL NN+LL +  ++VL+GTL PL+    G G ISVG P FN MF
Sbjct  336  RVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMF  395

Query  395  VALSPLLILATAIGPHVHWKHDEAWRLVRalwialalgiaavlTVSLPGMSADQMA--TG  452
              L   + L  ++GP V+W +D ++ + +   +  A+  + VL+V LP +  D++   T+
Sbjct  396  TWLMVPFALLLGVGPLVRWGRDRPRNIRK--LLWAAVVTTLVLSVLLPWLLEDKIIAMTA  453

Query  453  FGVGMAVWLAASHLVSLFDRLKHKGGLRGLKADLTGNSRGYYGMWLAHMGLAVFIVGVTM  512
             G++MA W+A   +    +R+      RG K+ L+     Y GM  AH+GLAV I G++ 
Sbjct  454  VGMAMACWIAVLAVAEAVQRVS-----RGTKTSLS-----YWGMVAAHLGLAVTITGIAF  503

Query  513  VSIHGEETDVRMSPGASHEASGYRFQFNGVTAIPGPNYQAFRGDFVVYRGEREIARLYPE  572
                + E DVRM +G S    +YRF F  V  I GPNY++  + + V R     A L +E
Sbjct  504  SQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAE  563

Query  573  KRKYVSGGMPMTEAAIDAGFLRDIYISLGEPVGVQGDWALRLYHKPYVRWIWLGCILMAI  632
            KR Y ++ M MTEAAID+G+ RD+Y +LGE ++ +G WA+RLY KP+VRWIW G +LMA+
Sbjct  564  KRLYNTSRMVMTEAAIDGGLTRDLYAALGEELD-NGAWAVRLYYKPFVRWIWAGGLLMAL  622

Query  633  GGTLAATDRRYRTVRQ  648
            GG L  +D RYR  + 
Sbjct  623  GGLLCLADPRYRRRKP  638

453) PSJM300_06020 in NC_018177


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  390 bits (1467),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 343/620 (56%), Positives = 460/620 (75%), Gaps = 7/620 (1%)

Query  1    MIPELGHLAMILALCLAVVQGTLPLVGAWRGDRVWMGLAQPAAWGQFSFLAFSFFCLTYA  60
            M+PE GH  + LAL +A++ +  PL G  RGD   M+ A   AW  F  +A +FF L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FMTDDFSVAYVAQNSNSALPWYYKFSAVWGAHEGSLLLWAFILAGWTFAVAIFSRQLPED  120
            F+ +DF+VAYVA NSN+ LP  Y+ +A WGAHEGSLLLW ++++GWT+AVA+FSRQ+P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MLARVLGVMglisigfllfliVTSNPFERLLPQSPMDGRDLNPLLQDFGLVVHPPMLYMG  180
            ++ARVL+VMG++  GFL F++ TS PF R LP  P++GRDLNPLLQD GL+ HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVgfsvafafaiaallggrlDAAWARWSRPWTLIAWAFLGTGIALGSWWAYYELGWGGWW  240
            YVGFSVAFAFAIAALL+GRLD+A +R +RPWTL AW FL  GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLT  300
            FWDPVENASFMPWL GTAL+HS+AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFATDPARgvfilvflllvvggsltlfALRAPVVKSQVGFGLWSRETlllvnnlllv  360
            SVHAFA+DPARG+FIL F++LV GGSL LFA+R+  V+S+V  +LWSRE+LLL NN+LL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  vATAMILLGTLYPLLLDALSGAKLSVGPPYFNAMFLPLIgvlmltlgvgvlvRWKDTPLQ  420
             A  ++LLGTL PL+   L+ + +SVG P+FN+MF  L+  + L LGVG LVRW     +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  WLLGMLTPvlivgailgglgSMVFGDFHWAVLAVCL-LSAWVVIAGVRDVLDKTRHKGLL  479
             +  +L + ++   +L+ L + ++ D   A+ AV + ++ W+ + +V + +++       
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  480  KGARSLTPSYWGMHLAHFGLVVCAMGVVLVSQQSDERDLRLAPGESLELGGYRFVFEGAQ  539
            +G+++ + SYWGM  AH+GL V   G+ +  + S ERD+R+ +G+S+ + +YRF F   +
Sbjct  476  RGTKT-SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  540  HFEGPNYTSDKGTIRVFDGDKRIATLHPEKRLYTVQQMPMTEAGIDPGFTRDLYVALGEP  599
            ++ GPNY ++ + I V   +   A LH+EKRLY   +M MTEA+ID G+TRDLY ALGE 
Sbjct  535  DITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  600  LENGAWAVRVHIKPFVRWIW  619
            L+NGAWAVR+  KPFVRWIW
Sbjct  595  LDNGAWAVRLYYKPFVRWIW  614

454) R2APBS1_2397 in NC_020541


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  390 bits (1467),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 320/590 (55%), Positives = 444/590 (76%), Gaps = 11/590 (1%)

Query  56   ILAWAFLRFDFSVQYVADNSNLALPWYYRIAAVWGAHEGSLLLWILILNVWTMALVTFSQ  115
            +L  AF+  DF+V YVA+NSN  LP  YR+AA WGAHEGSLLLW+L+++ WT+A+  FS+
Sbjct  56   VLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR  115

Query  116  KLPEVFASRVIAVMGLIAVGFLAFIIFTSNPFGRLLP-MPGDGADLNPVLQDPGMTMHPP  174
            ++P  + +RV+AVMG++  GFLAFI+FTS PF+R LP  P +G DLNP+LQDPG+  HPP
Sbjct  116  QVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPP  175

Query  175  MLYMGYVGFSVAFAFSIAALLGGELEQAWVRWARPWTNLAWAFLTCGIVAGSWWAYAELG  234
            +LYMGYVGFSVAFAF+IAALL+G L+ A  R ARPWT  AW FLT GIV GS WAY ELG
Sbjct  176  LLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELG  235

Query  235  WGGWWFWDPVENASFMPWLVGVALIHAQAVTEKRGSLRAWTillsifafslsllGTFLVR  294
            WGGWWFWDPVENASFMPWL G AL+H+ AVTE+R++++AWT+LLSI AFSL LLGTFLVR
Sbjct  236  WGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVR  295

Query  295  SGVLTSVHAFASDPRRGVFILAFLTIVVGGSLLLYALRAPKVLGGKPFQVVSRETALLIS  354
            SGVL SVHAFASDP RG+FILAF+ +V GGSLLL+A+R+ +V +     + SRE+ LL +
Sbjct  296  SGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGN  355

Query  355  NlmfavaaamvllGTLFPLIGDALNLGRISVGPPYFGflfpllmlpivlllpfGPFLRWG  414
            N+++  A  +VLLGTL+PL+   L LG ISVG P+F  +F  LM+P+ LLL  GP++RWG
Sbjct  356  NVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWG  415

Query  415  KGDMPVLKQLLLRagiaaaacaivaaFLVDGQ--PKAIAGVAALVWLTVGVLLYALKRWR  472
            ++    +++LL  A +++   +++ + L++++  + +  G+A   W++V  +  A++R  
Sbjct  416  RDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQR--  473

Query  473  EMPRGRRYPAEMAGMllahlgvgvfvagvllSESLSVTRDVRMAPGESQRIGSYDFRFDG  532
             ++RG + +    GM+ AHLG++V ++G+ +S++ SV RDVRM +G+S  I  Y F F  
Sbjct  474  -VSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  533  VHHTTGPNWTADQGTVTVIRNDKTLAVMHPQKRTYPRGQ-VQTESAVDAGVTRDLYVALG  591
            V++ TGPN  ++ + + V R++   AV+H++KR Y  ++ V TE+A+D+G+TRDLY ALG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  592  EPMDANDIEGAWALRLYYKPFVRWIWAggllmmlgglVCATDKRFRLKRS  641
            E +D    +GAWA+RLYYKPFVRWIWAGGLLM LGGL+C +D R+R +++
Sbjct  593  EELD----NGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKP  638

455) TVNIR_0268 in NC_019902


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  390 bits (1467),  Expect = 2e-109, Method: Compositional matrix adjust.
 Identities = 317/607 (53%), Positives = 444/607 (74%), Gaps = 20/607 (3%)

Query  24   PLIGAARGDVALMAVGRSAAFGQLFFVALA--YAALTWAFVTDDFSLRYVATHSNSLLPT  81
            PL G ARGD  +MA   ++ F+ L+F+ +A  +  L  AFV +DF++ YVA +SN+ LP 
Sbjct  24   PLWGVARGDARMMA--SAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   QYKISGVWGGHEGslllwvlilslwsAAVATFSRSLPREVLARVLGVMGLVAIGFIGFTL  141
             Y++++ WG+HEGSLLLWVL++S W+ AVA FSR +P +++ARVL+VMG+V  GF++F L
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  FTSSPFERLLPA-AMEGRDLNPMLQDPGLIFHPPMLYMGYVGFSVafafaiaaliggrlD  200
            FTS+PF R LPA ++EGRDLNP+LQDPGLIFHPP+LYMGYVGFSVAFAFAIAAL++GRLD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  201  AAWARWSRPWTAVAWAFLTLGIALGSWWAYYVLGWGGWWFWDPVENASFLPWLMGTALLH  260
            +A +R +RPWT  AW FLTLGI LGS WAYY LGWGGWWFWDPVENASF+PWL GTALLH
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  261  SLAVTEKRGGFKNWTVMLAILTFSLVLLGAFLVRSGVLTSVHAFAVDPDRGLYLLGFMAV  320
            S+AVTE+R+GFK WT++L+I +FSL LLG+FLVRSGVL SVHAFA DP RG+++L+FM +
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  321  VVAGSLTLFAWRAGKVGLGGSFGLVSREsalltnnvllavsaaavllgtlYPLFLDAFGL  380
            V +GSL LFA R+ +V    + +L SRES LL NNVLL  +   VLLGTL PL    +GL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  381  GKISVGPPYFEAVflplmlplllllgfgprlrWKQDSPTEQLWRLRW-ILGFSLVFGMLW  439
            G ISVG P+F+++F  LM+P+ LLLG GP +RW +D P + +++L W  +  +LV+++L 
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRN-IRKLLWAAVVTTLVLSVLL  440

Query  440  P-LAVGSWSLLAGMGTFLGLWIIGSALKDLVERLRRRPGSTQGFGTRVKRLGRSYAGMQI  498
            P L  +    ++++G  ++ WI   A+ + V+R+           +R  + + SY GM  
Sbjct  441  PWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV-----------SRGTKTSLSYWGMVA  489

Query  499  AHIGVALLVIGVTFVLGYDDERDVRMAVGETVEVGGYAFRLDALEHIDGPNYSAEQATVA  558
            AH+G+A+ + G++F   Y  ERDVRM  G++V + +Y F +  + +I GPNY +  A ++
Sbjct  490  AHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIG  549

Query  559  VYRDDGRRLATLRPQMRDYFSQDMPMAHTSLHRGLFRDLYVNMGEPLGGDAWVMRVYYKP  618
            V R++    A L+++ R Y +  M M++++++ GL RDLY  +GE L+ +AW +R+YYKP
Sbjct  550  VTRHGEPE-AVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKP  608

Query  619  YMNWIWT  625
            ++ WIW+
Sbjct  609  FVRWIWA  615

456) ccmF [H] in NC_019902


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  389 bits (1463),  Expect = 3e-109, Method: Compositional matrix adjust.
 Identities = 304/555 (55%), Positives = 404/555 (73%), Gaps = 12/555 (2%)

Query  64   HDFSVKNVAQNSFSQLPAVYRFTATWGSHEGSLLLWTVILAGWSAAVAAFSKQLPEEMVA  123
            +DF+V  VA NS +QLP  YR +ATWG+HEGSLLLW ++++GW+ AVA FS+Q+P ++VA
Sbjct  64   NDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVA  123

Query  124  RVLGVMGLISVGFLALLIFTSNPFERLFP-IPADGRDLNPLLQDVGMISHPPLLYMGYVG  182
            RVL+VMG++  GFLA+++FTS PF R +P +P +GRDLNPLLQD G+I HPPLLYMGYVG
Sbjct  124  RVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVG  183

Query  183  FSVafafaiaallaGKLDAAWARWSRPWTTTAWTFLTLGVALGSWWAYRELGWGGWWFWD  242
            FSVAFAFAIAALL+G+LD+A +R +RPWT +AW FLTLG+ LGS WAY ELGWGGWWFWD
Sbjct  184  FSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWD  243

Query  243  PTENASLMPWLAGTALIHALAATEKRGVFSNWSVLLAIATFSLSLLGTFLVRSGVLSSVH  302
            P ENAS+MPWLAGTAL+H++A TE+R+ F  W++LL+I +FSL LLGTFLVRSGVL SVH
Sbjct  244  PVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVH  303

Query  303  AFATDPARGLFILAFLGLVIGGSMALYALRAPRIVSGGSFHWFSRESlllannvflvaal  362
            AFA+DPARG+FILAF+ LV GGS+ L+A+R+ R+ S  +    SRESLLL+NNV+L+AA+
Sbjct  304  AFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAM  363

Query  363  gavllgtlYPLFLDALGLGKISVGPPYFNavfvplvapalflaglgplaRWKQADLPDLM  422
              VLLGTL PL    LGLG ISVG P+FN++F  L+ P  +L G+GPL RW + D P  +
Sbjct  364  LVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR-DRPRNI  422

Query  423  WRLKWAFGValataallp--ltlKGMNLQVTLGIFLALWILFTVAKGFALRLRSTRKGRL  480
            ++L WA  V+    ++L   L    +    ++G+ +A WI          R+    K  L
Sbjct  423  RKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTSL  482

Query  481  QQLAGMPRAFWGMQIAHaglallvvgvtvvSNYETERDVRMPIGSHVELAGYRFQFQGVE  540
                    ++WGM  AH GLA+ + G++   NY  ERDVRM  G  V + +YRF F+ V 
Sbjct  483  --------SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  541  ELPGPNYVAGRGTMEVTSPWGRNFVLYPEKRNYNASGMIMTQAAVNYGPFRDVYVSLGEP  600
            ++ GPNY +G + + VT     + VL +EKR YN+S M+MT+AA++ G  RD+Y +LGE 
Sbjct  535  DITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  601  LGDGVWTVRVYHKPF  615
            L++G W+VR+Y KPF
Sbjct  595  LDNGAWAVRLYYKPF  609

457) ccmF in NC_007974


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  388 bits (1461),  Expect = 5e-109, Method: Compositional matrix adjust.
 Identities = 334/599 (56%), Positives = 453/599 (76%), Gaps = 15/599 (2%)

Query  52   AAYLSLTYAFVDNDFSVLYVAANSNSALPLIYRMAAVWGGHEGsmllwslmlalwamaVA  111
            +A++ L  AFV NDF+V YVA+NSN+ LP+ YR+AA WG+HEGS+LLW L+++ W++AVA
Sbjct  52   GAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVA  111

Query  112  GFSRRLPLAFVARVLGVMGGISTGLLLFVLFASNPFLRLLPR-AMEGRDLNPLLQDPGMV  170
             FSR++P  +VARVL+VMG + +G+L F+LF+S PF R LP  ++EGRDLNPLLQDPG++
Sbjct  112  VFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLI  171

Query  171  FHPPFLYMGYvgfavafsfavaaLLEGRLDAAWARWSRPWTILAWMFLTIGIAMGSMWAY  230
            FHPP+LYMGYVGF+VAF+FA+AALL GRLD+A +R +RPWT+ AW+FLT+GI +GS WAY
Sbjct  172  FHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAY  231

Query  231  YELGWGGWWFWDPVENASFMPWLAGTALIHSLAVTEKRGAFRAWTALLAIftfslsllgt  290
            YELGWGGWWFWDPVENASFMPWLAGTAL+HS+AVTE+R++F+AWT LL+I +FSL LLGT
Sbjct  232  YELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGT  291

Query  291  flVRSGVLTSVHAFAVDPRRGIFIltllglvtglalalFAWRAPRLTQRTDFNLTSRESF  350
            FLVRSGVL SVHAFA DP RG+FIL+++ LVTG +L LFA R+ R+  R +  L SRES+
Sbjct  292  FLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESL  351

Query  351  llannvllavaasavllgtlypllldvldlgKVSVGPEYFEEVFVPLMAPAVLLMGAAPL  410
            LL+NNVLL  A   VLLGTL PL+   L+LG +SVG  +F+ +F  LM P  LL+G +PL
Sbjct  352  LLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPL  411

Query  411  ARWGRSDLPDMARRLRWAAVASVVIALGLLA-VLRNS-SAMTGLGLTLAAWCAMSGLASL  468
             RWGR D P   R+L WAAV + ++   LL+ +L +   AMT++G+++A W  ++ LA  
Sbjct  412  VRWGR-DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACW--IAVLAVA  468

Query  469  ATQMRHARDWRSGLRQLPAGYYGMLLAHIGVGVFITGVTLVKSQESVRELSMRVGDSVAV  528
             +  R +R+ +++L     +Y GM+ AH+G++V ITG+++ ++    R++ MR GDSV++
Sbjct  469  EAVQRVSRGTKTSL-----SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTI  523

Query  529  GGYDFRFDGVAPVRGPNYDALRGTVTVTRQGRPVTTLATERRVYRSQDMPTTEAAIDTGL  588
             +Y F F  V  + GPNY +  + + VTR+G P + L +E+R+Y +  M  TEAAID GL
Sbjct  524  HDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGL  583

Query  589  ARDLYVALGDSSDATSADARWALRVYVKPFVSWVWggcalmalggllaaSDRRYRARHP  647
            +RDLY ALG+  D    ++ WA+R+Y KPFV W+W+G  LMALGGLL  +D RYR R P
Sbjct  584  TRDLYAALGEELD----NGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKP  638

458) ccmF2 in NC_008314


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  388 bits (1461),  Expect = 5e-109, Method: Compositional matrix adjust.
 Identities = 318/582 (55%), Positives = 437/582 (76%), Gaps = 11/582 (1%)

Query  64   NDFSVRYVANHSNSSLPAIYRFAAAWGGHEGslllwslllaawsalvswRSDSLPLMFSS  123
            NDF+V YVA +SN+ LP  YR AA+WG+HEGSLLLW LL+++W+  V+  S  +P  + +
Sbjct  64   NDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVA  123

Query  124  RVLAVLGIVSSGFLCFMLFTSNPFERLWPA-PPDGGDLNPLLQDIGLVIHPPMLYIGYVG  182
            RVLAV+G+V +GFL F+LFTS PF R  PA P +G DLNPLLQD GL++HPP+LY+GYVG
Sbjct  124  RVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVG  183

Query  183  LAVPFAFSVASLLTGRIDSLWARWCRPWTIGAWLFLTLGIALGSAWAYYELGWGGWWFWD  242
            ++V+FAF++A+LL+GR+DS  +R  RPWT++AW+FLTLGI LGSAWAYYELGWGGWWFWD
Sbjct  184  FSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWD  243

Query  243  PVENASFMPWLLATALMHSLAVTEKRGIFAGWTlllaiaafglsllgaflVRSGVLTSVH  302
            PVENASFMPWL +TAL+HS+AVTE+R+ F +WTLLL+I AF+L LLG+FLVRSGVL SVH
Sbjct  244  PVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVH  303

Query  303  AFAADPGRGVFLLSLFAFIVGGALCLYAWRMGRVRSSSAFAPFSREGVLMLNNLFLAVAT  362
            AFA+DP+RG+F+L++  ++ GG+L L+A R  RVRS    A  SRE++L+ NN++L  A 
Sbjct  304  AFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAM  363

Query  363  ASVLLGTVYPLALDSLGLAKISVGAPYFEAvfvplvvpmlflmgvgPLMRWKHASLPDlk  422
              VLLGT+ PL    LGL+ ISVG P+F+++F  L+VP  +L+GVGPL+RW +    +++
Sbjct  364  LVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIR  423

Query  423  rrlkwalaaalaFGLVTPWLLGTSSIGIS-LGLALAGWITCALVATAAESVRDrrgagal  481
            + L  A+ ++L ++++ PWLL    I+++ +G+A+A WI+   VA A + V         
Sbjct  424  KLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSR-------  476

Query  482  rslaarPLSFHGMLIAHLGIAVCIVGVTMVGGYAGERTVSMSVGDSLEFRDYRFRFDSVE  541
               +  +LS+ GM+ AHLG+AV I G++    Y+ ER V M  GDS+ ++DYRF F  V 
Sbjct  477  --GTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  542  TLARDNYQARRASITVTRDGQLVTLLRPEKRFYPVQRKVMTEAAIDPGLTRDLYVSLGEA  601
             ++  NY++  A I VTR+G+  ++L++EKR+Y   R VMTEAAID GLTRDLY +LGE 
Sbjct  535  DITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  602  LPDGSWTLRLYHKPFISWIWSgcllmafggllalgDRRYRAR  643
            L +G+W++RLY KPF+ WIW+G LLMA+GGLL L+D RYR R
Sbjct  595  LDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

459) Rmag_0272 in NC_008610


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  387 bits (1457),  Expect = 1e-108, Method: Compositional matrix adjust.
 Identities = 288/585 (50%), Positives = 437/585 (75%), Gaps = 11/585 (1%)

Query  27   GIIKHDTILSGLSRPLLWMQFFWILIAFAILMNAFLVDDFSVKYVANNSNTQLPNIFKMS  86
            G+ + D+ + + +  + W+ F+ +  AF +L++AF+V+DF+V YVA NSNTQLP  ++++
Sbjct  27   GVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVA  86

Query  87   AVWGAHEGSLLLWALILTAWSVAVSIFSRRLPDEVLNHiliilglisigfllflllTSNP  146
            A WGAHEGSLLLW L++++W++AV++FSR++P +++ ++L ++G++  GFL F+L+TS P
Sbjct  87   ATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGP  146

Query  147  FER-LDMVPIQGRELNPLLQDFGLIIHPPMLYMGYVGMAVPFAFVLSSLIRGQLDSTWLR  205
            F R L   P++GR+LNPLLQD GLI+HPP+LYMGYVG +V+FAF +++L+ G+LDS+  R
Sbjct  147  FARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTR  206

Query  206  WSRPWTLIAWAFLTFGITLGSWWAYYELGWGGWWFWDPVENASFMPWLVATALVHSLSVS  265
             +RPWTL AW FLT+GI LGS WAYYELGWGGWWFWDPVENASFMPWL +TAL+HS++V+
Sbjct  207  FARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVT  266

Query  266  EKRGVFKHWTVLLAIsgfslsllgtflVRSGILTSVHSFAADPARGLFILIFLVIVVGGS  325
            E+R+ FK WT+LL+I +FSL LLGTFLVRSG+L SVH+FA+DPARG+FIL F+V+V GGS
Sbjct  267  EQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGS  326

Query  326  LVLYAWRASLMQSNNTFSFLSRESGllvnnvllvAAMSSVFlgtlypllldalglgKISV  385
            L+L+A R+  ++S    ++ SRES LL NNVLL+AAM  V+LGTL PL+   LGLG ISV
Sbjct  327  LLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISV  386

Query  386  GAPYFSAVFVPIMILALLVMVIAPFLRWKKDTTQRVAGLLKWVWIGVGLLFVISALLT--  443
            G P+F+++F  +M+   L++ ++P++RW +D  + +  LL   W +V   +V+S LL   
Sbjct  387  GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLL---WAAVVTTLVLSVLLPWL  443

Query  444  -DNTSVLLAVF---LFIWIVMHSLVLLFQRLNQKGSMSFAFIGMIFAHIGIAVFLLGATV  499
             ++  + ++     +  WI + ++    QR+++    S+++ GM+ AH+G+AV + G + 
Sbjct  444  LEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAF  503

Query  500  TTQYGVEKDIKMDIDKPITIAGYDFIFKGVTHLFGQNYQGNKGHVEVYFENEKISDLRPE  559
            + +Y+VE+D++M  + ++TI +Y F F+ V ++ G NY+G  + + V  + E  + L++E
Sbjct  504  SQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAE  563

Query  560  KRQYVTG-MPMTEAAIDPSLYRDIYIVLGESLENDSWSLRIYYKP  603
            KR Y T+ M MTEAAID +L RD+Y  LGE L+N++W++R+YYKP
Sbjct  564  KRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKP  608

460) ccmF in NC_005241


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  385 bits (1448),  Expect = 5e-108, Method: Compositional matrix adjust.
 Identities = 341/602 (57%), Positives = 453/602 (76%), Gaps = 14/602 (2%)

Query  53   AFGSLTWAFVSNDFSVRYVAANANTALPLTYRIAAVWGGHEGSMLLWTLMLGLWSTAVSF  112
            AF  L  AFV NDF+V YVA+N+NT LP+ YR+AA WG+HEGS+LLW L+++ W+ AV+ 
Sbjct  53   AFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAV  112

Query  113  CSRQRPLAVVARVLGVMGTISAGfllfllfASNPFLRLLPP-AMEGRDLNPLLQDPGMVF  171
             SRQ P  +VARVL+VMG + AGFL F+LF+S PF R LP+ ++EGRDLNPLLQDPG++F
Sbjct  113  FSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIF  172

Query  172  HPPLLYMGYVGFSVTfafavaallagradaawarwSRPWTTVAWALLTLGIMLGSAWAYY  231
            HPPLLYMGYVGFSV+FAFA+AALL+GR D+A +R +RPWT  AW +LTLGI+LGSAWAYY
Sbjct  173  HPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYY  232

Query  232  ELGWGGWWFWDPVENASFMPWLAGTALMHSLAVTEKRGAFRAWTVLLAIftfslsllgtf  291
            ELGWGGWWFWDPVENASFMPWLAGTAL+HS+AVTE+R++F+AWT+LL+I +FSL LLGTF
Sbjct  233  ELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTF  292

Query  292  lVRSGVLTSVHAFAVDPKRGIFIlallglvtglsltlYGWRAPRLARRVEFSVAARESll  351
            LVRSGVL SVHAFA DP RG+FILA++ LVTG SL L++ R+ R+  RV+ ++ +RESLL
Sbjct  293  LVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLL  352

Query  352  lannvllavaaatvllgtlypllldvlglgKISVGPAYFEQVFVPLMAPAVLLMGAAPLA  411
            L+NNVLL  A   VLLGTL PL+   LGLG ISVG ++F+ +F  LM P  LL+G +PL 
Sbjct  353  LGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLV  412

Query  412  RWRHGGLPDMARRLRWAAAASIVVGLGLL--LVQRNasalaglglvlaawcglSAVASLS  469
            RW ++  P   R+L WAA  + +V   LL  L++ +  A++++G+ +A W ++ AVA   
Sbjct  413  RWGRDR-PRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAV  471

Query  470  TRLRNQQGRRLAALRQLPASYWGMLLSHAGVGVFIAGVTLVSSQESLRELPMRVGHNISV  529
             R+       L        SYWGM+ +H G++V I+G+++  +    R++ MR G+++++
Sbjct  472  QRVSRGTKTSL--------SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTI  523

Query  530  GGYSFRFDGVTQAAGPNYDALRGTLSVSRHGKIVAVLAPERRIYRSQDMPTTEAAIDSGL  589
             +Y F F  V + +GPNY +  + ++V+RHG   AVL +E+R+Y +  M  TEAAID+GL
Sbjct  524  HDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGL  583

Query  590  TRDLYVALGEGVGDGGWAVRIHVKPFVDWIWAGCILMALGGLLAVCDKRYRLRRRAPAPQ  649
            TRDLY ALGE +++G+WAVR+  KPFV WIWAG +LMALGGLL + D RY  RRR P P+
Sbjct  584  TRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRY--RRRKPLPE  641

Query  650  AE  651
            A 
Sbjct  642  AG  643

461) CAP2UW1_0723 in NC_013194


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  383 bits (1440),  Expect = 2e-107, Method: Compositional matrix adjust.
 Identities = 344/598 (58%), Positives = 446/598 (75%), Gaps = 18/598 (3%)

Query  61   FIQNDFSVVYVAQHSNTLLPLEYRVAAVWGGHEGSlllwvvmlvlwtlavaGLSRALPAP  120
            F+ NDF+V YVA +SNT LP+ YRVAA WG+HEGSLLLWV+++  WTLAVA +SR +PA 
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  MVARvlgvlalltagfllfilltSNPFERVLPAVE-EGRDLNPLLQDPGLIFHPPMLYMG  179
            +VARVL+V++++ AGFL FIL+TS PF R LPA   EGRDLNPLLQDPGLIFHPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVAFAFAIAALLSGQLDAAWARWSRPWTTAAWVFLTLGIALGSWWAYYELGWGGWW  239
            YVGFSVAFAFAIAALLSG+LD+A +R +RPWT AAWVFLTLGI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASFMPWLVGTALVHSLAVTEKRGSFKNWTVllaisafslsllGTFLVRSGVLT  299
            FWDPVENASFMPWL GTAL+HS+AVTE+R++FK WT+LL+I AFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFATDPRRGIFILVFLVAVIGSSLALFAWRAPKVGLGGRFALLSRESllltnnvllv  359
            SVHAFA+DP RG+FIL F+V V G+SL LFA R+ +V      AL SRESLLL NNVLL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  vacasvllGTLYPLLIDALGAGKLSVGPPYFDAVFVPLMLPAAFLIGVAPFARWKQASVG  419
             A   VLLGTL PL+   LG G +SVG P+F+++F  LM+P A+L+GV+P+ RW +    
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  ELARTLRWaflaaalvgvgapfvfgEWK--PLVALSLLLAAWIVLSALLNFVDRVRSTRA  477
            ++ R L WA + ++LV       + E K  ++ A+++ +A WI + A+ + V+RV     
Sbjct  421  NI-RKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV-----  474

Query  478  GQSFFTAARRQPRSFFGMHLAHLGIAVFIVGVTMVGAYQAEKDVKMEIGDTVSVGGYTFR  537
                 + + + + S+ GM  AHLG+AV I G++    Y  E+DV+M  GD+V++ +Y F 
Sbjct  475  -----SRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  538  FNGVRPAQGPNYRALVGDIDLVSEGRTIRKMFPEKRFYVASSMPMTEAAIDTGLLRDVYV  597
            F  VR   GPNYR+ V+ I++  +G     + +EKR+Y +S M MTEAAID GL RD+Y 
Sbjct  530  FREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYA  589

Query  598  SLGEPIDKARPDAAWAVRVYYKPFVDWIWGGCVLMALGGLVAMTDRRYRVKAAAHSPA  655
            +LGE +D    ++AWAVR+YYKPFV WIW+G +LMALGGL+ ++D RYR + +   ++
Sbjct  590  ALGEELD----NGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

462) Mmwyl1_3410 in NC_009654


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  382 bits (1438),  Expect = 3e-107, Method: Compositional matrix adjust.
 Identities = 322/582 (56%), Positives = 442/582 (76%), Gaps = 10/582 (1%)

Query  63   TDDFSVLYVAQNSNSQLPVWYKFSALWGGHEGSLLLWVLILSGWCSAVALKIRTLPEDIg  122
             +DF+V YVA NSN+QLPVWY+ +A WG+HEGSLLLWVL++SGW  AVA+  R +P DI 
Sbjct  63   VNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIV  122

Query  123  pvvlavlgvvcvgflsfllftssPFARLLPDVPADGGDLNPLLQDFGLIVHPPVLYMGYV  182
            + VLAV+G+VC GFL+F+LFTS+PFAR LP  P +G DLNPLLQD GLI HPP+LYMGYV
Sbjct  123  ARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYV  182

Query  183  GFSvafafavaaLITGNLNASWARWARPWTAASWAFLTLGITLGSWWAYYELGWGGWWFW  242
            GFSVAFAFA+AAL++G L+++ +R ARPWT A+W FLTLGI LGS WAYYELGWGGWWFW
Sbjct  183  GFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFW  242

Query  243  DPVENASFMPWLAGTALLHSLAVTEKRGVFKSWTVLLAIFTFSLSLLGAFLVRSGVLTSV  302
            DPVENASFMPWLAGTALLHS+AVTE+R+ FK+WT+LL+I +FSL LLG+FLVRSGVL SV
Sbjct  243  DPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSV  302

Query  303  HSFAADPTRGIFIlalllvlvggslllYAIRAAEVRSTVSFGVTGREAWlllnnilltvl  362
            H+FA+DP+RG+FILA+++++ GGSLLL+A+R+  VRS V+ ++ +RE+ LL NN+LL   
Sbjct  303  HAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAA  362

Query  363  tltvllgtlYPLIFDALGLGKISVGAPYFNSVFTPIALLLMVFMAVGPLSKWHHTKFRVF  422
             L VLLGTL PL+   LGLG ISVG P+FN++FT + + + ++++VGPL +W + + R +
Sbjct  363  MLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNI  422

Query  423  FKVCSISAFIATLSAGLVVYCYEFDFIAW--LSLAVAFWVVFLSFSDWFGKVSAGTKGII  480
             K+   +   + + + L+    E  +IA   +++A+A W+  L+ ++   +VS GTK  +
Sbjct  423  RKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTSL  482

Query  481  PRARQLPRNYYGMLLAHlgmvvtlvgivlvsvNSHESMLRLSPGDRATVAGYEFQFDQME  540
                    +Y GM+ AHLG+ VT+ GI +    S E  +R+ +GD  T+ +Y F F ++ 
Sbjct  483  --------SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  541  QVKGPNYVASKGQFTAYKAGKAVAVLHPEKRFFSTRQQVMTEAALDAGFTRDLYVSLGER  600
            ++ GPNY ++ + +   + G + AVLH+EKR+++T + VMTEAA+D+G+TRDLY +LGE 
Sbjct  535  DITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  601  LEGSAWGVRIYVKSFVRWIWlgglmmmaggllaalDKRYRKR  642
            L+ +AW+VR+Y K+FVRWIW GGL+M  GGLL   D RYR+R
Sbjct  595  LDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

463) ccmF in NC_009465


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  381 bits (1432),  Expect = 9e-107, Method: Compositional matrix adjust.
 Identities = 305/615 (50%), Positives = 457/615 (75%), Gaps = 12/615 (1%)

Query  1    MLIEIGHfalvlalvfaMLQVILPTIGMIKYDVVLSSLSRPLLWMQFFWILIAFVILVNA  60
            M+ E GH  L LAL  A+L  + P  G+ + D  + + +  + W+ F+ +  AF +LV+A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVVDDFSVRYVASNSNTQLPNIFKMSAIWGAHEGslllwalilaawsvavslFSRRLPVE  120
            FVV+DF+V YVA+NSNTQLP  ++++A WGAHEGSLLLW L++++W++AV++FSR++P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  VLNHiliilglisigfllflllTSNPFER-LDIVPLQGRELNPLLQDFGLIIHPPMLYMG  179
            ++ ++L ++G++  GFL F+L+TS PF R L   P++GR+LNPLLQD GLI+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGMAIPFAFVVSSLIRGQLDSTWLRWSRPWTLIAWAFLTLGITLGSWWAYYELGWGGWW  239
            YVG +++FAF +++L+ G+LDS+  R +RPWTL AW FLTLGI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASFMPWLVATALVHSLSVSEKRSAFKHWTVllaissfslsllgtflVRSGILT  299
            FWDPVENASFMPWL +TAL+HS++V+E+R++FK WT+LL+I +FSL LLGTFLVRSG+L 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFATDPDRGLFVLIFLVIVIGGSLVLYAWRATLLMQSSNTFSLLSRESGLLVNNILL  359
            SVH+FA+DP RG+F+L F+V+V GGSL+L+A R+  +    N  +L SRES LL NN+LL
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNN-ALWSRESLLLGNNVLL  359

Query  360  VASMLSVFLGTFYPLLLDALGLGKISVGAPYFGSVFVpimilailimaiipFLRWKEDTT  419
            +A+ML V+LGT+ PL+   LGLG ISVG P+F ++F  +M+   L++++ P++RW  D  
Sbjct  360  MAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRP  419

Query  420  QRVVDLLKRVWIGVGLLFVISVFLI----DNILVLLAV--FLFIWIVSHSLVLLFQRLGQ  473
            + +  LL   W +V   +V+SV+L     D+I+ + AV   +  WI   ++    QR+++
Sbjct  420  RNIRKLL---WAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSR  476

Query  474  KGSINLAFIGMIFAHIGIAVFLLGATVTTQYGVEKDIQMEIDKPITIKGYDFIFKGVTRL  533
                +L++ GM+ AH+G+AV + G + + +Y+VE+D++M  + ++TI +Y F F+ V  +
Sbjct  477  GTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDI  536

Query  534  FGPNYQGNKGHVEVYFEDEKIADLRPEKRQYTTG-MPMTEASIDSSLYRDIYIALGESLE  592
             GPNY+G  + + V  ++E  A L++EKR Y T+ M MTEA+ID++L RD+Y ALGE L+
Sbjct  537  TGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELD  596

Query  593  DDSWSLRIYYKPLVR  607
            +++W++R+YYKP+VR
Sbjct  597  NGAWAVRLYYKPFVR  611

464) ccmF in NC_007493


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  380 bits (1429),  Expect = 1e-106, Method: Compositional matrix adjust.
 Identities = 282/572 (50%), Positives = 396/572 (70%), Gaps = 13/572 (2%)

Query  53   SFAALTWAFVTSDFSVRLVVLNSHTLKPMLYKISGVWGNHEGSLLLWVLILALFGACAAV  112
            +F  L  AFV +DF+V  V  NS+T  P+ Y++++ WG HEGSLLLWVL+++      AV
Sbjct  53   AFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAV  112

Query  113  FGQNLPPTLKARVLAVQGMIGAAFLAFLLFTSNPFLR-MGEVPFDGEDLNPLLQDPGLAF  171
            F++++P+ + ARVLAV GM+ A+FLAF+LFTS PF R +   P +G DLNPLLQDPGL F
Sbjct  113  FSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIF  172

Query  172  HPPFLYLGYVGLSMAFSFAVAALIEGRVDAAWGRWVRPWTLAAWVFLTIGIALGSWWAYY  231
            HPP+LY+GYVG+S+AF+FA+AAL+ GR+D+A  R  RPWTLAAWVFLT+GI LGS WAYY
Sbjct  173  HPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYY  232

Query  232  ELGWGGFWFWDPVENASFMPWLIAAALLHSAIVVEKREALKSWTILLAILAFGFSLIGTF  291
            ELGWGG WFWDPVENASFMPWL ++ALLHS  V E+R ++K+WT+LL+I AF++ L+GTF
Sbjct  233  ELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTF  292

Query  292  IVRSGVITSVHAFANDPERGIFILMILAVFMGGALTLFAARASAMEAKGVFGIVSRESGL  351
            +VRSGV+ SVHAFA+DP RG+FIL ++ +  GG+L LFA R+  + ++   ++ SRES L
Sbjct  293  LVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLL  352

Query  352  VLNNVLLTVACFVVFIGTIWPLLAELLWGRKLSVGAPFFNAAFTPFMVVIALVLPLGAVL  411
            + NNVLL  A +VV++GT+ PL+   L    +SVG PFFN+ FT +MV +AL+L +G+++
Sbjct  353  LGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLV  412

Query  412  PWKRAELGRGMRPl--wgalalsaalgalvfalQTGRSALGPVGLALGAWLVFGTLLDlw  469
             W R +  R +R L   + ++       L   L+    A+ +VG+A++ W+   ++ +  
Sbjct  413  RWGR-DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAV  471

Query  470  grtgrgalggrlarlrrlpraDWGKATAHAGLGVTIFAVAAITAWQVESIRVMKPGETFA  529
             R +RG+  +            WG  +AH GL+VTI ++A      VE    M++G++ +
Sbjct  472  QRVSRGTKTSLSY---------WGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVT  522

Query  530  LGRYDVLLEGVREIEGPNYRSTVADFRVTRDGAEVATLHPEKRVYPVAAMPTTEAAIDYG  589
            +  Y   +  VR+I GPNYR+ VA + VTR+G   A LH+EKR+Y  + M  TEAAID G
Sbjct  523  IHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGG  582

Query  590  FTRDLYLVIGDPQEGGGYAVRSYIKPFANWIW  621
            +TRDLY  +G+  + G+ AVR Y KPF  WIW
Sbjct  583  LTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

465) Rsph17029_1290 in NC_009049


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  380 bits (1429),  Expect = 1e-106, Method: Compositional matrix adjust.
 Identities = 282/572 (50%), Positives = 396/572 (70%), Gaps = 13/572 (2%)

Query  53   SFAALTWAFVTSDFSVRLVVLNSHTLKPMLYKISGVWGNHEGSLLLWVLILALFGACAAV  112
            +F  L  AFV +DF+V  V  NS+T  P+ Y++++ WG HEGSLLLWVL+++      AV
Sbjct  53   AFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAV  112

Query  113  FGQNLPPTLKARVLAVQGMIGAAFLAFLLFTSNPFLR-MGEVPFDGEDLNPLLQDPGLAF  171
            F++++P+ + ARVLAV GM+ A+FLAF+LFTS PF R +   P +G DLNPLLQDPGL F
Sbjct  113  FSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIF  172

Query  172  HPPFLYLGYVGLSMAFSFAVAALIEGRVDAAWGRWVRPWTLAAWVFLTIGIALGSWWAYY  231
            HPP+LY+GYVG+S+AF+FA+AAL+ GR+D+A  R  RPWTLAAWVFLT+GI LGS WAYY
Sbjct  173  HPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYY  232

Query  232  ELGWGGFWFWDPVENASFMPWLIAAALLHSAIVVEKREALKSWTILLAILAFGFSLIGTF  291
            ELGWGG WFWDPVENASFMPWL ++ALLHS  V E+R ++K+WT+LL+I AF++ L+GTF
Sbjct  233  ELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTF  292

Query  292  IVRSGVITSVHAFANDPERGIFILMILAVFMGGALTLFAARASAMEAKGVFGIVSRESGL  351
            +VRSGV+ SVHAFA+DP RG+FIL ++ +  GG+L LFA R+  + ++   ++ SRES L
Sbjct  293  LVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLL  352

Query  352  VLNNVLLTVACFVVFIGTIWPLLAELLWGRKLSVGAPFFNAAFTPFMVVIALVLPLGAVL  411
            + NNVLL  A +VV++GT+ PL+   L    +SVG PFFN+ FT +MV +AL+L +G+++
Sbjct  353  LGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLV  412

Query  412  PWKRAELGRGMRPl--wgalalsaalgalvfalQTGRSALGPVGLALGAWLVFGTLLDlw  469
             W R +  R +R L   + ++       L   L+    A+ +VG+A++ W+   ++ +  
Sbjct  413  RWGR-DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAV  471

Query  470  grtgrgalggrlarlrrlpraDWGKATAHAGLGVTIFAVAAITAWQVESIRVMKPGETFA  529
             R +RG+  +            WG  +AH GL+VTI ++A      VE    M++G++ +
Sbjct  472  QRVSRGTKTSLSY---------WGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVT  522

Query  530  LGRYDVLLEGVREIEGPNYRSTVADFRVTRDGAEVATLHPEKRVYPVAAMPTTEAAIDYG  589
            +  Y   +  VR+I GPNYR+ VA + VTR+G   A LH+EKR+Y  + M  TEAAID G
Sbjct  523  IHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGG  582

Query  590  FTRDLYLVIGDPQEGGGYAVRSYIKPFANWIW  621
            +TRDLY  +G+  + G+ AVR Y KPF  WIW
Sbjct  583  LTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

466) ccmF in NC_014640


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  380 bits (1427),  Expect = 2e-106, Method: Compositional matrix adjust.
 Identities = 300/571 (53%), Positives = 415/571 (73%), Gaps = 20/571 (3%)

Query  60   AFVDNDFSVLYVAANSHADLPAAYRFAAVWGGHEGSlllwlylltawtlavalCSRRLPL  119
            AFV NDF+V YVA+NS+++LP  YR AA WG+HEGSLLLW+ L+++WTLAVA+ SR++P 
Sbjct  60   AFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPA  119

Query  120  PFVGRVLAVMGWISVGfllfllflSNPFERLMPP-AMAGRDLNPLLQDPGMIVHPPMLYM  178
             +V+RVLAVMG +  GFL F+LF S PF R +P+ ++ GRDLNPLLQDPG+I HPP+LYM
Sbjct  120  DIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYM  179

Query  179  GYVGFSVAFAFAIAALLSGELDAMWARWVRPWTLAAWTFLTIGILLGSAWAYYVLGWGGW  238
            GYVGFSVAFAFAIAALLSG LD+  +R  RPWTLAAW FLT+GI+LGSAWAYY LGWGGW
Sbjct  180  GYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGW  239

Query  239  WFWDPVENASFMPWLAGTALIHSLIVTERRGAFRSWTVLLAICTFSLSILGTFLVRSGVL  298
            WFWDPVENASFMPWLAGTAL+HS+ VTE+R++F++WT+LL+IC+FSL +LGTFLVRSGVL
Sbjct  240  WFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVL  299

Query  299  TSVHAFAVDPGRGLYILGFMLVIVGGSLALYAWRAPKvglgggfsllsreslllsnnvvl  358
             SVHAFA DP+RG++IL+FM+++ GGSL L+A R+ +V      +L SRESLLL+NNV+L
Sbjct  300  VSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLL  359

Query  359  tvAAGSVLLGTLYPVVLDVLEWGKISIGPPYFEAVFVPLMTPAIFLMGVGPVARWKQAEL  418
              A   VLLGTL P+V   L  G IS+G P+F+++F  LM P  +L+GVGP+ RW +   
Sbjct  360  MAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRP  419

Query  419  PDLGRRLRIAFAVSVATalllplampgparlGSPMVMLGlwlaawsvasaaTHAWQRLTD  478
             ++ + L+ A   ++  ++LLP              +L   + A +  + A   W  +  
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPW-------------LLEDKIIAMTAVGMAMACWIAVLA  466

Query  479  GDGHWLRRLGRQPRS----WYGMLLAHAGIGIFIAGVTLANGYEVKQELRMEIGSTQEAG  534
                 ++R++R  ++    W GM+ AH G+++ I+G+++++ Y V +++RM  G +    
Sbjct  467  VAEA-VQRVSRGTKTSLSYW-GMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIH  524

Query  535  GYAFTFASIGPAAGPNYSAQRAVFPVTRDGKPVLTLYPEKRLYTVQDMALSQADIDSGFT  594
            +Y FTF  +   +GPNY +  A++ VTR+G P   L +EKRLY    M +++A ID+G+T
Sbjct  525  DYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLT  584

Query  595  RDLFVALGDPVGDKAWTVRLQVKPFMTWIWT  625
            RDL+ ALG+ +++ AW+VRL  KPF+ WIW+
Sbjct  585  RDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

467) Mlg_1687 in NC_008340


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  379 bits (1425),  Expect = 3e-106, Method: Compositional matrix adjust.
 Identities = 330/616 (54%), Positives = 454/616 (74%), Gaps = 15/616 (2%)

Query  30   RGDRRWMAAGHWMAWGVLLFLATAYACLTTAFVQYDFSVAYVAQHANLALPLHYRVTAVW  89
            RGD R MA++   AW +++ +A A+  L  AFV  DF+VAYVA ++N  LP+ YRV+A W
Sbjct  30   RGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATW  89

Query  90   GGHEGSlllwvlilalwtvavSHFSRSLPRTMVARIIAVLGAVTVGFLAFMIFTSNPFDR  149
            G+HEGSLLLWVL+++ WT+AV+ FSR +P  +VAR++AV+G V  GFLAF++FTS PF R
Sbjct  90   GAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFAR  149

Query  150  LIPA-PLDGRDLNPLLQDPGMIFHPPLLYMGYVGFSVTFAFAIAALLNGRLDaawarwsr  208
             +PA P++GRDLNPLLQDPG+IFHPPLLYMGYVGFSV+FAFAIAALL+GRLD+A +R +R
Sbjct  150  TLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFAR  209

Query  209  pwaavawaFLTLGIALGSWWAYYELGWGGWWFWDPVENASLMPWLTGTALIHSLAVTDKR  268
            PW+  AW FLTLGI LGS WAYYELGWGGWWFWDPVENAS+MPWL+GTAL+HS+AVT++R
Sbjct  210  PWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQR  269

Query  269  GGFRVWTLMLAIVTFGLTLLGAFLVRSGVITSVHAFATDPERGTFILAFLVLSMGLALAL  328
            +GF+ WTL+L+I +F+L LLG+FLVRSGV+ SVHAFA+DP RG FILAF+VL  G +L L
Sbjct  270  AGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLL  329

Query  329  YTWRAPRVGPGPAFGYLSRESgllannlllavatltvllgtlYPLAMDALGGGRISVGPP  388
            ++ R+ RV +    +  SRES LL+NN+LL  A L VLLGTL PL    LG G ISVG P
Sbjct  330  FAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEP  389

Query  389  YFEAVFTPvmlpllvlmglgpllRWKLHAPGELARaiagivvaagviggL--WPLALGAW  446
            +F+++FT +M+P+ +L+G+GPL+RW  + P ++ + + + VV++ V++ L  W L     
Sbjct  390  FFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKI-  448

Query  447  SPLTALSTVIASFILLAIALDLHGRLRPATPGWIGLRRRLKGLKPHYLGMHLAHAGVAVF  506
             ++TA++  +A  I +    +   R+  +T                Y GM  AH G+AV 
Sbjct  449  IAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT-----------SLSYWGMVAAHLGLAVT  497

Query  507  LIGVAMVSTYEVERDVRLAPGDEVTVAGYTFTFLGTHERVGSNFLADTGRVTVTRDGQAI  566
            + G+A    Y VERDVR+ +GD VT+ +Y FTF   ++  G+N+ ++ + + VTR+G++ 
Sbjct  498  ITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPE  557

Query  567  ARLHPEKRHYPSQSMPMTQAALDRGLFRDLYVSLGDPLDDGAWVVRVYYKPYMTWLWggc  626
            A LH+EKR Y +  M MT+AA+D GL RDLY +LG+ LD+GAW VR+YYKP++ W+W+G 
Sbjct  558  AVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGG  617

Query  627  lfltlgallaaTDRRY  642
            L+++LG+LL  +D RY
Sbjct  618  LLMALGGLLCLADPRY  633

468) S58_30860 in NC_020453


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  379 bits (1425),  Expect = 3e-106, Method: Compositional matrix adjust.
 Identities = 293/649 (46%), Positives = 446/649 (69%), Gaps = 12/649 (1%)

Query  1    MTAEAGSFALILALLVSLMQSIVPFAALRRQSAVIAGFVRHAALAQFLFVATAFACLTSL  60
            M +E G   L LAL V+L+ S+ P+ ++ R  A + +     A   F+ VA AF  L   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVHSDFSVQVVAANSHTLKPLLYKVSGVWGNHEGSMLLWVLILSVFGAAVALFGTNLPDR  120
            FV +DF+V  VA+NS+T  P+ Y+V++ WG HEGS+LLWVL++S    AVA+F+ ++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LQSNVLGVHGMIGLGFLAFIVSTSNPFAR-LTEAPLEGNGLNPILQDPGLAFHPPFLYLG  179
            + + VL+V GM+  GFLAFI+ TS PFAR L   P+EG +LNP+LQDPGL FHPP+LY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSMAFSFSVAALIEGKVDAAWARWVRPWVLAAWCFLTIGITLGSAWAYYTLGWGGWW  239
            YVGFS+AF+F++AAL+ G++D+A +R  RPW LAAW FLT+GI LGSAWAYY LGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASFMPWLAGTALLHSALVVERRSALQSWTILLGIVTFSLSLIGTFLVRSGVLT  299
            FWDPVENASFMPWLAGTALLHS  V E+R+++++WT+LL+I +FSL L+GTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFAQDPSRGAFILALILVATGGALTLYAVRAPGLKHGALFGVVSRESglvlnnvllt  359
            SVHAFA DP+RG FILA++++ TGG+L L+AVR+  ++     ++ SRES L+ NNVLL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  tavatvflgtfYPLLVDMMGNDKISVGPPYYNMTFIPIMVPLLLAMVIGPVLKWKRDlla  419
            +A+  V+LGT+ PL+   +G + ISVG P++N  F  +MVP+ L + +GP+++W RD   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRD---  417

Query  420  aalqrvrlagglavfavvailiaTFGHHVLVAFFFGIAVWLVVGSLMILAHRVRLGTTTP  479
                            + A +++T+   VL++ ++   +  + +  M +A ++ + + + 
Sbjct  418  --------RPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAE  469

Query  480  LATSLNLARTTPFAVYGLVLAHAGMGVTVAGITGMTAWASEKVEMLRPGQSLQLAGYDIK  539
                ++ +  T+++  G+V AH G++VT++GI+     + E+   +R+G+S+ + +Y + 
Sbjct  470  AVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  540  LRAIGKFPGPNYEAERGTFDITRNGKPFTQLSSERRFYPVRQQLTTAAGIRTNLIWNVYV  599
            +R +  + GPNY +  + +++TR+G P + L +E+R+Y   + + T A+I   L +++Y 
Sbjct  530  FREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYA  589

Query  600  TLGDPDDKGGWAVRCYYHPLVPLVWIGALMMACGGFISLADRRFRIGAP  648
            +LG+  D+G+WAVR YY P+V  +W G+L+MA GG++ LAD R+R   P
Sbjct  590  ALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKP  638

469) NH44784_040651 in NC_021285


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  379 bits (1424),  Expect = 4e-106, Method: Compositional matrix adjust.
 Identities = 326/599 (55%), Positives = 439/599 (74%), Gaps = 16/599 (2%)

Query  60   SFLQNDYSVLYVAANSHADLPAAYRFAAVWGGHEGslllwlyllsawtlaVALRSARLPP  119
            +F+ ND++V YVA+NS+++LP  YR AA WG+HEGSLLLW+ L+S+WTLAVA+ S ++P+
Sbjct  60   AFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPA  119

Query  120  AFVARVLAVMGWISAGfllfllflSNPFERLMPP-AMAGRDLNPLLQDPGMIVHPPMLYM  178
             +VARVLAVMG + AGFL F+LF S PF R +P+ ++ GRDLNPLLQDPG+I HPP+LYM
Sbjct  120  DIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYM  179

Query  179  GYVGFSVAFAFAIAALLSGELDALWARWVRPWTLAAWTFLTIGILLGSAWAYYVLGWGGW  238
            GYVGFSVAFAFAIAALLSG LD+  +R  RPWTLAAW FLT+GI+LGSAWAYY LGWGGW
Sbjct  180  GYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGW  239

Query  239  WFWDPVENASFMPWLAGTALIHSLIVTERRGAFRSWTVLLAICAFSLSLLGTFLVRSGVL  298
            WFWDPVENASFMPWLAGTAL+HS+ VTE+R++F++WT+LL+ICAFSL LLGTFLVRSGVL
Sbjct  240  WFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVL  299

Query  299  TSVHAFAVDPGRGLYILGFMTLVVGGSLALYAWRAPKVGLGGGFALLSREslllannvvl  358
             SVHAFA DP+RG++IL+FM LV GGSL L+A R+ +V      AL SRESLLL+NNV+L
Sbjct  300  VSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLL  359

Query  359  tvaaasvllgtlYPVVLDVLDWGKISIGPPYFEAVFVPLMTPAIFLMGVGPVARWKQAKV  418
              A   VLLGTL P+V   L+ G IS+G P+F+++F  LM P  +L+GVGP+ RW + + 
Sbjct  360  MAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRP  419

Query  419  PELGRRLGIAFAVSVATAVLLPLAMPGPARLGSPlvvlglwlaawsvasaaahawQRLTD  478
             ++ + L  A   ++  +VLLP  + +      ++  +G+ +A W    A A+A QR++ 
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKI---IAMTAVGMAMACWIAVLAVAEAVQRVSR  476

Query  479  GDGHWPRRLARQPRAWYGMLLAHAGIGVFIAGATLANGYEVKQELRLELGAEQEAGSYRF  538
            G        ++ + +  GM+ AH G++V I+G ++++ Y V +++R+  G       YRF
Sbjct  477  G--------TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRF  528

Query  539  TFTALAPASGPNYSAQRAEFRVTRADGQPVTTLYPEKRHYTVQDMPLSQAAIDSGFSRDL  598
            TF  +   +GPNY +  A + VTR +G+P + L +EKR Y    M +++AAID+G++RDL
Sbjct  529  TFREVRDITGPNYRGGVALIGVTR-HGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  599  FVALGEPAGATAWTVRIQVKPFMAWIWSGCllmalggllaagDRRYRQETVRAPHPRAG  657
            + ALGE  +  AW+VR+  KPF+ WIW+G LLMALGGLL  +D RYR+   R P P AG
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRR---RKPLPEAG  643

470) RSKD131_0944 in NC_011963


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  379 bits (1424),  Expect = 4e-106, Method: Compositional matrix adjust.
 Identities = 282/572 (50%), Positives = 396/572 (70%), Gaps = 13/572 (2%)

Query  53   SFAALTWAFVTSDFSVRLVVLNSHTLKPMLYKISGVWGNHEGSLLLWVLILALFGACAAV  112
            +F  L  AFV +DF+V  V  NS+T  P+ Y++++ WG HEGSLLLWVL+++      AV
Sbjct  53   AFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAV  112

Query  113  FGQNLPPTLKARVLAVQGMIGAAFLAFLLFTSNPFLR-MGEVPFDGEDLNPLLQDPGLAF  171
            F++++P+ + ARVLAV GM+ A+FLAF+LFTS PF R +   P +G DLNPLLQDPGL F
Sbjct  113  FSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIF  172

Query  172  HPPFLYLGYVGLSMAFSFAVAALIEGRVDAAWGRWVRPWTLAAWVFLTIGIALGSWWAYY  231
            HPP+LY+GYVG+S+AF+FA+AAL+ GR+D+A  R  RPWTLAAWVFLT+GI LGS WAYY
Sbjct  173  HPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYY  232

Query  232  ELGWGGFWFWDPVENASFMPWLIAAALLHSAIVVEKREALKSWTILLAILAFGFSLIGTF  291
            ELGWGG WFWDPVENASFMPWL ++ALLHS  V E+R ++K+WT+LL+I AF++ L+GTF
Sbjct  233  ELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTF  292

Query  292  IVRSGVITSVHAFANDPERGIFILMILAIFMGGALTLFAARASAMEAKGVFGIVSRESGL  351
            +VRSGV+ SVHAFA+DP RG+FIL ++ +  GG+L LFA R+  + ++   ++ SRES L
Sbjct  293  LVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLL  352

Query  352  VLNNVLLTVACFVVFIGTIWPLLAELLWGRKLSVGAPFFNAAFTPFMVVIALVLPLGAVL  411
            + NNVLL  A +VV++GT+ PL+   L    +SVG PFFN+ FT +MV +AL+L +G+++
Sbjct  353  LGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLV  412

Query  412  PWKRAELGRGMRPl--wgalalsaalgalvfalQTGRSALGPVGLALGAWLLFGTLLDlw  469
             W R +  R +R L   + ++       L   L+    A+ +VG+A++ W+   ++ +  
Sbjct  413  RWGR-DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAV  471

Query  470  grtgrgalggrlarlqrlpraDWGKATAHAGLGVTIFAVAAITAWQVESIRVMKPGETFA  529
             R +RG+  +            WG  +AH GL+VTI ++A      VE    M++G++ +
Sbjct  472  QRVSRGTKTSLSY---------WGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVT  522

Query  530  LGRYDVLLEGVREIEGPNYRSTVADFRVTRDGAEVATLHPEKRVYPVAAMPTTEAAIDYG  589
            +  Y   +  VR+I GPNYR+ VA + VTR+G   A LH+EKR+Y  + M  TEAAID G
Sbjct  523  IHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGG  582

Query  590  FTRDLYLVIGDPQEGGGYAVRSYIKPFANWIW  621
            +TRDLY  +G+  + G+ AVR Y KPF  WIW
Sbjct  583  LTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

471) NH44784_040501 in NC_021285


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  378 bits (1420),  Expect = 8e-106, Method: Compositional matrix adjust.
 Identities = 313/591 (53%), Positives = 434/591 (74%), Gaps = 10/591 (1%)

Query  61   FIANDFSVRLVADNSHTRTPLIYRITAVWGNHEGSMLLWIVSLSLWTAAVTRWSRGLPEA  120
            F+ NDF+V  VA+NS+T+ P+ YR++A WG HEGS+LLW++ +S WT AV+  SR +P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  FTARVLGVLGTVSAGFTAFTLLTSNPFSRLLPAAP-EGRDLNPLLQDPGMIIHPPLLYLG  179
            + ARVL+V+G V AGF AF L+TS PF+R LPA P EGRDLNPLLQDPG+I+HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSiafafaiaaLMTGRLDAAWARWSRPWTVAAWVLLTAGIAVGSSWAYYELGWGGWW  239
            YVGFS+AFAFAIAAL++GRLD+A +R +RPWT+AAWV+LT GI +GS+WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASFMPWLLGTALIHSLAVTEKRGAFRGWTVLLAIGTFSLSLLGTFLVRSGVVT  299
            FWDPVENASFMPWL GTAL+HS+AVTE+R++F++WT+LL+I +FSL LLGTFLVRSGV+ 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFATDPARGLFIlcllvavvgaslllyaWRAPRLQGGGRFELVSRDaallannalls  359
            SVHAFA+DPARG+FIL ++V V G+SLLL+A R+ R+++     L SR++ LL+NN LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  vacaavllgtlypllldalglgKISVGPPYFDTTFVPLMTPVLILLVPGALARWKADTWQ  419
             A   VLLGTL PL+   LGLG ISVG P+F+T F  LM P  +LL  G+L RW  D  +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  rlarrlrpatlaSVLLGPALGYGLGH-FTWRTCLGLSLAAWIVlgslqllgerlrggrag  478
             + + L++A +++++L+  L   L + +   T +G+++A WI + ++    +R       
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQR-------  473

Query  479  IATRLRGIPGSWWGMWLAHLGLGVFIIGVTMVNSFQSQLDVRMLPGQTARLAGYTFTFGG  538
              +R    + S WGM  AHLGL+V I G++  +++  + DVRM +G++  + +Y FTF  
Sbjct  474  -VSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  539  VEQVAGPNWIAARATLDVARGGKYVATLRPETRRYVAQAMPMTQSAIDVGPLRDLYTALG  598
            V +++GPN  ++ A ++V+R G   A L++E R Y +  M MT++AID G  RDLY+ALG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  599  EGLPDGSWIVNLFHKPFISWIWggcalmmlgglaaagDRRYRKQASRRDAA  649
            E L +G+W V L+ KPF+ WIW+G  LM LGGL   +D RYR++ +  +A+
Sbjct  593  EELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

472) Rsph17025_1169 in NC_009428


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  378 bits (1420),  Expect = 8e-106, Method: Compositional matrix adjust.
 Identities = 316/646 (49%), Positives = 454/646 (71%), Gaps = 17/646 (2%)

Query  1    MIVELGHFALVLSLGVALVQSFVPLVGAHKRWSGWMAVAEPAAMTQLLLIGFS--FAALT  58
            M+ E GH  L L+LGVAL+ S  PL G  +   ++M +A ++  + LL+I  +  F  L 
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARG-DARM-MASAGVFAWLLFICVAGAFFVLV  58

Query  59   WAFVTSDFSVRLVVLNSHTLKPMLYKISGVWGNHEGSLLLWVLIlalfgacaaafgQNLP  118
             AFV +DF+V  V  NS+T  P+ Y++++ WG HEGSLLLWVL+++      A F++++P
Sbjct  59   HAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVP  118

Query  119  PTLKARVLAVQGMIGAAFLAFLLFTSNPFLRVGEP-PFDGQDLNPLLQDPGLAFHPPFLY  177
            + + ARVLAV GM+ A+FLAF+LFTS PF R   + P +G+DLNPLLQDPGL FHPP+LY
Sbjct  119  ADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLY  178

Query  178  LGYVGLSMAFSFAVAALIEGRVDAAWGRWVRPWTLAAWVFLTIGIALGSWWAYYELGWGG  237
            +GYVG+S+AF+FA+AAL+ GR+D+A  R  RPWTLAAWVFLT+GI LGS WAYYELGWGG
Sbjct  179  MGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGG  238

Query  238  FWFWDPVENASFMPWLIAAALLHSAIVVEKREALKSWTILLAILAFGFSLIGTFIVRSGV  297
             WFWDPVENASFMPWL ++ALLHS  V E+R ++K+WT+LL+I AF++ L+GTF+VRSGV
Sbjct  239  WWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGV  298

Query  298  ITSVHAFANDPERGVFILLILAVFMGGALTLFAARASAMEAKGVFGIVSRESGLVLNNVL  357
            + SVHAFA+DP RG+FIL ++ +  GG+L LFA R+  + ++   ++ SRES L+ NNVL
Sbjct  299  LVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVL  358

Query  358  LTVACFVVFIGTIWPLVAELLWDRKLSVGAPFFNAAFTPFMvvialvlplaavlpWKRAQ  417
            L  A +VV++GT+ PLV   L    +SVG PFFN+ FT +MV +AL+L +++++ W R +
Sbjct  359  LMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR  418

Query  418  PGRAMRPlwgalalsvalgglVFA--MQTGRSALGPVGLALGSWLVLGAIVDLWgrtgrg  475
            P R +R L  A  ++  + +++++  ++    A+ +VG+A++ W+ + A+ +        
Sbjct  419  P-RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAE--------  469

Query  476  elagrlrrlsrlprADWGKATAHAGLGVTIFAVAGITAWQVEDIRVMRPGESFTLNAYSI  535
                R+ R ++ + + WG  +AH GL+VTI ++A      VE    MR+G+S T++ Y +
Sbjct  470  -AVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRF  528

Query  536  TLEGVREVEGPNYASVMADFRVTRDGREVATLHPEKRSYPVAAMPTTEAAIDYGFTRDLY  595
            T+  VR++ GPNY + +A + VTR+G   A LH+EKR Y  + M  TEAAID G+TRDLY
Sbjct  529  TFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLY  588

Query  596  LVIGDAQEGGGYAVRSYIKPFANWIWggsmlmalggllslTDRRYR  641
              +G+  + G+ AVR Y KPF  WIW+G++LMALGGLL L+D RYR
Sbjct  589  AALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

473) ccmF in NC_010170


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  377 bits (1417),  Expect = 1e-105, Method: Compositional matrix adjust.
 Identities = 341/615 (56%), Positives = 442/615 (72%), Gaps = 7/615 (1%)

Query  30   RGNPRWIALAAPTAWGQFTflllafaalahaflGDDFSVAYVARNANSALPWYYKFSAIW  89
            RG++R +A A+  AW  F  +  AF  L HAF+ +DF+VAYVA N+N+ LP  Y+ +A W
Sbjct  30   RGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATW  89

Query  90   GAHEgslllwalllagwsCAVCVGSRQLPRTMRARVLAVMGMISVGFLLFLIATSNPFER  149
            GAHEGSLLLW LL++GW+ AV V SRQ+P  + ARVLAVMGM+  GFL F++ TS PF R
Sbjct  90   GAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFAR  149

Query  150  LLPDVPADGNDLNPLLQDFGLIVHPPMLYMGYVGFSVAFAFAIAALLDGRLDAAWARWSR  209
             LP  P +G DLNPLLQD GLI HPP+LYMGYVGFSVAFAFAIAALL GRLD+A +R +R
Sbjct  150  TLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFAR  209

Query  210  PWTLVAWAFLGLGIALGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHSLAATEKR  269
            PWTL AW FL LGI LGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS+A TE+R
Sbjct  210  PWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQR  269

Query  270  GVFKSWTVllaiaafslsllGTFLVRSGVLTSVHAFATDPARGVFILCFLLVVVGGSlal  329
            + FK+WT+LL+I AFSL LLGTFLVRSGVL SVHAFA+DPARG+FIL F+++V GGSL L
Sbjct  270  AGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLL  329

Query  330  falrapavasaaSFGTWSRETlllinnlllSVAAAMILLGTLYPLVLDALTGAKLSVGPP  389
            FA+R+  V S  + + WSRE+LLL NN+LL  A  ++LLGTL PLV   L  + +SVG P
Sbjct  330  FAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEP  389

Query  390  YFNALFVPlmallmaatalgvaaRWKDTPPRWLAGMLGPVlaaslafaagaaalaRDSRW  449
            +FN++F  LM  +    ++G   RW    PR +  +L + + ++L ++   + L  D   
Sbjct  390  FFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKII  449

Query  450  TVGAVCL-LAAWIVLGALRDIVDKTrhlglrrglpalgrSYWGMQLAHLGLAMCALGVVL  508
            ++ AV + +A WI + A+ + V++             + SYWGM  AHLGLA+   G+ +
Sbjct  450  AMTAVGMAMACWIAVLAVAEAVQRV------SRGTKTSLSYWGMVAAHLGLAVTITGIAF  503

Query  509  NSAGNLERDLRMAPGDAVELGGYRFVFEGTTARPGPNFVAERGTMQILRDGRHVATLHPE  568
            +   ++ERD+RM +GD+V + +YRF F       GPN+ +  + + + R+G   A LH+E
Sbjct  504  SQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAE  563

Query  569  KRVYHAQQNAMTEAAIFAGFTRDLFTALGEPLDNGAWAVRVHIKPFVRWIWlgallmaag  628
            KR+Y++ +  MTEAAI +G+TRDL++ALGE LDNGAWAVR+  KPFVRWIW G+LLMA G
Sbjct  564  KRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALG  623

Query  629  gllaaTDRRYRRRVP  643
            GLL  +D RYRRR P
Sbjct  624  GLLCLADPRYRRRKP  638

474) amb4200 in NC_007626


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  377 bits (1416),  Expect = 2e-105, Method: Compositional matrix adjust.
 Identities = 307/613 (51%), Positives = 441/613 (72%), Gaps = 17/613 (2%)

Query  36   MNVAGPAATLQFLFIAMAFGALTNAYVTSDFSVMNVAQNSHTDKPMLYKVAGVWGNHEGS  95
            M  AG  A L F+ +A AF  L +A+V +DF+V  VA NS+T+ P+ Y+VA+ WG HEGS
Sbjct  36   MASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGS  95

Query  96   LLLWITILSLFGFAVTLFGRNLPPGLKSRALAVQAMIAVGFLAFILLTSNPFAR-LDPAP  154
            LLLW+ ++S   +AV++F+R++P+++ +R LAV +M+  GFLAFIL+TS PFAR L + P
Sbjct  96   LLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFP  155

Query  155  VNGQGLNPMLQDPGLAFHPPFLYLGYVGFSMAFSFAIAALLEGRVDAAWARWVRPWTLAA  214
            V+G++LNP+LQDPGL FHPP+LY+GYVGFS+AF+FAIAALL GR+D+A +R  RPWTLAA
Sbjct  156  VEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAA  215

Query  215  WVFLTCGIVLGSwwayytlgwggwwywDPVENASFMPWLAGTALLHSAIVVEKRDALKSW  274
            WVFLT GIVLGS WAYY LGWGGWW+WDPVENASFMPWLAGTALLHS  V E+R ++K+W
Sbjct  216  WVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAW  275

Query  275  TILLAIVAFGLSLLGTFLVRSGVLTSVHAFATDPARGVFILLLLCGAVGGSLALYAARAP  334
            T+LL+I AF+L LLGTFLVRSGVL SVHAFA+DPARG+FIL ++    GGSL L+A R+ 
Sbjct  276  TLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGH  335

Query  335  SMKMGGLFSPISREGALLLNNVLMATGAATVLLGTLYPLIADALNLGKVSVGPPFFNAVF  394
             ++     +  SRE+ LL NNVL+ ++   VLLGTL PL+   L LG +SVG PFFN++F
Sbjct  336  RVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMF  395

Query  395  lplmapmvlvmaaapmmSWKRGDLAGV--LGRLKFIGALALGAAMLVWFLQGGSAGPWWT  452
              LM P  L+++ +P++ W R+    +  L +   + +L L + +L W+L++   +   T
Sbjct  396  TWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVL-SVLLPWLLEDKIIAM--T  452

Query  453  AAGFALAVWLGLGTLWDLAERIGLFSRPGQALARAAKLPNSAWGMVLAHFGLAVFIVGLT  512
            A G A+A W+++ ++          + + Q ++R++K + S WGMV AH+GLAV I G++
Sbjct  453  AVGMAMACWIAVLAV----------AEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIA  502

Query  513  ASSAWTTERIQTQKLGETVTVAGYGITLKAVDEVPGPNYTATRATFEISKGGQAIAVMQP  572
             S   + ER    + G++VT+ +Y +T++ V ++ GPNY +  A + +++ G++ AV+++
Sbjct  503  FSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHA  562

Query  573  EKRLYRQPPRPTTTAAIRSGFTGDLYVVIGDPDPNKGGWVTRLYFNPCIPWLWAGGLLLV  632
            EKRLY  +    T AAI +G+T DLY  +G+ + ++G+W  RLY++P + W+WAGGLL+ 
Sbjct  563  EKRLYNTSRMVMTEAAIDGGLTRDLYAALGE-ELDNGAWAVRLYYKPFVRWIWAGGLLMA  621

Query  633  IGGTISLADRRHR  645
            +GG + LAD R R
Sbjct  622  LGGLLCLADPRYR  634

475) L483_23925 in NC_021491


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  370 bits (1390),  Expect = 2e-103, Method: Compositional matrix adjust.
 Identities = 299/538 (56%), Positives = 411/538 (77%), Gaps = 7/538 (1%)

Query  88   YKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQVMLARVLAVMGMISVGFLSFLII  147
            Y+ +A WGAHEGSLLLW L+++GWT+AV+VFSRQ+P  ++ARVLAVMGM+  GFL+F+++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  148  TSNPFQRLLPQVPTDGRDLNPLLQDFGLIVHPPMLYMGYVgfsvafafaiaallggrlDA  207
            TS PF R LP  P +GRDLNPLLQD GLI HPP+LYMGYVGFSVAFAFAIAALL+GRLD+
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  208  AWARWSRPWTIVAWAFLGVGITLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHS  267
            A +R +RPWT+ AW FL +GI LGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  268  LAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLTSVHAFAADPSRgifilffllfv  327
            +AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL SVHAFA+DP+RG+FIL F+++V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  328  vggsltlfALRAPVVKSQVGFALWSRETlllannlvlvvaaSMILLGTLYPLVLDALTGA  387
             GGSL LFA+R+  V+S+V  ALWSRE+LLL+NN++L+ A  ++LLGTL PLV   L  +
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  388  KLSVGPPYFDAlflplmallmvvmsvgvvvRWKDTPGKWLVSMMTPVLIGSAILAPVAG-  446
             +SVG P+F+++F  LM  + ++++VG +VRW     + +  ++ + ++ + +L+ +   
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  447  FIVDDFDWPTLTAFALAAWVVLGGLRDILDKTRHkgllkglpglgRSYWGMQlahlglav  506
            ++ D +   T  + A+A W+ + ++ + +++  +            SYWGM  AHLGLAV
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTSL------SYWGMVAAHLGLAV  496

Query  507  calgvvlSSNNSAERDLRMAPGESVELGGYQFLFQGAKHFEGPNFISDKGTVVVSRGGRE  566
               G+ +S N S ERD+RM +G+SV + +Y+F F+  +++ GPN+ ++ + + V+R G  
Sbjct  497  TITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEP  556

Query  567  VTTLHPEKRLYTVQQSMMTEAGIDAGFTRDLYVALGEPLENGAWAVRVHIKPYVRWIW  624
             + LH+EKRLY   + +MTEA+ID+G+TRDLY ALGE L+NGAWAVR+  KP+VRWIW
Sbjct  557  EAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

476) join in NC_019902


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  370 bits (1389),  Expect = 2e-103, Method: Compositional matrix adjust.
 Identities = 310/598 (52%), Positives = 434/598 (73%), Gaps = 22/598 (3%)

Query  24   PLIGAARGDVALMAVGRSAAFGQLFFVALA--YAALTWAFVTDDFSLRYVATHSNSLLPT  81
            PL G ARGD  +MA   ++ F+ L+F+ +A  +  L  AFV +DF++ YVA +SN+ LP 
Sbjct  24   PLWGVARGDARMMA--SAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPV  81

Query  82   QYKISGVWGGHEGslllwvlilslwsAAVATFSRSLPREVLARVLGVMGLVAIGFIGFTL  141
             Y++++ WG+HEGSLLLWVL++S W+ AVA FSR +P +++ARVL+VMG+V  GF++F L
Sbjct  82   WYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFIL  141

Query  142  FTSSPFERLLPA-AMEGRDLNPMLQDPGLIFHPPMLYMGYVGFSVafafaiaaliggrlD  200
            FTS+PF R LPA ++EGRDLNP+LQDPGLIFHPP+LYMGYVGFSVAFAFAIAAL++GRLD
Sbjct  142  FTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD  201

Query  201  AAWARWSRPWTAVAWAFLTLGIALGSWWAYYVLGWGGWWFWDPVENASFLPWLMGTALLH  260
            +A +R +RPWT  AW FLTLGI LGS WAYY LGWGGWWFWDPVENASF+PWL GTALLH
Sbjct  202  SAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLH  261

Query  261  SLAVTEKRGGFKNWTVMLAILTFSLVLLGALLVRSGVLTSVHAFAVDPDRGLYLLGFMAV  320
            S+AVTE+R+GFK WT++L+I +FSL LLG++LVRSGVL SVHAFA DP RG+++L+FM +
Sbjct  262  SMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVL  321

Query  321  VVAGSLTLFAWRAGKVGLGGSFGLVSREsalltnnvllavsaaavllgtlYPLFLDAFGL  380
            V +GSL LFA R+ +V    + +L SRES LL NNVLL  +   VLLGTL PL    +GL
Sbjct  322  VTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGL  381

Query  381  GKISVGPPYFEAVflplmlplllllgfgprlrWKQDSPTEQLWRLRW-ILGFSLVFGML-  438
            G ISVG P+F+++F  LM+P+ LLLG GP +RW +D P + +++L W  +  +LV+++L 
Sbjct  382  GSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRN-IRKLLWAAVVTTLVLSVLL  440

Query  439  -WPLAVGSWSLLAGMGTFLGLWIIGSALKDLVERLRRRPGSTQGFGTRVKRLGRSYAGMQ  497
             W L       ++++G  ++ WI   A+ + V+R+           +R  + + SY GM 
Sbjct  441  PWLLEDKI-IAMTAVGMAMACWIAVLAVAEAVQRV-----------SRGTKTSLSYWGMV  488

Query  498  IAHIGVALLVIGVTFVLGYDDERDVRMAVGETVEVGGYAFRLDALEHIDGPNYSAEQATV  557
             AH+G+A+ + G++F   Y  ERDVRM  G++V + +Y F +  + +I GPNY +  A +
Sbjct  489  AAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALI  548

Query  558  AVYRDDGRRLATLRPQMRDYFSQDMPMAHTSLHRGLFRDLYVNMGEPLGGDAWVMRVY  615
            +V R++    A L+++ R Y +  M M++++++ GL RDLY  +GE L+ +AW +R+Y
Sbjct  549  GVTRHGEPE-AVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLY  605

477) PPUBIRD1_1529 in NC_017530


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  369 bits (1388),  Expect = 3e-103, Method: Compositional matrix adjust.
 Identities = 302/538 (57%), Positives = 414/538 (77%), Gaps = 7/538 (1%)

Query  88   YKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQVMLARVLAVMGMISVGFLSFLII  147
            Y+ +A WGAHEGSLLLW L+++GWT+AV+VFSRQ+P  ++ARVLAVMGM+  GFL+F+++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  148  TSNPFQRLLPQVPTDGRDLNPLLQDFGLIVHPPMLYMGYVgfsvafafaiaallggrlDA  207
            TS PF R LP  P +GRDLNPLLQD GLI HPP+LYMGYVGFSVAFAFAIAALL+GRLD+
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  208  AWARWSRPWTIVAWAFLGVGITLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHS  267
            A +R +RPWT+ AW FL +GI LGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  268  LAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLTSVHAFAADPSRgifilffllfv  327
            +AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL SVHAFA+DP+RG+FIL F+++V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  328  vggsltlfALRAPVVKSQVGFALWSRETlllannlvlvvaaSMILLGTLYPLVLDALTGA  387
             GGSL LFA+R+  V+S+V  ALWSRE+LLL+NN++L+ A  ++LLGTL PLV   L  +
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  388  KLSVGPPYFDAlflplmallmvvlsvgvvvRWKDTPGKWLASMMTPVLIGSAILAPVAG-  446
             +SVG P+F+++F  LM  + ++L+VG +VRW     + +  ++ + ++ + +L+ +   
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  447  FIVDDFDWPTLTAFALAAWVVLGGLRDILDKTRHKGLVKGLPGLGRSYWGMQlahlglav  506
            ++ D +   T  + A+A W+ + ++ + +++   +G   +L     SYWGM  AHLGLAV
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-RGTKTSL-----SYWGMVAAHLGLAV  496

Query  507  calgvvlSSNNSAERDLRMAPGESVELGGYHFLFQGAKHFEGPNFISDKGTIVVSRDGRE  566
               G+ +S N S ERD+RM +G+SV + +Y+F F+  +++ GPN+ ++ + I V+R+G  
Sbjct  497  TITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEP  556

Query  567  VTTLYPEKRLYTVQQSMMTEAGIDAGFTRDLYVALGEPLENGAWAVRVHIKPYVRWIW  624
             + L +EKRLY   + +MTEA+ID+G+TRDLY ALGE L+NGAWAVR+  KP+VRWIW
Sbjct  557  EAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

478) ccmF in NC_021505


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  369 bits (1388),  Expect = 3e-103, Method: Compositional matrix adjust.
 Identities = 299/538 (56%), Positives = 412/538 (77%), Gaps = 7/538 (1%)

Query  88   YKFSAVWGAHEGSLLLWAFILGGWTFAVSVFSRQLPQVMLARVLAVMGMISVGFLSFLII  147
            Y+ +A WGAHEGSLLLW ++++GWT+AV+VFSRQ+P  ++ARVLAVMGM+  GFL+F+++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  148  TSNPFQRLLPQVPTDGRDLNPLLQDFGLIVHPPMLYMGYVgfsvafafaiaallggrlDA  207
            TS PF R LP  P +GRDLNPLLQD GLI HPP+LYMGYVGFSVAFAFAIAALL+GRLD+
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  208  AWARWSRPWTIVAWAFLGVGITLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHS  267
            A +R +RPWT+ AW FL +GI LGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  268  LAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLTSVHAFAADPSRgifilffllfv  327
            +AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL SVHAFA+DP+RG+FIL F+++V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  328  vggsltlfALRAPVVKSQVGFALWSRETlllannlvlvvaaSMILLGTLYPLVLDALTGA  387
             GGSL LFA+R+  V+S+V  ALWSRE+LLL+NN++L+ A  ++LLGTL PLV   L  +
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  388  KLSVGPPYFDAlflplmallmvvmsvgvlvRWKDTPGKWLVSMITPVLIGSAILAPVAG-  446
             +SVG P+F+++F  LM  + ++++VG LVRW     + +  ++ + ++ + +L+ +   
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  447  FIVDDFDWPTLTAFALAAWVVLGGLRDILDKTRHkgllkglpglgRSYWGMQlahlglav  506
            ++ D +   T  + A+A W+ + ++ + +++  +            SYWGM  AHLGLAV
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTSL------SYWGMVAAHLGLAV  496

Query  507  calgvvlSSNNSAERDLRMAPGESVELGGYHFLFQGAKHFEGPNFISDKGTVVVSRDGRE  566
               G+ +S N S ERD+RM +G+SV + +Y+F F+  +++ GPN+ ++ + + V+R+G  
Sbjct  497  TITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEP  556

Query  567  VTTLHPEKRLYTVQQSMMTEAGIDAGFTRDLYVALGEPLENGAWAVRVHIKPYVRWIW  624
             + LH+EKRLY   + +MTEA+ID+G+TRDLY ALGE L+NGAWAVR+  KP+VRWIW
Sbjct  557  EAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

479) ccmF in NC_008027


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  369 bits (1387),  Expect = 4e-103, Method: Compositional matrix adjust.
 Identities = 308/538 (58%), Positives = 414/538 (77%), Gaps = 7/538 (1%)

Query  88   YKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQVMLARVLAVMGMISVGFLSFLII  147
            Y+ +A WGAHEGSLLLW L+++GWT+AV+VFSRQ+P  ++ARVLAVMGM+  GFL+F+++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  148  TSNPFQRLLPQVPGDGRDLNPLLQDFGLIVHPPMLYMGYVgfsvafafaiaallggrlDA  207
            TS PF R LP  P +GRDLNPLLQD GLI HPP+LYMGYVGFSVAFAFAIAALL+GRLD+
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  208  AWARWSRPWTIVAWAFLGVGITLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHS  267
            A +R +RPWT+ AW FL +GI LGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  268  LAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLTSVHAFAADPSRgifilffllfv  327
            +AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL SVHAFA+DP+RG+FIL F+++V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  328  vggsltlfALRAPVVKSQVGFALWSRETlllannlvlvvaaSTILLGTLYPLVLDALTGA  387
             GGSL LFA+R+  V+S+V  ALWSRE+LLL+NN++L+ A   +LLGTL PLV   L  +
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  388  KLSVGPPYFNalflplmallmlvlgvgvvvRWKDTPGKWLASMMTPVLVGSAVLAPVAGL  447
             +SVG P+FN++F  LM  + L+LGVG +VRW     + +  ++ + +V + VL+ +   
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  448  IVDDFDWPILSV-FALAAWVVFSGVRDILDKTRHKGLLKGLAGLNRSYWGMhlahlglav  506
            +++D   ++ +V  A+A W+   +V + +++   +G   +L     SYWGM  AHLGLAV
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-RGTKTSL-----SYWGMVAAHLGLAV  496

Query  507  calgvvlSSNNSAERDLRMAPGETVELGGYHFLFEGAKHFEGPNFISDKGTVRVLRDGRE  566
               G+ +S N S ERD+RM +G++V + +Y+F F   +++ GPN+ ++ + + V R+G  
Sbjct  497  TITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEP  556

Query  567  VTVLHPEKRLYTVQQSMMTEAGIDAGFTRDLYVALGEPLENGAWAVRVHIKPYVRWIW  624
             +VLH+EKRLY   + +MTEA+ID+G+TRDLY ALGE L+NGAWAVR+  KP+VRWIW
Sbjct  557  EAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

480) cycK in NC_018220


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  368 bits (1383),  Expect = 7e-103, Method: Compositional matrix adjust.
 Identities = 302/538 (57%), Positives = 413/538 (77%), Gaps = 7/538 (1%)

Query  88   YKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQVMLARVLAVMGMISVGFLSFLII  147
            Y+ +A WGAHEGSLLLW L+++GWT+AV+VFSRQ+P  ++ARVLAVMGM+  GFL+F+++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  148  TSNPFQRLLPQVPTDGRDLNPLLQDFGLIVHPPMLYMGYVgfsvafafaiaallggrlDA  207
            TS PF R LP  P +GRDLNPLLQD GLI HPP+LYMGYVGFSVAFAFAIAALL+GRLD+
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  208  AWARWSRPWTIVAWAFLGVGITLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHS  267
            A +R +RPWT+ AW FL +GI LGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  268  LAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLTSVHAFAADPSRgifilffllfv  327
            +AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL SVHAFA+DP+RG+FIL F+++V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  328  vggsltlfALRAPVVKSQVGFALWSRETlllannlvlvvaaSMILLGTLYPLVLDALTGA  387
             GGSL LFA+R+  V+S+V  ALWSRE+LLL+NN++L+ A  ++LLGTL PLV   L  +
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  388  KLSVGPPYFDAlflplmallmvvlsvgvvvRWKDTPGKWLVSMMTPVLIGSAILAPVAG-  446
             +SVG P+F+++F  LM  + ++L+VG +VRW     + +  ++ + ++ + +L+ +   
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  447  FIVDDFDWPTLTAFALAAWVVLGGLRDIFDKTRHKGLVKGLPGLGRSYWGMQlahlglav  506
            ++ D +   T  + A+A W+ + ++ +  ++   +G   +L     SYWGM  AHLGLAV
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-RGTKTSL-----SYWGMVAAHLGLAV  496

Query  507  calgvvlSSNNSAERDLRMAPGESVELGGYHFLFQGAKHFEGPNFISDKGTIVVSRDGRE  566
               G+ +S N S ERD+RM +G+SV + +Y+F F+  +++ GPN+ ++ + I V+R+G  
Sbjct  497  TITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEP  556

Query  567  VTTLYPEKRLYTVQQSMMTEAGIDAGFTRDLYVALGEPLENGAWAVRVHIKPYVRWIW  624
             + L +EKRLY   + +MTEA+ID+G+TRDLY ALGE L+NGAWAVR+  KP+VRWIW
Sbjct  557  EAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

481) ccmF in NC_002947


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  368 bits (1382),  Expect = 7e-103, Method: Compositional matrix adjust.
 Identities = 302/538 (57%), Positives = 413/538 (77%), Gaps = 7/538 (1%)

Query  88   YKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQVMLARVLAVMGMISVGFLSFLII  147
            Y+ +A WGAHEGSLLLW L+++GWT+AV+VFSRQ+P  ++ARVLAVMGM+  GFL+F+++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  148  TSNPFQRLLPQVPTDGRDLNPLLQDFGLIVHPPMLYMGYVgfsvafafaiaallggrlDA  207
            TS PF R LP  P +GRDLNPLLQD GLI HPP+LYMGYVGFSVAFAFAIAALL+GRLD+
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  208  AWARWSRPWTIVAWAFLGVGITLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHS  267
            A +R +RPWT+ AW FL +GI LGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  268  LAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLTSVHAFAADPSRgifilffllfv  327
            +AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL SVHAFA+DP+RG+FIL F+++V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  328  vggsltlfALRAPVVKSQVGFALWSRETlllannlvlvvaaSMILLGTLYPLVLDALTGA  387
             GGSL LFA+R+  V+S+V  ALWSRE+LLL+NN++L+ A  ++LLGTL PLV   L  +
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  388  KLSVGPPYFDAlflplmallmvvlsvgvvvRWKDTPGKWLVSMMTPVLIGSAILAPVAG-  446
             +SVG P+F+++F  LM  + ++L+VG +VRW     + +  ++ + ++ + +L+ +   
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  447  FIVDDFDWPTLTAFALAAWVVLGGLRDIFDKTRHKGLVKGLPGLGRSYWGMQlahlglav  506
            ++ D +   T  + A+A W+ + ++ +  ++   +G   +L     SYWGM  AHLGLAV
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-RGTKTSL-----SYWGMVAAHLGLAV  496

Query  507  calgvvlSSNNSAERDLRMAPGESVELGGYHFLFQGAKHFEGPNFISDKGTIVVSREGRE  566
               G+ +S N S ERD+RM +G+SV + +Y+F F+  +++ GPN+ ++ + I V+R+G  
Sbjct  497  TITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEP  556

Query  567  VTTLYPEKRLYTVQQSMMTEAGIDAGFTRDLYVALGEPLENGAWAVRVHIKPYVRWIW  624
             + L +EKRLY   + +MTEA+ID+G+TRDLY ALGE L+NGAWAVR+  KP+VRWIW
Sbjct  557  EAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

482) YSA_08181 in NC_017986


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  368 bits (1383),  Expect = 7e-103, Method: Compositional matrix adjust.
 Identities = 301/538 (56%), Positives = 413/538 (77%), Gaps = 7/538 (1%)

Query  74   YKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQVMLARVLAVMGMISVGFLSFLII  133
            Y+ +A WGAHEGSLLLW L+++GWT+AV+VFSRQ+P  ++ARVLAVMGM+  GFL+F+++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  134  TSNPFQRLLPQVPTDGRDLNPLLQDFGLIVHPPMLYMGYVgfsvafafaiaallggrlDA  193
            TS PF R LP  P +GRDLNPLLQD GLI HPP+LYMGYVGFSVAFAFAIAALL+GRLD+
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  194  AWARWSRPWTIVAWAFLGVGITLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHS  253
            A +R +RPWT+ AW FL +GI LGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  254  LAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLTSVHAFAADPSRgifilffllfv  313
            +AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL SVHAFA+DP+RG+FIL F+++V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  314  vggsltlfALRAPVVKSQVGFALWSRETlllannlvlvvaaSMILLGTLYPLVLDALTGA  373
             GGSL LFA+R+  V+S+V  ALWSRE+LLL+NN++L+ A  ++LLGTL PLV   L  +
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  374  KLSVGPPYFDAlflplmallmvvlsvgvvvRWKDTPGKWLVSMMTPVLIGSAILAPVAG-  432
             +SVG P+F+++F  LM  + ++L+VG +VRW     + +  ++ + ++ + +L+ +   
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  433  FIVDDFDWPTLTAFALAAWVVLGGLRDIFDKTRHKGLVKGLPGLGRSYWGMQlahlglav  492
            ++ D +   T  + A+A W+ + ++ +  ++   +G   +L     SYWGM  AHLGLAV
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-RGTKTSL-----SYWGMVAAHLGLAV  496

Query  493  calgvvlSSNNSAERDLRMAPGESVELGGYHFLFQGAKHFEGPNFISDKGTIVISRDGRE  552
               G+ +S N S ERD+RM +G+SV + +Y+F F+  +++ GPN+ ++ + I ++R+G  
Sbjct  497  TITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEP  556

Query  553  VTTLYPEKRLYTVQQSMMTEAGIDAGFTRDLYVALGEPLENGAWAVRIHIKPYVRWIW  610
             + L +EKRLY   + +MTEA+ID+G+TRDLY ALGE L+NGAWAVR+  KP+VRWIW
Sbjct  557  EAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

483) Pput_1545 in NC_009512


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  368 bits (1383),  Expect = 7e-103, Method: Compositional matrix adjust.
 Identities = 301/538 (56%), Positives = 413/538 (77%), Gaps = 7/538 (1%)

Query  88   YKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQVMLARVLAVMGMISVGFLSFLII  147
            Y+ +A WGAHEGSLLLW L+++GWT+AV+VFSRQ+P  ++ARVLAVMGM+  GFL+F+++
Sbjct  83   YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILF  142

Query  148  TSNPFQRLLPQVPTDGRDLNPLLQDFGLIVHPPMLYMGYVgfsvafafaiaallggrlDA  207
            TS PF R LP  P +GRDLNPLLQD GLI HPP+LYMGYVGFSVAFAFAIAALL+GRLD+
Sbjct  143  TSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDS  202

Query  208  AWARWSRPWTIVAWAFLGVGITLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHS  267
            A +R +RPWT+ AW FL +GI LGS WAYYELGWGGWWFWDPVENASFMPWL GTAL+HS
Sbjct  203  AFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  262

Query  268  LAVTEKRGVFKSWTVllaiaafslsllGTFLVRSGVLTSVHAFAADPSRgifilffllfv  327
            +AVTE+R+ FK+WT+LL+I AFSL LLGTFLVRSGVL SVHAFA+DP+RG+FIL F+++V
Sbjct  263  MAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLV  322

Query  328  vggsltlfALRAPVVKSQVGFALWSRETlllannlvlvvaaSMILLGTLYPLVLDALTGA  387
             GGSL LFA+R+  V+S+V  ALWSRE+LLL+NN++L+ A  ++LLGTL PLV   L  +
Sbjct  323  TGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLG  382

Query  388  KLSVGPPYFDAlflplmallmvvlsvgvvvRWKDTPGKWLVSMMTPVLIGSAILAPVAG-  446
             +SVG P+F+++F  LM  + ++L+VG +VRW     + +  ++ + ++ + +L+ +   
Sbjct  383  SISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPW  442

Query  447  FIVDDFDWPTLTAFALAAWVVLGGLRDIFDKTRHKGLVKGLPGLGRSYWGMQlahlglav  506
            ++ D +   T  + A+A W+ + ++ +  ++   +G   +L     SYWGM  AHLGLAV
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-RGTKTSL-----SYWGMVAAHLGLAV  496

Query  507  calgvvlSSNNSAERDLRMAPGESVELGGYHFLFQGAKHFEGPNFISDKGTIVISRDGRE  566
               G+ +S N S ERD+RM +G+SV + +Y+F F+  +++ GPN+ ++ + I ++R+G  
Sbjct  497  TITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEP  556

Query  567  VTTLYPEKRLYTVQQSMMTEAGIDAGFTRDLYVALGEPLENGAWAVRIHIKPYVRWIW  624
             + L +EKRLY   + +MTEA+ID+G+TRDLY ALGE L+NGAWAVR+  KP+VRWIW
Sbjct  557  EAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

484) cycK in NC_003919


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  367 bits (1378),  Expect = 1e-102, Method: Compositional matrix adjust.
 Identities = 329/602 (55%), Positives = 435/602 (73%), Gaps = 15/602 (2%)

Query  50   IASAFAVLTHAFLVQDFSVRYVAENSNSLLPVMYRYSAVWGAHEGSlllwtlvlglwtgA  109
            +A+AF VL HAF+V+DF+V YVA NSN+ LPV YR +A WGAHEGSLLLW L+++ WT A
Sbjct  50   VAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLA  109

Query  110  VAIWSRQLPAHVIARVLGVMALVSIGFLAFLLFTSNPFARLFPV-PLEGGDLNPLLQDPG  168
            VA+ SRQ+PA+++ARVL+VM++V  GFLAF+LFTS PFAR +P  P+EG DLNPLLQDPG
Sbjct  110  VAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPG  169

Query  169  LIVHPPMLYCGYVGFAVPFAFAIAALLEGRMDACWLRWTRPWTNVAWSMLTVGIALGSWW  228
            LI HPP+LY GYVGF+V+FAFAIAALL GR+D+   R +RPWT  AW  LT+GI LGS W
Sbjct  170  LIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAW  229

Query  229  AYYELGWGGWWFWDPVENASFMPWLVGTALLHSQAVTEKRGSFASWTlllaiaafalsll  288
            AYYELGWGGWWFWDPVENASFMPWL GTALLHS AVTE+R++F +WTLLL+I AF+L LL
Sbjct  230  AYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLL  289

Query  289  GTFLVRSGVLTSVHSFAADPSRGLFILVFLLAVVGGSlllyalrapllSVADDPRRAFAG  348
            GTFLVRSGVL SVH+FA+DP+RG+FIL F++ V GGS         L++V ++  R+   
Sbjct  290  GTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGS-------LLLFAVRGHRVRSRVN  342

Query  349  S---SRETllllnnlllTCACAMVLLGTLYPLLADALGLGKLSVGPPYFGTlfvvlmapl  405
            +   SRE+LLL NN+LL  A  +VLLGTL PL+   LGLG +SVG P+F T+F  LM P+
Sbjct  343  NALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPF  402

Query  406  vallpfGPLTRWQREQASRpvallapwaalalaagvlawfaaPQGQL-KAAFGVAGAAWV  464
              LL  GPL RW R+++     LL +    +L  +VL      +  +  +A G+A A W+
Sbjct  403  ALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI  462

Query  465  -LLGTARFLWTRRAAKGRKFTAEMLGMVLAHLGVAVFLSGAMLVEGLSLQREVALAPGQQ  523
             +L+ A  +  +R ++G K +    GMV AHLG+AV ++G  + +  S++R+V + +G+ 
Sbjct  463  AVLAVAEAV--QRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDS  520

Query  524  VQIGRYALHFDGLEELRGPNYVSDRANLQVFKDDAPAGMLHAEKRRYASGGQTLTEAAIR  583
            V I  Y + F  + ++ GPNY ++ A + V +++ P ++LHAEKR Y ++   +TEAAI 
Sbjct  521  VTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAID  580

Query  584  PGPFGDLYVALGEPLGNQAWAVRVHLKPFVRWIWlgallmalgglvtaaDRRFRRSPEIQ  643
             G   DLY ALGE L+N AWAVR+  KPFVRWIW G+LLMALGGL+  AD R+RR   + 
Sbjct  581  GGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLP  640

Query  644  DG  645
            ++
Sbjct  641  EA  642

485) XAC29_11800 in NC_020800


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  367 bits (1378),  Expect = 1e-102, Method: Compositional matrix adjust.
 Identities = 329/602 (55%), Positives = 435/602 (73%), Gaps = 15/602 (2%)

Query  50   IASAFAVLTHAFLVQDFSVRYVAENSNSLLPVMYRYSAVWGAHEGSlllwtlvlglwtgA  109
            +A+AF VL HAF+V+DF+V YVA NSN+ LPV YR +A WGAHEGSLLLW L+++ WT A
Sbjct  50   VAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLA  109

Query  110  VAIWSRQLPAHVIARVLGVMALVSIGFLAFLLFTSNPFARLFPV-PLEGGDLNPLLQDPG  168
            VA+ SRQ+PA+++ARVL+VM++V  GFLAF+LFTS PFAR +P  P+EG DLNPLLQDPG
Sbjct  110  VAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPG  169

Query  169  LIVHPPMLYCGYVGFAVPFAFAIAALLEGRMDACWLRWTRPWTNVAWSMLTVGIALGSWW  228
            LI HPP+LY GYVGF+V+FAFAIAALL GR+D+   R +RPWT  AW  LT+GI LGS W
Sbjct  170  LIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAW  229

Query  229  AYYELGWGGWWFWDPVENASFMPWLVGTALLHSQAVTEKRGSFASWTlllaiaafalsll  288
            AYYELGWGGWWFWDPVENASFMPWL GTALLHS AVTE+R++F +WTLLL+I AF+L LL
Sbjct  230  AYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLL  289

Query  289  GTFLVRSGVLTSVHSFAADPSRGLFILVFLLAVVGGSlllyalrapllSVADDPRRAFAG  348
            GTFLVRSGVL SVH+FA+DP+RG+FIL F++ V GGS         L++V ++  R+   
Sbjct  290  GTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGS-------LLLFAVRGHRVRSRVN  342

Query  349  S---SRETllllnnlllTCACAMVLLGTLYPLLADALGLGKLSVGPPYFGTlfvvlmapl  405
            +   SRE+LLL NN+LL  A  +VLLGTL PL+   LGLG +SVG P+F T+F  LM P+
Sbjct  343  NALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPF  402

Query  406  vallpfGPLTRWQREQASRpvallapwaalalaagvlawfaaPQGQL-KAAFGVAGAAWV  464
              LL  GPL RW R+++     LL +    +L  +VL      +  +  +A G+A A W+
Sbjct  403  ALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI  462

Query  465  -LLGTARFLWTRRAAKGRKFTAEMLGMVLAHLGVAVFLSGAMLVEGLSLQREVALAPGQQ  523
             +L+ A  +  +R ++G K +    GMV AHLG+AV ++G  + +  S++R+V + +G+ 
Sbjct  463  AVLAVAEAV--QRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDS  520

Query  524  VQIGRYALHFDGLEELRGPNYVSDRANLQVFKDDAPAGMLHAEKRRYASGGQTLTEAAIR  583
            V I  Y + F  + ++ GPNY ++ A + V +++ P ++LHAEKR Y ++   +TEAAI 
Sbjct  521  VTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAID  580

Query  584  PGPFGDLYVALGEPLGNQAWAVRVHLKPFVRWIWlgallmalgglvtaaDRRFRRSPEIQ  643
             G   DLY ALGE L+N AWAVR+  KPFVRWIW G+LLMALGGL+  AD R+RR   + 
Sbjct  581  GGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLP  640

Query  644  DG  645
            ++
Sbjct  641  EA  642

486) ccmF in NC_020815


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  367 bits (1381),  Expect = 9e-103, Method: Compositional matrix adjust.
 Identities = 329/602 (55%), Positives = 435/602 (73%), Gaps = 15/602 (2%)

Query  81   IASAFAVLTHAFLVQDFSVRYVAENSNSLLPVMYRYSAVWGAHEGSlllwtlvlglwtgA  140
            +A+AF VL HAF+V+DF+V YVA NSN+ LPV YR +A WGAHEGSLLLW L+++ WT A
Sbjct  50   VAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLA  109

Query  141  VAIWSRQLPAHVIARVLGVMALVSIGFLAFLLFTSNPFARLFPV-PLEGGDLNPLLQDPG  199
            VA+ SRQ+PA+++ARVL+VM++V  GFLAF+LFTS PFAR +P  P+EG DLNPLLQDPG
Sbjct  110  VAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPG  169

Query  200  LIVHPPMLYCGYVGFAVPFAFAIAALLEGRMDACWLRWTRPWTNVAWSMLTVGIALGSWW  259
            LI HPP+LY GYVGF+V+FAFAIAALL GR+D+   R +RPWT  AW  LT+GI LGS W
Sbjct  170  LIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAW  229

Query  260  AYYELGWGGWWFWDPVENASFMPWLVGTALLHSQAVTEKRGSFASWTlllaiaafalsll  319
            AYYELGWGGWWFWDPVENASFMPWL GTALLHS AVTE+R++F +WTLLL+I AF+L LL
Sbjct  230  AYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLL  289

Query  320  GTFLVRSGVLTSVHSFAADPSRGLFILVFLLAVVGGSlllyalrapllSVADDPRRAFAG  379
            GTFLVRSGVL SVH+FA+DP+RG+FIL F++ V GGS         L++V ++  R+   
Sbjct  290  GTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGS-------LLLFAVRGHRVRSRVN  342

Query  380  S---SRETllllnnlllTCACAMVLLGTLYPLLADALGLGKLSVGPPYFGTlfvvlmapl  436
            +   SRE+LLL NN+LL  A  +VLLGTL PL+   LGLG +SVG P+F T+F  LM P+
Sbjct  343  NALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPF  402

Query  437  vallpfGPLTRWQREQASRpvallapwaalalaagvlawfaaPQGQL-KAAFGVAGAAWV  495
              LL  GPL RW R+++     LL +    +L  +VL      +  +  +A G+A A W+
Sbjct  403  ALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI  462

Query  496  -LLGTARFLWTRRAAKGRKFTAEMLGMVLAHLGVAVFLSGAMLVEGLSLQREVALAPGQQ  554
             +L+ A  +  +R ++G K +    GMV AHLG+AV ++G  + +  S++R+V + +G+ 
Sbjct  463  AVLAVAEAV--QRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDS  520

Query  555  VQIGRYALHFDGLEELRGPNYVSDRANLQVFKDDAPAGMLHAEKRRYASGGQTLTEAAIR  614
            V I  Y + F  + ++ GPNY ++ A + V +++ P ++LHAEKR Y ++   +TEAAI 
Sbjct  521  VTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAID  580

Query  615  PGPFGDLYVALGEPLGNQAWAVRVHLKPFVRWIWlgallmalgglvtaaDRRFRRSPEIQ  674
             G   DLY ALGE L+N AWAVR+  KPFVRWIW G+LLMALGGL+  AD R+RR   + 
Sbjct  581  GGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLP  640

Query  675  DG  676
            ++
Sbjct  641  EA  642

487) Fraau_1053 in NC_017033


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  365 bits (1373),  Expect = 4e-102, Method: Compositional matrix adjust.
 Identities = 296/555 (54%), Positives = 407/555 (74%), Gaps = 11/555 (1%)

Query  64   HDFSVRYVAVNSNLALPWYYRIAATWGNHEGSVLLWILIFNVWTVALATFSRHLPQVFLA  123
            +DF+V YVA NSN  LP  YR+AATWG HEGS+LLW+L+ + WT+A+A FSR++P  ++A
Sbjct  64   NDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVA  123

Query  124  RVLAVMGLVGTGFLMFSIFTSNPFLRLIP-MPADGDDLSPLLQDPGMTFHPPMLYMGYVG  182
            RVLAVMG+V +GFL F +FTS PF R +P  P +G DL+PLLQDPG+ FHPP+LYMGYVG
Sbjct  124  RVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVG  183

Query  183  FSVAFAFSIAALLGGELEQAWVRWSRPWTNAAWGFLTVGIVAGSWWSYSVLGWGGWWAWD  242
            FSVAFAF+IAALL+G L+ A  R +RPWT AAW FLT+GIV GS W+Y  LGWGGWW WD
Sbjct  184  FSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWD  243

Query  243  PVENASFMPWLAGAALIHAQAVTEKRGSLSAWTlllaifafslsllGTFLVRSGILTSVH  302
            PVENASFMPWLAG+AL+H+ AVTE+R+++ AWTLLL+I AFSL LLGTFLVRSG+L SVH
Sbjct  244  PVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVH  303

Query  303  AFATDPRRGVFILCFLIAVIGGSLLLYAMRAPTVVRGKGFAMISRESAILVSNLLLTVAA  362
            AFA+DP RG+FIL F++ V GGSLLL+A+R+  V      A+ SRES +L +N+LL  A 
Sbjct  304  AFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAM  363

Query  363  GMVLLGTLFPLIGDALHLGKTSVGSPYFGflftvlmtplvlllpFGPYLRWGQSEPGalv  422
             +VLLGTL+PL+   L LG  SVG P+F  +FT LM P+ LLL  GP +RWG+  P  + 
Sbjct  364  LVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIR  423

Query  423  aiaaragiaavvsaviaTFFVQGHLKAI--FGVAGAIWVMVGTLLYVFKRVREMPAGRRF  480
             +   A ++++V +V+   ++++ + A+   G+A A W+   ++L V   V+ ++ G + 
Sbjct  424  KLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI---AVLAVAEAVQRVSRGTKT  480

Query  481  TAEMGGMLLAHfgvgvfvagvMLSESLSMFSDVRMAPGDTQTLGAYQFHFDGLQETKGPN  540
            +    GM+ AH+G++V ++G+ +S++ S+  DVRM +GD+ T+  Y+F F  +++  GPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  541  WHADQAAITVSKSGSVVAVLHPQKRVY-TREEVQTESAISAGVFRDIYVTLGEPMDPKQP  599
             +++ A I V++ G   AVLH++KR+Y T   V TE+AI +G+ RD+Y +LGE +D    
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELD----  596

Query  600  NGAWAFRLYDKPFIR  614
            NGAWA RLY KPF+R
Sbjct  597  NGAWAVRLYYKPFVR  611

488) ccmF2 in NC_007508


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  362 bits (1361),  Expect = 4e-101, Method: Compositional matrix adjust.
 Identities = 326/602 (55%), Positives = 434/602 (73%), Gaps = 15/602 (2%)

Query  50   IASAFAVLTHAFLVQDFSVRYVAENSNSLLPVMYRYSAVWGAHEGSlllwtlvlalwtGA  109
            +A+AF VL HAF+V+DF+V YVA NSN+ LPV YR +A WGAHEGSLLLW L+++ WT A
Sbjct  50   VAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLA  109

Query  110  VAIWSRQLPAHVIARVLGVMALVSIGFLAFLLFTSNPFARLFPV-PPEGGDLNPLLQDPG  168
            VA+ SRQ+PA+++ARVL+VM++V  GFLAF+LFTS PFAR +P  P EG DLNPLLQDPG
Sbjct  110  VAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPG  169

Query  169  LIVHPPMLYCGYVGFAVPFAFAIAALLEGRMDARWLRWTRPWTNVAWSMLTVGIALGSWW  228
            LI HPP+LY GYVGF+V+FAFAIAALL GR+D+   R +RPWT  AW  LT+GI LGS W
Sbjct  170  LIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAW  229

Query  229  AYYELGWGGWWFWDPVENASFMPWLVGTALLHSQAVTEKRGSFASWTlllaiaafalsll  288
            AYYELGWGGWWFWDPVENASFMPWL GTALLHS AVTE+R++F +WTLLL+I AF+L LL
Sbjct  230  AYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLL  289

Query  289  GTFLVRSGVLTSVHSFAADPSRGLFILVFLLAVVGGSlllyalrapllSVADDPRRAFAG  348
            GTFLVRSGVL SVH+FA+DP+RG+FIL F++ V GGS         L++V ++  R+   
Sbjct  290  GTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGS-------LLLFAVRGHRVRSRVN  342

Query  349  S---SRETllllnnlllTCACAMVLLGTLYPLLADALGLGKLSVGPPYFGTlfvvlmapl  405
            +   SRE+LLL NN+LL  A  +VLLGTL PL+   LGLG +SVG P+F T+F  LM P+
Sbjct  343  NALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPF  402

Query  406  vallpfGPLTRWQREQASRplamlapwaglalaagvlawlvaPQGQL-KAAFGVAGAAWV  464
              LL  GPL RW R+++     +L +    +L  +VL   +  +  +  +A G+A A W+
Sbjct  403  ALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI  462

Query  465  -LLGTARFLWTRRAAKGRRFTAEMLGMVLAHLGVAVFLSGALLVEGLSLQREVALAPGQQ  523
             +L+ A  +  +R ++G + +    GMV AHLG+AV ++G  + +  S++R+V + +G+ 
Sbjct  463  AVLAVAEAV--QRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDS  520

Query  524  VQIGRYALHFDGLEELRGPNYVADRANLQVLKDDAPVGALQAEKRRYASGGQTLTEAAIR  583
            V I  Y + F  + ++ GPNY ++ A + V +++ P + L+AEKR Y ++   +TEAAI 
Sbjct  521  VTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAID  580

Query  584  PGPFGDLYVALGEPLGNQAWAVRVHLKPFVRWIWlgallmalgglvtaaDRRFRRSPEIQ  643
             G   DLY ALGE L+N AWAVR+  KPFVRWIW G+LLMALGGL+  AD R+RR   + 
Sbjct  581  GGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLP  640

Query  644  DG  645
            ++
Sbjct  641  EA  642

489) ccmF2 in NC_016010


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  360 bits (1354),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 324/602 (54%), Positives = 434/602 (73%), Gaps = 15/602 (2%)

Query  40   IASAFAVLTHAFLVQDFSVRYVAENSNSLLPVMYRYSAVWGAHEGSlllwtlvlalwtGA  99
            +A+AF VL HAF+V+DF+V YVA NSN+ LPV YR +A WGAHEGSLLLW L+++ WT A
Sbjct  50   VAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLA  109

Query  100  VAIWSRQLPAHVIARVLGVMALVSIGFLAFLLFTSNPFGRLFPV-PPEGGDLNPLLQDPG  158
            VA+ SRQ+PA+++ARVL+VM++V  GFLAF+LFTS PF+R +P  P EG DLNPLLQDPG
Sbjct  110  VAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPG  169

Query  159  LIVHPPMLYCGYVGFAVPFAFAIAALLEGRMDARWLRWTRPWTNVAWSMLTVGIALGSWW  218
            LI HPP+LY GYVGF+V+FAFAIAALL GR+D+   R +RPWT  AW  LT+GI LGS W
Sbjct  170  LIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAW  229

Query  219  AYYELGWGGWWFWDPVENASFMPWLVGTALLHSQAVTEKRGSFASWTlllaiaafalsll  278
            AYYELGWGGWWFWDPVENASFMPWL GTALLHS AVTE+R++F +WTLLL+I AF+L LL
Sbjct  230  AYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLL  289

Query  279  GTFLVRSGVLTSVHSFAADPSRGLFILVFLLAVVGGSlllyalrapllSVADDPRRAFAG  338
            GTFLVRSGVL SVH+FA+DP+RG+FIL F++ V GGS         L++V ++  R+   
Sbjct  290  GTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGS-------LLLFAVRGHRVRSRVN  342

Query  339  S---SRETllllnnlllTCACAMVLLGTLYPLLADALGLGKLSVGPPYFGTlfvvlmapl  395
            +   SRE+LLL NN+LL  A  +VLLGTL PL+   LGLG +SVG P+F T+F  LM P+
Sbjct  343  NALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPF  402

Query  396  vallpfGPLTRWQREQASRplamlapwaglalaagvlawlvaPQGQL-KAAFGVAGAAWV  454
              LL  GPL RW R+++     +L +    +L  +VL   +  +  +  +A G+A A W+
Sbjct  403  ALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI  462

Query  455  -LLGTARFLWTRRAAKGRRFTAEMLGMVLAHLGVAVFLSGALLVEGLSLQREVALAPGQQ  513
             +L+ A  +  +R ++G + +    GMV AHLG+AV ++G  + +  S++R+V + +G+ 
Sbjct  463  AVLAVAEAV--QRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDS  520

Query  514  VQIGRYALHFDGLEELRGPNYVADRANLQVLKDDAPVGALQAEKRRYASGGQTLTEAAIR  573
            V I  Y + F  + ++ GPNY ++ A + V +++ P + L+AEKR Y ++   +TEAAI 
Sbjct  521  VTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAID  580

Query  574  PDPFGDLYVALGEPLGNQAWAVRVHLKPFVRWIWlgallmalgglvtaaDRRFRRSPEIQ  633
             +   DLY ALGE L+N AWAVR+  KPFVRWIW G+LLMALGGL+  AD R+RR   + 
Sbjct  581  GGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLP  640

Query  634  DG  635
            ++
Sbjct  641  EA  642

490) cycK in NC_015717


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  360 bits (1354),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 284/600 (48%), Positives = 413/600 (69%), Gaps = 15/600 (2%)

Query  27   GAAIKDERMMRVAEPAAISQLLLIAVA--FFALMHAYVTSDFSVLNVAENSHSTKPLIYK  84
            G A  D RMM  A ++ ++ LL+I VA  FF L+HA+V +DF+V  VA NS++  P+ Y+
Sbjct  27   GVARGDARMM--ASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYR  84

Query  85   MAGVWGNHEGSMLLWvlilalfgaavalfgNNLPPTLKARVLSVQASIAVAFLLFSLLTS  144
            +A+ WG HEGS+LLWVL+++    AVA+F+ ++P+ + ARVL+V + +  +FL F L+TS
Sbjct  85   VAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTS  144

Query  145  NPFVRLDPA-PSDGNGLNPILQDPALAFHPPFLYTGYVGfsiafsfaiaaLIEGRIDAAW  203
             PF R  PA P +G +LNP+LQDP+L FHPP+LY GYVGFS+AF+FAIAAL+ GR+D+A 
Sbjct  145  GPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAF  204

Query  204  ARWVRPWTLAAWMFLTIGISMGSWWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSAL  263
            +R  RPWTLAAW+FLT+GI +GS WAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  
Sbjct  205  TRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMA  264

Query  264  VMEKREALKIWTVLLAILTFSLSLMGTFIVRSGVLTSVHSFAVDPARGVFILAILVFFTG  323
            V E+R ++K WT+LL+I +FSL L+GTF+VRSGVL SVH+FA DPARG+FILA++V+ TG
Sbjct  265  VTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTG  324

Query  324  GGLALFALRAKDMQAGGLFQPISREGSlvlnnlllvtatatvlvgtlYPMALEGLTGEKI  383
            G+L LFA+R+  +++       SRE+ L+ NN+LL++A   VL+GTL P+    L    I
Sbjct  325  GSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSI  384

Query  384  SVGPPFFNMTFGPLMIPLLIALPFGPMLAWKRGDLLGAMQRLAFAFLAALVTIVAVFAVE  443
            SVG PFFN  F  LM+P+ + L  GP++ W R D    +++L  A      ++V+ + + 
Sbjct  385  SVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR-DRPRNIRKLLWA------AVVTTLVLS  437

Query  444  HRGPWLAPFGIALGVYVMVGAIVEWANRVKLGSAGRDEVMRRASNLPRSAYGTLFAHFGV  503
               PWL   +  +++  +  A+  W     L+ A   + + R+++ + S  G + AH+G+
Sbjct  438  VLLPWLLE-DKIIAMTAVGMAMACWIA--VLAVAEAVQRVSRGTKTSLSYWGMVAAHLGL  494

Query  504  GMLMVGIVATSAYREEHILAMKPGDKVMVDGYEVTFAKVERGRGPNYTEDIADFNVKRNG  563
            ++ + GI  +  Y  E+ + M++GD V +++Y  TF  V    GPNY  ++A + V R+G
Sbjct  495  AVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  564  ETIATLQPAKRLYDAPPQPTTEAGIHAAWRGDLYVVIGDGQPGGGYAVRAYFNPLVRFIW  623
            E  A L++ KRLY+++    TEA+I+++   DLY  +G+    G+ AVR Y++P+VR IW
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

491) ccmF in NC_017384


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  358 bits (1343),  Expect = 9e-100, Method: Compositional matrix adjust.
 Identities = 266/569 (47%), Positives = 396/569 (70%), Gaps = 14/569 (2%)

Query  53   SFGALTWAFVTSDFSLKLAVVNSHTDKPLIYKISGVWGNHEGSMLLWLFILAIFGAAVAW  112
            +F  L  AFV +DF++     NS+T+ P+ Y++++ WG HEGS+LLW+++++    AVA 
Sbjct  53   AFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAV  112

Query  113  FGGDLPERLRARVLAVQASISVAFYAFTLFTSNPFERMVIA-PLNGQDLNPLLQDPGLAY  171
            F+ ++P  + ARVLAV + +  +F AF LFTS PF R + A P++G+DLNPLLQDPGL +
Sbjct  113  FSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIF  172

Query  172  HPPFLYLGYVGFSVAFSFAIAALIEGKVDAAWGRWVRPWTLAAWSFLTVGIALGSWWAYY  231
            HPP+LY+GYVGFSVAF+FAIAAL+ G++D+A  R  RPWTLAAW FLT+GI LGS WAYY
Sbjct  173  HPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYY  232

Query  232  ELGWGGFWFWDPVENASFMPWLIGAALLHSAIVVEKREALKSWTVLLAILAFGFSLLGTF  291
            ELGWGG WFWDPVENASFMPWL G+ALLHS  V E+R ++K+WT+LL+I AF++ LLGTF
Sbjct  233  ELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTF  292

Query  292  IVRSGTLTSVHAFASDPARGSVMLAIMGFYLGGGLTLYAARASAMEAKGVFSLVSRESal  351
            +VRSG L SVHAFASDPARG  +LA+M +  GG+L L+A R+  + ++   +L SRES L
Sbjct  293  LVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLL  352

Query  352  vmnnvllavaafvvlIGTIWPLVTEVIG-RTVSVGPPFFNAAFTPFMIALSIILPLGSVL  410
            + NNVLL  A +VVL+GT+ PLV   +G  ++SVG PFFN+ FT +M++++++L +G+++
Sbjct  353  LGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLV  412

Query  411  AWKRGTLGKALQQMWGaavla-falmalaWVMTGGSTILAPIGVLLGTwvvaasavdvwa  469
             W R+   +  + +W+A V +    + L+W++ +    ++++G+ ++ W+   +  +   
Sbjct  413  RWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQ  472

Query  470  RTGRGDIRGRLSRLTRLPRADWGKAVSHIGFGATILGVALSLSL-VKEDIRVMNIGDTFE  528
            R +RG         T+ + + WG   +H+G++ TI G+A+S +  V  D+R M  GD+  
Sbjct  473  RVSRG---------TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVR-MRAGDSVT  522

Query  529  LGNYTFNLTAVNELQGPNYLTTMADVTISRDGQEVASLHPEKRFYPFAGMPTTEAGISSN  588
            + +Y F +  V ++ GPNY   +A + ++R+G+  A LH+EKR+Y  + M  TEA+I + 
Sbjct  523  IHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGG  582

Query  589  LLRDVYVVLGDPQVGGGYAMRSYIKPFVN  617
            L RD+Y  LG+    G+ A+R Y KPFV 
Sbjct  583  LTRDLYAALGEELDNGAWAVRLYYKPFVR  611

492) D7S_01950 in NC_017846


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  357 bits (1342),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 240/566 (43%), Positives = 389/566 (69%), Gaps = 17/566 (3%)

Query  56   ILAYSFAADDFTLEYVAAHSNSQLPTFFKIAATWGGYEGSMLFWLFSLAVWVVLFALFNR  115
            +L  +F  +DFT+ YVA++SN+QLP  +++AATWG+ EGS+L+W++ ++ W +  A+F+R
Sbjct  56   VLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR  115

Query  116  KNDRTFVAQSLVILGLICFSFAVFIVFFSNPFGRIFPA-PLEGRDLNPMLQDVGLIFHPP  174
            +    +VA+ L ++G++C +F  FI+F S PF+R +PA P+EGRDLNP+LQD GLIFHPP
Sbjct  116  QVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPP  175

Query  175  LLYLGYVGFAVNFAISITALLHQHLERQIAHIMRGWVSVSWLFLTLGIVLGACWAYYELG  234
            LLY+GYVGF+V FA++I+ALL  +L+  ++++ R W   +W+FLTLGIVLG+ WAYYELG
Sbjct  176  LLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELG  235

Query  235  WGGWWFWDPVENASLMPWLLGLALLHSLIVSEKRGIFNYWttlfsllafafsVLGTFIVR  294
            WGGWWFWDPVENAS+MPWL G ALLHS+ V+E+R+ F+ WT L+S+ AF++ +LGTF+VR
Sbjct  236  WGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVR  295

Query  295  SGALTSVHAFAVDSQRGSALLLIFFLLAVGSLGLFAFKANLQQRRVKLTLFSKESAVLFL  354
            SG L SVHAFA D+ RG  +L +  L++ GSL LFA +++  + RV+ +L S+ES +L  
Sbjct  296  SGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGN  355

Query  355  NVLLSIATVSTFLGTFYPMLFQTMNWGSISVGAPYFNSIFLPLLTLILIAMVLSLG--LH  412
            NVLL  A +  +LGT+ P++ + +  GSISVG P+FN++F  L  ++ +A++L++G  ++
Sbjct  356  NVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWL--MVPFALLLGVGPLVR  413

Query  413  WAKADKGVLLKR-------TALLLPSLLIAYFAIRQVMQNDSALQFNLTAYflftlaiwl  465
            W++ D+   +++       T+L+L+ LL     + + +   +A+   ++  +        
Sbjct  414  WGR-DRPRNIRKLLWAAVVTTLVLSVLLP--WLLEDKIIAMTAVGMAMACWIAVLAVAEA  470

Query  466  llatlwQNWRRLNVSHYAMIFAHSGVAIATMGAVMSSYFGSEIGVRLSPQQSQTLGQFDF  525
            +    +    + ++S  +M+ AH G+A++  G   S  ++ E +VR+ + +S T+ ++ F
Sbjct  471  VQRVSRGT--KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRF  528

Query  526  RYVRFSNEIGPNFTAEVADFHVTTNGKPYADLQPERRYYDVRTMTMSEVGLAGGFWGDLY  585
             +    +  GPN+ + VA + VT +G P A L++E+R Y+   M M+E ++ GG+  DLY
Sbjct  529  TFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLY  588

Query  586  IVMGDPLGKGEFTFRLHYKPLIRWLW  611
              +G+ L++G  + RL YKP++RW+W
Sbjct  589  AALGEELDNGAWAVRLYYKPFVRWIW  614

493) PARA_00840 in NC_015964


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  356 bits (1339),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 248/565 (44%), Positives = 391/565 (70%), Gaps = 15/565 (2%)

Query  56   ILAYSFATDDFTLEYVAAHSNSQLPTFFKVAATWGGHEGSILFWLFTLSLWLVAFAFFSR  115
            +L  +F  +DFT+ YVA++SN+QLP  ++VAATWG+HEGS+L+W++ +S W +A A FSR
Sbjct  56   VLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR  115

Query  116  KNDRTFSAQTLSLLGLICLGFAIFILFYSNPFGRAFPA-PSEGRDLNPMLQDIGLIFHPP  174
            +    + A+ L+++G++C GF  FILF S PF+R++PA P EGRDLNP+LQD GLIFHPP
Sbjct  116  QVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPP  175

Query  175  LLYVGYVGFAVNFAMSISALIFNRSTQAIARAMRAWVLVSWLFLTLGIVLGAWWAYYELG  234
            LLY+GYVGF+V FA +I+AL+  R   A++R  R+W L +W+FLTLGIVLG+ WAYYELG
Sbjct  176  LLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELG  235

Query  235  WGGWWFWDPVENASLMPWLLGLALLHSLMVTEKQGMFSYWttlfsllafafsVLGTFIVR  294
            WGGWWFWDPVENAS+MPWL G ALLHS+ VTE+++ F  WT L+S+ AF++ +LGTF+VR
Sbjct  236  WGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVR  295

Query  295  SGALTSVHAFALDSSRGYVLLLIFFLLTVGSLSLFALRTNTNESAVKFPLISKTGAILGL  354
            SG L SVHAFA D++RG  +L +  L+T GSL LFA+R +   S V+ +L S+ + +LG 
Sbjct  296  SGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGN  355

Query  355  NIVLTVATVSTFLGTFYPMLFQAMNWGSISVGAPYFNSIFL-PLLTLVLFAMAGTLCLNW  413
            N++L  A +  +LGT+ P++ + +  GSISVG P+FN++F   ++ + L+   G L + W
Sbjct  356  NVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPL-VRW  414

Query  414  FKADkkrffkrl-lllIPAAVMAYGMIWNALQNDSALRFHFFAYVLLTLAIWVLFVTL--  470
             +   + + K L   ++ + V++  + W  L +D  +     + V +++A W+  +++  
Sbjct  415  GRDRPRNIRKLLWAAVVTTLVLSVLLPW--LLEDKIIA---MTAVGMAMACWIAVLAVAE  469

Query  471  ---WQNW-AKVRLAYFGMILAHCGVAIATMGAVMSSYFGSELGVRLAPQQSQQLGQFEFH  526
               + ++ +K  L+Y GM+ AH G+A++  G   S  ++ E +VR+ + +S  + ++ F 
Sbjct  470  AVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  527  YDRFSNEIGPNFTAEVAFFNVSKQGKPYAEIVPERRYYDVRTMTMSEVGLDAGFWGDLYI  586
            +    +  GPN+ + VA++ V+++G P A + +E+R Y+   M M+E ++D+G+  DLY 
Sbjct  530  FREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYA  589

Query  587  VMGDNLGKGEFTFRLHYKPLIRWLW  611
             +G++L++G  + RL YKP++RW+W
Sbjct  590  ALGEELDNGAWAVRLYYKPFVRWIW  614

494) ccmF in NC_015723


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  354 bits (1328),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 335/594 (57%), Positives = 448/594 (76%), Gaps = 12/594 (2%)

Query  53   SFAALTWSFVSNDFSVRYVAANANSALPLAYRIAAVWGGHEgsmllwtlmlglwslAVSA  112
            +F  L  +FV NDF+V YVA+N+N+ LP+ YR+AA WG+HEGS+LLW L+++ W+LAV+ 
Sbjct  53   AFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAV  112

Query  113  CSRQlplaavarvlavMGAISAGFLAFLLFASNPFVRLLPP-AMEGRDLNPLLQDPGMVF  171
             SRQ+P   VARVLAVMG + AGFLAF+LF+S PF R LP+ ++EGRDLNPLLQDPG++F
Sbjct  113  FSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIF  172

Query  172  HPPLLYMGYVGFSvtfafavaallaGRVDAAWARWSRPWTTVAWAFLTLGIMLGSAWAYY  231
            HPPLLYMGYVGFSV+FAFA+AALL+GR+D+A +R +RPWT  AW FLTLGI+LGSAWAYY
Sbjct  173  HPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYY  232

Query  232  ELGWGGWWFWDPVENASFMPWLAGTALMHSLAVTEKRGALRAWTVLLAIftfslsllgtf  291
            ELGWGGWWFWDPVENASFMPWLAGTAL+HS+AVTE+R++++AWT+LL+I +FSL LLGTF
Sbjct  233  ELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTF  292

Query  292  lVRSGVLTSVHAFAVDPKRGIFIlallglvtglalalyaWRAPRLARRVAFAAVSRESMl  351
            LVRSGVL SVHAFA DP RG+FILA++ LVTG +L L+A R+ R+  RV  A  SRES+L
Sbjct  293  LVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLL  352

Query  352  lannvllavaaatvllgtlYPLLVDVLGLGKISVGPAYFEQVFVplmapagalmgaapla  411
            L+NNVLL  A   VLLGTL PL+   LGLG ISVG ++F+ +F  LM P + L+G +PL 
Sbjct  353  LGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLV  412

Query  412  RWRHGSLPDMARRLRWGAVASAAIGLGLL--LVLRNasalsglglllaaWCVLSAVTSla  469
            RW ++  P   R+L W+AV ++ +   LL  L+  +  A++++G+ +A W  + AV+   
Sbjct  413  RWGRDR-PRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAV  471

Query  470  arlrqqqgrrlaalrqFTPSYWGMLLAHAGVGVFIAGVTLVSGQESLRELPMRAGESVSV  529
             R+ +            + SYWGM+ AH G++V I+G+++       R++ MRAG+SV++
Sbjct  472  QRVSRGTKT--------SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTI  523

Query  530  GGYDFRFAGVTQGGGPNYDALRGTLVAARDGKRVALLHPERRIYRSQDMPTTEAAIDSGV  589
             +Y F F  V +  GPNY +  + +  +R+G   A+LH+E+R+Y +  M  TEAAID+G+
Sbjct  524  HDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGL  583

Query  590  ARDLYVALGENVDGSAWAVRIHVKPFVDWIWAGCVLMALGGLLAVCDKRYRLRR  643
            +RDLY ALGE++D +AWAVR+  KPFV WIWAG +LMALGGLL + D RYR R+
Sbjct  584  TRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

495) ccmF in NC_015730


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  354 bits (1331),  Expect = 8e-99, Method: Compositional matrix adjust.
 Identities = 293/642 (46%), Positives = 443/642 (70%), Gaps = 11/642 (1%)

Query  1    MITELGHFALILAFMVAIVQTVIPLIGAHKRWPSWMAVAEPAANAQFLLTAFSFGALMWA  60
            M+ E GH  L LA+ VA++ +V PL G  +  +  MA A   A   F+  A +F  L+ A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FIVSDFSLHLVTLNSHSAKPMLYKISGTWGNHEGSMLLWVLIVALFGAMAAWFGGNLPPT  120
            F+V+DF++  V+ NS++  P+ Y++++TWG HEGS+LLWVL+++      A F+ ++P+ 
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LKARVLSVQaaigvaffafiifTSNPFTR-LAVPPFDGQDLNPLLQDPGLAFHPPFLYLG  179
            + ARVL+V + +  +F+AFI+FTS PF+R L+  P +G+DLNPLLQDPGL FHPP+LY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGLSMAFSFAVAALIEGRVDAAWGRWVRPWTLAAWVFLTIGIALGSWWAYYELGWGGFW  239
            YVG+S+AF+FA+AAL+ GR+D+A  R  RPWTLAAWVFLT+GI LGS WAYYELGWGG W
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASFMPWLLAAALLHSAIVVEKRESLKSWTILLAILAFGFSLIGTFIVRSGLLT  299
            FWDPVENASFMPWL ++ALLHS  V E+R ++K+WT+LL+I AF++ L+GTF+VRSG+L 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFANDPERGVFILMIMGFFMGGALILFAFRAGAMEARGVFGVVSRESalvannllla  359
            SVHAFA+DP RG+FIL +M +  GG+L+LFA R+  + +R   ++ SRES L++NN+LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  vSCFVVFVGTMWPLVAEMFFDRKLSVGPPFFNMAFSPFMLVLGILLPIGSAMPWKRAHIA  419
             + +VV++GT+ PLV   +    +SVG PFFN  F+ +M+ +++LL +G+ + W R +  
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  RALKPLRYVFVLALAIGG-LAYAMQSGRSLLGPIGLFLAAWIVMGTIIDFIQRAGRGPER  478
               K L+   V +L ++  L+  ++     + ++G+ +A WI + ++ + +QR +RG   
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT--  478

Query  479  WARIWRLPRADWGKMVAHAGVGITMMGVCGIMAWQYE-DIRVAQFGEPYEVGRYTITLDK  537
                 + + + WG + AH G+++T+ G+        E D+R+   G++  +  Y +T+  
Sbjct  479  -----KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRA-GDSVTIHDYRFTFRE  532

Query  538  VSNYEGPNFLSTTGYITLAQDGREIAQLKPEKRIYPVAQMPTTEAAIDYDLIRDVYVVIG  597
            V +  GPN+ +  + I ++++G   A L +EKR+Y  ++M  TEAAID +L RD+Y  +G
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  598  DEQANGGWAVRTYVKPLTNWIWIgsglmalggllslsDRRFR  639
            +E  NG+WAVR Y KP+  WIW G+ LMALGGLL L+D R+R
Sbjct  593  EELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

496) D11S_1984 in NC_013416


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  354 bits (1331),  Expect = 8e-99, Method: Compositional matrix adjust.
 Identities = 244/565 (44%), Positives = 390/565 (70%), Gaps = 15/565 (2%)

Query  56   ILAYSFAADDFTLEYVAAHSNSQLPTFFKIAATWGGHEGSMLFWLFSLSVWVVLFALFNR  115
            +L  +F  +DFT+ YVA++SN+QLP  +++AATWG+HEGS+L+W++ +S W +  A+F+R
Sbjct  56   VLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR  115

Query  116  KNDRTFVAQSLVILGLICFSFAVFIVFFSNPFGRIFPA-PLEGRDLNPMLQDVGLIFHPP  174
            +    +VA+ L ++G++C +F  FI+F S PF+R +PA P+EGRDLNP+LQD GLIFHPP
Sbjct  116  QVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPP  175

Query  175  LLYLGYVGFAVNFAISITALLHQHLERQIAQIMRAWVSASWLFLTLGIVLGAWWAYYELG  234
            LLY+GYVGF+V FA++I+ALL  +L+  ++++ R+W  A+W+FLTLGIVLG+ WAYYELG
Sbjct  176  LLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELG  235

Query  235  WGGWWFWDPVENASLMPWLLGLALLHSLIVSEKRGIFNYWttlfsllafafsVLGTFIVR  294
            WGGWWFWDPVENAS+MPWL G ALLHS+ V+E+R+ F+ WT L+S+ AF++ +LGTF+VR
Sbjct  236  WGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVR  295

Query  295  SGALTSVHAFAVDSQRGSALLLIFFLLTVGSLGLFAFKANLQQRRVKLTLLSKESAVLFL  354
            SG L SVHAFA D+ RG  +L +  L+T GSL LFA +++  + RV+ +L S+ES +L  
Sbjct  296  SGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGN  355

Query  355  NVLLSIATVSTFLGTFYPMLFQAMNWGSISVGAPYFNSIFLPLLTLILIAMVFSLGLHWA  414
            NVLL  A +  +LGT+ P++ + +  GSISVG P+FN++F  L+  + + +  +  ++W+
Sbjct  356  NVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWG  415

Query  415  KADKGILFKR-------AALLLPSLLIAYFMIRQVMQNDSALQFNLTAYFLFTLAIWLLS  467
            + D+   +++       ++L+L+ LL    ++ + +   +A+   + A  +  LA+    
Sbjct  416  R-DRPRNIRKLLWAAVVTTLVLSVLLP--WLLEDKIIAMTAVGMAM-ACWIAVLAV--AE  469

Query  468  ATLWQNWCKLSVSRY-AMIFAHSGVAIATMGAVMSSYFGSEIGVRLSPQESQTLGQFDFR  526
            A  + ++   +   Y +M+ AH G+A++  G   S  ++ E +VR+ + +S T+ ++ F 
Sbjct  470  AVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  527  YTRFSSEIGPNFTAEVADFHVTANGKPYADLQPERRYYDVRTMTMSEVGLAGGFWGDLYI  586
            +       GPN+ + VA + VT +G P A L++E+R Y+   M M+E ++ GG+  DLY 
Sbjct  530  FREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYA  589

Query  587  VMGDPLGKGEFTFRLHYKPLIRWLW  611
             +G+ L++G  + RL YKP++RW+W
Sbjct  590  ALGEELDNGAWAVRLYYKPFVRWIW  614

497) Reut_B4770 in NC_007348


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  353 bits (1326),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 326/598 (55%), Positives = 447/598 (75%), Gaps = 10/598 (1%)

Query  53   AYVTLTLAFAGNDFSVRYVAANSNSDLPLAYRLAAVWGGHEGsmllwtlmlalwslaVSV  112
            A+  L  AF  NDF+V YVA+NSN++LP+ YR+AA WG+HEGS+LLW L+++ W+LAV+V
Sbjct  53   AFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAV  112

Query  113  FSRRLPLPVVARVLGVMGAISSGlllfllfASNPFIRLLPP-AMAGRDLNPLLQDPGMVF  171
            FSR++P  +VARVL+VMG + +G+L F+LF+S PF R LP+ ++ GRDLNPLLQDPG++F
Sbjct  113  FSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIF  172

Query  172  HPPMLYMGYVGFAVTFSFAVAALLEGRLDaawarwarpwttvawMFLTLGIMLGSAWAYY  231
            HPP+LYMGYVGF+V+F+FA+AALL GRLD+A +R ARPWT  AW+FLTLGI+LGSAWAYY
Sbjct  173  HPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYY  232

Query  232  ELGWGGWWFWDPVENASFMPWLAGTALMHSLAVTEKRGAFRAWTALLAIftfslsllgtf  291
            ELGWGGWWFWDPVENASFMPWLAGTAL+HS+AVTE+R++F+AWT LL+I +FSL LLGTF
Sbjct  233  ELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTF  292

Query  292  lVRSGVLTSVHAFAVDPKRGIFIlallglvtglalalfaWRAPRLARRTAFSLLSRETFl  351
            LVRSGVL SVHAFA DP RG+FILA++ LVTG +L LFA R+ R+  R   +L SRE++L
Sbjct  293  LVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLL  352

Query  352  lannvllaiaaatvllgtlYPLLVDVLGLGKISVGPAYFEQVFVPLMAPAVLLMGAAPLA  411
            L+NNVLL  A   VLLGTL PL+   LGLG ISVG ++F+ +F  LM P  LL+G +PL 
Sbjct  353  LGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLV  412

Query  412  RWRQGDLPDMARRLRWAA-AASIAIGVGLLLILRNasaltglglllaawcaasaaasvaa  470
            RW + D P   R+L WAA  +++ ++V L  +L +        ++  +  + + A  +A 
Sbjct  413  RWGR-DRPRNIRKLLWAAVVTTLVLSVLLPWLLED-------KIIAMTAVGMAMACWIAV  464

Query  471  rlrnqrgrrlaalrqlPAGYFGMLLAHLGVGVFIAGVTLVSSQESLRELPMQPGETVAVG  530
                +  +R++   + + +Y GM+ AHLG++V I+G+++  +    R++ M++G++V++ 
Sbjct  465  LAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIH  524

Query  531  DHDFRFGGVSPATGPNYEALRGIISVSRHGKTITTLMPERRIYRSQDMPTTEAAIDSGFT  590
            D  F F  V   TGPNY +  ++I+V+RHG   + L +E+R+Y +  M  TEAAID+G+T
Sbjct  525  DYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLT  584

Query  591  RDLYVALGESLGEGRWAVRIHVKPFVDWIWGGCVLMAIGGLLAACDRRYRLHRQAASA  648
            RDLY ALGE L++G WAVR+  KPFV WIW+G +LMA+GGLL   D RYR ++  + A
Sbjct  585  RDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEA  642

498) ccmF in NC_018286


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  353 bits (1327),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 286/587 (49%), Positives = 418/587 (72%), Gaps = 14/587 (2%)

Query  57   LMWAFITSDFSLRLVALNSHSAKPMLYKISGTWGNHEGSMLLWVLIVSLFGAVASVFGNG  116
            L+ AF+ +DF++  VA NS++  P+ Y++++TWG HEGS+LLWVL++S      +VF+  
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQ  116

Query  117  LPPTLKARVLAVQASIGVAFFAFILFTSNPFLR-LAAPPFDGQGLNPLLQDPGLAFHPPF  175
            +P+ + ARVLAV + +  +F+AFILFTS PF R L+A P +G++LNPLLQDPGL FHPP+
Sbjct  117  VPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPL  176

Query  176  LYLGYVGLSMAFSFAVAALIEGRVDAAWGRWVRPWTLAAWIFLTIGIALGSWWAYYELGW  235
            LY+GYVG+S+AF+FA+AAL+ GR+D+A  R  RPWTLAAW+FLT+GI LGS WAYYELGW
Sbjct  177  LYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGW  236

Query  236  GGFWFWDPVENASFMPWLLAAALLHSAIVVEKREALKSWTILLAILAFGFSLIGTFIVRS  295
            GG WFWDPVENASFMPWL ++ALLHS  V E+R ++K+WT+LL+I AF++ L+GTF+VRS
Sbjct  237  GGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRS  296

Query  296  GLLTSVHAFASDPERGVFILYIlafftggalllfalraqaMQAKGVFGLVSRETALVANN  355
            G+L SVHAFASDP RG+FIL ++ + TGG+LLLFA+R++ ++++   +L SRE+ L++NN
Sbjct  297  GVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNN  356

Query  356  ILLAVSCFVVFFGTLWPVVAEMAFDRKLSVGPPFFNAAFTPFMVVLGAILPVGAMLPWKR  415
            +LL  + +VV++GTL P+V        +SVG PFFN+ FT +MV ++ +L VG+++ W R
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  416  G---LLGRTAWrlrfvfalavalgvlaWAMQTGRSGLGPIGLFIGVWVVVGAFADLWLRG  472
            +    + +  W    V +  V   +L+W ++    ++ ++G+ ++ W+ V A A+     
Sbjct  417  DRPRNIRKLLW--AAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAE-----  469

Query  473  SATGRWQRLLRLPRADWGKALAHAGLGVTIFAIA-GLTAWQDEDIRVAEVNRPFNVGAYT  531
             A  R  R  + + + WG   AH GL+VTI +IA +     + D+R+   + +  +  Y 
Sbjct  470  -AVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGD-SVTIHDYR  527

Query  532  LELQNVRRVQGPNYLSTMADIEVTRAGRFVALLNPEKRDYPVSRMPTTEAAIDYRFLRDL  591
            + +++VR + GPNY + +A I VTR G   A+L++EKR Y  SRM  TEAAID  + RDL
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  592  YVVIGDQQANGGWTVRTYIKPLANWIWggcllmalggllslTDRRFR  638
            Y  +G++  NG+W+VR Y KP+  WIW+G LLMALGGLL L+D R+R
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

499) ccmF in NC_007204


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  353 bits (1326),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 302/624 (49%), Positives = 444/624 (72%), Gaps = 16/624 (2%)

Query  28   GVMRDHVAWQRLAPSLAWAQFAAMITSFGALMAGFYFNDFSLVYVSQHSNTLLPWYYKLS  87
            GV R++      A  +AW  F  +  +F  L+ +F  NDF++ YV+ +SNT LP  Y+++
Sbjct  27   GVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVA  86

Query  88   ATWGGHEGSLLLWMTIMATWCALVSYFSRGLPLSMRARVLVILAGVQMMMLAMLIFTSSP  147
            ATWG+HEGSLLLW+ +M+ W   V+ FSR +P  + ARVL +++ V    LA ++FTS+P
Sbjct  87   ATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGP  146

Query  148  FDRTLPNLPVDGADLNPVLQDFGLIIHPPMLYMGYVGMVVPFAFCMAALWEGRLDAVWTR  207
            F RTLP +PV+G DLNP+LQD GLI+HPP+LYMGYVG  V+FAF +AAL  GRLD+  TR
Sbjct  147  FARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTR  206

Query  208  WSRPWALAAWGFLTIGIALGSWWAYYELGWGGWWFWDPVENasllpwlaglallhslaVT  267
             +RPW+LAAW FLT+GI LGS WAYYELGWGGWWFWDPVENAS++PWLAG ALLHS+AVT
Sbjct  207  FARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVT  266

Query  268  EKRGVFKAWTIMLAIFAFALSLLGTFLVRSGVITSVHSFAADPTRglvvlailgiiiggg  327
            E+R+ FKAWT++L+I AF+L LLGTFLVRSGV+ SVH+FA+DP+RG+ +LA++ ++ GG+
Sbjct  267  EQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGS  326

Query  328  llMFAVRGWRLTIESQYQLISRESFlvinnviiliatlvvllgtlYPIIADAFNLGQVSV  387
            LL+FAVRG R+    +  L SRES+L+ NNV+++ A LVVLLGTL P++   + LG +SV
Sbjct  327  LLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISV  386

Query  388  GPPYFNALFVPLTWLLM---VAMGMGSNIRWKQDSRPLLGVGM-viaasslvlaaviaYF  443
            G P+FN++F   TWL++   + +G+G+ +RW +D    +   +     ++LVL+ +++ +
Sbjct  387  GEPFFNTMF---TWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWL  443

Query  444  VSPSAMLNIGVTLAVSFWVLLWMVVDFKDKTKNAPSFFKGLAKLRLSYWGQQTAHigvii  503
            +    +   +V +A++ W+ +  V +  ++   +       +K  LSYWG  +AH+G+ +
Sbjct  444  LEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG-------TKTSLSYWGMVAAHLGLAV  496

Query  504  avigiaFTSTLSIERDVALGETDTVHVQGYDFEIKDFHEVRGSNFDGMQAEVEVTKDGRP  563
            ++ GIAF+   S+ERDV +   D+V +++Y F +++ +++ G+N+ G  A + VT++G P
Sbjct  497  TITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEP  556

Query  564  VVTLYPEKRTYVISGMPLTEAAIDASLMRDVYVALGEPIAEDGNQWAIRIYVKPLIRWIW  623
               L +EKR Y  S M +TEAAID++L RD+Y ALGE +  D   WA+R+Y KP++RWIW
Sbjct  557  EAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEEL--DNGAWAVRLYYKPFVRWIW  614

Query  624  lgaiimalggllSMLDRRYRLKTT  647
             G+++MALGGLL + D RYR +  
Sbjct  615  AGGLLMALGGLLCLADPRYRRRKP  638

500) ccmF in NC_020911


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  353 bits (1327),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 277/601 (47%), Positives = 403/601 (68%), Gaps = 42/601 (6%)

Query  50   VGVSFAALTYAFVVSDFSVKLVASNSHSAKPMLYKISGVWGNHEGSMLLWQLILVLFGAC  109
            V+ +F  L  AFVV+DF+V  VA+NS++  P+ Y++++ WG HEGS+LLW L++      
Sbjct  50   VAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLA  109

Query  110  ASWFGGNLPSSLRARVLGVQASVSVAFYAFILFTSNPFERLEFPPF--DGRDLNPLLQDP  167
             + F+ ++P+ + ARVL+V + V  +F AFILFTS PF R  +P+F  +GRDLNPLLQDP
Sbjct  110  VAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFAR-TLPAFPVEGRDLNPLLQDP  168

Query  168  GLAFHPPFLYLGYVGLSMSFSFAIAALLEGRVDAAWGRWVRPWTLAAWIFLTIGIALGSW  227
            GL FHPP+LY+GYVG+S++F+FAIAALL GR+D+A  R  RPWTLAAW+FLT+GI LGS 
Sbjct  169  GLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSA  228

Query  228  WAYYELGWGGFWFWDPVENASLMPWLLAAALLHSAIVVEKRESLKAWTILLAILAFGFSL  287
            WAYYELGWGG WFWDPVENAS+MPWL ++ALLHS  V E+R ++KAWT+LL+I AF++ L
Sbjct  229  WAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCL  288

Query  288  LGTFIVRSGVLTSVHAFANDPERGVFILMIlaffvggglllfalragSMESKGVFGLVSR  347
            LGTF+VRSGVL SVHAFA+DP RG+FIL ++ +  GG+LLLFA+R+  + S+   +L SR
Sbjct  289  LGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSR  348

Query  348  ETAIVSNNVLLAVSCFVVFWGTIWPLVVELASANAVWGGGMTNPFYAIGLFDRPEQVSVG  407
            E+ +++NNVLL  + +VV+ GT+ PLV                    +GL      +SVG
Sbjct  349  ESLLLGNNVLLMAAMLVVLLGTLLPLVHK-----------------QLGL----GSISVG  387

Query  408  PPFFNFAFTLIFVPLTLVLPIGAVLAWKRGSLARAAKSM--APVAALAIACGLLAYAVQT  465
             PFFN  FT + VP++L+L +G+++ W R+  +R  + +  A+V +  +   LL+  ++ 
Sbjct  388  EPFFNTMFTWLMVPFALLLGVGPLVRWGRDR-PRNIRKLLWAAVVTTLVLSVLLPWLLED  446

Query  466  GRSAMGPIGVALGIWVVGGAAMDLWLRTGRGALEDRVKRLIRLPRADWGKFTAHAGMGVT  525
               AM ++G+A++ W+   A  +           +RV R  + + + WG  +AH G++VT
Sbjct  447  KIIAMTAVGMAMACWIAVLAVAE---------AVQRVSRGTKTSLSYWGMVAAHLGLAVT  497

Query  526  VFAVAALLAWE-DEDIRVAQIGDRWQVGIHEIELT--DVVDIEGPNYFGEGGIITVIRNG  582
            + ++A       + D+R+ + GD   V IH+  +T  +V DI GPNY G  ++I V R+G
Sbjct  498  ITGIAFSQNYSVERDVRM-RAGD--SVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHG  554

Query  583  RDVGKVFAEKRIYPVAQMPTTEAGIRNGILRDVYVVLGDRQTGGGWAVRTYIKPFANWVW  642
               + + AEKR+Y  ++M  TEA+I  G+ RD+Y  LG+    G+WAVR Y KPF  W+W
Sbjct  555  EPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

Query  643  G  643
            +
Sbjct  615  A  615

501) KKY_2811 in NC_016078


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  353 bits (1325),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 266/581 (46%), Positives = 395/581 (68%), Gaps = 13/581 (2%)

Query  44   LQFGLVGLSFAALVQAFMSDDFSLRLAVQHSNSLQPMLYKFTSTWGNHEGSMLLFVLTLT  103
            L F  V+ +F  LV+AF+ +DF++     +SN+  P+ Y+ ++TWG HEGS+LL VL ++
Sbjct  45   LLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMS  104

Query  104  LFGAAVAAFGRNLPNELKTLVLANQGLMVAAFSAFVIFTSNPF-WRLDPAPFDGTELNPI  162
                AVA F+R++P ++ + VLA  G++ A+F AF++FTS PF + L + P +G +LNP+
Sbjct  105  GWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPL  164

Query  163  LQDIGLAIHPPLLYLGYVGFSICFSFAIAALVSGRIDAAWARWVRPWTLASWAFLTLGIA  222
            LQD GL +HPPLLY+GYVGFS+ F+FAIAAL+SGR+D+A +R  RPWTLA+W FLTLGI 
Sbjct  165  LQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIV  224

Query  223  MGSYWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSAVVMEKRNALKIWTIFLAIVTF  282
            +GS WAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  V E+R ++K WT++L+I +F
Sbjct  225  LGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAF  284

Query  283  SLSLLGTFLVRSGILTSVHAFASDPTRGTVilamlaaliggaFTLFALRASSLRHGGLFA  342
            SL LLGTFLVRSG+L SVHAFASDP+RG  ILA +  + GG++ LFA+R+  +R     A
Sbjct  285  SLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNA  344

Query  343  PISREGALILNNVFLAAATTGVLVGTLYPLVLESFTGARITVGAPFFDLTFGALMVplll  402
              SRE+ L+ NNV+L AA   VL+GTL PLV   +  + I+VG PFF+  F  LMVP+ L
Sbjct  345  LWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFAL  404

Query  403  lipfgpflAWKRGDLVAVGQRLIAAIVVTLVLS-LLVFAFLGFPVTLAPIGLGIGIWVMV  461
            L+  GP++ W R+    + + L AA+V TLVLS LL   + +  ++++++G++++ W+ V
Sbjct  405  LLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAV  464

Query  462  GAIAEIADRIAAGRVTPAQSWARLKGLPRTAWSTAIAHFGVGVSVIGIVCATAFQTEIVT  521
             A+AE  +R++ G  T+            + W+   AH+G++V++ GI  +  +  E   
Sbjct  465  LAVAEAVQRVSRGTKTSL-----------SYWGMVAAHLGLAVTITGIAFSQNYSVERDV  513

Query  522  SMRAGETIEISGYSVTYQGETQVGGPNFTAERGSFAIRSPWDGVREVTSERRIYPVSGTS  581
             MRAG+++ I +Y  T++   ++ GPN+ +  + +++    +    + +E+R+Y  S   
Sbjct  514  RMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMV  573

Query  582  TTEAGIRTYGLSQMYVQFGERFGTDGRVVRLWHKPFVLLIW  622
             TEA+I      ++Y  +GE ++ +++ VRL  KPFV  IW
Sbjct  574  MTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

502) ccmF2 in NC_013722


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  353 bits (1324),  Expect = 3e-98, Method: Compositional matrix adjust.
 Identities = 325/632 (52%), Positives = 439/632 (70%), Gaps = 32/632 (5%)

Query  27   GAQRGDARWMAVARPAAYAQLLL--VAGAFALLTCAFVTGDFSVAYVADNSNALLPLVYR  84
            G  RGDAR   +A ++ +A LL+  VAGAF +L  AFV  DF+VAYVA+NSN+ LP+ YR
Sbjct  27   GVARGDAR--MMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYR  84

Query  85   YSAVWGAHEGSlllwtlilalwtaavalSSRRLPASVVARVIGTLALVSTGFLAFLLFTS  144
             +A WGAHEGSLLLW L+++ WT AVA+ SR++PA +VARV++ +++V +GFLAF+LFTS
Sbjct  85   VAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTS  144

Query  145  NPFARLLPA-PLEGHDLNPLLQDPGLVIHPPLLYTGYvgfavpfafavaaLLDGQVDARW  203
             PFAR LPA P+EG+DLNPLLQDPGL++HPPLLY GYVGF+V+FAFA+AALL G++D+  
Sbjct  145  GPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAF  204

Query  204  LRWTRPWTNVAWGFLTIGIALGSWWAYDELGWGGWWFWDPVENASFMPWLTGAALLHSQA  263
             R +RPWT  AW FLT+GI LGS WAY ELGWGGWWFWDPVENASFMPWL+G+ALLHS A
Sbjct  205  TRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMA  264

Query  264  ITEKRGSFAAWTLLLAIATFSLSLLGTFLVRSGVLTSVHSFAADPARGLFIlvflsllcg  323
            +TE+R++F AWTLLL+I +FSL LLGTFLVRSGVL SVH+FA+DPARG+FI        +
Sbjct  265  VTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFI-------LA  317

Query  324  galllyalrgghlgTATDTARQAFTAA--SRETlllinnlllTCACAMVLLGTLYPLLAD  381
              +L+ +     ++   +  R     A  SRE+LLL NN+LL  A  +VLLGTL PL+  
Sbjct  318  FMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHK  377

Query  382  ALGLGKLSVGPPYFGTlfvvlmaplvallpfGPLTRWQREQASRplallapwaglallag  441
             LGLG +SVG P+F T+F  LM P+  LL  GPL RW R+++     LL +    +L+ +
Sbjct  378  QLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLS  437

Query  442  tlgfflapQGPW--------KTGVGIAAAAWV-LLGTARFVWSRIQLKGSRFSAEMLGMT  492
             L        PW         T+VG+A A W+ +L+ A  V  R+  +G++ S    GM 
Sbjct  438  VLL-------PWLLEDKIIAMTAVGMAMACWIAVLAVAEAV-QRVS-RGTKTSLSYWGMV  488

Query  493  LAHGGIAVFLIGALLVEALEQQREVALAPGQHLEMGRYRFELQDLDQHRGPNYVAERAHV  552
             AH G+AV + G  + +    +R+V + +G+ + +  YRF ++++ +  GPNY +  A +
Sbjct  489  AAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALI  548

Query  553  QVLHDDRPLTQLFPEKRLYASGGQAMTEAGIHAGLYGDIYVSLGEPLGGNAWAIRLQIKP  612
             V +++ P + L +EKRLY ++   MTEA+I++GL  D+Y +LGE L+  AWA+RL  KP
Sbjct  549  GVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKP  608

Query  613  FVRWIWLGAALMALGGFVSAADRRLRRSPETP  644
            FVRWIW G+ LMALGG++  AD R RR    P
Sbjct  609  FVRWIWAGGLLMALGGLLCLADPRYRRRKPLP  640

503) Rru_A0035 in NC_007643


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  353 bits (1325),  Expect = 3e-98, Method: Compositional matrix adjust.
 Identities = 281/582 (49%), Positives = 403/582 (70%), Gaps = 13/582 (2%)

Query  46   LFGLIVLAFAALTYCYVVSDFSVMNVFENSHSDKPMLYKVSGVWGNHEgslllwililsg  105
            LF  +  AF  L   +VV+DF+V  V  NS+++ P+ Y+V++ WG HEGSLLLW+L++SG
Sbjct  46   LFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSG  105

Query  106  fslAVSLVGGNLPPALRARTLSVQAMITCGFLLFILFTSNPFARVPGLEVPLNGRGLNPL  165
             +LAV++ + ++P+ + AR L+V +M+  GFL FILFTS PFAR      P++GR+LNPL
Sbjct  106  WTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLP-AFPVEGRDLNPL  164

Query  166  LQDPGLAFHPPMLYAGYVGFSMAFSFAIAALIEGKVDAAWARWVRPWTLVAWVFLTFGIA  225
            LQDPGL FHPP+LY GYVGFS+AF+FAIAAL+ G++D+A +R  RPWTL AWVFLT+GI 
Sbjct  165  LQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIV  224

Query  226  LGSWWAYYELGWGGWWFWDPVENASFIPWLSGTALLHSAVVVEKRDALKSWTILLAIVTF  285
            LGS WAYYELGWGGWWFWDPVENASF+PWL+GTALLHS  V E+R ++K+WT+LL+I +F
Sbjct  225  LGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAF  284

Query  286  SLSLLGTFLVRSGVITSVHAFATDPTRGLFILGLLLVAIGGSFTLYAVRAPALKGGGLFA  345
            SL LLGTFLVRSGV+ SVHAFA+DP+RG+FIL+++++  GGS+ L+AVR+  +++    A
Sbjct  285  SLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNA  344

Query  346  PISREGGLLINNLLMSTASATVLLGTLYPLIADALDLGKVTVGAPFFNRVFlplmvpllv  405
              SRE+ LL NN+L+ +A   VLLGTL PL+   L+LG ++VG PFFN +F  LMVP+ +
Sbjct  345  LWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFAL  404

Query  406  lmAIGPLLSWkradlrgalgrlkgalIVAALVfagtflatggglaqvgaaagMTLAAWVL  465
            L+++GPL+ W   D    + +L  A +V++LV++  +     +     +A GM++A W+ 
Sbjct  405  LLGVGPLVRW-GRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIA  463

Query  466  VGTLVELADRIRFLRIPLADSLRRLVGLPRSTWGMVLAHggmglvvigvvgNTAWKAESI  525
            V ++ E  +R+            R    + S WGMV AH G+++ + G+  +     E  
Sbjct  464  VLAVAEAVQRV-----------SRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERD  512

Query  526  QTLRPGESRELAGHTFTLQGAAPIQGPNYEALRGDILLSREGETLARLAPEKRLYTTPPM  585
              +R+G+S  + +  FT++    I GPNY +  + I ++R+GE  A L +EKRLY T+ M
Sbjct  513  VRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRM  572

Query  586  PTTEAGIHSNGLSDYYAVIGDPTDNGGFVTRFYYEPAVPFLW  627
              TEA+I++    D YA +G+  DNG+   R+YY P V  +W
Sbjct  573  VMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

504) F11_00180 in NC_017584


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  353 bits (1325),  Expect = 3e-98, Method: Compositional matrix adjust.
 Identities = 281/582 (49%), Positives = 403/582 (70%), Gaps = 13/582 (2%)

Query  46   LFGLIVLAFAALTYCYVVSDFSVMNVFENSHSDKPMLYKVSGVWGNHEgslllwililsg  105
            LF  +  AF  L   +VV+DF+V  V  NS+++ P+ Y+V++ WG HEGSLLLW+L++SG
Sbjct  46   LFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSG  105

Query  106  fslAVSLVGGNLPPALRARTLSVQAMITCGFLLFILFTSNPFARVPGLEVPLNGRGLNPL  165
             +LAV++ + ++P+ + AR L+V +M+  GFL FILFTS PFAR      P++GR+LNPL
Sbjct  106  WTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLP-AFPVEGRDLNPL  164

Query  166  LQDPGLAFHPPMLYAGYVGFSMAFSFAIAALIEGKVDAAWARWVRPWTLVAWVFLTFGIA  225
            LQDPGL FHPP+LY GYVGFS+AF+FAIAAL+ G++D+A +R  RPWTL AWVFLT+GI 
Sbjct  165  LQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIV  224

Query  226  LGSWWAYYELGWGGWWFWDPVENASFIPWLSGTALLHSAVVVEKRDALKSWTILLAIVTF  285
            LGS WAYYELGWGGWWFWDPVENASF+PWL+GTALLHS  V E+R ++K+WT+LL+I +F
Sbjct  225  LGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAF  284

Query  286  SLSLLGTFLVRSGVITSVHAFATDPTRGLFILGLLLVAIGGSFTLYAVRAPALKGGGLFA  345
            SL LLGTFLVRSGV+ SVHAFA+DP+RG+FIL+++++  GGS+ L+AVR+  +++    A
Sbjct  285  SLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNA  344

Query  346  PISREGGLLINNLLMSTASATVLLGTLYPLIADALDLGKVTVGAPFFNRVFlplmvpllv  405
              SRE+ LL NN+L+ +A   VLLGTL PL+   L+LG ++VG PFFN +F  LMVP+ +
Sbjct  345  LWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFAL  404

Query  406  lmAIGPLLSWkradlrgalgrlkgalIVAALVfagtflatggglaqvgaaagMTLAAWVL  465
            L+++GPL+ W   D    + +L  A +V++LV++  +     +     +A GM++A W+ 
Sbjct  405  LLGVGPLVRW-GRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIA  463

Query  466  VGTLVELADRIRFLRIPLADSLRRLVGLPRSTWGMVLAHggmglvvigvvgNTAWKAESI  525
            V ++ E  +R+            R    + S WGMV AH G+++ + G+  +     E  
Sbjct  464  VLAVAEAVQRV-----------SRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERD  512

Query  526  QTLRPGESRELAGHTFTLQGAAPIQGPNYEALRGDILLSREGETLARLAPEKRLYTTPPM  585
              +R+G+S  + +  FT++    I GPNY +  + I ++R+GE  A L +EKRLY T+ M
Sbjct  513  VRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRM  572

Query  586  PTTEAGIHSNGLSDYYAVIGDPTDNGGFVTRFYYEPAVPFLW  627
              TEA+I++    D YA +G+  DNG+   R+YY P V  +W
Sbjct  573  VMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

505) ccmF in NC_019382


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  352 bits (1323),  Expect = 4e-98, Method: Compositional matrix adjust.
 Identities = 328/634 (52%), Positives = 448/634 (71%), Gaps = 27/634 (4%)

Query  1    MIPEIGLFSLILALLVAIVQGVLPLVGASTGWQAGLRVARPAAVTQ---FCLVTVAMGCL  57
            M+PE G   L LAL VA++ +V PL G + G   + R+  +A+V     F  V+ A   L
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARG---DARMMASAGVFAWLLFICVAGAFFVL  57

Query  58   AWSFLDNDFSVLYVAGNSHADLPAAYRFAALWGGHEGSlllwlylltawtlavalHSRAL  117
              +F+ NDF+V YVAGNS+++LP  YR AA WG+HEGSLLLW+ L+++WTLAVA+ SR +
Sbjct  58   VHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQV  117

Query  118  PPAFAARVLAVMAWISIGfllfllflSNPFERLMPP-AQAGRDLNPLLQDPGMIVHPPML  176
            P+ + ARVLAVM+ +  GFL F+LF S PF R +P+ +  GRDLNPLLQDPG+I HPP+L
Sbjct  118  PADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLL  177

Query  177  YMGYVGFSVAFAFAIAALLSGELDAIWARWVRPWTLLAWMFLTIGILLGSAWAYYVLGWG  236
            YMGYVGFSVAFAFAIAALLSG LD+  +R  RPWTL AW+FLT+GI+LGSAWAYY LGWG
Sbjct  178  YMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWG  237

Query  237  GWWFWDPVENASFMPWLAGTALIHSLIVTERRGAFRSWTVllaiaafslsilGTFLVRSG  296
            GWWFWDPVENASFMPWLAGTAL+HS+ VTE+R++F++WT+LL+I AFSL +LGTFLVRSG
Sbjct  238  GWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSG  297

Query  297  VLTSVHAFAVDPGRGLYILGFMTLIVGGSLALYAWRAPTVGLGGGFALLSRESlllgnnv  356
            VL SVHAFA DP+RG++IL+FM L+ GGSL L+A R+  V      AL SRESLLLGNNV
Sbjct  298  VLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNV  357

Query  357  vlaaatgavllgtlYPVALDVLDWGKISIGPPYFEAVFVPLMTPAIFLMGVGPMARWKHS  416
            +L AA   VLLGTL P+    L+ G IS+G P+F+++F  LM P  +L+GVGP+ RW + 
Sbjct  358  LLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRD  417

Query  417  AVPDLAQRLRIAFGVSLATALAVPLAWPGARAWPGSPLIvlglwlaawsvasaaahawQR  476
               ++ + L+ A   +L   L+V L+W           ++ +  +A  +V+ A A     
Sbjct  418  RPRNIRKLLWAAVVTTL--VLSVLLPW-----------LLEDKIIAMTAVGMAMACWIAV  464

Query  477  LADGEGSWARRLRRQPRA----WYGMLLAHAGVGVFIAGVTLANGYEDKQELRMDIGATQ  532
            LA +E+   +R+ R  ++    W GM+ AH G++V I+G+++++ Y   +++RM  G + 
Sbjct  465  LAVAEA--VQRVSRGTKTSLSYW-GMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSV  521

Query  533  AAGGYQFTFAGIAPAAGPNYQAERARFVVTRDGRPVVTLHPEKRHYTVQGMPLSHAAIDT  592
            +  +Y+FTF  +   +GPNY++  A + VTR+G P   LH+EKR Y    M +++AAID 
Sbjct  522  TIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDG  581

Query  593  RFTRDLFVALGEPVGERAWTVRLQVKPFMAWIWS  626
             +TRDL+ ALGE +++ AW+VRL  KPF+ WIW+
Sbjct  582  GLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

506) ccmF in NC_014034


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  352 bits (1323),  Expect = 4e-98, Method: Compositional matrix adjust.
 Identities = 297/620 (48%), Positives = 419/620 (68%), Gaps = 8/620 (1%)

Query  1    MIVETGHFALILALCVALVQAVIPLVGAQKGWSGWMAVATPAALAQFGLIAIAFAALTYA  60
            M+ E GH  L LAL VAL+ +V PL G  +G +  MA A   A   F  +A AF  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVTSDFSLKLVYENSHTDKPMLYKVTGVWGNHEGSMLLWVLILamfgaaaaafggaLPER  120
            FV +DF++  V  NS+T+ P+ Y+V++ WG HEGS+LLWVL+++    A A F+  +P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRARVLAVQGTIGVAFLVFVLFTSNPFLR-LEEAPFNGRDMNPLLQDPGLAFHPPFLYLG  179
            + ARVLAV G +  +FL F+LFTS PF R L   P +GRD+NPLLQDPGL FHPP+LY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGLSMAFSFAVAALIEGRVDAAWARWVRPWTLAAWIFLTIGIALGSWWAYYELGWGGFW  239
            YVG+S+AF+FA+AAL+ GR+D+A +R  RPWTLAAW+FLT+GI LGS WAYYELGWGG W
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLLAAALLHSAIVVEKREALKSWTILLAIMAFGFSLIGTFLVRSGVIS  299
            FWDPVENAS+MPWL ++ALLHS  V E+R ++K+WT+LL+I AF++ L+GTFLVRSGV+ 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFANDPERGVFILFILAFFTGGALTLYAARASEMQAKGLFSMVSRESalvmnnvlla  359
            SVH+FA+DP RG+FIL ++ + TGG+L L+A R+  ++++   ++ SRES L+ NNVLL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  vaalvvFTGTVWPLIAELFWDRKLSVGAPFFEKAFTPFMVGLALLLPLGSMMPWKRASLG  419
             A LVV+ GT+ PL+   +    +SVG PFF+  FT +MV +ALLL +G+++ W R    
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  KlvrpllpalvltlavlalvwvMATGRPMlalgaaglgaw-ilfgalaEIWQRAGRTPGR  478
            ++ + L +A+V TL +  L+  +  ++ +   + +   A  I   A+AE  QR +R    
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  479  ILRLPRADWGKAFAHGGLGIVFAGVGLLMAGQVE-DIRVAKAGDSFEVAGYTITLVSVED  537
             L      WG   AH GL++ ++G+++     VE D+R+ +AGDS  + +Y +T+  V D
Sbjct  481  SLSY----WGMVAAHLGLAVTITGIAFSQNYSVERDVRM-RAGDSVTIHDYRFTFREVRD  535

Query  538  VPGPNFTAKTATMEVRQGGKLVATLHPEKRIYPVQAMPTTEADIDNGFWRDVYLVIGDPQ  597
            + GPN+ +  A + V + G   A LH+EKR+Y    M  TEA ID G+ RD+Y  +G+  
Sbjct  536  ITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEEL  595

Query  598  EGGGWAVRTYVKPFANWIWA  617
            + G+WAVR Y KPF  WIWA
Sbjct  596  DNGAWAVRLYYKPFVRWIWA  615

507) cycK in NC_008209


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  352 bits (1323),  Expect = 4e-98, Method: Compositional matrix adjust.
 Identities = 292/642 (46%), Positives = 442/642 (69%), Gaps = 11/642 (1%)

Query  1    MITELGHFALILAFMVAIVQTVVPLIGAHKRWPSWMAVAEPAANAQFLLTAFSFGALMWA  60
            M+ E GH  L LA+ VA++ +V PL G  +  +  MA A   A   F+  A +F  L+ A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FIVSDFSLQLVTLNSHSAKPMLYKISGTWGNHEGSMLLWVLIVALFGAMAAWFGGNLPPT  120
            F+V+DF++  V+ NS++  P+ Y++++TWG HEGS+LLWVL+++      A F+ ++P+ 
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LKARVLSVQaaigvaffafiifTSNPFIR-LAVPPFDGQDLNPLLQDPGLAFHPPFLYLG  179
            + ARVL+V + +  +F+AFI+FTS PF R L+  P +G+DLNPLLQDPGL FHPP+LY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGLSMAFSFAVAALIEGRVDAAWGRWVRPWTLAAWVFLTIGIALGSWWAYYELGWGGFW  239
            YVG+S+AF+FA+AAL+ GR+D+A  R  RPWTLAAWVFLT+GI LGS WAYYELGWGG W
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASFMPWLLAAALLHSAIVVEKRESLKSWTILLAILAFGFSLIGTFIVRSGLLT  299
            FWDPVENASFMPWL ++ALLHS  V E+R ++K+WT+LL+I AF++ L+GTF+VRSG+L 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFANDPERGVFILMIMGFFMGGALILFAFRAGAMEARGVFGVVSRESalvannllla  359
            SVHAFA+DP RG+FIL +M +  GG+L+LFA R+  + +R   ++ SRES L++NN+LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  vSCFVVFVGTMWPLVAEMFFDRKLSVGPPFFNMAFSPFMLVLGILLPIGSAMPWKRAHIA  419
             + +VV++GT+ PLV   +    +SVG PFFN  F+ +M+ +++LL +G+ + W R +  
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  RALRPLRYVFVLALAIGG-LAYAMQSGRSLLGPIGLFLAAWIVMGTIIDFIQRAGRGPDR  478
               + L+   V +L ++  L+  ++     + ++G+ +A WI + ++ + +QR +RG   
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT--  478

Query  479  WARILRLPRADWGKMVAHAGVGVTMMGVCGIMAWQYE-DIRVAQFGEPYEVGRYTITLDK  537
                 + + + WG + AH G++VT+ G+        E D+R+   G++  +  Y +T+  
Sbjct  479  -----KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRA-GDSVTIHDYRFTFRE  532

Query  538  VSNYEGPNFLSTTGYITLAQDGREIAQLKPEKRIYPVAQMPTTEAAIDYDLFRDVYVVIG  597
            V +  GPN+ +  + I ++++G   A L +EKR+Y  ++M  TEAAID +L RD+Y  +G
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  598  DEQANGGWAVRTYIKPLTNWIWIgsglmslggllslsDRRFR  639
            +E  NG+WAVR Y KP+  WIW G+ LM+LGGLL L+D R+R
Sbjct  593  EELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

508) Pcryo_1743 in NC_007969


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  352 bits (1322),  Expect = 5e-98, Method: Compositional matrix adjust.
 Identities = 304/624 (49%), Positives = 447/624 (72%), Gaps = 16/624 (2%)

Query  28   GVMRDHVAWQRLAPSLAWAQFAAMITSFGALMAGFYFNDFSLVYVSQHSNTLLPWYYKLS  87
            GV R++      A  +AW  F  +  +F  L+ +F  NDF++ YV+ +SNT LP  Y+++
Sbjct  27   GVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVA  86

Query  88   ATWGGHEGSLLLWMTIMATWCALVSYFSRGLPLSMRARvlvilaavqmmmlamliFTSSP  147
            ATWG+HEGSLLLW+ +M+ W   V+ FSR +P  + ARVL +++ V    LA ++FTS+P
Sbjct  87   ATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGP  146

Query  148  FDRTLPNLPVDGADLNPVLQDFGLIIHPPMLYMGYVGMVVPFAFCMAALWEGRLDAVWTR  207
            F RTLP +PV+G DLNP+LQD GLI+HPP+LYMGYVG  V+FAF +AAL  GRLD+  TR
Sbjct  147  FARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTR  206

Query  208  WSRPWALAAWGFLTIGIALGSWWAYYELGWGGWWFWDPVENasllpwlaglallhslaVT  267
             +RPW+LAAW FLT+GI LGS WAYYELGWGGWWFWDPVENAS++PWLAG ALLHS+AVT
Sbjct  207  FARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVT  266

Query  268  EKRGVFKAWTIMLAIFAFALSLLGTFLVRSGVITSVHSFAADPTRglvilailgiivggg  327
            E+R+ FKAWT++L+I AF+L LLGTFLVRSGV+ SVH+FA+DP+RG+ ILA++ ++ GG+
Sbjct  267  EQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGS  326

Query  328  llMFAVRGWRLTIESQYQLISRESFlvinnviiliatlvvllgtlYPIIADAFNLGQVSV  387
            LL+FAVRG R+    +  L SRES+L+ NNV+++ A LVVLLGTL P++   + LG +SV
Sbjct  327  LLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISV  386

Query  388  GPPYFNALFVPLTWLLM---IAMGMGSNIRWKQDSRPLLGAGM-viaasslvlaaviTYF  443
            G P+FN++F   TWL++   + +G+G+ +RW +D    +   +     ++LVL+ ++  +
Sbjct  387  GEPFFNTMF---TWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWL  443

Query  444  VSPSAMLNIGVTLAVSFWVLLWMVVDFKDKTKNAPSLFKGLAKLRLSYWGQQTAHigvii  503
            +    +   +V +A++ W+ +  V +  ++   +       +K  LSYWG  +AH+G+ +
Sbjct  444  LEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG-------TKTSLSYWGMVAAHLGLAV  496

Query  504  avigvaFTSTLSIERDVALRIGETVNVQGYDFALTDLRETRGSNFDATQAEVTVTKKGKA  563
            ++ G+AF+   S+ERDV +R G++V +++Y F++ ++R+  G+N+ +  A + VT+ G +
Sbjct  497  TITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEP  556

Query  564  VTILHPEKRTYIISTMPTTEAAINANLMRDLYVALGEPIAEGSNQWAVRIYVKPLIRWIW  623
             ++LH+EKR Y  S M  TEAAI++ L RDLY ALGE + +G+  WAVR+Y KP++RWIW
Sbjct  557  EAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGA--WAVRLYYKPFVRWIW  614

Query  624  lgaiimalggllSMLDRRYRLKTT  647
             G+++MALGGLL + D RYR +  
Sbjct  615  AGGLLMALGGLLCLADPRYRRRKP  638

509) ANH9381_0168 in NC_016513


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  351 bits (1318),  Expect = 8e-98, Method: Compositional matrix adjust.
 Identities = 242/565 (43%), Positives = 388/565 (69%), Gaps = 15/565 (2%)

Query  56   ILAYSFAADDFTLEYVAAHSNSQLPTFFKIAATWGGHEGSMLFWLFSLSVWVVLFALFNR  115
            +L  +F  +DFT+ YVA++SN+QLP  +++AATWG+HEGS+L+W++ +S W +  A+F+R
Sbjct  56   VLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR  115

Query  116  KNDRTFVAQSLVILGLICFSFAVFIVFFSNPFGRIFPA-PLEGRDLNPMLQDVGLIFHPP  174
            +    +VA+ L ++G++C +F  FI+F S PF+R +PA P+EGRDLNP+LQD GLIFHPP
Sbjct  116  QVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPP  175

Query  175  LLYLGYVGFAVNFAISITALLHQHLERQIAQIMRAWVSVSWLFLTLGIVLGAWWAYYELG  234
            LLY+GYVGF+V FA++I+ALL  +L+  ++++ R+W   +W+FLTLGIVLG+ WAYYELG
Sbjct  176  LLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELG  235

Query  235  WGGWWFWDPVENASLMPWLLGLALLHSLIVSEKRGIFNYWttlfsllafafsVLGTFIVR  294
            WGGWWFWDPVENAS+MPWL G ALLHS+ V+E+R+ F+ WT L+S+ AF++ +LGTF+VR
Sbjct  236  WGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVR  295

Query  295  SGALTSVHAFAVDSQRGSALLLIFFLLTVGSLGLFAFKANLQQRRVKLTLLSKESAVLFL  354
            SG L SVHAFA D+ RG  +L +  L+T GSL LFA +++  + RV+ +L S+ES +L  
Sbjct  296  SGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGN  355

Query  355  NVLLSIATVSTFLGTFYPMLFQAMNWGSISVGAPYFNSIFLPLLTLILIAMVFSLGLHWA  414
            NVLL  A +  +LGT+ P++ + +  GSISVG P+FN++F  L+  + + +  +  ++W+
Sbjct  356  NVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWG  415

Query  415  KADKGILFKR-------AALLLPSLLIAYFMIRQVMQNDSALQFNLTAYFLFTLAIWLLS  467
            + D+   +++       ++L+L+ LL    ++ + +   +A+   + A  +  LA+    
Sbjct  416  R-DRPRNIRKLLWAAVVTTLVLSVLLP--WLLEDKIIAMTAVGMAM-ACWIAVLAV--AE  469

Query  468  ATLWQNWCKLSVSRY-AMIFAHSGVAIATMGAVMSSYFGSEIGVRLSPQESQTLGQFDFR  526
            A  + ++   +   Y +M+ AH G+A++  G   S  ++ E +VR+ + +S T+ ++ F 
Sbjct  470  AVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  527  YTRFSSEIGPNFTAEVADFHVTANGKPYADLQPERRYYDVRTMTMSEVGLAGGFWGDLYI  586
            +       GPN+ + VA + VT +G P A L++E+R Y+   M M+E ++ GG+  DLY 
Sbjct  530  FREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYA  589

Query  587  VMCDPLGKGEFTFRLHYKPLIRWLW  611
             + + L++G  + RL YKP++RW+W
Sbjct  590  ALGEELDNGAWAVRLYYKPFVRWIW  614

510) ccmF in NC_018290


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  350 bits (1315),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 271/567 (48%), Positives = 400/567 (71%), Gaps = 14/567 (2%)

Query  57   LMWAFITSDFSLRLVALNSHSAKPMLYKISGTWGNHEGSMLLWVLIVSLFGAVASVFGGG  116
            L+ AF+ +DF++  VA NS++  P+ Y++++TWG HEGS+LLWVL++S      +VF+  
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQ  116

Query  117  LPPTLKARVLAVQASIGVAFFAFILFTSNPFLR-LAVPPFDGQGLNPLLQDPGLAFHPPF  175
            +P+ + ARVLAV + +  +F+AFILFTS PF R L+  P +G++LNPLLQDPGL FHPP+
Sbjct  117  VPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPL  176

Query  176  LYLGYVGLSMAFSFAVAALIEGRVDAAWGRWVRPWTLAAWIFLTIGIALGSWWAYYELGW  235
            LY+GYVG+S+AF+FA+AAL+ GR+D+A  R  RPWTLAAW+FLT+GI LGS WAYYELGW
Sbjct  177  LYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGW  236

Query  236  GGFWFWDPVENASFMPWLLAAALLHSAIVVEKREALKSWTILLAILAFGFSLIGTFIVRS  295
            GG WFWDPVENASFMPWL ++ALLHS  V E+R ++K+WT+LL+I AF++ L+GTF+VRS
Sbjct  237  GGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRS  296

Query  296  GLLTSVHAFASDPERGVFILYIlafftggalllfalraqaMQAKGVFGLVSRETALVANN  355
            G+L SVHAFASDP RG+FIL ++ + TGG+LLLFA+R++ ++++   +L SRE+ L++NN
Sbjct  297  GVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNN  356

Query  356  ILLAVSCFVVFFGTLWPVVAEMAFDRKLSVGPPFFNAAFTPFMVVLGAILPVGAMLPWKR  415
            +LL  + +VV++GTL P+V        +SVG PFFN+ FT +MV ++ +L VG+++ W R
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  416  G---LLGRTAWrlrfvfalavalgvlaWAMQTGRSGLGPIGLFIGVWVVVGAFADLWLRG  472
            +    + +  W    V +  V   +L+W ++    ++ ++G+ ++ W+ V A A+     
Sbjct  417  DRPRNIRKLLW--AAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAE-----  469

Query  473  SATGRWQRLLRLPRADWGKALAHAGLGVTIFAIA-GLTAWQDEDIRIAEVNRPFNVGAYT  531
             A  R  R  + + + WG   AH GL+VTI +IA +     + D+R+   + +  +  Y 
Sbjct  470  -AVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGD-SVTIHDYR  527

Query  532  LELQNVRRVQGPNYLSTMADIEVTRAGRFVALLNPEKRDYPVSRMPTTEAAIDYRFLRDL  591
            + +++VR + GPNY + +A I VTR G   A+L++EKR Y  SRM  TEAAID  + RDL
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  592  YVVIGDQQANGGWTVRTYIKPLANWIW  618
            Y  +G++  NG+W+VR Y KP+  WIW
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIW  614

511) PSYCG_09010 in NC_021661


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  348 bits (1307),  Expect = 7e-97, Method: Compositional matrix adjust.
 Identities = 304/624 (49%), Positives = 447/624 (72%), Gaps = 16/624 (2%)

Query  28   GVMRDHVAWQRLAPSLAWAQFAAMITSFGALMAGFYFNDFSLVYVSQHSNTLLPWYYKLS  87
            GV R++      A  +AW  F  +  +F  L+ +F  NDF++ YV+ +SNT LP  Y+++
Sbjct  27   GVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVA  86

Query  88   ATWGGHEGSLLLWMTIMATWCALVSYFSRGLPLSMRARvlvilaavqmmmlamliFTSSP  147
            ATWG+HEGSLLLW+ +M+ W   V+ FSR +P  + ARVL +++ V    LA ++FTS+P
Sbjct  87   ATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGP  146

Query  148  FDRTLPNLPVDGADLNPVLQDFGLIIHPPMLYMGYVGMVVPFAFCMAALWEGRLDAVWTR  207
            F RTLP +PV+G DLNP+LQD GLI+HPP+LYMGYVG  V+FAF +AAL  GRLD+  TR
Sbjct  147  FARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTR  206

Query  208  WSRPWALAAWGFLTIGIALGSWWAYYELGWGGWWFWDPVENasllpwlaglallhslaVT  267
             +RPW+LAAW FLT+GI LGS WAYYELGWGGWWFWDPVENAS++PWLAG ALLHS+AVT
Sbjct  207  FARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVT  266

Query  268  EKRGVFKAWTIMLAIFAFALSLLGTFLVRSGVITSVHSFAADPTRglvilailgiivggg  327
            E+R+ FKAWT++L+I AF+L LLGTFLVRSGV+ SVH+FA+DP+RG+ ILA++ ++ GG+
Sbjct  267  EQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGS  326

Query  328  llMFAVRGWRLTIESQYQLISRESFlvinnviiliatlvvllgtlYPIIADAFNLGQVSV  387
            LL+FAVRG R+    +  L SRES+L+ NNV+++ A LVVLLGTL P++   + LG +SV
Sbjct  327  LLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISV  386

Query  388  GPPYFNALFVPLTWLLM---IAMGMGSNIRWKQDSRPLLGAGM-viaasslvlaaviaYF  443
            G P+FN++F   TWL++   + +G+G+ +RW +D    +   +     ++LVL+ +++ +
Sbjct  387  GEPFFNTMF---TWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWL  443

Query  444  VSPFAMLNIGVTLAVSFWVLFWMVVDFKDKTKNAPSLLKGLAKLRLSYWGQQTAHigvii  503
            +    +   +V +A++ W+    V +  ++   +       +K  LSYWG  +AH+G+ +
Sbjct  444  LEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG-------TKTSLSYWGMVAAHLGLAV  496

Query  504  avigvaFTSTLSIERDVALRIGETVNVQGYDFALTDLRETRGSNFDATQAEVTVTKKGKA  563
            ++ G+AF+   S+ERDV +R G++V +++Y F++ ++R+  G+N+ +  A + VT+ G +
Sbjct  497  TITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEP  556

Query  564  VTILHPEKRTYIISTMPTTEAAINANLMRDLYVALGEPIAEGSNQWAVRIYVKPLIRWIW  623
             ++LH+EKR Y  S M  TEAAI++ L RDLY ALGE + +G+  WAVR+Y KP++RWIW
Sbjct  557  EAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGA--WAVRLYYKPFVRWIW  614

Query  624  lgaiimalggllSMLDRRYRLKTT  647
             G+++MALGGLL + D RYR +  
Sbjct  615  AGGLLMALGGLLCLADPRYRRRKP  638

512) ccmF in NC_019566


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  347 bits (1303),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 268/617 (44%), Positives = 405/617 (66%), Gaps = 23/617 (3%)

Query  3    LVIALVVSVFQTIIPLYGTACQQPRLISFACPAAIVQFTALVLSFGSLINAFVASDFSVA  62
            L +AL V+++ ++ PL G A  ++R+++ A   A + F  +  +F  L++AFV +DF+VA
Sbjct  10   LCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVA  69

Query  63   NVVDNSSSLKPMLYKVAGVWGNHEGSMLLWVLILSFFGASVAIFGANLPEILRARVIAIQ  122
             V +NS++  P+ Y+VA+ WG HEGS+LLWVL++S    +VA+F+ ++P  + ARV+A+ 
Sbjct  70   YVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVM  129

Query  123  GLIGASFLTFIIFTSNPFVRMIPA-PIDGRGLNPLLQDIGLALHPPILYLGYVGLSTTFS  181
            G++ A+FL+FI+FTS PF R +PA P++GR+LNPLLQD GL +HPP+LY+GYVG+S +F+
Sbjct  130  GMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFA  189

Query  182  FAVAALLEGRVSRSWARWVRPWILAAWVALTAGITLGSIWSYYELGWGGWWFWDPVENAS  241
            FA+AALL GR+  + +R  RPW LAAWV LT GI LGS W+YYELGWGGWWFWDPVENAS
Sbjct  190  FAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENAS  249

Query  242  FMPWLVATALLHSVIVLEKRNALKRWTvllalvafafsllGTFLVRSGVLTSVHSFAVDS  301
            FMPWL +TALLHS+ V E+R ++K WT+LL++ AF++ LLGTFLVRSGVL SVH+FA D+
Sbjct  250  FMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDP  309

Query  302  QRGIFMLVLLSVTIVGSLFLYAWRAPAIESSEIFFFISREGALITNNLFMITGATTVLIG  361
             RG+F+L ++ +   GSL+L+A R+  + S     + SRE+ L+ NN++++++   VL+G
Sbjct  310  ARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLG  369

Query  362  TIYPLFLESISGEKISVGPPFFESTFVPLMVPLILAVGVGPFLTWKRDNLVIVVKNVFFA  421
            T+ PL    ++   ISVG PFF++ F  LMVP+ L +GVGP++ W RD    + K +  A
Sbjct  370  TLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAA  429

Query  422  TVCLFMVFVFL-W--GVPIGAM--FGLALAVWLMLSVLTEWAHrvrlfrvslfsslsral  476
             V  +++ V+L W     I AM   G+A+A W+ +  ++E                    
Sbjct  430  VVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAE------------AVQRVSRG  477

Query  477  vlPRSAY-GMSIAHFGLAVFIFGAVGNNFYSTEVVRYASPGEKIKIAGHTLTFQSVNAGK  535
                 +Y GM  AH+GLAV I G   ++ YS E      +G+ + I +  +TF+ V    
Sbjct  478  TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDIT  537

Query  536  GVNYDSYVGKFVM----ENGQVIESERRFFPIEGQQTTEVGLCIRPLGDIYTVLGEAVAR  591
            G NY + V+ + +    E   V+++E+R++       TE ++      D+Y+ LGE +  
Sbjct  538  GPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDN  597

Query  592  NKWTIRIYYNAFVVWIW  608
              W++R+YY++FV WIW
Sbjct  598  GAWAVRLYYKPFVRWIW  614

513) PBPRA1262 in NC_006370


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  347 bits (1303),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 276/644 (43%), Positives = 440/644 (69%), Gaps = 36/644 (5%)

Query  1    MIPEVGHYALILGCVFAVLGGTIPLYGLIKKDPYLIR----YAWPLSYGAFFAISSSIVL  56
            M+PE GH  L L+   A+L +  PL G+ + D+ ++     +AW L    F+ +++++ +
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLL----FICVAGAFFV  56

Query  57   LGYSFAVDDFSVVYIAQHSNSQLPQVFKIAAVWGGHEGSFLFWLFSLAGWSAAVAFVYQY  116
            L  +F V+DF+V Y+A +SN+QLP  +++AA WG+HEGS+L+W++ ++GW+ AVA V+  
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVA-VFSR  115

Query  117  KAPSGVNQPEKQVQHEAFIGRVLVVLSLLIAAFSLFTLFTSNPFLRLLPI-PMEGRDLNP  175
            + P+++            ++RVL V++++ A+F  F LFTS PF R LP  P+EGRDLNP
Sbjct  116  QVPADI------------VARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNP  163

Query  176  MLQDVGLIFHPPMLYLGYVGFAVSFAFAIAALTTSASSELPWAGWSRPWALSAWVFLTGG  235
            +LQD GLIFHPP+LY+GYVGF+V+FA    A   S+  + + +  +RPW+L+AWVFLT G
Sbjct  164  LLQDPGLIFHPPLLYMGYVGFSVAFA-FAIAALLSGRLDSAFTRFARPWTLAAWVFLTLG  222

Query  236  ISLGSWWAYYELGWGGWWFWDPVENASLMPWLTGTALLHSLIMTEKRNALTSWtillsif  295
            I LGS WAYYELGWGGWWFWDPVENAS+MPWL+GTALLHS+ +TE+R ++ +WT+LLSI 
Sbjct  223  IVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSIC  282

Query  296  tfslsllgtfiVRSGVLTSVHAFAVDPTRGvallsilgvvllssltlFALRGGQYIKPVR  355
            +FSL LLGTF+VRSGVL SVHAFA DP+RG+ +L+++ +V  +SL LFA+RG +    V 
Sbjct  283  AFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVN  342

Query  356  FGFLSREAALLAGNSLFAVATLTILLGTFYPMIFQAFGLGNISVGAPYFNSLFVPLSFVI  415
             ++ SRE+ LL+ N L+  A L +LLGT+ P++ + +GLG+ISVG P+FN++F  L   +
Sbjct  343  NALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPF  402

Query  416  FAVMGLAPLIKWKNATSDNFIMRIIAPLSASVVIGVALSVMFERGINLVVCVAFIMALWV  475
              ++G++PL++W    + N+   + A++ +++V++V L+ ++E  I  +  V+  MA W+
Sbjct  403  ALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI  462

Query  476  TLTSLQVFYIVQKSRKHWKFDSQCCRQF-AMVTAHIgvavalvgatlvSYYVEETNNRMG  534
            ++  L V   VQ+  +    +++    + +MV+AH+G+AV++ G ++   Y  E + RM 
Sbjct  463  AV--LAVAEAVQRVSR----GTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMR  516

Query  535  PGSQLVLGDYQFDYQETELLIGPNYTAEQANIAVTRINGVDKNAERIGVIKPQRRHYTVR  594
            +G  + + DY+F ++E   + GPNY +  A I+VTR      ++E  +V+ +++R Y   
Sbjct  517  AGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTR------HGEPEAVLHAEKRLYNTS  570

Query  595  TMNMSEPGIHWFWKGDIYITLGDKINKTDYAVRIQYKPYVRWLW  638
             M M+E++I+     D+Y +LG+ +++   AVR+ YKP+VRW+W
Sbjct  571  RMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

514) ccmF in NC_002928


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  346 bits (1298),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 339/654 (52%), Positives = 464/654 (71%), Gaps = 27/654 (4%)

Query  1    MIPEIGLFSLILALLVAIVQGVLPLVGASTGWQAGLRVARPAAVTQ---FCLVTVAMGCL  57
            M+PE G   L LAL VA++ +V PL G + G   + R+  +A+V     F  V+ A   L
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARG---DARMMASAGVFAWLLFICVAGAFFVL  57

Query  58   AWSFLDNDFSVLYVAGNSHADLPAAYRFAALWGGHEGSlllwlylltawtlavalHSRAL  117
              +F+ NDF+V YVAGNS+++LP  YR AA WG+HEGSLLLW+ L+++WTLAVA+ SR +
Sbjct  58   VHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQV  117

Query  118  PPAFAARVLAVMAWISIGfllfllflSNPFERLMPP-AQAGRDLNPLLQDPGMIVHPPML  176
            P+ + ARVLAVM+ +  GFL F+LF S PF R +P+ +  GRDLNPLLQDPG+I HPP+L
Sbjct  118  PADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLL  177

Query  177  YMGYVGFSVAFAFAIAALLSGELDAIWARWVRPWTLLAWMFLTIGILLGSAWAYYVLGWG  236
            YMGYVGFSVAFAFAIAALLSG LD+  +R  RPWTL AW+FLT+GI+LGSAWAYY LGWG
Sbjct  178  YMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWG  237

Query  237  GWWFWDPVENASFMPWLAGTALIHSLIVTERRGAFRSWTVllaiaafslsilGTFLVRSG  296
            GWWFWDPVENASFMPWLAGTAL+HS+ VTE+R++F++WT+LL+I AFSL +LGTFLVRSG
Sbjct  238  GWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSG  297

Query  297  VLTSVHAFAVDPGRGLYILGFMTLIVGGSLALYAWRAPTVGLGGGFallsreslllsnnv  356
            VL SVHAFA DP+RG++IL+FM L+ GGSL L+A R+  V      AL SRESLLL+NNV
Sbjct  298  VLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNV  357

Query  357  vlaaatgavllgtlYPVALDVLDWGKISIGPPYFEAVFVPLMTPAIFLMGVGPMARWKHS  416
            +L AA   VLLGTL P+    L+ G IS+G P+F+++F  LM P  +L+GVGP+ RW + 
Sbjct  358  LLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRD  417

Query  417  AVPDLAQRLRIAFGVSLATALTVPLAWPGARAWPGSPLIvlglwlaawsvasaaahawQR  476
               ++ + L+ A   +L   L+V L+W           ++ +  +A  +V+ A A     
Sbjct  418  RPRNIRKLLWAAVVTTL--VLSVLLPW-----------LLEDKIIAMTAVGMAMACWIAV  464

Query  477  LADGEGSWARRLRRQPRA----WYGMLLAHAGVGVFIAGVTLANGYEDKQELRMDIGATQ  532
            LA +E+   +R+ R  ++    W GM+ AH G++V I+G+++++ Y   +++RM  G + 
Sbjct  465  LAVAEA--VQRVSRGTKTSLSYW-GMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSV  521

Query  533  AAGGYQFTFAGIAPAAGPNYQAERARFVVTRDGRPVVTLHPEKRHYTVQGMPLSHAAIDT  592
            +  +Y+FTF  +   +GPNY++  A + VTR+G P   LH+EKR Y    M +++AAID 
Sbjct  522  TIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDG  581

Query  593  RFTRDLFVALGEPVGQRAWTVRLQVKPFMAWIWSGCVLMALGGLMAATDRRYRQ  646
             +TRDL+ ALGE +++ AW+VRL  KPF+ WIW+G +LMALGGL+  +D RYR+
Sbjct  582  GLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRR  635

515) cycK in NC_016617


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  346 bits (1299),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 286/587 (49%), Positives = 412/587 (71%), Gaps = 13/587 (2%)

Query  60   AHVVSDFSVSNVVANSHSMKPMLYKVSGVWGNHEGSMMLWIVMLTVFGAAVGIFGRNLPP  119
            A VV+DF+V+ V +NS++  P+ Y+V++ WG HEGS++LW+++++    AV++F+R++P+
Sbjct  60   AFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPA  119

Query  120  SLKARVISVQGMIGVGFLLFILITSNPFLRVVPA-PLDGNDLNPLLQDPGLAFHPPFLYA  178
             + ARV++V GM+  GFL FIL+TS PF R +PA P++G DLNPLLQDPGL FHPP+LY 
Sbjct  120  DIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYM  179

Query  179  GYVGfsvafsfavaaLIEGRVDPAWARWVRPWTLAAWSTLTAGIALGSwwayyelgwggw  238
            GYVGFSVAF+FA+AAL+ GR+D+A +R  RPWTLAAW  LT GI LGS WAYYELGWGGW
Sbjct  180  GYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGW  239

Query  239  wywDPVENASFMPWLAGTALLHSAIVVEKRDALKTWTILLAIITFSLSLMGTFLVRSGIL  298
            W+WDPVENASFMPWLAGTALLHS  V E+R ++K+WT+LL+I +FSL L+GTFLVRSG+L
Sbjct  240  WFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVL  299

Query  299  TSVHAFAVDPARGVFILVLLAIATGGSLLLYSVRAPSLKTGGLFAPVSREGslvlnnlll  358
             SVHAFA DPARG+FIL ++ + TGGSLLL++VR+  +++    A  SRE+ L+ NN+LL
Sbjct  300  VSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLL  359

Query  359  statatvFIGTLYPLFLDVLDLGKVSVGPPFFNATFIPVAIPMVIAMVVGPFLAWKRADL  418
             +A   V++GTL PL    L+LG +SVG PFFN+ F  + +P  + + VGP++ W R   
Sbjct  360  MAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRP  419

Query  419  LGALTRLWTAGVATVACVAIAAYVTNgggpllalvgvalaaWAFFGSIAEFAERIRLFRI  478
                  LW+A V+T+    + + + ++    ++ VG+A+A W    ++AE  +R+     
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV-----  474

Query  479  PAKDSWNRAVNLPRSAWGMTIAHASMGIAIAGMTGTSAWQSETIKAMKPGDNATVGAYAV  538
                  +R+ + + S WGM  AH +++++I+G++ +     E    M++GD+ T+  Y  
Sbjct  475  ------SRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRF  528

Query  539  HFDRVGTVQGPNYSAEQGVFTVTRDGRTIATLTPQRRSYPVTRMTTTEAAIHTTWLSDVY  598
             F  V  + GPNY +  +++ VTR+G   A L +++R Y  +RM  TEAAI+     D+Y
Sbjct  529  TFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLY  588

Query  599  VALGDPTQNGTAWTVRLYHHPLVPWIWIgslgmmlgglvslsDRRFR  645
             ALG+  +NG AW+VRLY  P+V WIW G+L M LGGL+ L+D R+R
Sbjct  589  AALGEELDNG-AWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

516) NT05HA_0041 in NC_012913


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  346 bits (1299),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 239/559 (43%), Positives = 381/559 (69%), Gaps = 9/559 (1%)

Query  59   YSFAADDFTLEYVAAHSNSQLPTFFKIAATWGGHEGSMLFWLFSLSVWVVLFALFNRKND  118
             +F  +DFT+ YVA++SN+QLP  +++AATWG+HEGS+L+W++ +S W +  A+F+R+  
Sbjct  59   HAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVP  118

Query  119  RTFVAQSLVILGLICFSFAVFIVFFSNPYGRIFPA-PLEGRDLNPMLQDVGLIFHPPLLY  177
              +VA+ L ++G++C +F  FI+F S P++R +PA P+EGRDLNP+LQD GLIFHPPLLY
Sbjct  119  ADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLY  178

Query  178  LGYVGFAVNFALSITALLHQHLESQIARVMRVWVLVSWLFLTLGIVLGAWWAYYELGWGG  237
            +GYVGF+V FA++I+ALL  +L+S ++R  R W L +W+FLTLGIVLG+ WAYYELGWGG
Sbjct  179  MGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGG  238

Query  238  WWFWDPVENASLMPWLLGLALLHSLIVSEKRGIFNYWTTlfsllvfafsvlGTFIVRSGA  297
            WWFWDPVENAS+MPWL G ALLHS+ V+E+R+ F+ WT L+S+  F++ +LGTF+VRSG 
Sbjct  239  WWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGV  298

Query  298  LTSVHAFAVDSQRGTALLVIFFLLTVGALGLFAFKANMQQQSVKLKLLSKESAVLFLNVL  357
            L SVHAFA D+ RG  +L +  L+T G+L LFA +++  +  V+  L S+ES +L  NVL
Sbjct  299  LVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVL  358

Query  358  LSIATVSTFLGTFYPMLFQAMNWGSISVGAPYFNCIFI-PLIALVLITMVISLGLYWAKA  416
            L  A +  +LGT+ P++ + +  GSISVG P+FN +F   ++++ L+  V +L + W++ 
Sbjct  359  LMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPL-VRWGRD  417

Query  417  DKRIllkravlllpslllsylAIHHFMQND----SALQFKWTAYFlltlaiwlllatlwQ  472
              R + K     + + L+  + +  ++++     +A+     A  +  LA+   +  + +
Sbjct  418  RPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMA-MACWIAVLAVAEAVQRVSR  476

Query  473  NWRKLGLSHYAMIFAHSGVAIATMGAVMSSYFGSEIGVRLSPQQNQQLGAFNFHYERFSN  532
               K +LS  +M+ AH G+A++  G   S  ++ E +VR+ + ++  +  + F +    +
Sbjct  477  G-TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRD  535

Query  533  EIGPNFTAEVATFSVTENSKPYAELQPERRYYDVRTMTMSEVGLSGGFWGDLYIVMGDPL  592
              GPN+ + VA ++VT ++ P A L++E+R Y+   M M+E ++ GG+  DLY  +G+ L
Sbjct  536  ITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEEL  595

Query  593  GKGKFTFRLHYKPLIRWLW  611
            ++G  + RL YKP++RW+W
Sbjct  596  DNGAWAVRLYYKPFVRWIW  614

517) A11S_1728 in NC_020812


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  346 bits (1298),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 258/574 (45%), Positives = 389/574 (68%), Gaps = 17/574 (2%)

Query  50   IVAAFAALIYSFVVSDFSVALVVNNSHTLKPLLYKIAGTWGNHEGSMVLWVLILA--LFG  107
            + +AF  L+ +FVV+DF+VA V  NS+T  P+ Y++A+TWG HEGS++LWVL+++   ++
Sbjct  50   VAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLA  109

Query  108  ALSLRQTMPDAMRSMVLAVQGMQAVGILAFILFTSNPFTR-LDPAPADGMDLNPLLQDPG  166
               + + +P  + + VLAV GM   G+LAFILFTS PF+R L + P +G DLNPLLQDPG
Sbjct  110  VAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPG  169

Query  167  LAFHPPLLYLGYVGFSIVFSFACAGLLTNAINRDWAALVRPWVLAAWAGLSAGIALGSWW  226
            L FHPPLLY+GYVGFS+ F+FA A+LL+  ++   + + RPW LAAW  L+ GI LGS W
Sbjct  170  LIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAW  229

Query  227  AYYELGWGGFWFWDPVENASLMPWLCGTALLHSIIITRHRGALPRWSVllallaYTFSLL  286
            AYYELGWGG WFWDPVENAS+MPWL GTALLHS+ +T +R+++  W++LL++ A+++ LL
Sbjct  230  AYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLL  289

Query  287  GTFLVRSGVLTSVHAFATDPSRGLFILGLLTVFAGGGFLLYGLRAPDLKSDAGFKPISRE  346
            GTFLVRSGVL SVHAFA+DP+RG+FIL+++ + +GG++LL+++R+  ++S       SRE
Sbjct  290  GTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRE  349

Query  347  SALVVNNLILTAMAATILVGTLYPLILSSLNAGQISVGPPFFNATILPLAVPLILLMGVG  406
            S L+ NN++L A    +L+GTL PL+   L  G ISVG PFFN+ +  L VP+ LL+GVG
Sbjct  350  SLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVG  409

Query  407  PFLAWKKADLNAIREQLVAGALMTATIVGLIIAIQTETSLIVLG--GFALGIWAIVTTLA  464
            P++ W +     IR +L+ +A++T+ +++++++   E  +I +   G A++ W  V ++A
Sbjct  410  PLVRWGRDRPRNIR-KLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVA  468

Query  465  DT--WARRG-KLTLSGWGMRLAHaglgvavigivgttlWKIETAQILKPGEHLTAGRWTV  521
            ++  +  RG K +LS WGM  AH GL+V++ GI  +    +E    +++G+ +T      
Sbjct  469  EAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRF  528

Query  522  TLDSVDAGFGPNYSTIMAHV-TARAGDTSINLSPERRYYPVGGMATTEAAIRTSLRDDIY  580
            T+  V    GPNY   +A +  +R G+    L +E+R Y  + M  TEAAI  +L  D+Y
Sbjct  529  TFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLY  588

Query  581  VVLGQQDTIDKGDGQGNGWIIRATTHPLVALIWG  614
              LG++  +D+G     +W +R    P+V  IW+
Sbjct  589  AALGEE--LDNG-----AWAVRLYYKPFVRWIWA  615

518) JCM7686_2105 in NC_022041


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  345 bits (1297),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 261/549 (48%), Positives = 387/549 (71%), Gaps = 11/549 (2%)

Query  73   ENSHTAKPMLYKVAGVWGNHEGSMLLWVLILALFGAAAATFDPNLPPKLRARALAVQASI  132
             NS+T  P+ Y+VA+ WG HEGS+LLWVL+++    A A F  ++P+ + AR LAV + +
Sbjct  73   GNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMV  132

Query  133  GVAFYAFILFTSNPFWRMSPA-PFNGRDLNPLLQDPGLAFHPPFLYLGYVGLSMAFSFAV  191
              +F AFILFTS PF R  PA P +GRDLNPLLQDPGL FHPP+LY+GYVG+S+AF+FA+
Sbjct  133  CAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAI  192

Query  192  AAMIEGRVDAAWARWVRPWTLSAWVFLTIGIAMGSWWAYYELGWGGFWFWDPVENASFMP  251
            AA++ GR+D+A +R  RPWTL+AWVFLT+GI +GS WAYYELGWGG WFWDPVENASFMP
Sbjct  193  AALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMP  252

Query  252  WLLAAALLHSAIVVEKREVLKSWTILLAIMAFGFSLIGTFIVRSGVITSVHSFANDPKRG  311
            WL ++ALLHS  V E+R  +K+WT+LL+I AF++ L+GTF+VRSGV+ SVH+FA+DP RG
Sbjct  253  WLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARG  312

Query  312  VFILAILAFFVGGaltlyaaraaamqakgmfaPVSREGALVLNNILLAVSAFVVFIGTVW  371
            +FILA++ +  GG+L L+A R+  ++++   A  SRE+ L+ NN+LL  + +VV++GT+ 
Sbjct  313  MFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLL  372

Query  372  PLI-AELVWGRVLSVGTPFFEKAFTPFMVVlaiilpigailpWKRGKIAKTLAPLRGall  430
            PL+  +L  G + SVG PFF+  FT +MV +A++L +G+++ W R++  +    L++A++
Sbjct  373  PLVHKQLGLGSI-SVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVV  431

Query  431  falavatlvf-avSTGKSALAVIGAGLGSWLIAGAAADLWQRTGNSGFARLGRLPRADWG  489
             +L ++ L+   +     A++ +G +++ W+   A A+  QR + +  + L     + WG
Sbjct  432  TTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTSL-----SYWG  486

Query  490  KAVAHAGLGVTFIGVSLLMAWQVE-DIRVAQIGQSFEVDGYEITLDAVNEVPGPNYTATV  548
               AH GL+VT+ G+++     VE D+R+ + G+S  +++Y +T+  V ++ GPNY + V
Sbjct  487  MVAAHLGLAVTITGIAFSQNYSVERDVRM-RAGDSVTIHDYRFTFREVRDITGPNYRGGV  545

Query  549  ATMHVDRGGKRIAVMYPEKRFYPVQAMPTTEAAIQNGVFRDIYLVIGDKQTNGGWAVRSY  608
            A + V R G   AV+ +EKR+Y    M  TEAAI+ G+ RD+Y  +G+   NG+WAVR Y
Sbjct  546  ALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLY  605

Query  609  IKPFASWIW  617
             KPF  WIW
Sbjct  606  YKPFVRWIW  614

519) ccmF1 in NC_007508


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  345 bits (1295),  Expect = 7e-96, Method: Compositional matrix adjust.
 Identities = 309/597 (52%), Positives = 426/597 (72%), Gaps = 23/597 (3%)

Query  37   GVARPAA---VGQAVFVWM-------AFGLLAWSLLSLDFSVGYVAANANIALP-WYYRV  85
            GVAR  A    + +VF W+       AF +L  +++  DF+V+YVA+N+N  LP WY RV
Sbjct  27   GVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWY-RV  85

Query  86   AAVWGAHEGSLLLWIAILATWTVLLAAFSRHLPQHFAARVLAILGLISVGFLAFILLTSN  145
            AA WGAHEGSLLLW+ +++ WT+ +A FSR++P ++ ARVLA++G++  GFLAFIL+TS 
Sbjct  86   AATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSG  145

Query  146  PFGR-LSPIPLDGNELNPVLQDPGMTFHPPVLYTGYvgfsvafafavaallggeleQAWV  204
            PF+R L+++P++G +LNP+LQDPG+ FHPP+LY GYVGFSVAFAFA+AALL+G L+ A  
Sbjct  146  PFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFT  205

Query  205  RWARPWTNVAWACLTAGIVAGSWWAYAELGWGGWWFWDPVENASFMPWLVGTALIHSQAV  264
            R ARPWT  AW  LT GIV GS WAY ELGWGGWWFWDPVENASFMPWL GTAL+HS AV
Sbjct  206  RFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAV  265

Query  265  TEKRGSLRAWTillsilafslsllGTFLVRSGVLTSVHAFAADPRRGLYILIFLVAVVGG  324
            TE+R++++AWT+LLSI AFSL LLGTFLVRSGVL SVHAFA+DP RG++IL F+V V GG
Sbjct  266  TEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGG  325

Query  325  SLLLYALRAPKIASGKPFAAASRETGILIGNllltvaaamvllgtlFPLIADAFALGKVS  384
            SLLL+A+R+ ++ S    A  SRE+ +L  N+LL  A  +VLLGTL+PL+   ++LG +S
Sbjct  326  SLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSIS  385

Query  385  vgppyfgllfpllmlpvvlllpfgpylRWGKAEAAPLKALG-TRAGIAAIACALVGSVFA  443
            VG P+F  +F  LM+P  LLL  GP +RWG+  +  ++ L  +    + +   L+  ++ 
Sbjct  386  VGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLE  445

Query  444  DGQAKaiagmgvaaw-vaagtalyvVKRWRDMPRGRRFPAEMAGMLIahagvavfvagvl  502
            D      A     A  +A  +    V+R   ++RG + +    GM+ AH G+AV ++G+ 
Sbjct  446  DKIIAMTAVGMAMACWIAVLAVAEAVQR---VSRGTKTSLSYWGMVAAHLGLAVTITGIA  502

Query  503  vSESLSVERDVRLSPGQSAQVAGYSFRFDGVQLVDGPNWKAEQGSVQVSRNGQVVAQLHP  562
             S++ SVERDVR+ +G+S  + +Y F F  V+ + GPN ++  + + V+R+G+  A LH+
Sbjct  503  FSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHA  562

Query  563  QKRLYSSER-IQTESAIDPGITRDLYVALGEPLDDEHIENDWTLRLYYKPFIRWIWA  618
            +KRLY++ R + TE+AID G+TRDLY ALGE LD+      W++RLYYKPF+RWIWA
Sbjct  563  EKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDN----GAWAVRLYYKPFVRWIWA  615

520) ccmF in NC_021991


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  345 bits (1294),  Expect = 7e-96, Method: Compositional matrix adjust.
 Identities = 271/625 (44%), Positives = 411/625 (66%), Gaps = 13/625 (2%)

Query  2    LSPELGHYALALACVLAAIQGILPLMGARRRDVRLMALAPGLAIGQLIALLTSFLCLVYA  61
            + PE GH  L LA  +A + ++ PL G  R D R+MA A  +A   +I +  +F+ LV A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  62   AVTDDFSVQNIAANSAVSKPLLYKITGVWGNHEGSILLWALILGLCGAAVAAFGRNLPSA  121
             V +DF+V  +A+NS    P+ Y++++ WG HEGS+LLW L+++    AVA F+R++P+ 
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  122  LRARVIGVLGLVATGFELFCLTTSDPFARIWPA-PMDGQGMNPLLQDPGLAFHPPILYTG  180
            + ARV++V+G+V +GF  F L TS+PFAR  PA P++G+++NPLLQDPGL FHPP+LY G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFAVPFAFAIAALLEGRVDAAWGRWVRPWAVAAWCFLTCGIAMGSWWSYYVLGWGGYW  240
            YVGF+V+FAFAIAALL GR+D+A  R  RPW++AAW FLT GI +GS W+YY LGWGG W
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLIPWLTGTALIHSAIVVEKREALKIWTVLLAIGTFSFSLSGTFLVRSGILN  300
            FWDPVENAS++PWL+GTAL+HS  V E+R ++K WT+LL+I +FS+ L GTFLVRSG+L 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFANDPARGVFILGLLAVVIGGSLALFAYRAPSLTSGGLFAPVSREGALVLNNILLC  360
            SVHAFA+DPARG+FIL+++ +V GGSL LFA R+  + S    A  SRE+ L+ NN+LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  SLCAVVLTGTMYPPFMSLLFDRTISVGKPFFDATTIPLALPLFIFMGFGPMLPWKRAQLW  420
            +   VVL GT+ P     L   +ISVG PFF++    L +P+ +++G GP++ W R + +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  PILQKLWVaavitaiacaiaaFRLSGVLPilcaaaaiwiiastiTDVVERVRLFRAPFAT  480
             I + LW A V T +   + +  L + +  + A +       ++  V E V+        
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQ--------  472

Query  481  SVQRARMLPRAIIGTAIAHIGVGITVLGLS-AMSQAQHKIVEVPIGTTEHLAGYDWTLTN  539
             V R+   + +  G   AH+G+++T+ G++ + + + ++ V +  G +  + +Y  T+ +
Sbjct  473  RVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  540  VKQEPGPNYTAMMGTLEVRRNGHLITVMHPSKRSFNTQNQTTTDVAIHTNLLADLYGVLG  599
            V++  GPNY + ++ + V R+G+  +V+H+ KR +NT     T+ AI+  L  DLY+ LG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  600  DKHGPDNNPTYVLRLHYNPLAPWMW  624
            +     +N +  +RL Y+P+  W+W
Sbjct  593  EEL---DNGAWAVRLYYKPFVRWIW  614

521) cysK in NC_017150


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  344 bits (1292),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 271/625 (44%), Positives = 411/625 (66%), Gaps = 13/625 (2%)

Query  2    LSPELGHYALALACVLAAIQGILPLMGARRRDVRLMALAPGLAIGQLIALLTSFLCLVYA  61
            + PE GH  L LA  +A + ++ PL G  R D R+MA A  +A   +I +  +F+ LV A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  62   AVTDDFSVQNIAANSAVSKPLLYKITGVWGNHEGSILLWALILGLCGAAVAAFGRNLPSA  121
             V +DF+V  +A+NS    P+ Y++++ WG HEGS+LLW L+++    AVA F+R++P+ 
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  122  LRARVIGVLGLVATGFELFCLTTSDPFARIWPA-PMDGQGMNPLLQDPGLAFHPPILYTG  180
            + ARV++V+G+V +GF  F L TS+PFAR  PA P++G+++NPLLQDPGL FHPP+LY G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFAVPFAFAIAALLEGRVDAAWGRWVRPWAVAAWCFLTCGIAMGSWWSYYVLGWGGYW  240
            YVGF+V+FAFAIAALL GR+D+A  R  RPW++AAW FLT GI +GS W+YY LGWGG W
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLIPWLTGTALIHSAIVVEKREALKIWTVLLAIGTFSFSLSGTFLVRSGILN  300
            FWDPVENAS++PWL+GTAL+HS  V E+R ++K WT+LL+I +FS+ L GTFLVRSG+L 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFANDPARGVFILGLLAVVIGGSLALFAYRAPSLTSGGLFAPVSREGALVLNNILLC  360
            SVHAFA+DPARG+FIL+++ +V GGSL LFA R+  + S    A  SRE+ L+ NN+LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  SLCAVVLTGTMYPPFMSLLFDRTISVGKPFFDATTIPLALPLFIFMGFGPMLPWKRAQLW  420
            +   VVL GT+ P     L   +ISVG PFF++    L +P+ +++G GP++ W R + +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  PILQKLWVaavitaiacaiaaFRLSGVLPilcaaaaiwiiastiTDVVERVRLFRAPFAT  480
             I + LW A V T +   + +  L + +  + A +       ++  V E V+        
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQ--------  472

Query  481  SVQRARMLPRAIIGTAIAHIGVGITVLGLS-AMSQAQHKIVEVPIGTTEHLAGYDWTLTN  539
             V R+   + +  G   AH+G+++T+ G++ + + + ++ V +  G +  + +Y  T+ +
Sbjct  473  RVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  540  VKQEPGPNYSAMMGTLEVRRNGHLVTVMHPSKRSFNTQNQTTTDVAIHTNLLADLYGVLG  599
            V++  GPNY + ++ + V R+G+  +V+H+ KR +NT     T+ AI+  L  DLY+ LG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  600  DKHGPDSNPTYVLRLHYNPLAPWMW  624
            +  +   N +  +RL Y+P+  W+W
Sbjct  593  EELD---NGAWAVRLYYKPFVRWIW  614

522) cysK in NC_013209


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  344 bits (1292),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 271/625 (44%), Positives = 411/625 (66%), Gaps = 13/625 (2%)

Query  2    LSPELGHYALALACVLAAIQGILPLMGARRRDVRLMALAPGLAIGQLIALLTSFLCLVYA  61
            + PE GH  L LA  +A + ++ PL G  R D R+MA A  +A   +I +  +F+ LV A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  62   AVTDDFSVQNIAANSAVSKPLLYKITGVWGNHEGSILLWALILGLCGAAVAAFGRNLPSA  121
             V +DF+V  +A+NS    P+ Y++++ WG HEGS+LLW L+++    AVA F+R++P+ 
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  122  LRARVIGVLGLVATGFELFCLTTSDPFARIWPA-PMDGQGMNPLLQDPGLAFHPPILYTG  180
            + ARV++V+G+V +GF  F L TS+PFAR  PA P++G+++NPLLQDPGL FHPP+LY G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFAVPFAFAIAALLEGRVDAAWGRWVRPWAVAAWCFLTCGIAMGSWWSYYVLGWGGYW  240
            YVGF+V+FAFAIAALL GR+D+A  R  RPW++AAW FLT GI +GS W+YY LGWGG W
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLIPWLTGTALIHSAIVVEKREALKIWTVLLAIGTFSFSLSGTFLVRSGILN  300
            FWDPVENAS++PWL+GTAL+HS  V E+R ++K WT+LL+I +FS+ L GTFLVRSG+L 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFANDPARGVFILGLLAVVIGGSLALFAYRAPSLTSGGLFAPVSREGALVLNNILLC  360
            SVHAFA+DPARG+FIL+++ +V GGSL LFA R+  + S    A  SRE+ L+ NN+LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  SLCAVVLTGTMYPPFMSLLFDRTISVGKPFFDATTIPLALPLFIFMGFGPMLPWKRAQLW  420
            +   VVL GT+ P     L   +ISVG PFF++    L +P+ +++G GP++ W R + +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  PILQKLWVaavitaiacaiaaFRLSGVLPilcaaaaiwiiastiTDVVERVRLFRAPFAT  480
             I + LW A V T +   + +  L + +  + A +       ++  V E V+        
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQ--------  472

Query  481  SVQRARMLPRAIIGTAIAHIGVGITVLGLS-AMSQAQHKIVEVPIGTTEHLAGYDWTLTN  539
             V R+   + +  G   AH+G+++T+ G++ + + + ++ V +  G +  + +Y  T+ +
Sbjct  473  RVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  540  VKQEPGPNYSAMMGTLEVRRNGHLVTVMHPSKRSFNTQNQTTTDVAIHTNLLADLYGVLG  599
            V++  GPNY + ++ + V R+G+  +V+H+ KR +NT     T+ AI+  L  DLY+ LG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  600  DKHGPDSNPTYVLRLHYNPLAPWMW  624
            +  +   N +  +RL Y+P+  W+W
Sbjct  593  EELD---NGAWAVRLYYKPFVRWIW  614

523) cysK in NC_017100


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  344 bits (1292),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 271/625 (44%), Positives = 411/625 (66%), Gaps = 13/625 (2%)

Query  2    LSPELGHYALALACVLAAIQGILPLMGARRRDVRLMALAPGLAIGQLIALLTSFLCLVYA  61
            + PE GH  L LA  +A + ++ PL G  R D R+MA A  +A   +I +  +F+ LV A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  62   AVTDDFSVQNIAANSAVSKPLLYKITGVWGNHEGSILLWALILGLCGAAVAAFGRNLPSA  121
             V +DF+V  +A+NS    P+ Y++++ WG HEGS+LLW L+++    AVA F+R++P+ 
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  122  LRARVIGVLGLVATGFELFCLTTSDPFARIWPA-PMDGQGMNPLLQDPGLAFHPPILYTG  180
            + ARV++V+G+V +GF  F L TS+PFAR  PA P++G+++NPLLQDPGL FHPP+LY G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFAVPFAFAIAALLEGRVDAAWGRWVRPWAVAAWCFLTCGIAMGSWWSYYVLGWGGYW  240
            YVGF+V+FAFAIAALL GR+D+A  R  RPW++AAW FLT GI +GS W+YY LGWGG W
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLIPWLTGTALIHSAIVVEKREALKIWTVLLAIGTFSFSLSGTFLVRSGILN  300
            FWDPVENAS++PWL+GTAL+HS  V E+R ++K WT+LL+I +FS+ L GTFLVRSG+L 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFANDPARGVFILGLLAVVIGGSLALFAYRAPSLTSGGLFAPVSREGALVLNNILLC  360
            SVHAFA+DPARG+FIL+++ +V GGSL LFA R+  + S    A  SRE+ L+ NN+LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  SLCAVVLTGTMYPPFMSLLFDRTISVGKPFFDATTIPLALPLFIFMGFGPMLPWKRAQLW  420
            +   VVL GT+ P     L   +ISVG PFF++    L +P+ +++G GP++ W R + +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  PILQKLWVaavitaiacaiaaFRLSGVLPilcaaaaiwiiastiTDVVERVRLFRAPFAT  480
             I + LW A V T +   + +  L + +  + A +       ++  V E V+        
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQ--------  472

Query  481  SVQRARMLPRAIIGTAIAHIGVGITVLGLS-AMSQAQHKIVEVPIGTTEHLAGYDWTLTN  539
             V R+   + +  G   AH+G+++T+ G++ + + + ++ V +  G +  + +Y  T+ +
Sbjct  473  RVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  540  VKQEPGPNYSAMMGTLEVRRNGHLVTVMHPSKRSFNTQNQTTTDVAIHTNLLADLYGVLG  599
            V++  GPNY + ++ + V R+G+  +V+H+ KR +NT     T+ AI+  L  DLY+ LG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  600  DKHGPDSNPTYVLRLHYNPLAPWMW  624
            +  +   N +  +RL Y+P+  W+W
Sbjct  593  EELD---NGAWAVRLYYKPFVRWIW  614

524) cysK in NC_017121


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  344 bits (1292),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 271/625 (44%), Positives = 411/625 (66%), Gaps = 13/625 (2%)

Query  2    LSPELGHYALALACVLAAIQGILPLMGARRRDVRLMALAPGLAIGQLIALLTSFLCLVYA  61
            + PE GH  L LA  +A + ++ PL G  R D R+MA A  +A   +I +  +F+ LV A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  62   AVTDDFSVQNIAANSAVSKPLLYKITGVWGNHEGSILLWALILGLCGAAVAAFGRNLPSA  121
             V +DF+V  +A+NS    P+ Y++++ WG HEGS+LLW L+++    AVA F+R++P+ 
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  122  LRARVIGVLGLVATGFELFCLTTSDPFARIWPA-PMDGQGMNPLLQDPGLAFHPPILYTG  180
            + ARV++V+G+V +GF  F L TS+PFAR  PA P++G+++NPLLQDPGL FHPP+LY G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFAVPFAFAIAALLEGRVDAAWGRWVRPWAVAAWCFLTCGIAMGSWWSYYVLGWGGYW  240
            YVGF+V+FAFAIAALL GR+D+A  R  RPW++AAW FLT GI +GS W+YY LGWGG W
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLIPWLTGTALIHSAIVVEKREALKIWTVLLAIGTFSFSLSGTFLVRSGILN  300
            FWDPVENAS++PWL+GTAL+HS  V E+R ++K WT+LL+I +FS+ L GTFLVRSG+L 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFANDPARGVFILGLLAVVIGGSLALFAYRAPSLTSGGLFAPVSREGALVLNNILLC  360
            SVHAFA+DPARG+FIL+++ +V GGSL LFA R+  + S    A  SRE+ L+ NN+LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  SLCAVVLTGTMYPPFMSLLFDRTISVGKPFFDATTIPLALPLFIFMGFGPMLPWKRAQLW  420
            +   VVL GT+ P     L   +ISVG PFF++    L +P+ +++G GP++ W R + +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  PILQKLWVaavitaiacaiaaFRLSGVLPilcaaaaiwiiastiTDVVERVRLFRAPFAT  480
             I + LW A V T +   + +  L + +  + A +       ++  V E V+        
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQ--------  472

Query  481  SVQRARMLPRAIIGTAIAHIGVGITVLGLS-AMSQAQHKIVEVPIGTTEHLAGYDWTLTN  539
             V R+   + +  G   AH+G+++T+ G++ + + + ++ V +  G +  + +Y  T+ +
Sbjct  473  RVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  540  VKQEPGPNYSAMMGTLEVRRNGHLVTVMHPSKRSFNTQNQTTTDVAIHTNLLADLYGVLG  599
            V++  GPNY + ++ + V R+G+  +V+H+ KR +NT     T+ AI+  L  DLY+ LG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  600  DKHGPDSNPTYVLRLHYNPLAPWMW  624
            +  +   N +  +RL Y+P+  W+W
Sbjct  593  EELD---NGAWAVRLYYKPFVRWIW  614

525) cysK in NC_017108


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  344 bits (1292),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 271/625 (44%), Positives = 411/625 (66%), Gaps = 13/625 (2%)

Query  2    LSPELGHYALALACVLAAIQGILPLMGARRRDVRLMALAPGLAIGQLIALLTSFLCLVYA  61
            + PE GH  L LA  +A + ++ PL G  R D R+MA A  +A   +I +  +F+ LV A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  62   AVTDDFSVQNIAANSAVSKPLLYKITGVWGNHEGSILLWALILGLCGAAVAAFGRNLPSA  121
             V +DF+V  +A+NS    P+ Y++++ WG HEGS+LLW L+++    AVA F+R++P+ 
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  122  LRARVIGVLGLVATGFELFCLTTSDPFARIWPA-PMDGQGMNPLLQDPGLAFHPPILYTG  180
            + ARV++V+G+V +GF  F L TS+PFAR  PA P++G+++NPLLQDPGL FHPP+LY G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFAVPFAFAIAALLEGRVDAAWGRWVRPWAVAAWCFLTCGIAMGSWWSYYVLGWGGYW  240
            YVGF+V+FAFAIAALL GR+D+A  R  RPW++AAW FLT GI +GS W+YY LGWGG W
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLIPWLTGTALIHSAIVVEKREALKIWTVLLAIGTFSFSLSGTFLVRSGILN  300
            FWDPVENAS++PWL+GTAL+HS  V E+R ++K WT+LL+I +FS+ L GTFLVRSG+L 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFANDPARGVFILGLLAVVIGGSLALFAYRAPSLTSGGLFAPVSREGALVLNNILLC  360
            SVHAFA+DPARG+FIL+++ +V GGSL LFA R+  + S    A  SRE+ L+ NN+LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  SLCAVVLTGTMYPPFMSLLFDRTISVGKPFFDATTIPLALPLFIFMGFGPMLPWKRAQLW  420
            +   VVL GT+ P     L   +ISVG PFF++    L +P+ +++G GP++ W R + +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  PILQKLWVaavitaiacaiaaFRLSGVLPilcaaaaiwiiastiTDVVERVRLFRAPFAT  480
             I + LW A V T +   + +  L + +  + A +       ++  V E V+        
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQ--------  472

Query  481  SVQRARMLPRAIIGTAIAHIGVGITVLGLS-AMSQAQHKIVEVPIGTTEHLAGYDWTLTN  539
             V R+   + +  G   AH+G+++T+ G++ + + + ++ V +  G +  + +Y  T+ +
Sbjct  473  RVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  540  VKQEPGPNYSAMMGTLEVRRNGHLVTVMHPSKRSFNTQNQTTTDVAIHTNLLADLYGVLG  599
            V++  GPNY + ++ + V R+G+  +V+H+ KR +NT     T+ AI+  L  DLY+ LG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  600  DKHGPDSNPTYVLRLHYNPLAPWMW  624
            +  +   N +  +RL Y+P+  W+W
Sbjct  593  EELD---NGAWAVRLYYKPFVRWIW  614

526) cysK in NC_017125


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  344 bits (1292),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 271/625 (44%), Positives = 411/625 (66%), Gaps = 13/625 (2%)

Query  2    LSPELGHYALALACVLAAIQGILPLMGARRRDVRLMALAPGLAIGQLIALLTSFLCLVYA  61
            + PE GH  L LA  +A + ++ PL G  R D R+MA A  +A   +I +  +F+ LV A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  62   AVTDDFSVQNIAANSAVSKPLLYKITGVWGNHEGSILLWALILGLCGAAVAAFGRNLPSA  121
             V +DF+V  +A+NS    P+ Y++++ WG HEGS+LLW L+++    AVA F+R++P+ 
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  122  LRARVIGVLGLVATGFELFCLTTSDPFARIWPA-PMDGQGMNPLLQDPGLAFHPPILYTG  180
            + ARV++V+G+V +GF  F L TS+PFAR  PA P++G+++NPLLQDPGL FHPP+LY G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFAVPFAFAIAALLEGRVDAAWGRWVRPWAVAAWCFLTCGIAMGSWWSYYVLGWGGYW  240
            YVGF+V+FAFAIAALL GR+D+A  R  RPW++AAW FLT GI +GS W+YY LGWGG W
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLIPWLTGTALIHSAIVVEKREALKIWTVLLAIGTFSFSLSGTFLVRSGILN  300
            FWDPVENAS++PWL+GTAL+HS  V E+R ++K WT+LL+I +FS+ L GTFLVRSG+L 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFANDPARGVFILGLLAVVIGGSLALFAYRAPSLTSGGLFAPVSREGALVLNNILLC  360
            SVHAFA+DPARG+FIL+++ +V GGSL LFA R+  + S    A  SRE+ L+ NN+LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  SLCAVVLTGTMYPPFMSLLFDRTISVGKPFFDATTIPLALPLFIFMGFGPMLPWKRAQLW  420
            +   VVL GT+ P     L   +ISVG PFF++    L +P+ +++G GP++ W R + +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  PILQKLWVaavitaiacaiaaFRLSGVLPilcaaaaiwiiastiTDVVERVRLFRAPFAT  480
             I + LW A V T +   + +  L + +  + A +       ++  V E V+        
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQ--------  472

Query  481  SVQRARMLPRAIIGTAIAHIGVGITVLGLS-AMSQAQHKIVEVPIGTTEHLAGYDWTLTN  539
             V R+   + +  G   AH+G+++T+ G++ + + + ++ V +  G +  + +Y  T+ +
Sbjct  473  RVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  540  VKQEPGPNYSAMMGTLEVRRNGHLVTVMHPSKRSFNTQNQTTTDVAIHTNLLADLYGVLG  599
            V++  GPNY + ++ + V R+G+  +V+H+ KR +NT     T+ AI+  L  DLY+ LG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  600  DKHGPDSNPTYVLRLHYNPLAPWMW  624
            +  +   N +  +RL Y+P+  W+W
Sbjct  593  EELD---NGAWAVRLYYKPFVRWIW  614

527) cysK in NC_017146


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  344 bits (1292),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 271/625 (44%), Positives = 411/625 (66%), Gaps = 13/625 (2%)

Query  2    LSPELGHYALALACVLAAIQGILPLMGARRRDVRLMALAPGLAIGQLIALLTSFLCLVYA  61
            + PE GH  L LA  +A + ++ PL G  R D R+MA A  +A   +I +  +F+ LV A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  62   AVTDDFSVQNIAANSAVSKPLLYKITGVWGNHEGSILLWALILGLCGAAVAAFGRNLPSA  121
             V +DF+V  +A+NS    P+ Y++++ WG HEGS+LLW L+++    AVA F+R++P+ 
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  122  LRARVIGVLGLVATGFELFCLTTSDPFARIWPA-PMDGQGMNPLLQDPGLAFHPPILYTG  180
            + ARV++V+G+V +GF  F L TS+PFAR  PA P++G+++NPLLQDPGL FHPP+LY G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFAVPFAFAIAALLEGRVDAAWGRWVRPWAVAAWCFLTCGIAMGSWWSYYVLGWGGYW  240
            YVGF+V+FAFAIAALL GR+D+A  R  RPW++AAW FLT GI +GS W+YY LGWGG W
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLIPWLTGTALIHSAIVVEKREALKIWTVLLAIGTFSFSLSGTFLVRSGILN  300
            FWDPVENAS++PWL+GTAL+HS  V E+R ++K WT+LL+I +FS+ L GTFLVRSG+L 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFANDPARGVFILGLLAVVIGGSLALFAYRAPSLTSGGLFAPVSREGALVLNNILLC  360
            SVHAFA+DPARG+FIL+++ +V GGSL LFA R+  + S    A  SRE+ L+ NN+LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  SLCAVVLTGTMYPPFMSLLFDRTISVGKPFFDATTIPLALPLFIFMGFGPMLPWKRAQLW  420
            +   VVL GT+ P     L   +ISVG PFF++    L +P+ +++G GP++ W R + +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  PILQKLWVaavitaiacaiaaFRLSGVLPilcaaaaiwiiastiTDVVERVRLFRAPFAT  480
             I + LW A V T +   + +  L + +  + A +       ++  V E V+        
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQ--------  472

Query  481  SVQRARMLPRAIIGTAIAHIGVGITVLGLS-AMSQAQHKIVEVPIGTTEHLAGYDWTLTN  539
             V R+   + +  G   AH+G+++T+ G++ + + + ++ V +  G +  + +Y  T+ +
Sbjct  473  RVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  540  VKQEPGPNYSAMMGTLEVRRNGHLVTVMHPSKRSFNTQNQTTTDVAIHTNLLADLYGVLG  599
            V++  GPNY + ++ + V R+G+  +V+H+ KR +NT     T+ AI+  L  DLY+ LG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  600  DKHGPDSNPTYVLRLHYNPLAPWMW  624
            +  +   N +  +RL Y+P+  W+W
Sbjct  593  EELD---NGAWAVRLYYKPFVRWIW  614

528) cysK in NC_017111


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  344 bits (1292),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 271/625 (44%), Positives = 411/625 (66%), Gaps = 13/625 (2%)

Query  2    LSPELGHYALALACVLAAIQGILPLMGARRRDVRLMALAPGLAIGQLIALLTSFLCLVYA  61
            + PE GH  L LA  +A + ++ PL G  R D R+MA A  +A   +I +  +F+ LV A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  62   AVTDDFSVQNIAANSAVSKPLLYKITGVWGNHEGSILLWALILGLCGAAVAAFGRNLPSA  121
             V +DF+V  +A+NS    P+ Y++++ WG HEGS+LLW L+++    AVA F+R++P+ 
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  122  LRARVIGVLGLVATGFELFCLTTSDPFARIWPA-PMDGQGMNPLLQDPGLAFHPPILYTG  180
            + ARV++V+G+V +GF  F L TS+PFAR  PA P++G+++NPLLQDPGL FHPP+LY G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFAVPFAFAIAALLEGRVDAAWGRWVRPWAVAAWCFLTCGIAMGSWWSYYVLGWGGYW  240
            YVGF+V+FAFAIAALL GR+D+A  R  RPW++AAW FLT GI +GS W+YY LGWGG W
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASLIPWLTGTALIHSAIVVEKREALKIWTVLLAIGTFSFSLSGTFLVRSGILN  300
            FWDPVENAS++PWL+GTAL+HS  V E+R ++K WT+LL+I +FS+ L GTFLVRSG+L 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFANDPARGVFILGLLAVVIGGSLALFAYRAPSLTSGGLFAPVSREGALVLNNILLC  360
            SVHAFA+DPARG+FIL+++ +V GGSL LFA R+  + S    A  SRE+ L+ NN+LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  SLCAVVLTGTMYPPFMSLLFDRTISVGKPFFDATTIPLALPLFIFMGFGPMLPWKRAQLW  420
            +   VVL GT+ P     L   +ISVG PFF++    L +P+ +++G GP++ W R + +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  PILQKLWVaavitaiacaiaaFRLSGVLPilcaaaaiwiiastiTDVVERVRLFRAPFAT  480
             I + LW A V T +   + +  L + +  + A +       ++  V E V+        
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQ--------  472

Query  481  SVQRARMLPRAIIGTAIAHIGVGITVLGLS-AMSQAQHKIVEVPIGTTEHLAGYDWTLTN  539
             V R+   + +  G   AH+G+++T+ G++ + + + ++ V +  G +  + +Y  T+ +
Sbjct  473  RVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  540  VKQEPGPNYSAMMGTLEVRRNGHLVTVMHPSKRSFNTQNQTTTDVAIHTNLLADLYGVLG  599
            V++  GPNY + ++ + V R+G+  +V+H+ KR +NT     T+ AI+  L  DLY+ LG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  600  DKHGPDSNPTYVLRLHYNPLAPWMW  624
            +  +   N +  +RL Y+P+  W+W
Sbjct  593  EELD---NGAWAVRLYYKPFVRWIW  614

529) Oant_2669 in NC_009667


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  343 bits (1288),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 288/630 (46%), Positives = 429/630 (69%), Gaps = 22/630 (3%)

Query  1    MSVEIGHFALVLALALSIVQSIVPVVGAHRRDTQLMSVAAPTAIAVFALICLASA--VLV  58
            M  E GH  L LAL+++++ S+ P+ G  R D+++M+ A+  A  +F  IC+A+A  VLV
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLF--ICVAGAFFVLV  58

Query  59   HAYVVSDFSVLNVVENSHSQKPLLYKITGVWGNHEGSMLLWVFILTFFSALVAAFSGNLP  118
            HA+VV+DF+V  V  NS++Q P+ Y++++ WG HEGS+LLWV++++  +  VA FS ++P
Sbjct  59   HAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVP  118

Query  119  ETLRANVLAVQGWIGVAFLAFIVFTSNPFTRIFPA-PMEGGDLNPILQDIGLAIHPPLLY  177
              + A VLAV G +  +FLAFI+FTS PF+R +PA P+EG DLNP+LQD GL +HPPLLY
Sbjct  119  ADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLY  178

Query  178  LGYVGFSVCFSFAVAALLEGRLDAAWARWVRPWALVAWMFLTGGIAMGSYWAYYELGWGG  237
            +GYVGFSV F+FA+AALL GRLD+A +R  RPW+L AW+FLT GI +GS WAYYELGWGG
Sbjct  179  MGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGG  238

Query  238  WWFWDPVENASFMPWLVGTALLHSALVMEKRSALKIWTVllailtfslsllgtflVRSGV  297
            WWFWDPVENASFMPWL GTALLHS  V E+R+++K WT+LL+I +FSL LLGTFLVRSGV
Sbjct  239  WWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGV  298

Query  298  LTSVHSFATDPGRglfilailaifiggSLSLFAFRVQSLTAGGIFHPISREGALVFNNLF  357
            L SVH+FA+DP+RG+FILA++ +  GGSL LFA R + + +       SRE+ L+ NN++
Sbjct  299  LVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVL  358

Query  358  LTTAAATVLIGTLYPLLLEVMTGDKISVGAPFFNMTFGPLMIPLLFAVPFGPLLAWKRGD  417
            L +A   VL+GTL PL+   +  + ISVG PFFN  F  LM+P+ + +  GPL+ W R+ 
Sbjct  359  LMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR  418

Query  418  LYGVSQRLMTAFALSLLAAAIVLWSTSAKSV-LAACGTGLAVWLIFGSLTDLVLKSGIGK  476
               + + L +A   +L+ + ++ W    K + ++A G ++A W     ++ L +  ++ +
Sbjct  419  PRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACW-----IAVLAVAEAVQR  473

Query  477  VSAGKAVARFKGLPRSVFGTALAHIGLGVTLLGIVSVTTFGTENVLIMRPGDTAKVQNYT  536
            VS G   +       S  G   AH+GL+VT+ GI     ++ E  + MR+GD+  +++Y 
Sbjct  474  VSRGTKTS------LSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  537  LRFDGLRPLTGSNFTENRGTFTLLDSSSRSLGQ--IEPSKRFFPARQMPTTESGIKTLWF  594
            + F  +R +TG+N+   RG  +L++ + ++  +  +++ KR++ + +M  TE++I     
Sbjct  528  FTFREVRDITGPNY---RGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLT  584

Query  595  SQVYVALGDEPGDGSAVVRIWWKPDVTLIW  624
             ++Y ALG+E ++G+  VR+  KP V  IW
Sbjct  585  RDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

530) ccmF in NC_018829


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  343 bits (1287),  Expect = 3e-95, Method: Compositional matrix adjust.
 Identities = 327/634 (52%), Positives = 448/634 (71%), Gaps = 27/634 (4%)

Query  1    MIPEIGLFSLILALLVAIVQGVLPLVGASTGWQAGLRVARPAAVTQ---FCLVTVAMGCL  57
            M+PE G   L LAL VA++ +V PL G + G   + R+  +A+V     F  V+ A   L
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARG---DARMMASAGVFAWLLFICVAGAFFVL  57

Query  58   AWSFLDNDFSVLYVAGNSHADLPAAYRFAALWGGHEGSlllwlylltawtlavalHSRAL  117
              +F+ NDF+V YVAGNS+++LP  YR AA WG+HEGSLLLW+ L+++WTLAVA+ SR +
Sbjct  58   VHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQV  117

Query  118  PPAFAARVLAVMAWISIGfllfllflSNPFERLMPP-AQAGRDLNPLLQDPGMIVHPPML  176
            P+ + ARVLAVM+ +  GFL F+LF S PF R +P+ +  GRDLNPLLQDPG+I HPP+L
Sbjct  118  PADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLL  177

Query  177  YMGYVGFSVAFAFAIAALLSGELDAIWARWVRPWTLLAWMFLTIGILLGSAWAYYVLGWG  236
            YMGYVGFSVAFAFAIAALLSG LD+  +R  RPWTL AW+FLT+GI+LGSAWAYY LGWG
Sbjct  178  YMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWG  237

Query  237  GWWFWDPVENASFMPWLAGTALIHSLIVTERRGAFRSWTVllaiaafslsilGTFLVRSG  296
            GWWFWDPVENASFMPWLAGTAL+HS+ VTE+R++F++WT+LL+I AFSL +LGTFLVRSG
Sbjct  238  GWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSG  297

Query  297  VLTSVHAFAVDPGRGLYILGFMTLIVGGSLALYAWRAPTVGLGGGFallsreslllsnnv  356
            VL SVHAFA DP+RG++IL+FM L+ GGSL L+A R+  V      AL SRESLLL+NNV
Sbjct  298  VLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNV  357

Query  357  vlaaatgavllgtlYPVALDVLDWGKISIGPPYFEAVFVPLMTPAIFLMGVGPMARWKHS  416
            +L AA   VLLGTL P+    L+ G IS+G P+F+++F  LM P  +L+GVGP+ RW + 
Sbjct  358  LLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRD  417

Query  417  AVPDLAQRLRIAFGVSLATALAVPLAWPGARAWPGSPLIvlglwlaawsvasaaahawQR  476
               ++ + L+ A   +L   L+V L+W           ++ +  +A  +V+ A A     
Sbjct  418  RPRNIRKLLWAAVVTTL--VLSVLLPW-----------LLEDKIIAMTAVGMAMACWIAV  464

Query  477  LADGEGAWARRLRRQPRA----WYGMLLAHAGVGVFIAGVTLANGYEDKQELRMDIGATQ  532
            LA +E+   +R+ R  ++    W GM+ AH G++V I+G+++++ Y   +++RM  G + 
Sbjct  465  LAVAEA--VQRVSRGTKTSLSYW-GMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSV  521

Query  533  AAGGYQFTFAGIAPAAGPNYQAERARFVVTRDGRPVVTLHPEKRHYTVQGMPLSHAAIDT  592
            +  +Y+FTF  +   +GPNY++  A + VTR+G P   LH+EKR Y    M +++AAID 
Sbjct  522  TIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDG  581

Query  593  RFTRDLFVALGEPVGERAWTVRLQVKPFMAWIWS  626
             +TRDL+ ALGE +++ AW+VRL  KPF+ WIW+
Sbjct  582  GLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

531) ccmF in NC_002927


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  343 bits (1287),  Expect = 3e-95, Method: Compositional matrix adjust.
 Identities = 327/634 (52%), Positives = 448/634 (71%), Gaps = 27/634 (4%)

Query  1    MIPEIGLFSLILALLVAIVQGVLPLVGASTGWQAGLRVARPAAVTQ---FCLVTVAMGCL  57
            M+PE G   L LAL VA++ +V PL G + G   + R+  +A+V     F  V+ A   L
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARG---DARMMASAGVFAWLLFICVAGAFFVL  57

Query  58   AWSFLDNDFSVLYVAGNSHADLPAAYRFAALWGGHEGSlllwlylltawtlavalHSRAL  117
              +F+ NDF+V YVAGNS+++LP  YR AA WG+HEGSLLLW+ L+++WTLAVA+ SR +
Sbjct  58   VHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQV  117

Query  118  PPAFAARVLAVMAWISIGfllfllflSNPFERLMPP-AQAGRDLNPLLQDPGMIVHPPML  176
            P+ + ARVLAVM+ +  GFL F+LF S PF R +P+ +  GRDLNPLLQDPG+I HPP+L
Sbjct  118  PADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLL  177

Query  177  YMGYVGFSVAFAFAIAALLSGELDAIWARWVRPWTLLAWMFLTIGILLGSAWAYYVLGWG  236
            YMGYVGFSVAFAFAIAALLSG LD+  +R  RPWTL AW+FLT+GI+LGSAWAYY LGWG
Sbjct  178  YMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWG  237

Query  237  GWWFWDPVENASFMPWLAGTALIHSLIVTERRGAFRSWTVllaiaafslsilGTFLVRSG  296
            GWWFWDPVENASFMPWLAGTAL+HS+ VTE+R++F++WT+LL+I AFSL +LGTFLVRSG
Sbjct  238  GWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSG  297

Query  297  VLTSVHAFAVDPGRGLYILGFMTLIVGGSLALYAWRAPTVGLGGGFallsreslllsnnv  356
            VL SVHAFA DP+RG++IL+FM L+ GGSL L+A R+  V      AL SRESLLL+NNV
Sbjct  298  VLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNV  357

Query  357  vlaaatgavllgtlYPVALDVLDWGKISIGPPYFEAVFVPLMTPAIFLMGVGPMARWKHS  416
            +L AA   VLLGTL P+    L+ G IS+G P+F+++F  LM P  +L+GVGP+ RW + 
Sbjct  358  LLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRD  417

Query  417  AVPDLAQRLRIAFGVSLATALAVPLAWPGARAWPGSPLIvlglwlaawsvasaaahawQR  476
               ++ + L+ A   +L   L+V L+W           ++ +  +A  +V+ A A     
Sbjct  418  RPRNIRKLLWAAVVTTL--VLSVLLPW-----------LLEDKIIAMTAVGMAMACWIAV  464

Query  477  LADGEGSWARRLRRQPRA----WYGMLLAHAGVGVFIAGVTLANGYEDKQELRMDIGATQ  532
            LA +E+   +R+ R  ++    W GM+ AH G++V I+G+++++ Y   +++RM  G + 
Sbjct  465  LAVAEA--VQRVSRGTKTSLSYW-GMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSV  521

Query  533  AAGGYQFTFAGIAPAAGPNYQAERARFVVTRDGRPVVTLHPEKRHYTVQGMPLSHAAIDT  592
            +  +Y+FTF  +   +GPNY++  A + VTR+G P   LH+EKR Y    M +++AAID 
Sbjct  522  TIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDG  581

Query  593  RFTRDLFVALGEPVGERAWTVRLQVKPFMAWIWS  626
             +TRDL+ ALGE +++ AW+VRL  KPF+ WIW+
Sbjct  582  GLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

532) ccmF in NC_018828


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  343 bits (1287),  Expect = 3e-95, Method: Compositional matrix adjust.
 Identities = 327/634 (52%), Positives = 448/634 (71%), Gaps = 27/634 (4%)

Query  1    MIPEIGLFSLILALLVAIVQGVLPLVGASTGWQAGLRVARPAAVTQ---FCLVTVAMGCL  57
            M+PE G   L LAL VA++ +V PL G + G   + R+  +A+V     F  V+ A   L
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARG---DARMMASAGVFAWLLFICVAGAFFVL  57

Query  58   AWSFLDNDFSVLYVAGNSHADLPAAYRFAALWGGHEGSlllwlylltawtlavalHSRAL  117
              +F+ NDF+V YVAGNS+++LP  YR AA WG+HEGSLLLW+ L+++WTLAVA+ SR +
Sbjct  58   VHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQV  117

Query  118  PPAFAARVLAVMAWISIGfllfllflSNPFERLMPP-AQAGRDLNPLLQDPGMIVHPPML  176
            P+ + ARVLAVM+ +  GFL F+LF S PF R +P+ +  GRDLNPLLQDPG+I HPP+L
Sbjct  118  PADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLL  177

Query  177  YMGYVGFSVAFAFAIAALLSGELDAIWARWVRPWTLLAWMFLTIGILLGSAWAYYVLGWG  236
            YMGYVGFSVAFAFAIAALLSG LD+  +R  RPWTL AW+FLT+GI+LGSAWAYY LGWG
Sbjct  178  YMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWG  237

Query  237  GWWFWDPVENASFMPWLAGTALIHSLIVTERRGAFRSWTVllaiaafslsilGTFLVRSG  296
            GWWFWDPVENASFMPWLAGTAL+HS+ VTE+R++F++WT+LL+I AFSL +LGTFLVRSG
Sbjct  238  GWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSG  297

Query  297  VLTSVHAFAVDPGRGLYILGFMTLIVGGSLALYAWRAPTVGLGGGFallsreslllsnnv  356
            VL SVHAFA DP+RG++IL+FM L+ GGSL L+A R+  V      AL SRESLLL+NNV
Sbjct  298  VLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNV  357

Query  357  vlaaatgavllgtlYPVALDVLDWGKISIGPPYFEAVFVPLMTPAIFLMGVGPMARWKHS  416
            +L AA   VLLGTL P+    L+ G IS+G P+F+++F  LM P  +L+GVGP+ RW + 
Sbjct  358  LLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRD  417

Query  417  AVPDLAQRLRIAFGVSLATALAVPLAWPGARAWPGSPLIvlglwlaawsvasaaahawQR  476
               ++ + L+ A   +L   L+V L+W           ++ +  +A  +V+ A A     
Sbjct  418  RPRNIRKLLWAAVVTTL--VLSVLLPW-----------LLEDKIIAMTAVGMAMACWIAV  464

Query  477  LADGEGSWARRLRRQPRA----WYGMLLAHAGVGVFIAGVTLANGYEDKQELRMDIGATQ  532
            LA +E+   +R+ R  ++    W GM+ AH G++V I+G+++++ Y   +++RM  G + 
Sbjct  465  LAVAEA--VQRVSRGTKTSLSYW-GMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSV  521

Query  533  AAGGYQFTFAGIAPAAGPNYQAERARFVVTRDGRPVVTLHPEKRHYTVQGMPLSHAAIDT  592
            +  +Y+FTF  +   +GPNY++  A + VTR+G P   LH+EKR Y    M +++AAID 
Sbjct  522  TIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDG  581

Query  593  RFTRDLFVALGEPVGERAWTVRLQVKPFMAWIWS  626
             +TRDL+ ALGE +++ AW+VRL  KPF+ WIW+
Sbjct  582  GLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

533) Spea_0478 in NC_009901


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  343 bits (1287),  Expect = 3e-95, Method: Compositional matrix adjust.
 Identities = 262/620 (43%), Positives = 425/620 (69%), Gaps = 13/620 (2%)

Query  1    MIPELGLIFLIISTVTAVLLAFIPLYASYTKNHYLFSYVKTLTALMTVTISASILCLLVS  60
            M+PE G  +L ++   A+LL+  PL +    +  + +    ++ L+ + ++++++ L+ +
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FLLDDFSVAYVANHSNTQLAILYKVAAVWGSHEGSMLFWVVSIAIWG-CLIVFSSRYQDP  119
            F+++DF+VAYVA +SNTQL++ Y+VAA WG+HEGS+L+WV+ ++ W   + VFS +    
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  120  LFIGRMIAILAFVIAGFNLFMLFTSNPFARLLPNFPIEGRDLNPILQDIGLIFHPPMLFL  179
            + ++R++A+++ V AGF  F+LFTS PFAR LP FP+EGRDLNP+LQD GLIFHPP+L++
Sbjct  121  I-VARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYM  179

Query  180  GYVGLTVTFAAAIAALLGGKFTQQHAGYLRPWVLMAWVFLTGGNAFGSWWAYNELGWGGW  239
            GYVG++V+FA AIAALL+G++    + + RPW L AWVFLT G  +GS WAY ELGWGGW
Sbjct  180  GYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGW  239

Query  240  WFWDPVENASFIPWLVATALLHSVVLSQQRSsfkittlllcllafslsllgtflVRSGIV  299
            WFWDPVENASF+PWL +TALLHS+ +++QR++FK  TLLL + AFSL LLGTFLVRSG++
Sbjct  240  WFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVL  299

Query  300  QSVHAFASDPTRGMSILFLLGVFVCGALTLFALKAHLIKSKSDFALVSRDSVMLLGNIVL  359
             SVHAFASDP+RGM IL ++ +   G+L LFA+++H ++S+ + AL SR+S++L  N++L
Sbjct  300  VSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLL  359

Query  360  IVAAISVLLGTFYPLLFELLNLGTLSVGAPYFNSIFVPLTFVAVLLMGAAPLIKCQQSSH  419
            + A + VLLGT+ PL+   L LG++SVG P+FN++F  L     LL+G +PL++  +   
Sbjct  360  MAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRP  419

Query  420  Rlylla--glfaaaaSIGVLVA--LQTR-GGFNPWVWMGATSASWI-LLTLGYLMFNLRQ  473
            R       +   ++  ++VL++  L+ +  +  +   +G + A WI +L+++  +  + +
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTA---VGMAMACWIAVLAVAEAVQRVSR  476

Query  474  QGLAVIANKSAMLIAHLGVAVTIIGATAVSNFETEELLRMGPGQGKVVAGYTFVYEDTVD  533
               + ++   +M+ AHLG+AVTI G +   N+  E  +RM +G++  + +Y F + +  D
Sbjct  477  GTKTSLSY-WGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRD  535

Query  534  VESSSYTAIQANIRVTDVDDKFIGYITPQRQTFKTNAMETTQAGIMRNLVRDLYVSSGQQ  593
            + +++Y +  A I VT  ++   + + ++++ ++T+ M  T+A+I   L RDLY + G++
Sbjct  536  ITGPNYRGGVALIGVTRHGEP-EAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  594  LSETEYLVRISHKPLACWIW  613
            L +    VR+  KP+  WIW
Sbjct  595  LDNGAWAVRLYYKPFVRWIW  614

534) Mmar10_1659 in NC_008347


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  342 bits (1285),  Expect = 4e-95, Method: Compositional matrix adjust.
 Identities = 261/627 (42%), Positives = 422/627 (68%), Gaps = 17/627 (2%)

Query  1    MIAELGQFALILAFVVALFQSLALFAGLRTRDAVVHGFARAGAIA--QFVLVLAAFACLT  58
            M++E G+  L LA+ VAL+  L++++      +  +  A AG +A   F+ V +AF  L 
Sbjct  1    MMPEYGHALLCLALGVALL--LSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLV  58

Query  59   VLFATSDFTALVVAENSHTDKPMLYKITGVWGNHEGSMLLWGLILTGYTAALAWSAKPVE  118
              F  +DFT   VA NS+T+ P+ Y++++ WG HEGS+LLW L+++G T A+A  ++ V 
Sbjct  59   HAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVP  118

Query  119  ARLISLTFAVQSLITAAFTAFLLFTSNPFARLWPG-PENGQDLNPLLQDPGLASHPPMLY  177
            A +++  +AV +++ A+F AF+LFTS PFAR  P+ P +G+DLNPLLQDPGL  HPP+LY
Sbjct  119  ADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLY  178

Query  178  AGYVGFSITFSFAVAALIDGRVDARWARIVRPWALTAWTFLTIGIALGASWAYYELGWGG  237
             GYVGFS++F+FA+AAL+ GR+D+  +R+ RPW+L+AW FLT+GI LG++WAYYELGWGG
Sbjct  179  MGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGG  238

Query  238  WWAWDPVENASLMPWLAGTAFIHSLRVMEKRDTLKAWTILLALMTFALSMAGTFLVRSGI  297
            WW WDPVENAS+MPWLAGTA++HS+ V E+R  +KAWT+LL++ +F+L + GTFLVRSG+
Sbjct  239  WWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGV  298

Query  298  ITSVHAFAVDPERGVFILAILVALIGGSLLIYGLRAGLLKPTGVFSAVSRESlllinnlv  357
            + SVHAFA DP RG+FILA++V + GGSLL++++R+  +++    +  SRESLLL NN++
Sbjct  299  LVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVL  358

Query  358  laaaCGLVFFGTFYPLFITTVSNETVTVGAPFYNNTFNPMLGALLVLVPISGLLAWKRGK  417
            L AA  +V++GT+ PL    ++  +++VG PF+N  F  ++ ++ +L+ ++ L+ W R++
Sbjct  359  LMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR  418

Query  418  LMPVLRDl-apaaiaaiaggvaalwiaDRgliagalgtalaVWVAVGVVIDLAKRFKLGE  476
               + + L A+   + + + + +  + D+ +   A+G A+A W+AV  V +  +R     
Sbjct  419  PRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQR-----  473

Query  477  IAFAASLARMARLPLGIWGMAVAHFGLAVVVFAITGVSAWKQETSAFLMPGQHLDIRQLT  536
                  ++R ++ +L+ WGM  AH+GLAV + +I+       E    + +G+ + I++  
Sbjct  474  ------VSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  537  ITLDRVEQVEGRNYVAERGYLTARRDQQVVSQLTAERRLYPVRGMSTTESAIHARATGDL  596
            +T+  V ++ G NY +  + +   R+ +  + L AE+RLY    M  TE+AI++  T DL
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  597  YVTIGQPSPEHGWPVHVYLYPFAMWLW  623
            Y ++G+   + +W+V++Y  PF  W+W
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIW  614

535) PSE_2481 in NC_016642


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  342 bits (1283),  Expect = 5e-95, Method: Compositional matrix adjust.
 Identities = 262/606 (44%), Positives = 405/606 (67%), Gaps = 13/606 (2%)

Query  21   SVFPVWGAVKSDHRLMGMAPGLAVIMFLLTCVSFGALTWAYLTSDFSLLNTYQNSHSDKP  80
            SV+P+WG  ++D R+M+ A  +A ++F+    +F  L  A++ +DF++     NS+++ P
Sbjct  21   SVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLP  80

Query  81   LIYKISGVWGNHEGSILLWVLILVLFGALVAVFSSNIPQRLRAATLGAQGWVSFAFLLFV  140
            + Y++++ WG HEGS+LLWVL++      VAVFS ++P  + A  L+  G V  +FL F+
Sbjct  81   VWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFI  140

Query  141  IVASNPFQRISPA-PMQGSGLNPMLQDVGLAIHPPILYVGYVGFSIVfafaaaaLILGKL  199
            + +S PF R  PA P++G +LNP+LQD GL +HPP+LY+GYVGFS+ FAFA AAL+ G+L
Sbjct  141  LFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRL  200

Query  200  DAAWARWVRPWILVSWIFLTLGIAMGSYWAYYELGWGGWWFWDPVENASFMPWLTGTALL  259
            D+A +R  RPW L +W+FLTLGI +GS WAYYELGWGGWWFWDPVENASFMPWL+GTALL
Sbjct  201  DSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALL  260

Query  260  HSAIVMERRDALKVWtvflalltfslsllgtflvRSGVLTSVHAFAVDPARGLFILAILL  319
            HS  V E+R ++K WT++L++ +FSL LLGTFLVRSGVL SVHAFA DPARG+FILA+++
Sbjct  261  HSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMV  320

Query  320  IFVGGSLTLFAWRAPLLRQGGLFAPISREGSLVLNNLFLTTACAAVFVGTLYPLVLEAFS  379
            +  GGSL LFA R+  +R     A  SRE+ L+ NN++L +A   V++GTL PLV   ++
Sbjct  321  LVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLG  380

Query  380  GDKISVGAPFFNLTFGPIMIPVLILMPFGQLLAWKRGDAWGVSQRLTTAFVLSILATVGL  439
             + ISVG PFFN  F  +M+P  +L+  G L+ W R+ ++ + + L +A V +++ +V L
Sbjct  381  LGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLL  440

Query  440  VWFMGASTTSIMTAFGFGLAFWAIFGSLWEIVDRSQLFKIGLGRAMSRIKGFTPTVWSTV  499
             W++     + MTA G ++A W    ++ E V+R       ++R+     ++    W+ V
Sbjct  441  PWLLEDKIIA-MTAVGMAMACWIAVLAVAEAVQR-------VSRGTKTSLSY----WGMV  488

Query  500  LGHAGLGVTVLGIVTTLAFESEHVEVMHPGETLEQNGYHITYEKSWTQDGPNYQELVSRY  559
             +H GL+VT+ GI  +  +  E+   M++G+++  ++Y++T+   +   GPNY+  V+  
Sbjct  489  AAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALI  548

Query  560  TLRNGDTVVGVMEPSKRAYVASGMPMSETSIATFGFSQVYFATGDSDENGGIVTRIYFKP  619
             +   +   +V+++ KR Y +S M M+E++I      ++Y A G+  +NG+   R+Y+KP
Sbjct  549  GVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKP  608

Query  620  LITLIW  625
            ++  IW
Sbjct  609  FVRWIW  614

536) SL003B_2907 in NC_015259


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  341 bits (1279),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 281/602 (47%), Positives = 396/602 (66%), Gaps = 13/602 (2%)

Query  24   PIWGATTGDRRLMDVAAPVANMMFLLLAVSFGALTWAYLASDFSVANVWENSHSAKPLIY  83
            P+WG + GD R+M  A+  A ++F+ +A +F  L  A++ +DF+VA V  NS++  P+ Y
Sbjct  24   PLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWY  83

Query  84   KISGVWGNHEGSMLLWVLILTLFGALVGLFGTNIPAPLRAASLGVQGWITaafllfllaa  143
            ++++ WG HEGS+LLWVL+++     V++F+ ++PA + A  L+V G + A+FL F+L +
Sbjct  84   RVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFT  143

Query  144  SNPFARIARP-PLEGNDLNPILQDIGLAIHPPLLYLGYVGFSITFSFAVAALILGRIDAA  202
            S PFAR   + P+EG DLNP+LQD GL +HPPLLY+GYVGFS++F+FA+AAL+ GR+D+A
Sbjct  144  SGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSA  203

Query  203  WARWVRPWTLLAWVFLTLGIAMGSYWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSA  262
             +R  RPWTL AWVFLTLGI +GS WAYYELGWGGWWFWDPVENASFMPWLAGTALLHS 
Sbjct  204  FTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSM  263

Query  263  IVMEKREALKVWTVLLAIftfslsllgtflVRSGVLTSVHAFAVDPARGVFILAILCLFI  322
             V E+R ++K WT+LL+I +FSL LLGTFLVRSGVL SVHAFA DPARG+FILA++ L  
Sbjct  264  AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVT  323

Query  323  GGSLALYAWRAPLLKQGGLFAPISREGALVLNNLFLSAACAAVFVGTLYPLALEAVTGEK  382
            GGSL L+A R+  ++     A  SRE+ L+ NN++L AA   V++GTL PL    +    
Sbjct  324  GGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGS  383

Query  383  ISVGAPFFNLTFGPLMVPLLIAVPFGPLLAWKRGDLLAAAERLYAVFGVAILAAVFVFWL  442
            ISVG PFFN  F  LMVP+ + +  GPL+ W R+        L A    +++ +V++ WL
Sbjct  384  ISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWL  443

Query  443  WGMERV-LAPLGVGLAVWVMAGAVAELVTRSRITEvglgrglvrlaglPRSAFGTMLGHF  501
                 + ++++G+++A W+   AVAE V R                    S  G + +H+
Sbjct  444  LEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTSL-----------SYWGMVAAHL  492

Query  502  GLGMTALGIVTASAFQVEHVQTMRPGDMVEVSGYQVTFDGAAPRQGPNYTEQVGHFTVRS  561
            GL++T  GI  +  + VE+   MR+GD V + +Y+ TF       GPNY   V+ + V  
Sbjct  493  GLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTR  552

Query  562  GGIEVAKLDPSKRVYTARGMPTTEAAIKTFGFSQLYLSLGEGREDGGMDVRVYHKPLITL  621
             G   A L++ KR+Y +  M  TEAAI      +LY +LGE  ++G+  VR+Y KP++  
Sbjct  553  HGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRW  612

Query  622  IW  623
            IW
Sbjct  613  IW  614

537) cycK in NC_009952


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  341 bits (1281),  Expect = 8e-95, Method: Compositional matrix adjust.
 Identities = 272/586 (47%), Positives = 398/586 (68%), Gaps = 20/586 (3%)

Query  44   LIQCGLLAVAFAALMRSFIVSDFTVVNVVANSHSLKPMIYKVAATWGSHEGSLLLWVLIL  103
            L+ C  +A AF  L+++F+V+DFTV  V +NS++  P+ Y+VAATWG+HEGSLLLWVL++
Sbjct  46   LFIC--VAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLM  103

Query  104  AIFGAGVAVLGKNIPAELRARTLSVQAWISVGFLSFMIFTSNPFDRMFPA-PLNGNDLNP  162
            +    +VAV+++++PA++ AR L+V + +  GFL+F++FTS PF R +PA P++G DLNP
Sbjct  104  SGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNP  163

Query  163  LLQDIGLALHPPLLYLGYVGFSIVFSFAVAALIEGRVDPAWARWVRPWTLAAWVSLTGGI  222
            LLQD GL +HPPLLY+GYVGFS+ F+FA+AAL+ GR+D+A +R  RPWTLAAWV LT GI
Sbjct  164  LLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGI  223

Query  223  ALGSWWAYYELGWGGWWFWDPVENVSFMPWLLGTALLHSAIVTEKRDTFKSWtillailt  282
             LGS WAYYELGWGGWWFWDPVEN SFMPWL GTALLHS  VTE+R  FK+WT+LL+I +
Sbjct  224  VLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICA  283

Query  283  fslsllGTFIVRSGLLTSVHAFAVDPERGVYILGLLFVSIGGSLALYAWRAPQLEGGGLF  342
            FSL LLGTF+VRSG+L SVHAFA DP RG++IL+++ +  GGSL L+A R+ ++ +    
Sbjct  284  FSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNN  343

Query  343  TPISREagllinnlllatataavlfgtlYPLFLEAVTGDKISVGPPFFNASFIPIMLPLV  402
            +  SRE+ LL NN+LL +A   VL+GTL PL    +  + ISVG PFFN+ F  +M+P+ 
Sbjct  344  ALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFA  403

Query  403  FMMGIGPFLSWKRADLPGVMSRLKFaiglgliaalwaw--wMDTDGPVLAIIAMGVAGWL  460
            +++G+GP++ W R D P  + +L  A  +  +         ++     ++ ++M++A W+
Sbjct  404  LLLGVGPLVRWGR-DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI  462

Query  461  LVASAREWLSRIKAGEVPLAESLRRAKNLPRAAHGMTIAHMGVAVLILGMVGSSAWKTEQ  520
             V +  E + R+            R+ + + +  GM  AH+G+AV I G+  S     E+
Sbjct  463  AVLAVAEAVQRVS-----------RGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVER  511

Query  521  ILFASPGTVVEIAGYEVRFDRVERVRGPNYVSDMGTLTAFRDGEQVAVLQPERRWYPVAE  580
             +   +G  V I +Y   F  V  + GPNY ++++ +   R+GE  AVL++E+R Y  + 
Sbjct  512  DVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSR  571

Query  581  MQTTESAIRSTLAGDLYVTIGEPAADRASNEWTLRILFEPFVNFIW  626
            M  TE+AI + L+ DLY ++GE   +  +  W++R+ + PFV  IW
Sbjct  572  MVMTEAAIDGGLTRDLYAALGE---ELDNGAWAVRLYYKPFVRWIW  614

538) Asuc_0708 in NC_009655


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  340 bits (1277),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 256/570 (45%), Positives = 395/570 (70%), Gaps = 20/570 (3%)

Query  49   ILAYSFAVDDFSVEYVAAHSNSQLPTFFKIAATWGGHEGSMLFWLFSLSIWVSLFAFFSR  108
            +L  +F V+DF+V YVA++SN+QLP  +++AATWG+HEGS+L+W++ +S W    A FSR
Sbjct  56   VLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR  115

Query  109  KIDPVIASRTLSvlgllclgfgifivffSNPFIRQFP-LPPEGRDLNPMLQDIGLIFHPP  167
            ++ + I +R L+V+G++C GF  FI+F S PF R +P +P EGRDLNP+LQD GLIFHPP
Sbjct  116  QVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPP  175

Query  168  LLYLGYVGFAVNFALTIAALISGHVDAAVARWMRPWALVSWFFLTVGIVLGAWWAYYELG  227
            LLY+GYVGF+V FA++IAAL+SG++D+A +R  RPW+L +W FLT+GIVLG+ WAYYELG
Sbjct  176  LLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELG  235

Query  228  WGGWWFWDPVENASLMPWllglgllHSLIVTEQRGVFGYWTILYSLLTFAFSLLGTFIVR  287
            WGGWWFWDPVENAS+MPWL G +LLHS+ VTEQR+ F  WT+L S+ +F++ LLGTF+VR
Sbjct  236  WGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVR  295

Query  288  SGVLTSVHAFAVDGERGSVLLILFFLITVSSLTLFAVKTNLRQSAVRFSFVSKETLILLA  347
            SGVL SVHAFA D  RG  +L +  L+T +SL LFAV+ +  +S V  ++ S+E+L+L  
Sbjct  296  SGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGN  355

Query  348  NILFAVAMISVFIGTFYPMLFTAMGWGSISVGAPYFNSIFLPlivilliamvvvlaTKWQ  407
            N+L+  AM+ V++GT+ P++   +G GSISVG P+FN++F  L+V + + + V    +W 
Sbjct  356  NVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWG  415

Query  408  KVDRVFLFKRL--ACLLPSVIVAYALIRHTVLQEPSLKFNPTAFALLSLAVWL--FTATI  463
            + DR   +++L  A ++ +++++  L +  +L++  +   + +   +++A W+  ++ + 
Sbjct  416  R-DRPRNIRKLLWAAVVTTLVLSVLLPW--LLEDKIIAMTAVG---MAMACWIAVLAVAE  469

Query  464  WTDWRAMTMKRA----GMVLAHCGVAVTTIGAVMSGYFGSEFGVRLAPGQSQQLNGYDFR  519
              ++ +   K +    GMV AH G+AVT  G   S  ++ E +VR+ +G+S  +++Y F 
Sbjct  470  AVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  520  YFGFTNEIGPNYTSEKAHFEVVKNGEILTALYPERRYYDVRTMNMSEVGINWGLLGDIYI  579
            +    +  GPNY +  A + V ++GE  + L +E+R Y+   M M+E +I+ GL  D+Y 
Sbjct  530  FREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYA  589

Query  580  VMGDKLTYESGNSGEFTFRLHYKPFVGWLW  609
             +G+ L     ++G  + RL YKPFV W+W
Sbjct  590  ALGEEL-----DNGAWAVRLYYKPFVRWIW  614

539) KKY_784 in NC_016078


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  339 bits (1274),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 248/560 (45%), Positives = 382/560 (69%), Gaps = 15/560 (2%)

Query  66   SVRLVVEHSHSLQPMLYKITSTWGNHEGSMLLFVFTLTLFGAAVAAFGRNLPNELKTLVL  125
            +V  V  +S++  P+ Y++++TWG HEGS+LL V+ ++    AVA F+R++P ++ + VL
Sbjct  67   TVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVL  126

Query  126  SNQGLMVGAFSGFVLFTSNPF-WRLDPAPFNGTELNPVLQDIGLAIHPPLLYLGYVGFSI  184
            +  G++ ++F +F+LFTS PF + L + P +G +LNP+LQD GL +HPPLLY+GYVGFS+
Sbjct  127  AVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSV  186

Query  185  CFSFAVAALVSGRIDAAWARWVRPWTLASWAFLTLGIAMGSYWAYYELGWGGWWFWDPVE  244
             F+FA+AAL+SGR+D+A +R  RPWTLA+W FLTLGI +GS WAYYELGWGGWWFWDPVE
Sbjct  187  AFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVE  246

Query  245  NASFMPWLAGTALLHSAIVMEKRNALKIWTIFLAIITFSLSLLGTFLVRSGILTSVHSFA  304
            NASFMPWLAGTALLHS  V E+R ++K WT++L+I +FSL LLGTFLVRSG+L SVH+FA
Sbjct  247  NASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFA  306

Query  305  SDPTRGIIILAMLAAFIGGAFTLFALRASSLRHGGLFAPISREGALILNNLFLSAATAGV  364
            SDP+RG++ILA +    GG++ LFA+R+  +R     A  SRE+ L+ NN++L AA   V
Sbjct  307  SDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVV  366

Query  365  LIGTLYPLVLEALTGARITVGAPFFDLTFGALMVpllllipfgpflAWKRGDLVAVGQRL  424
            L+GTL PLV   L  + I+VG PFF+  F  LMVP+ LL+  GP++ W R+    + ++L
Sbjct  367  LLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNI-RKL  425

Query  425  FAAivvtviltlivFGFL--GFPISLAPIGLGIGIWVMVGPIAELAERAAIGRAKWAQSW  482
            + A VVT ++  +++  L  +  I+++++G++++ W+ V ++AE  +R + G        
Sbjct  426  LWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT-----  480

Query  483  QRLKGLPKTAWSTAIAHFGVGVSVIGIVCATAFQTENVTSMRAGETVDIAGYSITYQGEE  542
                  + + W+   AH+G++V++ GI  +  +  E    MRAG++V I +Y +T++   
Sbjct  481  ------SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  543  HFEGPNFTADRGTFLIDAPWGRDRQLTSERRVYGVSGTPTTEAGIATYGFSQMYIQFGER  602
            ++ GPN+ ++ + + +      +  L +E+R+Y  S    TEA+I      ++Y  +GE 
Sbjct  535  DITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  603  FGTDGRVVRLWHKPFVLLIW  622
            ++ +++ VRL  KPFV  IW
Sbjct  595  LDNGAWAVRLYYKPFVRWIW  614

540) ASU2_01065 in NC_018690


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  339 bits (1272),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 260/618 (43%), Positives = 408/618 (67%), Gaps = 11/618 (1%)

Query  1    MLPELGYFALILATVVAVFQVGLSLWGEPFKRPQLLSFNPLFSGVQALCCTISFGTLAHA  60
            M+PE G   L LA  VA++    +LWG +   +++++   +F+ +  +C + +F  L HA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FLRDDFSVIYVAQHSNSQLPDFFKFAATWGGHEGSMLFWLTALTLWTGVFCIFSDKSDRL  120
            F+ +DF+V YVA +SN+QLP  ++ AATWG+HEGS+L+W+  ++ WT    +FS +    
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  FNYRTQAMLGLISLGFMLFILLVSNPFERSFPP-PPEGRDLNPMLQDVGLIFHPPLLYLG  179
            +  R  A++G++  GF+ FIL+ S PF R++P+ P EGRDLNP+LQD GLIFHPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFAVSFAMIVASLLSGVLDAATARWIRPWAMISWGFLTAGIILGAWWAYYELGWGGWW  239
            YVGF+V+FA  +A+LLSG LD+A +R  RPW++ +W FLT GI+LG+ WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLLGTALIHSLIVSEQRGIFSYWTillaifafalsllGTFIVRSGVLT  299
            FWDPVENAS+MPWL GTAL+HS+ V+EQR+ F  WT+LL+I AF+L LLGTF+VRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFAVDPDRGMallilffslsfialalfafRVNLWQGEVRFRLFSKETGFLLLNGLLT  359
            SVHAFA DP RGM +L +   ++  +L LFA R +  ++ V   L S+E+ +L  N LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  IATCAVVLGTFYPMIFTAMNWGSISVGAPYFNSIFAPLAVFLMLAMGLAVILRWKQIPLK  419
             A   V+LGT+ P++   +  GSISVG P+FN++F+ L V + L +G++ ++RW +   +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  TILVKLAFLPVALGLALALIQHTIAQTQLYQFELLPLLFVTLAMWI-ILTHIPYLQYMWQ  478
             I  KL   +V   L L+++   + + ++     + +   ++A WI +L+    +Q + +
Sbjct  421  NI-RKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGM---AMACWIAVLAVAEAVQRVSR  476

Query  479  IRPLA-----MRLAHIGFAICVIGAMMNSYYGDEIGVRLKPDQQANLAGFTFRYEGYRDV  533
                +     M  AH+G+A+ + G   +  Y+ E +VR+++++   + ++ F +   RD+
Sbjct  477  GTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDI  536

Query  534  IGANYTAEQAIFSIAKAGEELAVVVPERRYYDVRTMTMAEVGLYHHGLDDVYIVMGDKFG  593
             G+NY +  A++++++ GE  AV+ +E+R Y+   M M+E ++      D+Y  +G+ ++
Sbjct  537  TGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELD  596

Query  594  NLEYAFRLHYKPYVRALW  611
            N   A RL YKP+VR +W
Sbjct  597  NGAWAVRLYYKPFVRWIW  614

541) cycK in NC_015183


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  339 bits (1273),  Expect = 4e-94, Method: Compositional matrix adjust.
 Identities = 267/603 (45%), Positives = 392/603 (66%), Gaps = 19/603 (3%)

Query  27   GARRNDRALMDIASLGSVVMFLLVALSFAALTRAYAVSDFSVRNVWENSHSLMPMLYKLT  86
            G  R D  +M  A++ + ++F+ VA +F  L +A+ V+DF+V  V  NS++ +P+ Y+++
Sbjct  27   GVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVA  86

Query  87   GVWGNHEGSMLLWLLILVFFSALVAVFGRNLPETLKANVLSVQAWISVAFLLFILLTSNP  146
            + WG HEGS+LLW+L++   +  VAVF+R++P  + A VL+V + +  +FL FIL+TS P
Sbjct  87   ATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGP  146

Query  147  FMR-LERVPAEGQDLNPILQDFGLAIHPPLLYLGYVGFSVCFSFAVAALLEGRIDAAWAR  205
            F R L   P EG+DLNP+LQD GL +HPPLLY+GYVGFSV F+FA+AALL GR+D+A +R
Sbjct  147  FARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTR  206

Query  206  WVRPWTLAAWTFLTAGISMGSYWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSALVM  265
              RPWTLAAW FLT GI +GS WAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  V 
Sbjct  207  FARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVT  266

Query  266  EKRETLKIWTVLLAIMTFSLSLLGTFLVRSGVLTSVHAFATDPSRGIFILGILTVFIGGA  325
            E+R  +K WT+LL+I +FSL LLGTFLVRSGVL SVHAFA+DP+RG+FIL+++ +  GG+
Sbjct  267  EQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGS  326

Query  326  FALFAWRAPSLKVGGLFAPISREGALVLNNLILTVSTATVLIGTLYPLILETLTGEKISV  385
            + LFA R+  ++     A  SRE+ L+ NN++L  +   VL+GTL PL+   L    ISV
Sbjct  327  LLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISV  386

Query  386  GAPFFNLTFGLLMIPVLIVTPFGPMLAWKRGDLLGAFQRLYVaaaiaalaGLTL-WYVEN  444
            G PFFN  F  LM+P  ++   GP++ W R+      + L  A   + + ++ L W +E+
Sbjct  387  GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLED  446

Query  445  GGPVLAALGIAAGFWLIFGALADLWYRANFGKLAFGIAFRRLKGLPRSAF---GAALAHM  501
                ++A+G+A + W+              + LA + A +R+    ++++   G   AH+
Sbjct  447  KIIAMTAVGMAMACWI--------------AVLAVAEAVQRVSRGTKTSLSYWGMVAAHL  492

Query  502  glgitvlgivtvttfetetvleMKQGMEAKAGGYSLTFDGIRHAVGPNFTEDRGHFTIRK  561
            GL++T+ GI     +  E  + M+ G      +Y +TF  +R+  GPN+  + + + + +
Sbjct  493  GLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTR  552

Query  562  AGVEVADVWSSKRLYTARRMPTTEAGILTFGLSQLYVSLGDPMADGGMVVRIWWKPFILC  621
             G   A + + KRLY + RM  TEA+I      +LY +LG+ + +G+  VR+  KPF+  
Sbjct  553  HGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRW  612

Query  622  IWG  624
            IW+
Sbjct  613  IWA  615

542) TM1040_1127 in NC_008044


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  338 bits (1267),  Expect = 9e-94, Method: Compositional matrix adjust.
 Identities = 297/644 (47%), Positives = 446/644 (70%), Gaps = 16/644 (2%)

Query  1    MITELGHFALILAFMIAIVQTVVPLIGAHKRWPGWMAVAEPAAQAQFLFTAFSFGALTWA  60
            M+ E GH  L LA+ +A++ +V PL G  +  +  MA A   A   F+  A +F  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FVTSDFSLRLVTLNSHSAKPMIYKISGTWGNHEGSMLLWVLIVTLFGALASVFGGGLPPT  120
            FV +DF++  V+ NS++  P+ Y++++TWG HEGS+LLWVL+++      +VF+  +P+ 
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LKARVLSVQSAIGVAFFAFILFTSNPFLR-LENPPFDGQDLNPLLQDPGLAFHPPFLYLG  179
            + ARVL+V + +  +F+AFILFTS PF R L   P +G+DLNPLLQDPGL FHPP+LY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGLSMAFSFAVAALIEGRVDAAWGRWVRPWTLAAWVFLTIGIALGSWWAYYELGWGGFW  239
            YVG+S+AF+FA+AAL+ GR+D+A  R  RPWTLAAWVFLT+GI LGS WAYYELGWGG W
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASFMPWLLAAALLHSAIVVEKREALKSWTILLAILAFGFSLIGTFIVRSGLLT  299
            FWDPVENASFMPWL ++ALLHS  V E+R ++K+WT+LL+I AF++ L+GTF+VRSG+L 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFANDPERGVVIlgilafftggalllfalRAQAMEAKGVFSMVSRESalvannllla  359
            SVHAFA+DP RG+ IL+++ + TGG+LLLFA+R++ + ++   ++ SRES L++NN+LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  vSCFVVFVGTLWPVVAEMAFDRKLSVGapffdaafppfMVALGLLLPIGSMLPWKRGKG-  418
             + +VV++GTL P+V        +SVG PFF++ F  +MV+++LLL +G+++ W R++  
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  419  --AKTLWTLRYGIVlalalaglawaIQTEKSL-LGPVGVLLGAWVVSGAALDLLQRAGRK  475
               K LW+   ++V +L L+ L   +  +K + + +VG+ ++ W+   A  + +QR +R 
Sbjct  421  NIRKLLWA---AVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG  477

Query  476  DRLSRLMRLPRADWGKAVAHAGLGVTIFAVAGLTAWQKE-DIRVANLNEPFRVGPFELVL  534
             + S       + WG   AH GL+VTI ++A       E D+R+    ++  +  + + +
Sbjct  478  TKTS------LSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRA-GDSVTIHDYRFTF  530

Query  535  SAVEEGRGPNYFTTMGVVDVTRNGKDVATLRPEKRVYPVAQMPTTEAAIDYRFTRDLYVV  594
              V +  GPNY   +++++VTR+G   A L++EKR+Y  ++M  TEAAID  +TRDLY  
Sbjct  531  REVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAA  590

Query  595  LGDAQEGGGFTLRTYIKPFANWIWGGSLLMALGGFLSLSDRRFR  638
            LG+  + G+ ++R Y KPF  WIW+G+LLMALGG+L L+D R+R
Sbjct  591  LGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

543) B932_0385 in NC_019396


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  338 bits (1268),  Expect = 9e-94, Method: Compositional matrix adjust.
 Identities = 278/627 (45%), Positives = 421/627 (68%), Gaps = 21/627 (3%)

Query  4    PEQGHFALALACVLALIQFVVPLWGAHKRNARLVAMAPFLAVSQLLALAISFFSLVMCAV  63
            PE GH  L LA  +AL+  V PLWG  + +AR++A A  +A   ++ +A +FF LV   V
Sbjct  3    PEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFV  62

Query  64   HDDFsvqnvaansaasKPLLYKITGVWGNHEGSVLLWTLILGVCGAAVSAFGRNLPDILR  123
             +DF+V  VA+NS +  P+ Y++++ WG HEGS+LLW L+++    AV+ F+R++P  + 
Sbjct  63   VNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIV  122

Query  124  GRVLAILGGVSAGFQLFCLLTSNPFDRVFPA-PMDGQGMNPLLQDPGLAFHPPILYTGYv  182
            +RVLA++G V AGF  F L+TS PF R +PA P++G+++NPLLQDPGL FHPP+LY GYV
Sbjct  123  ARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYV  182

Query  183  gfavpfafavaaLLEGRVDAAWGRWVRPWAVAAWCFLTCGIALGSWWSYYVLGWGGYWFW  242
            GF+V+FAFA+AALL GR+D+A  R  RPW++AAW FLT GI LGS W+YY LGWGG WFW
Sbjct  183  GFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFW  242

Query  243  DPVENASLIPWLTGTALVHSAIVVEKREGLKIWTVLLAIATFSFSLSGTFLVRSGILNSV  302
            DPVENAS++PWL+GTAL+HS  V E+R G+K WT+LL+I +FS+ L GTFLVRSG+L SV
Sbjct  243  DPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSV  302

Query  303  HAFANDPARGVFILALLALVIGGSLALFAWRAPSLTSGGLFSPVSREGSLVLNNILLCSI  362
            HAFA+DPARG+FILA++ LV GGSL LFA R+  + S    +  SRE+ L+ NN+LL + 
Sbjct  303  HAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAA  362

Query  363  CAVVVTGTMYPPFMQLLAGRTISVGKPFFDAATIPLTIPLLLAMGVGTALPWKRAQLART  422
              VV+ GT+ P   + L+  +ISVG PFF++    L +P+ L +GVG  + W R + +R 
Sbjct  363  MLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR-PRN  421

Query  423  FSHLFVAAIIAAIGL-MLCFWKFSG---ALPIACGALAIWVMAASVTDILRRVGLGHSSM  478
            +  L+ AA+++++ L +L  W + +   A+     A+A W+   +V++ ++RV       
Sbjct  422  IRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV-------  474

Query  479  SDMLARARNLPRSSWGAALAHIGAGITVLGLC-GMSGAQHAIVEIHVGETRSLAGDDWTL  537
                +R+ + + S WG   AH+G ++T+ G+  + + + +  V ++ G++ ++ +   T+
Sbjct  475  ----SRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTF  530

Query  538  LNVHDYAGPNYRAMQADIAIRHNGKLITTLHPEKRDFTTQNQTTTEVAIHTNFITDLYGV  597
             +V+D +GPNYR+  A I++ ++G   + LH+EKR + T     TE AI+  +  DLY+ 
Sbjct  531  REVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAA  590

Query  598  VGDRHGTGADATYVLRLHRNPLAPWMW  624
            +G+  + GA     +RL  +P+  W+W
Sbjct  591  LGEELDNGA---WAVRLYYKPFVRWIW  614

544) nfrE in NC_010278


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  338 bits (1267),  Expect = 9e-94, Method: Compositional matrix adjust.
 Identities = 259/623 (42%), Positives = 401/623 (65%), Gaps = 21/623 (3%)

Query  1    MLPELGYFALIFAAVVAVCQVGLSLWGEITKKTNFLRYNALLSSLQTVGCLSSFGILAYA  60
            M+PE G   L +A  VA+     +LWG     +  +   ++++ L  +   ++F +L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FLSDDFSVIYVAQHSNSQLPDFFKFAATWGGHEGSMLFWLTALTLWTSVFCIFSDKSDRL  120
            F+ +DF+V YVA +SN+QLP  ++ AATWG+HEGS+L+W+  ++ WT    +FS +    
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  FNQRTLAVLGLISLGFMLFILLVSNPFERSFPP-PPEGRDLNPMLQDVGLIFHPPLLYLG  179
            +  R LAV+G++  GF+ FIL+ S PF R++P+ P EGRDLNP+LQD GLIFHPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFAVSFAMVVAALMEGMLDAAVVRWIRPWTMISWGFLTAGIILGAWWAYYELGWGGWW  239
            YVGF+V+FA  +AAL+ G LD+A  R  RPWT+ +W FLT GI+LG+ WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLLGTALVHSLVVSEQRGIFNYWTillaifafalsllGTFIVRSGVLT  299
            FWDPVENAS+MPWL GTAL+HS+ V+EQR+ F+ WT+LL+I AF+L LLGTF+VRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFAVDPDRGMallilffslsfialalfafRVNLWQGEVRFQPLSKETALLLVNGLLS  359
            SVHAFA DP RGM +L +   ++  +L LFA R +  ++ V     S+E+ LL  N LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  VATSVVLLGTFYPMIFTAMNWGSISVGAPYFNNVFAPLALLLMTVMGFAVVLRWKQIPSK  419
             A  VVLLGT+ P++   +  GSISVG P+FN +F+ L + +  ++G + ++RW +  ++
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  QILMKLW-----LLPVAVGLSFLLIQQTISQTKLYQFGVLPTVFVSLAVWIILTHLPYSA  474
            +I   LW      L ++V L+ LL ++ I+         + +V +++A WI +  ++ + 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIA---------MTAVGMAMACWIAVLAVAEAV  471

Query  475  KFLKIRPL------AMRLAHIGFAICVIGAMMNSYYGDEIGVRLKPQQQADLAGFTFKYE  528
            + +           +M  AH+G+A+ + G   +  Y+ E +VR+++ +   + ++ F + 
Sbjct  472  QRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFR  531

Query  529  DYQDGIGANYTSENALFSISKAGKTLATVVAERRYYDIRTMTMSEVGLYHHGLDDIYIVM  588
            + +D  G+NY +  AL+++++ G   A + AE+R Y+   M M+E ++      D+Y  +
Sbjct  532  EVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAAL  591

Query  589  GDKFGNLEYAFRLHYKPYVGALW  611
            G+ ++N   A RL YKP+V  +W
Sbjct  592  GEELDNGAWAVRLYYKPFVRWIW  614

545) APP7_1108 in NC_010939


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  337 bits (1266),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 259/623 (42%), Positives = 400/623 (65%), Gaps = 21/623 (3%)

Query  1    MLPELGYFALIFAAVVAVCQVGLSLWGEITKKTNFLRYNALLNSLQTVGCLSSFGILAYA  60
            M+PE G   L +A  VA+     +LWG     +  +   +++  L  +   ++F +L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FLSDDFSVIYVAQHSNSQLPDFFKFAATWGGHEGSMLFWLTALTLWTSVFCIFSDKSDRL  120
            F+ +DF+V YVA +SN+QLP  ++ AATWG+HEGS+L+W+  ++ WT    +FS +    
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  FNQRTLAVLGLISLGFMLFILLVSNPFERSFPP-PPEGRDLNPMLQDVGLIFHPPLLYLG  179
            +  R LAV+G++  GF+ FIL+ S PF R++P+ P EGRDLNP+LQD GLIFHPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFAVSFAMVVAALMEGMLDAAVVRWIRPWTMISWGFLTAGIILGAWWAYYELGWGGWW  239
            YVGF+V+FA  +AAL+ G LD+A  R  RPWT+ +W FLT GI+LG+ WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLLGTALVHSLVVSEQRGIFNYWTillaifafalsllGTFIVRSGVLT  299
            FWDPVENAS+MPWL GTAL+HS+ V+EQR+ F+ WT+LL+I AF+L LLGTF+VRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFAVDPDRGMallilffslsfialalfafRVNLWQGEVRFQPLSKETALLLVNGLLS  359
            SVHAFA DP RGM +L +   ++  +L LFA R +  ++ V     S+E+ LL  N LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  VATSVVLLGTFYPMIFTAMNWGSISVGAPYFNNVFAPLALLLMTVMGFAVVLRWKQIPSK  419
             A  VVLLGT+ P++   +  GSISVG P+FN +F+ L + +  ++G + ++RW +  ++
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  QILMKLW-----LLPVAVGLSFLLIQQTISQTKLYQFGVLPTVFVSLAVWIILTHLPYSA  474
            +I   LW      L ++V L+ LL ++ I+         + +V +++A WI +  ++ + 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIA---------MTAVGMAMACWIAVLAVAEAV  471

Query  475  KFLKIRPL------AMRLAHIGFAICVIGAMMNSYYGDEIGVRLKPQQQADLAGFTFKYE  528
            + +           +M  AH+G+A+ + G   +  Y+ E +VR+++ +   + ++ F + 
Sbjct  472  QRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFR  531

Query  529  DYQDGIGANYTSENALFSISKAGKTLATVVAERRYYDIRTMTMSEVGLYHHGLDDIYIVM  588
            + +D  G+NY +  AL+++++ G   A + AE+R Y+   M M+E ++      D+Y  +
Sbjct  532  EVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAAL  591

Query  589  GDKFGNLEYAFRLHYKPYVGALW  611
            G+ ++N   A RL YKP+V  +W
Sbjct  592  GEELDNGAWAVRLYYKPFVRWIW  614

546) ccmF in NC_017538


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  336 bits (1261),  Expect = 3e-93, Method: Compositional matrix adjust.
 Identities = 269/606 (45%), Positives = 404/606 (67%), Gaps = 15/606 (2%)

Query  21   SVVPLIGARINDPALMNVSRSTALAQFAFVLISFVALISLHVLSDFSVANVYENSHSLKP  80
            SV PL G    D+ +M  +   A   F  V  +F  L+   V++DF+VA V  NS++  P
Sbjct  21   SVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLP  80

Query  81   LIYKITGVWGNHEGSMLLWVFILALFGAMVALFGVNLPPSLRAHVLAVQGWIATAFYLFI  140
            + Y++++ WG HEGS+LLWV++++     VA+F+ ++P+ + A+VLAV G + ++F  FI
Sbjct  81   VWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFI  140

Query  141  LLTSNPFLRIARP-PIEGRDLNPVLQDPGLALHPPMLYLGYVGFSISFSFAIAALIEGRI  199
            L+TS PF R   + P+EGRDLNP+LQDPGL +HPP+LY+GYVGFS++F+FAIAAL+ GR+
Sbjct  141  LFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRL  200

Query  200  DAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGGWWFWDPVENASLMPWLAGTALL  259
            D+A +R  RPWTL AW+FLTLGI +GS WAYYELGWGGWWFWDPVENAS+MPWLAGTALL
Sbjct  201  DSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALL  260

Query  260  HSAVVMEKREALKIWTVllailtfslsllgtflVRSGVLTSVHAFATDPTRGVFILIILC  319
            HS  V E+R ++K WT+LL+I +FSL LLGTFLVRSGVL SVHAFA+DP+RG+FIL ++ 
Sbjct  261  HSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMV  320

Query  320  VFIGGSLTFYAWRAASLKQGGLFAPISREGalvlnnlllttacatvFVGTLYPLALEVLT  379
            +  GGSL ++A R+  ++     A  SRE+ L+ NN+LL +A   V++GTL PL    L 
Sbjct  321  LVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLG  380

Query  380  GAKISVGAPFFNLTFAPLFVPLLVAVPFGPLLAWKRGDLPGAMQRLMMAGVVSLVTIAIV  439
             + ISVG PFFN  F+ L VP+ + +  GPL+ W R D P  +++L+ A+VV+ + ++++
Sbjct  381  LGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR-DRPRNIRKLLWAAVVTTLVLSVL  439

Query  440  WAW--QSGGAALAPFAIGLAVFVVLGAIVDIAERVKLFQASFNTSWHRAKGLPRSAWGTA  497
             +W  +    A+++ ++++A  + + A+ +  +RV            R+   + S WG  
Sbjct  440  LPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----------RGTKTSLSYWGMV  488

Query  498  FAHAGLGIALIGIVCESTWNIEHIATMRPNDTAQLGAYSVTFNGLRAQQGPNYREDIAAF  557
             AH GL++++ GI      ++E+   MR+ D+  +  Y  TF  +R   GPNYR ++A +
Sbjct  489  AAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALI  548

Query  558  TIRSDDRVVGTMTPSKRNFSTRGMATSEAALLTRGASQLYISLGAAEADGSITARIYYKP  617
             +  ++   + + + KR ++T  M  +EAA+    + +LY +LG    +G+ + R+YYKP
Sbjct  549  GVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKP  608

Query  618  LVLLIW  623
            +V  IW
Sbjct  609  FVRWIW  614

547) ccmF in NC_011386


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  336 bits (1261),  Expect = 3e-93, Method: Compositional matrix adjust.
 Identities = 269/606 (45%), Positives = 404/606 (67%), Gaps = 15/606 (2%)

Query  21   SVVPLIGARINDPALMNVSRSTALAQFAFVLISFVALISLHVLSDFSVANVYENSHSLKP  80
            SV PL G    D+ +M  +   A   F  V  +F  L+   V++DF+VA V  NS++  P
Sbjct  21   SVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLP  80

Query  81   LIYKITGVWGNHEGSMLLWVFILALFGAMVALFGVNLPPSLRAHVLAVQGWIATAFYLFI  140
            + Y++++ WG HEGS+LLWV++++     VA+F+ ++P+ + A+VLAV G + ++F  FI
Sbjct  81   VWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFI  140

Query  141  LLTSNPFLRIARP-PIEGRDLNPVLQDPGLALHPPMLYLGYVGFSISFSFAIAALIEGRI  199
            L+TS PF R   + P+EGRDLNP+LQDPGL +HPP+LY+GYVGFS++F+FAIAAL+ GR+
Sbjct  141  LFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRL  200

Query  200  DAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGGWWFWDPVENASLMPWLAGTALL  259
            D+A +R  RPWTL AW+FLTLGI +GS WAYYELGWGGWWFWDPVENAS+MPWLAGTALL
Sbjct  201  DSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALL  260

Query  260  HSAVVMEKREALKIWTVllailtfslsllgtflVRSGVLTSVHAFATDPTRGVFILIILC  319
            HS  V E+R ++K WT+LL+I +FSL LLGTFLVRSGVL SVHAFA+DP+RG+FIL ++ 
Sbjct  261  HSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMV  320

Query  320  VFIGGSLTFYAWRAASLKQGGLFAPISREGalvlnnlllttacatvFVGTLYPLALEVLT  379
            +  GGSL ++A R+  ++     A  SRE+ L+ NN+LL +A   V++GTL PL    L 
Sbjct  321  LVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLG  380

Query  380  GAKISVGAPFFNLTFAPLFVPLLVAVPFGPLLAWKRGDLPGAMQRLMMAGVVSLVTIAIV  439
             + ISVG PFFN  F+ L VP+ + +  GPL+ W R D P  +++L+ A+VV+ + ++++
Sbjct  381  LGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR-DRPRNIRKLLWAAVVTTLVLSVL  439

Query  440  WAW--QSGGAALAPFAIGLAVFVVLGAIVDIAERVKLFQASFNTSWHRAKGLPRSAWGTA  497
             +W  +    A+++ ++++A  + + A+ +  +RV            R+   + S WG  
Sbjct  440  LPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----------RGTKTSLSYWGMV  488

Query  498  FAHAGLGIALIGIVCESTWNIEHIATMRPNDTAQLGAYSVTFNGLRAQQGPNYREDIAAF  557
             AH GL++++ GI      ++E+   MR+ D+  +  Y  TF  +R   GPNYR ++A +
Sbjct  489  AAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALI  548

Query  558  TIRSDDRVVGTMTPSKRNFSTRGMATSEAALLTRGASQLYISLGAAEADGSITARIYYKP  617
             +  ++   + + + KR ++T  M  +EAA+    + +LY +LG    +G+ + R+YYKP
Sbjct  549  GVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKP  608

Query  618  LVLLIW  623
            +V  IW
Sbjct  609  FVRWIW  614

548) ccmF in NC_015684


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  336 bits (1261),  Expect = 3e-93, Method: Compositional matrix adjust.
 Identities = 269/606 (45%), Positives = 404/606 (67%), Gaps = 15/606 (2%)

Query  21   SVVPLIGARINDPALMNVSRSTALAQFAFVLISFVALISLHVLSDFSVANVYENSHSLKP  80
            SV PL G    D+ +M  +   A   F  V  +F  L+   V++DF+VA V  NS++  P
Sbjct  21   SVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLP  80

Query  81   LIYKITGVWGNHEGSMLLWVFILALFGAMVALFGVNLPPSLRAHVLAVQGWIATAFYLFI  140
            + Y++++ WG HEGS+LLWV++++     VA+F+ ++P+ + A+VLAV G + ++F  FI
Sbjct  81   VWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFI  140

Query  141  LLTSNPFLRIARP-PIEGRDLNPVLQDPGLALHPPMLYLGYVGFSISFSFAIAALIEGRI  199
            L+TS PF R   + P+EGRDLNP+LQDPGL +HPP+LY+GYVGFS++F+FAIAAL+ GR+
Sbjct  141  LFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRL  200

Query  200  DAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGGWWFWDPVENASLMPWLAGTALL  259
            D+A +R  RPWTL AW+FLTLGI +GS WAYYELGWGGWWFWDPVENAS+MPWLAGTALL
Sbjct  201  DSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALL  260

Query  260  HSAVVMEKREALKIWTVllailtfslsllgtflVRSGVLTSVHAFATDPTRGVFILIILC  319
            HS  V E+R ++K WT+LL+I +FSL LLGTFLVRSGVL SVHAFA+DP+RG+FIL ++ 
Sbjct  261  HSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMV  320

Query  320  VFIGGSLTFYAWRAASLKQGGLFAPISREGalvlnnlllttacatvFVGTLYPLALEVLT  379
            +  GGSL ++A R+  ++     A  SRE+ L+ NN+LL +A   V++GTL PL    L 
Sbjct  321  LVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLG  380

Query  380  GAKISVGAPFFNLTFAPLFVPLLVAVPFGPLLAWKRGDLPGAMQRLMMAGVVSLVTIAIV  439
             + ISVG PFFN  F+ L VP+ + +  GPL+ W R D P  +++L+ A+VV+ + ++++
Sbjct  381  LGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR-DRPRNIRKLLWAAVVTTLVLSVL  439

Query  440  WAW--QSGGAALAPFAIGLAVFVVLGAIVDIAERVKLFQASFNTSWHRAKGLPRSAWGTA  497
             +W  +    A+++ ++++A  + + A+ +  +RV            R+   + S WG  
Sbjct  440  LPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----------RGTKTSLSYWGMV  488

Query  498  FAHAGLGIALIGIVCESTWNIEHIATMRPNDTAQLGAYSVTFNGLRAQQGPNYREDIAAF  557
             AH GL++++ GI      ++E+   MR+ D+  +  Y  TF  +R   GPNYR ++A +
Sbjct  489  AAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALI  548

Query  558  TIRSDDRVVGTMTPSKRNFSTRGMATSEAALLTRGASQLYISLGAAEADGSITARIYYKP  617
             +  ++   + + + KR ++T  M  +EAA+    + +LY +LG    +G+ + R+YYKP
Sbjct  549  GVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKP  608

Query  618  LVLLIW  623
            +V  IW
Sbjct  609  FVRWIW  614

549) nrfE in NC_009053


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  336 bits (1260),  Expect = 3e-93, Method: Compositional matrix adjust.
 Identities = 258/623 (42%), Positives = 399/623 (65%), Gaps = 21/623 (3%)

Query  1    MLPELGYFTLIFAAVAAVCQVGLTLWGEITKKTDFLRYNALLSSLQTVGCLSSFGILAYA  60
            M+PE G   L +A   A+      LWG     +  +   ++++ L  +   ++F +L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FLSDDFSVIYVAQHSNSQLPDFFKFAATWGGHEGSMLFWLTALTLWTSVFCIFSDKSDRL  120
            F+ +DF+V YVA +SN+QLP  ++ AATWG+HEGS+L+W+  ++ WT    +FS +    
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  FNQRTLAVLGLISLGFMLFILLVSNPFERSFPP-PPEGRDLNPMLQDVGLIFHPPLLYLG  179
            +  R LAV+G++  GF+ FIL+ S PF R++P+ P EGRDLNP+LQD GLIFHPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFAVSFAMVVAALMEGMLDAAVVRWIRPWTMISWGFLTAGIILGAWWAYYELGWGGWW  239
            YVGF+V+FA  +AAL+ G LD+A  R  RPWT+ +W FLT GI+LG+ WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLLGTALVHSLVVSEQRGIFNYWTillaifafalsllGTFIVRSGVLT  299
            FWDPVENAS+MPWL GTAL+HS+ V+EQR+ F+ WT+LL+I AF+L LLGTF+VRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFAVDPDRGMallilffslsfialalfafRVNLWQGEVRFQPLSKETALLLVNGLLS  359
            SVHAFA DP RGM +L +   ++  +L LFA R +  ++ V     S+E+ LL  N LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  VATSVVLLGTFYPMIFTAMNWGSISVGAPYFNNVFAPLALLLMTVMGFAVVLRWKQIPSK  419
             A  VVLLGT+ P++   +  GSISVG P+FN +F+ L + +  ++G + ++RW +  ++
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  QILMKLW-----LLPVAVGLSFLLIQQTISQTKLYQFGVLPTVFVSLAVWIILTHLPYSA  474
            +I   LW      L ++V L+ LL ++ I+         + +V +++A WI +  ++ + 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIA---------MTAVGMAMACWIAVLAVAEAV  471

Query  475  KFLKIRPL------AMRLAHIGFAICVIGAMMNSYYGDEIGVRLKPQQQADLAGFTFKYE  528
            + +           +M  AH+G+A+ + G   +  Y+ E +VR+++ +   + ++ F + 
Sbjct  472  QRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFR  531

Query  529  DYQDGIGANYTSENALFSISKAGKTLATVVAERRYYDIRTMTMSEVGLYHHGLDDIYIVM  588
            + +D  G+NY +  AL+++++ G   A + AE+R Y+   M M+E ++      D+Y  +
Sbjct  532  EVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAAL  591

Query  589  GDKFGNLEYAFRLHYKPYVGALW  611
            G+ ++N   A RL YKP+V  +W
Sbjct  592  GEELDNGAWAVRLYYKPFVRWIW  614

550) Shal_0550 in NC_010334


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  336 bits (1260),  Expect = 4e-93, Method: Compositional matrix adjust.
 Identities = 260/620 (42%), Positives = 422/620 (69%), Gaps = 12/620 (1%)

Query  1    MIPELGLIFLIISTVTAVLLAFIPLYASYTKNHYLFSYVKTLTALMTVTISASILCLLIS  60
            M+PE G  +L ++   A+LL+  PL +    +  + +    ++ L+ + ++++++ L+ +
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FLLDDFSVAYVANHSNTQLATLYKVAAVWGSHEGSMLFWVVSIAIWG-CLIVFSSRYQDP  119
            F+++DF+VAYVA +SNTQL+  Y+VAA WG+HEGS+L+WV+ ++ W   + VFS +    
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  120  LFIGRMIAILAFVIAGFNLFMLFTSNPFARLLPNFPVEGRDLNPILQDIGLIFHPPMLFL  179
            + ++R++A+++ V AGF  F+LFTS PFAR LP FPVEGRDLNP+LQD GLIFHPP+L++
Sbjct  121  I-VARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYM  179

Query  180  GYVgltitfaaaiaallggKFTQQHAGYLRPWVLMAWVFLTGGNAFGSWWAYNELGWGGW  239
            GYVG++++FA AIAALL+G++    + + RPW L AWVFLT G  +GS WAY ELGWGGW
Sbjct  180  GYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGW  239

Query  240  WFWDPVENASFIPWLVSTALLHSVVLSQQRSsfkittlllcllafslsllgtflVRSGIV  299
            WFWDPVENASF+PWL +TALLHS+ +++QR++FK  TLLL + AFSL LLGTFLVRSG++
Sbjct  240  WFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVL  299

Query  300  QSVHAFASDPTRGMSILFLLGVFVCGALTLFALKAHLIKSKSDFALISRDSVMLLGNIVL  359
             SVHAFASDP+RGM IL ++ +   G+L LFA+++H ++S+ + AL SR+S++L  N++L
Sbjct  300  VSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLL  359

Query  360  IVAAISVLLGTFYPLLFELLNLGTLSVGAPYFNSMFVPLTFVAVLLMGAAPLIKWQQQTL  419
            + A + VLLGT+ PL+   L LG++SVG P+FN+MF  L     LL+G +PL++W ++  
Sbjct  360  MAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRP  419

Query  420  NS----LYPllglfaaaavigvlvaiQTRDGFNPWVWIGATSASWI-LLTLGYLMFNLRQ  474
             +    L + +      +V+   +  +   +  +   +G + A WI +L+++  +  + +
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTA---VGMAMACWIAVLAVAEAVQRVSR  476

Query  475  QGLAVIANKAAMLIAHLGVAVTIIGATAVSNFETQELLRMGPGQGKVVAGYTFVYEDTVD  534
               + ++   +M+ AHLG+AVTI G +   N+  +  +RM +G++  + +Y F + +  D
Sbjct  477  GTKTSLSYW-GMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRD  535

Query  535  VDATSYTAIQANIRVTDSDDNFIGYITPQRQTFKTNAMETTQAGIMRNLARDLYVSSGQQ  594
            + + +Y +  A I VT  ++   + + ++++ ++T+ M  T+A+I   L+RDLY + G++
Sbjct  536  ITGPNYRGGVALIGVTRHGEP-EAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  595  LSETEYLVRISHKPLACWLW  614
            L +    VR+  KP+  W+W
Sbjct  595  LDNGAWAVRLYYKPFVRWIW  614

551) HYPDE_32003 in NC_021172


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  334 bits (1254),  Expect = 1e-92, Method: Compositional matrix adjust.
 Identities = 291/624 (47%), Positives = 427/624 (69%), Gaps = 11/624 (1%)

Query  1    MIVEFGHFalilallvavvqvvlPMAGASLKDERMMRVAEPAAVSQFILLAIAFVALMHA  60
            M+ E+GH  L LAL VA++  V P+ G +  D RMM  A   A   FI +A AF  L+HA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   YVTSDFSVANVAENSHSTKPLIYKMAGVWGNHEGSMLLWVLILALFGAAVAMFGNNLPPT  120
            +V +DF+VA VA NS++  P+ Y++A+ WG HEGS+LLWVL+++    AVA+F+ ++P+ 
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LKARVLSVQASIAVAFLLFTLLTSNPFLR-LDPAPSDGRGLNPILQDPALAFHPPFLYTG  179
            + ARVL+V + +  +FL F L+TS PF R L + P +GR+LNP+LQDP+L FHPP+LY G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGfsiafsfaiaaLIEGRIDAAWARWVRPWTLAAWMFLTIGISMGSWWAYYELGWGGWW  239
            YVGFS+AF+FAIAAL+ GR+D+A +R  RPWTLAAW+FLT+GI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASFMPWLAGTALLHSALVMEKREALKVWTILLAILTFSLSLMGTFIVRSGVLT  299
            FWDPVENASFMPWLAGTALLHS  V E+R ++K WT+LL+I +FSL L+GTF+VRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFAVDPargififaililftggglalfalraSEMQTGGLFQPISREGSLVLNNlllv  359
            SVH+FA DPARG+FI+A+++L TGG+L LFA+R+  +++       SRE+ L+ NN+LL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  tgaatvlvgtlYPMALEGLTGEKISVGPPFFNSTFGPLMVPLLLALPIGPMLAWKRGDLV  419
            ++   VL+GTL P+    L    ISVG PFFN+ F  LMVP+ L L +GP++ W R    
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR----  416

Query  420  GAMQRlafavlaaivaivaffavGHRGPWLAPLGIGVGVYVMMGALSEWANRVKLGQASR  479
               +R          A+V+ + ++   PWL    I +++  +  A++ W   + +++A  
Sbjct  417  ---DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKI-IAMTAVGMAMACWIAVLAVAEA--  470

Query  480  AEIFRRVRNLPRSAYGTLLAHFGIGMLVVGIVATSAYREEHILVMKPGQTLSVAGYDVTF  539
             +   R  + + S  G + AH+G+++ + GI  +  Y  E+ + M++G+++++ +Y  TF
Sbjct  471  VQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTF  530

Query  540  TGVESGRGPNYREDFADFDVKRDGTSVTRLTPSKRLYDAPPQPTTEAGIHAAWRGDLYLV  599
              V    GPNYR + A ++V R+G + + L + KRLY+++    TEA+I+++   DLY  
Sbjct  531  REVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAA  590

Query  600  IGDPQPGGGYAVRAYFNPLVRFIW  623
            +G+    G+ AVR Y++P+VR IW
Sbjct  591  LGEELDNGAWAVRLYYKPFVRWIW  614

552) cycK in NC_003062


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  334 bits (1252),  Expect = 1e-92, Method: Compositional matrix adjust.
 Identities = 269/603 (45%), Positives = 393/603 (66%), Gaps = 19/603 (3%)

Query  27   GARRNDRALMDVASLGSVLMFLLVGFSFAALTHAYAVSDFSVRNVWENSHSLMPMLYKLT  86
            G  R D  +M  A++ + L+F+ V+ +F  L HA+ V+DF+V  V  NS++ +P+ Y+++
Sbjct  27   GVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVA  86

Query  87   GVWGNHEGSMLLWLLILVFFSALVAAFGGNLPETLKANVLAVQAWISVAFLLFILLTSNP  146
            + WG HEGS+LLW+L++   +  VA F+ ++P  + A VLAV + +  +FL FIL+TS P
Sbjct  87   ATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGP  146

Query  147  FLR-LERVPAEGQDLNPILQDFGLAIHPPLLYLGYVGFSVCFSFAVAALLEGRIDAAWAR  205
            F R L   P EG+DLNP+LQD GL +HPPLLY+GYVGFSV F+FA+AALL GR+D+A +R
Sbjct  147  FARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTR  206

Query  206  WVRPWTLAAWTFLTAGISMGSYWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSALVM  265
              RPWTLAAW FLT GI +GS WAYYELGWGGWWFWDPVENASFMPWLAGTALLHS  V 
Sbjct  207  FARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVT  266

Query  266  EKREALKIWTVLLAIMTFSLSLLGTFLVRSGVLTSVHAFATDPSRgifilgiltifiggA  325
            E+R ++K WT+LL+I +FSL LLGTFLVRSGVL SVHAFA+DP+RG+FIL+++ +  GG+
Sbjct  267  EQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGS  326

Query  326  FALFAWRAPSLKAGGLFAPISREGALVLNNLILTVSTATVLIGTLYPLILETLTGEKISV  385
            + LFA R+  +++    A  SRE+ L+ NN++L  +   VL+GTL PL+   L    ISV
Sbjct  327  LLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISV  386

Query  386  GAPFFNLTFGLLMIPVLIVTPFGPMLAWKRGDLLGAFQRLYVaaaiaalaGLTL-WYIEN  444
            G PFFN  F  LM+P  ++   GP++ W R+      + L  A   + + ++ L W +E+
Sbjct  387  GEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLED  446

Query  445  GGPVLAALGIAAGFWLIFGALTDLWYRANFGKLAFGIAFRRLKGLPRSAF---GTALAHM  501
                ++A+G+A + W+              + LA + A +R+    ++++   G   AH+
Sbjct  447  KIIAMTAVGMAMACWI--------------AVLAVAEAVQRVSRGTKTSLSYWGMVAAHL  492

Query  502  GLGITVLGivivttyetetvLEMKQGTVAEAGGYSLTFDGIRHAVGPNFTEDRGHFTVRK  561
            GL++T+ GI +   Y  E  + M+ G      +Y +TF  +R+  GPN+  + + + V +
Sbjct  493  GLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTR  552

Query  562  AGVEVADVWSSKRLYTARRMPTTEAGILTFGLSQLYVSLGDPMADGGMVVRIWWKPFILC  621
             G   A + + KRLY + RM  TEA+I      +LY +LG+ + +G+  VR+  KPF+  
Sbjct  553  HGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRW  612

Query  622  IWG  624
            IW+
Sbjct  613  IWA  615

553) UMN179_01704 in NC_015460


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  332 bits (1245),  Expect = 5e-92, Method: Compositional matrix adjust.
 Identities = 262/624 (42%), Positives = 410/624 (66%), Gaps = 25/624 (4%)

Query  1    MLPELG--FLSLLIVVALTFCLAFLPAYGLWRNKHAFAQLAYPLS----MLYALFCTI-T  53
            M+PE G  +L L + VAL     +L+ Y LW   ++ A++  + +    +L+  +C   +
Sbjct  1    MMPEYGHALLCLALGVAL-----LLSVYPLWGVARGDARMMASAGVFAWLLF--ICVAGA  53

Query  54   LIALAYAFATNDFSLEYVAQHSNSNLPLFYKLAATWGGHEGSMLFWLFSLALWTALFACY  113
            ++ L  AF  NDF++ YVA +SN++LP+ Y++AATWG+HEGS+L+W++ ++ WT   A +
Sbjct  54   FFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVF  113

Query  114  NRHNDQRLVISTLVLMGMISFCFAVFILFLSNPFNRLYPI-PLEGRDLNPMLQDIGLIVH  172
            +R+    +V   L +MGM+   F  FILF S PF R  P  P+EGRDLNP+LQD GLI H
Sbjct  114  SRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFH  173

Query  173  PPLLYLGYVGLAVNFALVIAALIYQQFNAAFARLCRPWVLASWAFLTIGIVLGSWWAYYE  232
            PPLLY+GYVG++V FA+ IAAL+  ++++AF+R+ RPW LA+W FLT+GIVLGS WAYYE
Sbjct  174  PPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYE  233

Query  233  LGWGGWWFWDPVENASLMPWLVATALLHTLIVYEKRGILLYWVVllsifafslsllGTFI  292
            LGWGGWWFWDPVENAS+MPWL +TALLH++ V E+R+ +  W +LLSI AFSL LLGTF+
Sbjct  234  LGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFL  293

Query  293  VRSGVLASVHAFSIDPQRGHallaifllftlcglllfalRIKELHSIVRFQLFSKEAAFL  352
            VRSGVL SVHAF+ DP RG  +LA+ +L T  +LLLFA+R   ++S V   L S+E+ +L
Sbjct  294  VRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLL  353

Query  353  FANILFSLATFIVFTGTFYPMIYNMLGWGTISVGTPYFNRlivplifillilmlFSPYLH  412
              N+L+  A ++V+ GT+ P++ + LG G+ISVG P+FN ++  L+  + +L+  +P ++
Sbjct  354  GNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVR  413

Query  413  WQKLPFSSMKKV--ALYLLPAVIITLLQ-ILMEQNFNFSPPPL----WAFIclslawwll  465
            W +    +++K+  A  +   V+  LL  +L ++ +  ++  +    W  +         
Sbjct  414  WGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQR  473

Query  466  lntlccSQWKNKKQWPMRLAHIGVAISIIGGTMSNYYAKEISVKMSPGDTQTLHNYQFTY  525
            ++    +   +   W M  AH+G+A++I G + S+ Y+ E  V+M +GD+ T+H+Y+FT+
Sbjct  474  VSRGTKT---SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTF  530

Query  526  LGFRNEIGPNYTAERTFFVISQQDKLIAEVSAERRYYDVRTMNMSEVGIKWSWLSDLYIV  585
               R+  GPNY +  +++ +++++   A + AE+R Y+   M M+E +I  +   DLY  
Sbjct  531  REVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAA  590

Query  586  MGNKISANEFAFRLHYKPYIRWLW  609
            +G+ +     A RL YKP++RW+W
Sbjct  591  LGEELDNGAWAVRLYYKPFVRWIW  614

554) ccmF in NC_003911


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  332 bits (1244),  Expect = 6e-92, Method: Compositional matrix adjust.
 Identities = 273/580 (48%), Positives = 413/580 (72%), Gaps = 10/580 (1%)

Query  62   VTSDFSLRLVVLNSHSAKPMLYKISGTWGNHEGSMLLWVLIVTLFGAMAAWFGGGLPPTL  121
            V +DF++  V  NS++  P+ Y++++TWG HEGS+LLWVL+++      A F+  +P+ +
Sbjct  62   VVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADI  121

Query  122  KARVLAVQSaiavaffafilfTSNPFLR-LAVPPFDGQDLNPLLQDPGLAFHPPFLYLGY  180
             ARVLAV + +  +F+AFILFTS PF R L+  P +G+DLNPLLQDPGL FHPP+LY+GY
Sbjct  122  VARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGY  181

Query  181  VGLSMAFSFAVAALIEGRVDAAWGRWVRPWTLAAWIFLTIGIALGSWWAYYELGWGGFWF  240
            VG+S+AF+FA+AAL+ GR+D+A  R  RPWTLAAW+FLT+GI LGS WAYYELGWGG WF
Sbjct  182  VGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWF  241

Query  241  WDPVENASFMPWLLAAALLHSAIVVEKREALKSWTILLAILAFGFSLIGTFIVRSGLLTS  300
            WDPVENASFMPWL ++ALLHS  V E+R ++K+WT+LL+I AF++ L+GTF+VRSG+L S
Sbjct  242  WDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVS  301

Query  301  VHAFANDPERGVfiliilglftggaltlfaaRAQAMEAKGVFSMVSRESALVLNNILLAV  360
            VHAFA+DP RG+FIL ++ L TGG+L LFA R++ + ++   ++ SRES L+ NN+LL  
Sbjct  302  VHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMA  361

Query  361  SAFVVFFGTLWPILAEMFFDRKLSVGAPFFNAAFTPFMVALGVVLPLGAMLPWKRGKLGR  420
            + +VV++GTL P++   +    +SVG PFFN+ FT +MV+++++L +G+++ W R++   
Sbjct  362  AMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRN  421

Query  421  VAHSLRYafvlalalailvw-vMQTGRSALGPVGLFLGAWITFGAIVDLWSRTGRSGSVA  479
            +   L+ A V +L L++L+  +++    A+ +VG+ ++ WI+  A+ +   R +R+   +
Sbjct  422  IRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTS  481

Query  480  RLFRLPRADWGKAVAHSGLGVTMFAIAGLMAWEVE-DIRVARLGEPFEVGGFTLTLDGVE  538
              +      WG   AH GL+VT+ +IA      VE D+R+ R G++  + ++ +T+  V 
Sbjct  482  LSY------WGMVAAHLGLAVTITGIAFSQNYSVERDVRM-RAGDSVTIHDYRFTFREVR  534

Query  539  RVQGPNYISTMGSVRLEQAGRAIDTLHPEKRDYPVARMPTTEAAIDYRILRDVYVVIGDQ  598
             + GPNY + ++ + + + G +   LH+EKR Y  +RM  TEAAID  + RD+Y  +G++
Sbjct  535  DITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  599  QDDGGWTIRTYIKPFANWIWGGCILMALGGALSLSDRRFR  638
             D+G+W++R Y KPF  WIW+G +LMALGG L L+D R+R
Sbjct  595  LDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

555) Nham_1439 in NC_007964


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  331 bits (1242),  Expect = 1e-91, Method: Compositional matrix adjust.
 Identities = 280/628 (45%), Positives = 413/628 (66%), Gaps = 19/628 (3%)

Query  1    MIAEVGHYALVLALGLALIQSTVPIIGARLHDGALMNVARSTALAQLLFVGVS--FLALV  58
            M++E GH  L LALG+AL+ S  P+ G    D+ +M  A +  +A LLF+ V+  F+ LV
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMM--ASAGVFAWLLFICVAGAFFVLV  58

Query  59   TLHVISDFSVVNVFENSHSLKPMLYKITGVWGNHEGSMLLWVTILALFGGLVAAFGSNLP  118
               V++DF+V  V  NS++  P+ Y++++ WG HEGS+LLWV +++     VA F+ ++P
Sbjct  59   HAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVP  118

Query  119  LSLRAHVLAVQGWIATAFYLFILLTSNPFMRLVSP-PLEGRDLNPVLQDIGLAVHPPMLY  177
              + A+VLAV G + ++F  FIL+TS PF R +++ P+EGRDLNP+LQD GL  HPP+LY
Sbjct  119  ADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLY  178

Query  178  LGYVGFSISFSFAVAALIEGRIDAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGG  237
            +GYVGFS++F+FA+AAL+ GR+D+A +R  RPWTL AW+FLTLGI +GS WAYYELGWGG
Sbjct  179  MGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGG  238

Query  238  WWFWDPVENASLMPWLAGTALLHSSVVMEKRNALRVWtillailtfslsllgtflVRSGV  297
            WWFWDPVENAS+MPWLAGTALLHS  V E+R +++ WT+LL+I +FSL LLGTFLVRSGV
Sbjct  239  WWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGV  298

Query  298  LTSVHAFATDPTRGVFILLILCTFIGGSLSLYIWRASALKQGGLFAPISREGALVLNNLF  357
            L SVHAFA+DP+RG+FIL ++    GGSL L+  R+  ++     A  SRE+ L+ NN++
Sbjct  299  LVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVL  358

Query  358  LTTACATVFIGTLYPLALEVITGTRISVGAPFFNLTFAPLFVPLLIAVPFGPLLAWKRGD  417
            L +A   V++GTL PL    +    ISVG PFFN  F+ L VP+ + +  GPL+ W R D
Sbjct  359  LMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR-D  417

Query  418  LAGASQRLMaagiggiiaVAVLWAWTRGGSTFAPLAIGLAV--FVILGALSDLAGRINLF  475
             +   ++L+ A++   + ++VL +W   +  +A  A+G+A+   + + A+++   R++  
Sbjct  418  RPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS--  475

Query  476  HASLPVSFRRAKGLPRSAWGTVFAHAGLGVALIGIVCETTWNTEYIASMKQNDVAQVGGY  535
                     R+   + S WG V AH GL+V++ GI      + E    M+  D   + +Y
Sbjct  476  ---------RGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  536  SLTFDGTTQRERSNFREQIARFTVSKDGQPIAVMTPSKRNFTTRAASTTEAALLTRGASQ  595
             +TF    +   +N+R  +A + V+++G+P AV+ + KR + T     TEAA+    + +
Sbjct  527  RFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  596  LYISLGDTAADGAVAVRIYHKPMVLLIW  623
            LY +LG+   +GA AVR+Y KP V  IW
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIW  614

556) cycK in NC_016622


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  330 bits (1237),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 288/601 (48%), Positives = 413/601 (69%), Gaps = 18/601 (2%)

Query  60   AHVVSDFSVLNVVQNSHSAKPMLYKVSGVWGNHEGSMMLWIVMLTVFGAAVAMFGRNLPP  119
            A VV+DF+V  V  NS++  P+ Y+V++ WG HEGS++LW+++++    AVA+F+R++P+
Sbjct  60   AFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPA  119

Query  120  TLKARVLAVQgligvgfllfilATSNPFIRVVPA-PIDGNDLNPLLQDPGLAFHPPFLYA  178
             + ARVLAV G++  GFL FIL TS PF R +PA P++G DLNPLLQDPGL FHPP+LY 
Sbjct  120  DIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYM  179

Query  179  GYVGFSMAFSFAVAALIEGRVDPAWARWVRPWTLAAWSTLTMGIAMGSwwayyelgwggw  238
            GYVGFS+AF+FA+AAL+ GR+D+A +R  RPWTLAAW  LT+GI +GS WAYYELGWGGW
Sbjct  180  GYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGW  239

Query  239  wywDPVENASFMPWLAGTALLHSAIVVEKRDALKSWTILLSIVTFSLSLMGTFLVRSGIL  298
            W+WDPVENASFMPWLAGTALLHS  V E+R ++K+WT+LLSI +FSL L+GTFLVRSG+L
Sbjct  240  WFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVL  299

Query  299  TSVHAFAVDPKRGVFILVLLAIATGGSLLLYSLRAPSLKAGGLFAPISREGALVMNNLLL  358
             SVHAFA DP RG+FIL ++ + TGGSLLL+++R+  +++    A  SRE+ L+ NN+LL
Sbjct  300  VSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLL  359

Query  359  STATATVFIGTLYPLFLDILNLGKVSVGAPFFNATFIPVAIPMIVAMVVGPFLSWKRADL  418
             +A   V++GTL PL    L LG +SVG PFFN+ F  + +P  + + VGP++ W R   
Sbjct  360  MAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRP  419

Query  419  GAALSRLWiagvavviavaitayvkaGGGPLLALVGIALAAWAFVGSLVEFADRIALFRT  478
                  LW A V+ ++   + + +  +    ++ VG+A+A W  V ++ E  +R++    
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS----  475

Query  479  SFRNSWHRAVHLPRSAWGMTIAHACVGLSILGMTGTSAWQTESITAMKPGDQATVAGYEF  538
                   R+   + S WGM  AH  ++++I G++ +     E    M++GD  T+ +Y F
Sbjct  476  -------RGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRF  528

Query  539  RFDSIGLVDGPNFKAERGVFTVTQDGRPIATLTPErrsysttrmtttesAIHTTVFSDLY  598
             F  +  + GPN+++  +++ VT++G P A L +E+R Y+T+RM  TE+AI+  +  DLY
Sbjct  529  TFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLY  588

Query  599  VALGDPTQNGTAWIVRIYHHPLVPWIWIGGAGMMLGGLVSLTDRRFRIGAPERRRGVGKA  658
             ALG+  +NG AW VR+Y  P+V WIW GG  M LGGL+ L+D R+R     RR+ +  A
Sbjct  589  AALGEELDNG-AWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR-----RRKPLPEA  642

Query  659  G  659
            G
Sbjct  643  G  643

557) GOX1650 in NC_006677


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  329 bits (1233),  Expect = 5e-91, Method: Compositional matrix adjust.
 Identities = 262/606 (44%), Positives = 410/606 (68%), Gaps = 21/606 (3%)

Query  25   PLWGANRRDARLVGLAPYLAVSQLIALGYSFLCLVMCAVSDDFSVQNVAANSAVSKPLLY  84
            PLWG  R DAR+++ A  +A   +I ++ +F+ LV   V +DF+V  VA+NS    P+ Y
Sbjct  24   PLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWY  83

Query  85   KITGVWGNHEGSVLLWTLILAVCGGAVSLFGRNLPDILRGRVLAILGGVSAGFQMFCLLT  144
            ++++ WG HEGS+LLW L+++    AV++F+R++P  + +RVLA++G V AGF  F L+T
Sbjct  84   RVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFT  143

Query  145  SDPFDRVFPA-PMDGQGMNPLLQDPGLAFHPPILYTGYvgfavpfafavaaLIEGRVDAA  203
            S+PF R +PA P++G+++NPLLQDPGL FHPP+LY GYVGF+V+FAFA+AAL+ GR+D+A
Sbjct  144  SGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSA  203

Query  204  WGRWVRPWAVAAWCFLTCGIALGSWWSYYVLGWGGYWFWDPVENASLIPWLTGTALVHSA  263
              R  RPW++AAW FLT GI LGS W+YY LGWGG WFWDPVENAS++PWL+GTAL+HS 
Sbjct  204  FTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSM  263

Query  264  IVVEKREGLKIWTVLLAIATFSFSLSGTFLVRSGILNSVHAFANDPARGVFILALLAIVI  323
             V E+R G+K WT+LL+I +FS+ L GTFLVRSG+L SVHAFA+DPARG+FILA++ +V 
Sbjct  264  AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVT  323

Query  324  GGSLALFAWRAPSLTSTGLFSPISREGSLVLNNILLCSICAVVVTGTMYPPFMQLLAGRT  383
            GGSL LFA R+  + S    +  SRE+ L+ NN+LL +   VV+ GT+ P   + L+  +
Sbjct  324  GGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGS  383

Query  384  ISVGKPFFDaatipltlplllaMGVGTALPWKRAQLARTFSHLYaaagiaaigL-VLCFW  442
            ISVG PFF++    L +P+ L +GVG  + W R + +R +  L  AA ++++ L VL  W
Sbjct  384  ISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR-PRNIRKLLWAAVVTTLVLSVLLPW  442

Query  443  KLSG-VLPIACGALAI--WVIAASASDVLRRIGIGHTSAQGVWERMKHLPRSSWGAALAH  499
             L + +++++  ++A+  W+   + ++ ++R++ G  ++            S WG   AH
Sbjct  443  LLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTSL-----------SYWGMVAAH  491

Query  500  IGAGITVLGLC-GMSQAQHAIVEVHIGETRSLAGDDWTLLDVHDYIGPNYKAMQADIAIR  558
            +G ++T+ G+  + + + +  V ++ G++ ++ +   T+ +V+D  GPNY++  A I++ 
Sbjct  492  LGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVT  551

Query  559  HNGKLVTILHPEKRDFTTQSQTTTEVAIHTNFITDLYGVVGDRHGTGKDTTYVLRLHRNP  618
            ++G   ++LH+EKR + T     TE AI+  +  DLY+ +G+  + G   +  +RL  +P
Sbjct  552  RHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG---AWAVRLYYKP  608

Query  619  LAPWMW  624
            +  W+W
Sbjct  609  FVRWIW  614

558) ccmF in NC_020908


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  328 bits (1232),  Expect = 6e-91, Method: Compositional matrix adjust.
 Identities = 273/598 (46%), Positives = 402/598 (68%), Gaps = 42/598 (7%)

Query  70   SFSALMYAFVVSDFSVKLVVANSHSAKPLLYKISGVWGNHEGSMLLWLLILVLFGACASW  129
            +F  L+ AFVV+DF+V  V +NS++  P+ Y++++ WG HEGS+LLW+L++       + 
Sbjct  53   AFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAV  112

Query  130  FGGNLPASLRARVLAVQAAISVAFYAFVLFTSNPFERLAFPPF--DGRDLNPLLQDPGLA  187
            F+ ++PA + ARVLAV + +  +F AF+LFTS PF R ++P+F  +GRDLNPLLQDPGL 
Sbjct  113  FSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFAR-TLPAFPVEGRDLNPLLQDPGLI  171

Query  188  FHPPFLYLGYVGLSMSFSFAIAALLEGRVDAAWGRWVRPWTLAAWIFLTIGIALGSWWAY  247
            FHPP+LY+GYVG+S++F+FAIAALL GR+D+A  R  RPWTLAAW+FLT+GI LGS WAY
Sbjct  172  FHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAY  231

Query  248  YELGWGGFWFWDPVENASFMPWLLAAALLHSAIVVEKRESLKAWTILLAILAFGFSLLGT  307
            YELGWGG WFWDPVENASFMPWL ++ALLHS  V E+R ++KAWT+LL+I AF++ LLGT
Sbjct  232  YELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGT  291

Query  308  FIVRSGVLTSVHAFANDPERgvfillilaffvggglllfalRASAMESKGVFGMVSRETA  367
            F+VRSGVL SVHAFA+DP RG+FIL ++ +  GG+LLLFA+R+  + S+   ++ SRE+ 
Sbjct  292  FLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESL  351

Query  368  VVSNNVLLAVSCFVVFWGTIWPLVVELASANPVWGAGMTNPFYAMGLFDRPEQVSVGSPF  427
            +++NNVLL  + +VV+ GT+ PLV                    +GL      +SVG PF
Sbjct  352  LLGNNVLLMAAMLVVLLGTLLPLVHK-----------------QLGL----GSISVGEPF  390

Query  428  FNFAFTLIFVPLTLILPIGSVLAWKRGSlaraakamaplavlaiaFG-LLAYAVQTGRSA  486
            FN  FT + VP++L+L +G+++ W R+      K + +  V ++ ++ LL+  ++    A
Sbjct  391  FNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIA  450

Query  487  MgpigvvlgiwvvggAAMDLWLRT-GRAGLADRAGRLTRLPRADWGKFTAHAGMGITVFA  545
            M ++G+          AM  W+   + A   +R +R T+ + + WG  +AH G+++T+ +
Sbjct  451  MTAVGM----------AMACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITG  500

Query  546  VASLLAWE-DEDIRIAQIGDRWQVGIHEIELT--DVIGIEGPNYFGEGGIITVFRNGRDV  602
            +A       + D+R+ + GD   V IH+  +T  +V +I GPNY G  ++I V R+G   
Sbjct  501  IAFSQNYSVERDVRM-RAGD--SVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPE  557

Query  603  GQVFAEKRIYPVAQMPTTEAGIRNGILRDVYVVLGDPQTGGGWAVRTYIKPFASWVWG  660
            + + AEKR+Y  ++M  TEA+I  G+ RD+Y  LG+    G+WAVR Y KPF  W+W+
Sbjct  558  AVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

559) Caul_3891 in NC_010338


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  328 bits (1230),  Expect = 9e-91, Method: Compositional matrix adjust.
 Identities = 256/577 (45%), Positives = 379/577 (66%), Gaps = 33/577 (5%)

Query  58   IHAFVVSDFSVANVAANSHTAKPMLYKVAGAWGSHEGSMLLWCLVLTGYGAAIATFGEAL  117
            +HAFVV+DF+VA VA+NS+T  P+ Y+VA++WG+HEGS+LLW L+++G   A+A F+  +
Sbjct  58   VHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQV  117

Query  118  PPRLRAFAVAVQGALGVLFLAYTVFASNPMAR-LVDVPVEGASLNPLLQDPALAFHPPFL  176
            P+ + A  +AV G +   FLA+ +F+S P AR L   PVEG  LNPLLQDP+L FHPP+L
Sbjct  118  PADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLL  177

Query  177  YCGYVGFSVVFSFAMAALIEGRVDAAWARWVRPWTLAAWSFLTVGITLGAFWAYYELGWG  236
            Y GYVGFSV F+FA+AAL+ GR+D+A +R  RPWTLAAW FLT+GI LG+ WAYYELGWG
Sbjct  178  YMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWG  237

Query  237  GWWFWDPVENASFMPWLIGTALLHSAIVLEKRGALPGWTVFLGLAAFTFSMLGAFLVRSG  296
            GWWFWDPVENASFMPWL GTALLHS  V E+R+++ +WT++L++ AF++ +LG+FLVRSG
Sbjct  238  GWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSG  297

Query  297  VLTSVHAFAVDPTRGVLLLSIMglaagagfvlfalraPSLNAGGLFAPVSRESAIVLNNI  356
            VL SVHAFA DP+RG+++L++M L +G++++LFA+R+  + +    A  SRES ++ NN+
Sbjct  298  VLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNV  357

Query  357  ILSTATAVVLVGTLFPLIREAVDGEAVSVGPPFFNMTFVPLMVLAMAVLPAGPLLAWKRG  416
            +L +A  VVL+GTL+PL++  ++  ++SVG PFFN  F  LMV    +L  GPL+ W R+
Sbjct  358  LLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRD  417

Query  417  DarlvvrrlwlalacaailglvaFAVVAPRsalasaglalgFWLIGGALLELAERVKAFR  476
                   R    L  AA++  + ++V+ P             WL+ + ++ ++    A  
Sbjct  418  R-----PRNIRKLLWAAVVTTLVLSVLLP-------------WLLEDKIIAMTAVGMA-M  458

Query  477  APWAEVRRRTTGLPRGA---------WGTTLAHAGLGLFVLGASFETTWRVEAAQALGVG  527
            A W  V   + ++ R +         WG   AH GL++ + G +F     VE    +  G
Sbjct  459  ACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAG  518

Query  528  GQLKLGAYELTLTDVGTVEGSNYIAERGIVKITKAGAPVCEAKPERRFYPTGRQTTSEVA  587
            + + +  Y +T+ +V  + G+NY +  +++ +T+ G P     +E+R+Y T+R   +E A
Sbjct  519  DSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAA  578

Query  588  ICPKILDDLYIVLGERRAGEGGQPAWLVRAFVNPWVR  624
            I   +  DLY  LGE    E ++ AW VR + +P VR
Sbjct  579  IDGGLTRDLYAALGE----ELDNGAWAVRLYYKPFVR  611

560) cycK in NC_020453


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  326 bits (1224),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 287/627 (46%), Positives = 418/627 (67%), Gaps = 18/627 (2%)

Query  1    MIAESGHYalvlalalalIQSTVPMLGAAQRDVALMNVGRSAALAQLLFAGLS--FIALI  58
            M++E GH  L LAL++AL+ S  P+ G A+ D  +M  + ++ +A LLF  ++  F+ L+
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMM--ASAGVFAWLLFICVAGAFFVLV  58

Query  59   TLHVTSDFSVANVFENSHSMKPLLYKITGVWGNHEGSMLLWVSILALFGAMVAAFGNNLP  118
               V +DF+VA V  NS++  P+ Y++++ WG HEGS+LLWV +++     VA F+ ++P
Sbjct  59   HAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVP  118

Query  119  PSLRARVLSVQAWVASAFYLFILTTSNPFAR-LATPPIEGRDLNPVLQDIGLAVHPPMLY  177
            + + ARVL+V + V ++F  FIL TS PFAR L++ P+EGRDLNP+LQD GL  HPP+LY
Sbjct  119  ADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLY  178

Query  178  LGYVGFSISFSFAIAALLEGRIDAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGG  237
            +GYVGFS++F+FAIAALL GR+D+A +R  RPWTL AW+FLTLGI +GS WAYYELGWGG
Sbjct  179  MGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGG  238

Query  238  WWFWDPVENASLMPWLAGTALLHSAVVMEKRNALKVWtillsiltfslsllgtflVRSGV  297
            WWFWDPVENAS+MPWLAGTALLHS  V E+R ++K WT+LLSI +FSL LLGTFLVRSGV
Sbjct  239  WWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGV  298

Query  298  ITSVHAFASDPTRGVFILGILVLFIGGSLTLFAGRATALKQGGLFAPISREGALVLNNLL  357
            + SVHAFASDP+RG+FIL+++VL  GGSL LFA R+  ++     A  SRE+ L+ NN+L
Sbjct  299  LVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVL  358

Query  358  LTVSCATVLFGTLYPVIMEALDF-KLSVGAPFYNltfgplfallllMVPFGPMLAWKRGD  416
            L  +   VL+GTL P++   L++  +SVG PF+N  F  L   + L++  GP++ W R+ 
Sbjct  359  LMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR  418

Query  417  LVAAMQRLLAAGVTALVaiaiawawaRGG-SALAPLGIGLGVFVISGAVVDLVERSGIAR  475
                 + L AA VT+LV   +      +   A++++G++++  +   AV + V+R  ++R
Sbjct  419  PRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQR--VSR  476

Query  476  VPFKTALHRTRGLPRSVWGTAFAHAGLGVALLGIVCETTWNSELISTLRPGDIRNLAGYQ  535
               KT+L        S WG   AH GL+V++ GI      + E    +R+GD   + +Y+
Sbjct  477  GT-KTSL--------SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  536  IKFDGMTQRQGPNFAEVVSTFVISENGRQLAVMTPSKRSFATRGMSTTEAALMTRGVSQL  595
            + F  + +  GPN+   V+ + ++ +G   AV+ + KR + T  M  TEAA+      +L
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  596  YVSLGDTTADGGLAVRIYHKPLVLLIW  622
            Y +LG+   +G+ AVR+Y KP+V  IW
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIW  614

561) WQG_17610 in NC_020515


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  326 bits (1224),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 245/569 (44%), Positives = 380/569 (67%), Gaps = 16/569 (2%)

Query  53   SFIALAYGFLQDDFSLSYVAAHSNSQLPTFFKFAATWGGHEGSMLFWLTALCLWTGIFCI  112
            +F+ L  +F+ +DF+++YVA++SN+QLP  ++ AATWG+HEGS+L+W+  +  WT    +
Sbjct  53   AFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAV  112

Query  113  FSRQIDRLFAHRTLAVLALIIFGFALFIAWVSSPFERLYPQ-PPEGRDLNPMLQDIGLIF  171
            FSRQ+   +  R LAV++++  GF  FI   S+PF R  P  P EGRDLNP+LQD GLIF
Sbjct  113  FSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIF  172

Query  172  HPPLLYLGYVGFAVSFAMSVATLLGGVFDYAIARWIRPWTMIAWGFLTAGIMLGAWWAYY  231
            HPPLLY+GYVGF+V+FA ++A+LL+G +D A++R  RPWT+ AW FLT GI+LG+ WAYY
Sbjct  173  HPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYY  232

Query  232  ELGWGGWWFWDPVENASLMPWLLGTALIHSLIVSEQRGIFSYWTillaifafalsllGTF  291
            ELGWGGWWFWDPVENAS+MPWL GTAL+HS+ V+EQR+ F  WT+LL+I AF+L LLGTF
Sbjct  233  ELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTF  292

Query  292  IVRSGVLTSVHAFAVDADRGIALLALFFTLSFIALSLFAFRANFWQGDVRFRLLSKETAF  351
            +VRSGVL SVHAFA D+ RG+ +LA+   ++  +L LFA R++  ++ V   L S+E+ +
Sbjct  293  LVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLL  352

Query  352  LLINGLFVLATVVVVLGTFYPMIFTAMGWGAISVGAPYFNTVFTPLVLLLMLIMVFAVLL  411
            L  N L++ A +VV+LGT+ P++   +G G+ISVG P+FNT+FT L++ + L++  + L+
Sbjct  353  LGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLV  412

Query  412  RWKSIEKTTFKWKLL--ALPMAVALSTGMIWQTIQKTHVHQIEIIPLVFVSLAIWLILTH  469
            RW + ++    +KLL  A+  ++ LS  + W   +K     I  +  V +++A W+ +  
Sbjct  413  RW-GRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDK-----IIAMTAVGMAMACWIAVLA  466

Query  470  L--PYLHFMWQIRPL----AMRLAHTGFAICVIGAMMNSFYGDEMGVRMKPNDHAELAGV  523
            +  +  +  +  +      +M  AH G+A+ + G   +  Y+ E +VRM++ D   + + 
Sbjct  467  VAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  524  KFHYRHFDNEIGQNYTAEVATFDILNSENHLLASVKPERRYYDVRTMTMAEVGLYHHGVD  583
            +F +R+  +  G NY + VA +++   + +  A + +E+R Y+   M M+E ++      
Sbjct  527  RFTFREVRDITGPNYRGGVALIGV-TRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTR  585

Query  584  DIYIVMGDKLGIKEYAFRLHYKPYVRLLW  612
            D+Y  +G+ L+    A RL YKP+VR +W
Sbjct  586  DLYAALGEELDNGAWAVRLYYKPFVRWIW  614

562) GbCGDNIH1_0269 in NC_008343


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  326 bits (1224),  Expect = 3e-90, Method: Compositional matrix adjust.
 Identities = 263/576 (46%), Positives = 378/576 (66%), Gaps = 24/576 (4%)

Query  53   SFGALMWASVVNDFTVLNVAQNSQSAKPLLYRISGTWGNHEGSILLWCLILALCGGAVAA  112
            +F  L+ A VVNDFTV  VA NS++  P+ YR+++TWG HEGS+LLW L+++    AVA 
Sbjct  53   AFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAV  112

Query  113  FGRNLPSALRARVIGVLGASSVGFLLFSLIESNPFVRIWPA-PMEGSGMNPLLEDPGLAI  171
            F+R++P+ + ARV++V+G    GFL F L+ S PF R  PA P+EG ++NPLL+DPGL +
Sbjct  113  FSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIF  172

Query  172  HPPILYTGYVGFAIPFAFAVAALLEGRIDASWGRWVRPWALVSWAFLTCGIALGSWWAYY  231
            HPP+LY GYVGF+++FAFA+AALL GR+D++  R  RPW+L +W FLT GI LGS WAYY
Sbjct  173  HPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYY  232

Query  232  ELGWGGFWFWDPVENASLLPWLTGTALVHSAIVVEKREALKIWTVLLAIATFSLSLSGTF  291
            ELGWGG WFWDPVENAS++PWL+GTAL+HS  V E+R ++K WT+LL+I +FSL L GTF
Sbjct  233  ELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTF  292

Query  292  LVRSGILNSVHSFANDPARGVFilgllalvigsalllFVFRAPVLSVSGVFAPISREGSL  351
            LVRSG+L SVH+FA+DPARG+FIL+++ LV G++LLLF  R+  +      A  SRE+ L
Sbjct  293  LVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLL  352

Query  352  VLNNVLLCSIAAVVFTGTTYPLFAQLLFGAQISVGAPFFNATVMPLAIPVFIAMAVGPML  411
            + NNVLL +   VV+ GT  PL  + L  + ISVG PFFN+    L +P  + ++VGP++
Sbjct  353  LGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLV  412

Query  412  PWKRAR-------LWPalsrlwwaalvalaaglwgamgRQFLPALAFGCAGWLITGSFAD  464
             W R R       LW+A+      +++         ++     ++A +C  W+   + A+
Sbjct  413  RWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMT-AVGMAMAC--WIAVLAVAE  469

Query  465  IIERIKLFRVPPRTSFARLGGVPRSAWGAAIAHAGLGITICGIA-AMSMAQQTIVAVKPG  523
             ++R+           +R    + S WG   AH GL++TI GIA + + + +  V +++G
Sbjct  470  AVQRV-----------SRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAG  518

Query  524  QSTELGGYRWTLDSITDAPGPNYVARVATITVTSQGHLVTVLTPSRRAYPVQRQNTTDTS  583
            +S  + +YR T+  + D  GPNY + VA I VT +G+  +VL + +R Y   R   T+++
Sbjct  519  DSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAA  578

Query  584  IQTNGLRDLYAVLGEERDGTA-VLRLHVNPLAPWIW  618
            I+    RDLYA LGEE D  A  +RL  +P+  WIW
Sbjct  579  IDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

563) LHK_02091 in NC_012559


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  325 bits (1219),  Expect = 6e-90, Method: Compositional matrix adjust.
 Identities = 309/553 (56%), Positives = 416/553 (76%), Gaps = 5/553 (0%)

Query  67   NDFSVRYVVqqsssqLPLVYRLAAVWGGHEGSlllwllllcvwtlavalcSRSLDDAMRA  126
            NDF+V YV  +S++QLP+ YR+AA WG+HEGSLLLW+LL+  WTLAVA+ SR +   + A
Sbjct  64   NDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVA  123

Query  127  RLVaimgliaagfgfflllTSNPFAR-LDIPAVEGRELNPMLQDPGLIVHPPLLYMGYvg  185
            R++A+MG++ AGF  F+L+TS PFAR L   +VEGR+LNP+LQDPGLI HPPLLYMGYVG
Sbjct  124  RVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVG  183

Query  186  favafamalaglmaGRIDAAWARFARPWTTLAWVNLTAGIAVGSLWAYYELGWGGWWFWD  245
            F+VAFA A+A+L++GR+D+A +RFARPWT  AWV LT GI +GS WAYYELGWGGWWFWD
Sbjct  184  FSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWD  243

Query  246  PVENASFMPWLAGTALMHSLAATEKRGVFKSWTVllailtfslsllgtflVRSGVLSSVH  305
            PVENASFMPWLAGTAL+HS+A TE+R+ FK+WT+LL+I +FSL LLGTFLVRSGVL SVH
Sbjct  244  PVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVH  303

Query  306  AFASDPGRgvfilallavvvgvslvlfavRAPDLTSTAGFAPLSRESlllannvllcvaT  365
            AFASDP+RG+FILA++ +V G SL+LFAVR+  + S    A  SRESLLL+NNVLL  A 
Sbjct  304  AFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAM  363

Query  366  ASVLLGTLYPLMVDALNLGKLSVGPPYFNAVFIPVMLPLLLLIGPGSVVRWKRQAGMELV  425
              VLLGTL PL+   L LG +SVG P+FN++F  +M+P+ LL+G G++VRW R+   ++ 
Sbjct  364  LVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIR  423

Query  426  KGLWHVLLASAVLAIV--WSGTlapfsplvalalfaalwiilgalwdllRRWRAGQRPGL  483
            K LW  ++++ VL+++  W      ++        A    +L+    + R  R G + +L
Sbjct  424  KLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSR-GTKTSL  482

Query  484  ATLGMHLAHVGVAVTVIGIALTSGYERERDVRLAAGGSATLGAYRFTLEDIGDSNGPNYL  543
            +  GM  AH+G+AVT+ GIA++  Y  ERDVR+ AG+S T+  YRFT+ ++ D  GPNY 
Sbjct  483  SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYR  542

Query  544  GVTARLTVTDNGAPLAVLTPEKRIYASMPGMPMTEASIHAGFFNHVYVALADQLEDGSWG  603
            G  A + VT +G P AVL +EKR+Y + + M MTEA+I++G+  ++Y AL+++L++G+W+
Sbjct  543  GGVALIGVTRHGEPEAVLHAEKRLYNT-SRMVMTEAAIDGGLTRDLYAALGEELDNGAWA  601

Query  604  VRLYHKPFVGWIW  616
            VRLY KPFV WIW
Sbjct  602  VRLYYKPFVRWIW  614

564) EIO_2101 in NC_014625


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  324 bits (1216),  Expect = 9e-90, Method: Compositional matrix adjust.
 Identities = 242/509 (48%), Positives = 355/509 (70%), Gaps = 14/509 (2%)

Query  4    FGGDLPERLRARVLAVQASISVAFYAFTLFTSNPFERMVIA-PLNGQDLNPLLQDPGLAY  62
            F+ ++P  + ARVLAV + +  +F AF LFTS PF R + A P++G+DLNPLLQDPGL +
Sbjct  113  FSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIF  172

Query  63   HPPFLYLGYVGFSVAFSFAIAALIEGKVDAAWGRWVRPWTLAAWSFLTVGIALGSWWAYY  122
            HPP+LY+GYVGFSVAF+FAIAAL+ G++D+A  R  RPWTLAAW FLT+GI LGS WAYY
Sbjct  173  HPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYY  232

Query  123  ELGWGGFWFWDPVENASFMPWLIGAALLHSAIVVEKREALKSWTVLLAILAFGFSLLGTF  182
            ELGWGG WFWDPVENASFMPWL G+ALLHS  V E+R ++K+WT+LL+I AF++ LLGTF
Sbjct  233  ELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTF  292

Query  183  IVRSGTLTSVHAFASDPARGSVMLAIMGFYLGGGLTLYAARASAMEAKGVFSLVSRESal  242
            +VRSG L SVHAFASDPARG  +LA+M +  GG+L L+A R+  + ++   +L SRES L
Sbjct  293  LVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLL  352

Query  243  vmnnvllavaafvvlIGTIWPLVTEVIG-RTVSVGPPFFNAAFTPFMIALSIILPLGSVL  301
            + NNVLL  A +VVL+GT+ PLV   +G  ++SVG PFFN+ FT +M++++++L +G+++
Sbjct  353  LGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLV  412

Query  302  AWKRGTLGKALQQMWGaavla-falmalaWVMTGGSTILAPIGVLLGTwvvaasavdvwa  360
             W R+   +  + +W+A V +    + L+W++ +    ++++G+ ++ W+   +  +   
Sbjct  413  RWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQ  472

Query  361  RTGRGDIRGRLSRLTRLPRADWGKAVSHIGFGATILGVALSLSL-VKEDIRVMNIGDTFE  419
            R +RG         T+ + + WG   +H+G++ TI G+A+S +  V  D+R M  GD+  
Sbjct  473  RVSRG---------TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVR-MRAGDSVT  522

Query  420  LGNYTFNLTAVNELQGPNYLTTMADVTISRDGQEVASLHPEKRFYPFAGMPTTEAGISSN  479
            + +Y F +  V ++ GPNY   +A + ++R+G+  A LH+EKR+Y  + M  TEA+I + 
Sbjct  523  IHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGG  582

Query  480  LLRDVYVVLGDPQVGGGYAMRSYIKPFVN  508
            L RD+Y  LG+    G+ A+R Y KPFV 
Sbjct  583  LTRDLYAALGEELDNGAWAVRLYYKPFVR  611

565) ccmF in NC_013854


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  322 bits (1206),  Expect = 7e-89, Method: Compositional matrix adjust.
 Identities = 271/561 (49%), Positives = 390/561 (70%), Gaps = 13/561 (2%)

Query  62   VVSDFSVLNVVQNSHSAKPMLYKVSGVWGNHEGSMMLWIVMLTVFGAAVALFGRNLPPTL  121
            VV+DF+V  V  NS++  P+ Y+V++ WG HEGS++LW+++++    AVA+F+R++P+ +
Sbjct  62   VVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADI  121

Query  122  KARVLAVQgligvgfllfiliTSNPFIRVVPA-PIDGNDLNPLLQDPGLAFHPPFLYAGY  180
             ARVLAV G++  GFL FIL+TS PF R +PA P++G DLNPLLQDPGL FHPP+LY GY
Sbjct  122  VARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGY  181

Query  181  VGFSMAFSFAVAALIEGRVDPAWARWVRPWTLAAWSMLTMGIAMGSwwayyelgwggwwy  240
            VGFS+AF+FA+AAL+ GR+D+A +R  RPWTLAAW  LT+GI +GS WAYYELGWGGWW+
Sbjct  182  VGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWF  241

Query  241  wDPVENASFMPWLAGTALLHSAIVVEKRDALKSWTILLAIVTFSLSLMGTFLVRSGILTS  300
            WDPVENASFMPWLAGTALLHS  V E+R ++K+WT+LL+I +FSL L+GTFLVRSG+L S
Sbjct  242  WDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVS  301

Query  301  VHAFAVDPRRGIFILALLAVATGGSLLLYSLRAPTLKAGGLFAPISREGalvlnnlllst  360
            VHAFA DP RG+FILA++ + TGGSLLL+++R+  +++    A  SRE+ L+ NN+LL +
Sbjct  302  VHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMA  361

Query  361  atatvFIGTLYPLFLDIMKLGKVSVGAPFFNATFVPIAIPMVIAMVVGPFLSWKRADLGA  420
            A   V++GTL PL    + LG +SVG PFFN+ F  + +P  + + VGP++ W R     
Sbjct  362  AMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRN  421

Query  421  ALTRLWvagaaavaavavtayvqagggPLLALVGMALAAWAFVGSLVEFAERIALFRTSF  480
                LW A  +++    + + +  +    ++ VGMA+A W  V ++ E  +R++      
Sbjct  422  IRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS------  475

Query  481  RNSWNRAAHLPRSAWGMTIAHACLGLSILGMTGTSAWQTESITAMRPGDRAMLAGYEFRF  540
                 R++  + S WGM  AH  L+++I G++ +     E    MR+GD   + +Y F F
Sbjct  476  -----RGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTF  530

Query  541  DSVGLVDGPNFKAERGVFTVTRDGRPVATLEPERRSYtttrmtttESAIHTTVFSDLYVA  600
              V  + GPN+++  +++ VTR+G P A L++E+R Y T+RM  TE+AI+  +  DLY A
Sbjct  531  REVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAA  590

Query  601  LGDPTQNGTAWIVRIYHHPLV  621
            LG+  +NG AW VR+Y  P+V
Sbjct  591  LGEELDNG-AWAVRLYYKPFV  610

566) Psesu_1267 in NC_014924


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  321 bits (1203),  Expect = 1e-88, Method: Compositional matrix adjust.
 Identities = 318/618 (52%), Positives = 433/618 (71%), Gaps = 26/618 (4%)

Query  30   RGDARLMAVARPASYAQLVLVGGAFALLTWAFVSQDFSVRYVATNSNSLLPMVYRYTAVW  89
            RGDAR+MA A   +   ++ V+GAF +L  AFV +DF+V YVA NSN+ LP+ YR +A W
Sbjct  30   RGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATW  89

Query  90   GSHEGSlllwvlvlcvwNALMAALSTHLPQTVVARVLGTLGIVACGFLAFLVFTSNPFER  149
            G+HEGSLLLWVL++  W   +A +S ++P  +VARVL+ +G+V  GFLAF++FTS PF R
Sbjct  90   GAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFAR  149

Query  150  LLPA-AMEGRDLNPLLQDPGMIIHPPMQYVGWAGFSIPFAFAIAALLDGRIDARWLRWVR  208
             LPA ++EGRDLNPLLQDPG+I+HPP+ Y+G  GFS++FAFAIAALL GR+D+   R  R
Sbjct  150  TLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFAR  209

Query  209  PWTNVAWAFLTVGIALGSWWAYYELGWGGWWFWDPVENAAFMPWLVGAALIHSQAVTEKR  268
            PWT  AW FLT+GI LGS WAYYELGWGGWWFWDPVENA+FMPWL G+AL+HS AVTE+R
Sbjct  210  PWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQR  269

Query  269  GSFAGWTlllaiaafslslMGTFLVRSGVLTSVHAFAADPSRglfiliflglviggslll  328
            ++F +WTLLL+I AFSL L+GTFLVRSGVL SVHAFA+DP+RG+FIL F+ LV GGSLLL
Sbjct  270  AGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLL  329

Query  329  yalragrleagagFQPVSRETllllnnlllASACAMILLGTLYPLLADALDLGKISVGPP  388
            +A+R+ R+ +       SRE+LLL NN+LL +A  ++LLGTL PL+   L+LG ISVG P
Sbjct  330  FAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEP  389

Query  389  YFgllffvliapllalvplgplaRWQREQPSKLA-------------AALLPWLGMALVA  435
            +F  +F  L+ P+  L+ +GPL RW R++P ++              + LLPWL    + 
Sbjct  390  FFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKII  449

Query  436  GVAAYFTAPQgawktavgvagaawvglgtlHFAWARLRNSGRLTAEMWGMvlahlglavf  495
            +++A   A            +              R+  + + +   WGMV AHLGLAV 
Sbjct  450  AMTAVGMAMACWIAVLAVAEAV------------QRVSRGTKTSLSYWGMVAAHLGLAVT  497

Query  496  vvgallveaQNVQREVALKPGQRLEVGRYAFEFQGVDQLQGPNYLADRGHVQVLRDERPL  555
            + G  + +  +V+R+V +++G+ + +  Y F F+ V ++ GPNY ++ + + V R+  P 
Sbjct  498  ITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPE  557

Query  556  VLLHPEKRAYASGGQVMTEAGIRPGVTADVYVALGESLGDGAWAVRVHIKPFVRWIWgga  615
             +LH+EKR Y ++  VMTEA+I  G+T D+Y ALGE L++GAWAVR+  KPFVRWIW+G+
Sbjct  558  AVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGG  617

Query  616  almalgglvaagDRRFRR  633
             LMALGGL+  +D R+RR
Sbjct  618  LLMALGGLLCLADPRYRR  635

567) Sbal195_4003 in NC_009997


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  321 bits (1205),  Expect = 8e-89, Method: Compositional matrix adjust.
 Identities = 263/652 (41%), Positives = 432/652 (67%), Gaps = 44/652 (6%)

Query  4    MLPEIGHILLIISTVIALLSAMVPLVGIYRDNAYLTGYSPALFRALFTSISAALLCLIYS  63
            M+PE GH LL ++  +ALL ++ PL G+ R++A + + +  + + LF  +++A++ L+ +
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  64   FISDDFSVAYVANHSNSQLALGYKVAAVWGSHEGSMLFWVFAIALWGAIISYRLPITDCT  123
            F+ +DF+VAYVA +SN+QL++ Y+VAA WG+HEGS+L+WV+ ++ W       L+++  +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT------LAVAVFS  114

Query  124  QAKASNQYQDAVYFARLLAILSLVILGFNLFLLFTSNPFARLLPNIPIEGRDLNPILQDI  183
            +  +++        AR+LA++++V  GF  F+LFTS PFAR LP +P+EGRDLNP+LQD 
Sbjct  115  RQVPADI------VARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDP  168

Query  184  GLILHPPMLFLGYVGLTVCFAAALASLLGGKFNARQVNHLKPWVLLAWIFLTGGNAFGSW  243
            GLI+HPP+L++GYVG++V FA A+A+LL+G++++      +PW L AW+FLT G  +GS 
Sbjct  169  GLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSA  228

Query  244  WAYNELGWGGWWFWDPVENASFIPWLVATALVHSIVLTKRTNGFQITTlllcilafslsl  303
            WAY ELGWGGWWFWDPVENASF+PWL +TAL+HS+ +T +  GF+  TLLL I AFSL L
Sbjct  229  WAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCL  288

Query  304  lgsflVRSGIVQSVHAFAADPTRGMSilcllilfigaallifalkaNNLRHSVQHAIFSK  363
            LG+FLVRSG++ SVHAFA+DP+RGM IL +++L  G++LL+FA++++ +R  V++A+ S+
Sbjct  289  LGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSR  348

Query  364  ETllllgivilvvAAFSVLLGTFYPLIYELLGLGTLSVGAPYFNAIFVPLTFLLVLLMGV  423
            E+LLL   V+L+ A + VLLGT+ PL+   LGLG++SVG P+FN++F  L   + LL+GV
Sbjct  349  ESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGV  408

Query  424  APLAHWQKTSKAQVKPLI---IPGTLILISAL-WISLQAATGNSlflllgtaaalwllvc  479
            +PL +W +    +++ L+   +  TL+L   L W+  +   + +                
Sbjct  409  GPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMT----------------  452

Query  480  llltliaalglNKQTHQHKQSVKDAVNMAKPTSKR--RFMAMLLAHLGVAVTIIGATAVS  537
                   A+G+         +V +AV+     +K    + +M+ AHLG+AVTI G +   
Sbjct  453  -------AVGMAMACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQ  505

Query  538  FFEQEALLRMGPGQGKPLAGYVLVYESTENIETKSFTAIQANISIRDAAQDELVLNYLTP  597
             +  E  +RM +G++  + +Y + +    +I   ++ +  A I++   ++ E VL+   +
Sbjct  506  NYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLH---A  562

Query  598  QRQTFKSNAMEMSHAGIDHGLWRDIYVSMGLQLSDNEYLIRISYKPLASWIW  649
            +++ ++++ M M++A+ID GL RD+Y ++G +L +    +R+ YKP+  WIW
Sbjct  563  EKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

568) Sbal678_4034 in NC_016901


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  321 bits (1205),  Expect = 8e-89, Method: Compositional matrix adjust.
 Identities = 263/652 (41%), Positives = 432/652 (67%), Gaps = 44/652 (6%)

Query  4    MLPEIGHILLIISTVIALLSAMVPLVGIYRDNAYLTGYSPALFRALFTSISAALLCLIYS  63
            M+PE GH LL ++  +ALL ++ PL G+ R++A + + +  + + LF  +++A++ L+ +
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  64   FISDDFSVAYVANHSNSQLALGYKVAAVWGSHEGSMLFWVFAIALWGAIISYRLPITDCT  123
            F+ +DF+VAYVA +SN+QL++ Y+VAA WG+HEGS+L+WV+ ++ W       L+++  +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWT------LAVAVFS  114

Query  124  QAKASNQYQDAVYFARLLAILSLVILGFNLFLLFTSNPFARLLPNIPIEGRDLNPILQDI  183
            +  +++        AR+LA++++V  GF  F+LFTS PFAR LP +P+EGRDLNP+LQD 
Sbjct  115  RQVPADI------VARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDP  168

Query  184  GLILHPPMLFLGYVGLTVCFAAALASLLGGKFNARQVNHLKPWVLLAWIFLTGGNAFGSW  243
            GLI+HPP+L++GYVG++V FA A+A+LL+G++++      +PW L AW+FLT G  +GS 
Sbjct  169  GLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSA  228

Query  244  WAYNELGWGGWWFWDPVENASFIPWLVATALVHSIVLTKRTNGFQITTlllcilafslsl  303
            WAY ELGWGGWWFWDPVENASF+PWL +TAL+HS+ +T +  GF+  TLLL I AFSL L
Sbjct  229  WAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCL  288

Query  304  lgsflVRSGIVQSVHAFAADPTRGMSilcllilfigaallifalkaNNLRHSVQHAIFSK  363
            LG+FLVRSG++ SVHAFA+DP+RGM IL +++L  G++LL+FA++++ +R  V++A+ S+
Sbjct  289  LGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSR  348

Query  364  ETllllgivilvvAAFSVLLGTFYPLIYELLGLGTLSVGAPYFNAIFVPLTFLLVLLMGV  423
            E+LLL   V+L+ A + VLLGT+ PL+   LGLG++SVG P+FN++F  L   + LL+GV
Sbjct  349  ESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGV  408

Query  424  APLAHWQKTSKAQVKPLI---IPGTLILISAL-WISLQAATGNSlflllgtaaalwllvc  479
            +PL +W +    +++ L+   +  TL+L   L W+  +   + +                
Sbjct  409  GPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMT----------------  452

Query  480  llltliaalglNKQTHQHKQSVKDAVNMAKPTSKR--RFMAMLLAHLGVAVTIIGATAVS  537
                   A+G+         +V +AV+     +K    + +M+ AHLG+AVTI G +   
Sbjct  453  -------AVGMAMACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQ  505

Query  538  FFEQEALLRMGPGQGKPLAGYVLVYESTENIETKSFTAIQANISIRDAAQDELVLNYLTP  597
             +  E  +RM +G++  + +Y + +    +I   ++ +  A I++   ++ E VL+   +
Sbjct  506  NYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLH---A  562

Query  598  QRQTFKSNAMEMSHAGIDHGLWRDIYVSMGLQLSDNEYLIRISYKPLASWIW  649
            +++ ++++ M M++A+ID GL RD+Y ++G +L +    +R+ YKP+  WIW
Sbjct  563  EKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

569) cycK in NC_009445


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  320 bits (1202),  Expect = 1e-88, Method: Compositional matrix adjust.
 Identities = 283/627 (46%), Positives = 414/627 (67%), Gaps = 18/627 (2%)

Query  1    MIAESGHYalvlalalalIQSTVPMLGAHQRDVALMNVGRSAALAQLLFAGLS--FIALI  58
            M++E GH  L LAL++AL+ S  P+ G  + D  +M  + ++ +A LLF  ++  F+ L+
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMM--ASAGVFAWLLFICVAGAFFVLV  58

Query  59   TLHVTSDFSVANVFENSHSMKPLLYKITGVWGNHEGSMLLWVSILALFGAMVAAFGNNLP  118
               V +DF+VA V  NS++  P+ Y++++ WG HEGS+LLWV +++     VA F+ ++P
Sbjct  59   HAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVP  118

Query  119  LSLRARVLSVQAWVASAFYLFILTTSNPFAR-LANPPIEGRDLNPVLQDIGLAVHPPMLY  177
              + ARVL+V + V ++F  FIL TS PFAR L+  P+EGRDLNP+LQD GL  HPP+LY
Sbjct  119  ADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLY  178

Query  178  LGYVGFSISFSFAIAALIEGRIDAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGG  237
            +GYVGFS++F+FAIAAL+ GR+D+A +R  RPWTL AW+FLTLGI +GS WAYYELGWGG
Sbjct  179  MGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGG  238

Query  238  WWFWDPVENASLMPWLAGTALLHSALVMEKRNALKVWtillsiltfslsllgtflVRSGV  297
            WWFWDPVENAS+MPWLAGTALLHS  V E+R ++K WT+LLSI +FSL LLGTFLVRSGV
Sbjct  239  WWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGV  298

Query  298  ITSVHAFASDPTRGVFILGILVLFIGGSLTLFAGRATALKQGGLFAPISREGALVLNNLL  357
            + SVHAFASDP+RG+FIL+++VL  GGSL LFA R+  ++     A  SRE+ L+ NN+L
Sbjct  299  LVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVL  358

Query  358  LTVSCATVLFGTLYPVIMETLDF-KLSVGAPFYNltfgplfallllIVPFGPMLAWKRGD  416
            L  +   VL+GTL P++   L++  +SVG PF+N  F  L   + L++  GP++ W R+ 
Sbjct  359  LMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR  418

Query  417  LVAATQRLLAAGVVSLVaiaiawawaRGG-SALAPLGIGLGVFVITGAIVDLVERSGITR  475
                 + L AA V +LV   +      +   A++++G++++  +   A+ + V+R  ++R
Sbjct  419  PRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQR--VSR  476

Query  476  VPFKTALHRTRGLPRSVWGTAFAHAGLGVALLGIVCETTWNSELISTLRPGDMRNLAGYQ  535
               KT+L        S WG   AH GL+V++ GI      + E    +R+GD   + +Y+
Sbjct  477  GT-KTSL--------SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  536  IKFDGMTQRQGPNFTEVISTFVVSEDGRQLAVMTPSKRSFATRGMSTTEAALLTRGVSQL  595
            + F  + +  GPN+   ++ + V+ +G   AV+ + KR + T  M  TEAA+      +L
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  596  YVSLGDTTADGGLAVRIYHKPLVLLIW  622
            Y +LG+   +G+ AVR+Y KP+V  IW
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIW  614

570) Swoo_4478 in NC_010506


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  320 bits (1202),  Expect = 1e-88, Method: Compositional matrix adjust.
 Identities = 260/620 (42%), Positives = 418/620 (68%), Gaps = 12/620 (1%)

Query  1    MIPELGLIFLIISTVSALLLSFIPLYAAYTKNSYLFSYVKTLTALMTITICASILCLLAS  60
            M+PE G  +L ++   ALLLS  PL +    ++ + +    ++ L+ I + ++++ L+ +
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FLMDDFSVAYVANHSNTQLATLYKVAAVWGSHEGSMLFWMVSIAIWG-CIIVFSPRYQDR  119
            F+++DF+VAYVA +SNTQL+  Y+VAA WG+HEGS+L+W++ ++ W   + VFS +    
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  120  LFIGRMIAILAFVIAGFNLFMLFTSNPFARLLPNFPIEGRDLNPILQDIGLIFHPPMLFL  179
            + ++R++A+++ V AGF  F+LFTS PFAR LP FP+EGRDLNP+LQD GLIFHPP+L++
Sbjct  121  I-VARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYM  179

Query  180  GYVgltitfaaaiaallggKFTQQHASYLRPWVLMAWVFLTGGNAFGSWWAYNELGWGGW  239
            GYVG++++FA AIAALL+G++    + + RPW L AWVFLT G  +GS WAY ELGWGGW
Sbjct  180  GYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGW  239

Query  240  WFWDPVENASFIPWLVATALLHSVVLSQQRSsfrvttlllcllafslsllgtflVRSGIV  299
            WFWDPVENASF+PWL +TALLHS+ +++QR++F+  TLLL + AFSL LLGTFLVRSG++
Sbjct  240  WFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVL  299

Query  300  QSVHAFASDPTRGMSILFLLGVFVCGALTLFALKANLIKSKSEFALLSRDTVILLGNivl  359
             SVHAFASDP+RGM IL ++ +   G+L LFA++++ ++S+ + AL SR++++L  N++L
Sbjct  300  VSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLL  359

Query  360  vvaaisvllGTFYPLLFELLNLGTLSVGAPYFNSIFVPLTFVAVLLMGAAPLIKWQQQSL  419
            + A + VLLGT+ PL+   L LG++SVG P+FN++F  L     LL+G +PL++W ++  
Sbjct  360  MAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRP  419

Query  420  NCLYPla-alfalaaTIGVLVAMQTRDGFNPWVWLGATAASWVFFTLGYLVFSLRSQGAA  478
              +  L  A    +  ++VL++    D + +   +G + A W+    + L  +   Q  +
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI----AVLAVAEAVQRVS  475

Query  479  AITKKV----AMMIAHFGVAITIIGATAVSNFETQELLRMGPGQGKVVAGYTFVYEDTAD  534
              TK      +M+ AH+G+A+TI G +   N+  +  +RM +G++  + +Y F + +  D
Sbjct  476  RGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRD  535

Query  535  VDTKSYTAIQANIRVTDVDDNFVGYITPQRQTFKTNAMEVSKAGIMRNLVRDLYVSSGQQ  594
            +   +Y +  A I VT  ++   + + ++++ ++T+ M ++ A+I   L RDLY + G++
Sbjct  536  ITGPNYRGGVALIGVTRHGEP-EAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  595  LSDTEYLVRISHKPLACWIW  614
            L +    VR+  KP+  WIW
Sbjct  595  LDNGAWAVRLYYKPFVRWIW  614

571) Nwi_1193 in NC_007406


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  319 bits (1196),  Expect = 4e-88, Method: Compositional matrix adjust.
 Identities = 288/626 (47%), Positives = 413/626 (66%), Gaps = 15/626 (2%)

Query  1    MIAEAGHFALVLALGLALIQSVVPIIGARLHDGALMNVARSTalaqllfvaasffalatl  60
            M++E GH  L LALG+AL+ SV P+ G    D+ +M  A   A   ++ VA++FF L   
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   YVVSDFSVLNVFQNSHSLKPMIYKITGVWGNHEGSMLLWVTILALFGGLVAAFGNNLPLT  120
            +VV+DF+V  V  NS++  P+ Y++++ WG HEGS+LLWV +++     VA F+ ++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRAHVLAVQGWVATAFYLFILLTSNPFTRIASP-PMEGRDLNPVLQDIGLAVHPPMLYLG  179
            + A+VLAV G V ++F  FIL+TS PF+R  ++ P+EGRDLNP+LQD GL  HPP+LY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSIAFSFAVAALIEGRIDAAWARWVRPWTLVAWIFLTLGIAMGSYWAYYELGWGGWW  239
            YVGFS+AF+FA+AAL+ GR+D+A +R  RPWTL AW+FLTLGI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLAGTALLHSSVVMEKRNALKVWtillailtfslsllgtflVRSGVLT  299
            FWDPVENAS+MPWLAGTALLHS  V E+R ++K WT+LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFATDPTRGVFILLILCTFIGGSLTLFIWRASTLKQGGLFAPVSREGALVLNNLFLT  359
            SVHAFA+DP+RG+FIL ++    GGSL LF  R+  ++     A  SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  TACATVFVGTLYPLALEVITGNRISVGAPFFNLTFAPLFVPLLIAVPFGPLLAWKRGDLL  419
            +A   V++GTL PL    +    ISVG PFFN  F+ L VP+ + +  GPL+ W R D  
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR-DRP  419

Query  420  GASQRLiaagvgsviavavLWAWTRGGSTFAPLAIGLAV--FVIIGALCDLAERVNLFRA  477
               ++L+ A+V + + ++VL +W   +  +A  A+G+A+   + + A+ +  +RV+    
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS----  475

Query  478  SLPVSLRRAKGLPRSAWGTVFAHAGLGVALIGIVCETTWNTEYIASMKINDVARVGGYSL  537
                   R+   + S WG V AH GL+V++ GI      + E    M+  D   + +Y +
Sbjct  476  -------RGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRF  528

Query  538  TFEGTTQHQRSNYREDIARFTVSRDGQPIAVMMPSKRNFTTRAASTTEAALLTRGASQLY  597
            TF    +   +NYR ++A + V+R+G+P AV+ + KR + T     TEAA+    + +LY
Sbjct  529  TFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLY  588

Query  598  ISLGEATADGSIAVRIYHKPMVLLIW  623
             +LGE   +G+ AVR+Y KP V  IW
Sbjct  589  AALGEELDNGAWAVRLYYKPFVRWIW  614

572) BAA13334_I02972 in NC_016795


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  317 bits (1190),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 283/628 (46%), Positives = 420/628 (67%), Gaps = 18/628 (2%)

Query  1    MSVEIGHFALVLALALSIVQSIVPVVGAHRRDAQLMAVAVPTALAVFALIVLASAALIHA  60
            M  E GH  L LAL+++++ S+ P+ G  R DA++MA A   A  +F  +  A   L+HA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   YVVSDFSVLNVVENSHSQKPLLYKITGVWGNHEGSMLLWVFILTLFSALVAAFSGNLPET  120
            +VV+DF+V  V  NS++Q P+ Y++++ WG HEGS+LLWV++++  +  VA FS ++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRANVLAVQGWIGTAFLAFIIFTSNPFTRIFPA-PMEGGDLNPVLQDIGLAIHPPLLYLG  179
            + A VLAV G + ++FLAFI+FTS PF+R +PA P+EG DLNP+LQD GL +HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVCFSFAVAALLEGRLDAAWARWVRPWALMAWMFLTGGIAMGSYWAYYELGWGGWW  239
            YVGFSV F+FA+AALL GRLD+A +R  RPW+L AW+FLT GI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLVGTALLHSAIVMEKRSALKIWTVllailtfslsllgtflVRSGVLT  299
            FWDPVENAS+MPWL GTALLHS  V E+R+++K WT+LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFATDPGRglfilgilalfiggslslfALRVQSLSAGGIFHPISREGALVFNNLFLT  359
            SVH+FA+DP+RG+FIL+++ L  GGSL LFA+R + + +       SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  TAAATVLIGTLYPLLLEVTTGEKISVGAPFFNMTFGPLMVPLLFAVPFGPLLAWKRGDLY  419
            +A   VL+GTL PL+        ISVG PFFN  F  LMVP+ + +  GPL+ W R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  GVGQRLMTAFALSLAVVGIMLWRTSAHSVlaalgiglaawliFGSLTDLVLKAGIGKVS-  478
             + + L +A   +L +  ++ W      +  +      A      ++ L +  ++ +VS 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMA----CWIAVLAVAEAVQRVSR  476

Query  479  ASKAFARFKGLPRSVFGTSLAHIGLGLTLLGIVSVTTFGTENVLVMQPGGTAKVQNYTLR  538
            ++K+   + G+         AH+GL++T+ GI     ++ E  + M++G++  +++Y + 
Sbjct  477  GTKTSLSYWGMVA-------AHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  539  FEGLRPITGSNFTENRGAFTLLDSS--GRDLAVIEPSKRFFPARQMPTTESGIKTLWFSQ  596
            F  +R ITG+N+   RG+ +L++ +  G   AV+++ KR++ + +M  TE++I      +
Sbjct  530  FREVRDITGPNY---RGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  597  VYVALGDEPGNGAVVVRIWWKPLVTLIW  624
            +Y ALG+E +NGA  VR+  KP+V  IW
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIW  614

573) ccmF in NC_006932


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  317 bits (1190),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 283/628 (46%), Positives = 420/628 (67%), Gaps = 18/628 (2%)

Query  1    MSVEIGHFALVLALALSIVQSIVPVVGAHRRDAQLMAVAVPTALAVFALIVLASAALIHA  60
            M  E GH  L LAL+++++ S+ P+ G  R DA++MA A   A  +F  +  A   L+HA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   YVVSDFSVLNVVENSHSQKPLLYKITGVWGNHEGSMLLWVFILTLFSALVAAFSGNLPET  120
            +VV+DF+V  V  NS++Q P+ Y++++ WG HEGS+LLWV++++  +  VA FS ++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRANVLAVQGWIGTAFLAFIIFTSNPFTRIFPA-PMEGGDLNPVLQDIGLAIHPPLLYLG  179
            + A VLAV G + ++FLAFI+FTS PF+R +PA P+EG DLNP+LQD GL +HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVCFSFAVAALLEGRLDAAWARWVRPWALMAWMFLTGGIAMGSYWAYYELGWGGWW  239
            YVGFSV F+FA+AALL GRLD+A +R  RPW+L AW+FLT GI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLVGTALLHSAIVMEKRSALKIWTVllailtfslsllgtflVRSGVLT  299
            FWDPVENAS+MPWL GTALLHS  V E+R+++K WT+LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFATDPGRglfilgilalfiggslslfALRVQSLSAGGIFHPISREGALVFNNLFLT  359
            SVH+FA+DP+RG+FIL+++ L  GGSL LFA+R + + +       SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  TAAATVLIGTLYPLLLEVTTGEKISVGAPFFNMTFGPLMVPLLFAVPFGPLLAWKRGDLY  419
            +A   VL+GTL PL+        ISVG PFFN  F  LMVP+ + +  GPL+ W R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  GVGQRLMTAFALSLAVVGIMLWRTSAHSVlaalgiglaawliFGSLTDLVLKAGIGKVS-  478
             + + L +A   +L +  ++ W      +  +      A      ++ L +  ++ +VS 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMA----CWIAVLAVAEAVQRVSR  476

Query  479  ASKAFARFKGLPRSVFGTSLAHIGLGLTLLGIVSVTTFGTENVLVMQPGGTAKVQNYTLR  538
            ++K+   + G+         AH+GL++T+ GI     ++ E  + M++G++  +++Y + 
Sbjct  477  GTKTSLSYWGMVA-------AHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  539  FEGLRPITGSNFTENRGAFTLLDSS--GRDLAVIEPSKRFFPARQMPTTESGIKTLWFSQ  596
            F  +R ITG+N+   RG+ +L++ +  G   AV+++ KR++ + +M  TE++I      +
Sbjct  530  FREVRDITGPNY---RGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  597  VYVALGDEPGNGAVVVRIWWKPLVTLIW  624
            +Y ALG+E +NGA  VR+  KP+V  IW
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIW  614

574) BAbS19_I05930 in NC_010742


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  317 bits (1190),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 283/628 (46%), Positives = 420/628 (67%), Gaps = 18/628 (2%)

Query  1    MSVEIGHFALVLALALSIVQSIVPVVGAHRRDAQLMAVAVPTALAVFALIVLASAALIHA  60
            M  E GH  L LAL+++++ S+ P+ G  R DA++MA A   A  +F  +  A   L+HA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   YVVSDFSVLNVVENSHSQKPLLYKITGVWGNHEGSMLLWVFILTLFSALVAAFSGNLPET  120
            +VV+DF+V  V  NS++Q P+ Y++++ WG HEGS+LLWV++++  +  VA FS ++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRANVLAVQGWIGTAFLAFIIFTSNPFTRIFPA-PMEGGDLNPVLQDIGLAIHPPLLYLG  179
            + A VLAV G + ++FLAFI+FTS PF+R +PA P+EG DLNP+LQD GL +HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVCFSFAVAALLEGRLDAAWARWVRPWALMAWMFLTGGIAMGSYWAYYELGWGGWW  239
            YVGFSV F+FA+AALL GRLD+A +R  RPW+L AW+FLT GI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLVGTALLHSAIVMEKRSALKIWTVllailtfslsllgtflVRSGVLT  299
            FWDPVENAS+MPWL GTALLHS  V E+R+++K WT+LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFATDPGRglfilgilalfiggslslfALRVQSLSAGGIFHPISREGALVFNNLFLT  359
            SVH+FA+DP+RG+FIL+++ L  GGSL LFA+R + + +       SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  TAAATVLIGTLYPLLLEVTTGEKISVGAPFFNMTFGPLMVPLLFAVPFGPLLAWKRGDLY  419
            +A   VL+GTL PL+        ISVG PFFN  F  LMVP+ + +  GPL+ W R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  GVGQRLMTAFALSLAVVGIMLWRTSAHSVlaalgiglaawliFGSLTDLVLKAGIGKVS-  478
             + + L +A   +L +  ++ W      +  +      A      ++ L +  ++ +VS 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMA----CWIAVLAVAEAVQRVSR  476

Query  479  ASKAFARFKGLPRSVFGTSLAHIGLGLTLLGIVSVTTFGTENVLVMQPGGTAKVQNYTLR  538
            ++K+   + G+         AH+GL++T+ GI     ++ E  + M++G++  +++Y + 
Sbjct  477  GTKTSLSYWGMVA-------AHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  539  FEGLRPITGSNFTENRGAFTLLDSS--GRDLAVIEPSKRFFPARQMPTTESGIKTLWFSQ  596
            F  +R ITG+N+   RG+ +L++ +  G   AV+++ KR++ + +M  TE++I      +
Sbjct  530  FREVRDITGPNY---RGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  597  VYVALGDEPGNGAVVVRIWWKPLVTLIW  624
            +Y ALG+E +NGA  VR+  KP+V  IW
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIW  614

575) ccmF in NC_012441


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  317 bits (1190),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 283/628 (46%), Positives = 420/628 (67%), Gaps = 18/628 (2%)

Query  1    MSVEIGHFALVLALALSIVQSIVPVVGAHRRDAQLMAVAVPTALAVFALIVLASAALIHA  60
            M  E GH  L LAL+++++ S+ P+ G  R DA++MA A   A  +F  +  A   L+HA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   YVVSDFSVLNVVENSHSQKPLLYKITGVWGNHEGSMLLWVFILTLFSALVAAFSGNLPET  120
            +VV+DF+V  V  NS++Q P+ Y++++ WG HEGS+LLWV++++  +  VA FS ++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRANVLAVQGWIGTAFLAFIIFTSNPFTRIFPA-PMEGGDLNPVLQDIGLAIHPPLLYLG  179
            + A VLAV G + ++FLAFI+FTS PF+R +PA P+EG DLNP+LQD GL +HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVCFSFAVAALLEGRLDAAWARWVRPWALMAWMFLTGGIAMGSYWAYYELGWGGWW  239
            YVGFSV F+FA+AALL GRLD+A +R  RPW+L AW+FLT GI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLVGTALLHSAIVMEKRSALKIWTVllailtfslsllgtflVRSGVLT  299
            FWDPVENAS+MPWL GTALLHS  V E+R+++K WT+LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFATDPGRglfilgilalfiggslslfALRVQSLSAGGIFHPISREGALVFNNLFLT  359
            SVH+FA+DP+RG+FIL+++ L  GGSL LFA+R + + +       SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  TAAATVLIGTLYPLLLEVTTGEKISVGAPFFNMTFGPLMVPLLFAVPFGPLLAWKRGDLY  419
            +A   VL+GTL PL+        ISVG PFFN  F  LMVP+ + +  GPL+ W R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  GVGQRLMTAFALSLAVVGIMLWRTSAHSVlaalgiglaawliFGSLTDLVLKAGIGKVS-  478
             + + L +A   +L +  ++ W      +  +      A      ++ L +  ++ +VS 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMA----CWIAVLAVAEAVQRVSR  476

Query  479  ASKAFARFKGLPRSVFGTSLAHIGLGLTLLGIVSVTTFGTENVLVMQPGGTAKVQNYTLR  538
            ++K+   + G+         AH+GL++T+ GI     ++ E  + M++G++  +++Y + 
Sbjct  477  GTKTSLSYWGMVA-------AHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  539  FEGLRPITGSNFTENRGAFTLLDSS--GRDLAVIEPSKRFFPARQMPTTESGIKTLWFSQ  596
            F  +R ITG+N+   RG+ +L++ +  G   AV+++ KR++ + +M  TE++I      +
Sbjct  530  FREVRDITGPNY---RGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  597  VYVALGDEPGNGAVVVRIWWKPLVTLIW  624
            +Y ALG+E +NGA  VR+  KP+V  IW
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIW  614

576) BAB1_0633 in NC_007618


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  317 bits (1190),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 283/628 (46%), Positives = 420/628 (67%), Gaps = 18/628 (2%)

Query  1    MSVEIGHFALVLALALSIVQSIVPVVGAHRRDAQLMAVAVPTALAVFALIVLASAALIHA  60
            M  E GH  L LAL+++++ S+ P+ G  R DA++MA A   A  +F  +  A   L+HA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   YVVSDFSVLNVVENSHSQKPLLYKITGVWGNHEGSMLLWVFILTLFSALVAAFSGNLPET  120
            +VV+DF+V  V  NS++Q P+ Y++++ WG HEGS+LLWV++++  +  VA FS ++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRANVLAVQGWIGTAFLAFIIFTSNPFTRIFPA-PMEGGDLNPVLQDIGLAIHPPLLYLG  179
            + A VLAV G + ++FLAFI+FTS PF+R +PA P+EG DLNP+LQD GL +HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVCFSFAVAALLEGRLDAAWARWVRPWALMAWMFLTGGIAMGSYWAYYELGWGGWW  239
            YVGFSV F+FA+AALL GRLD+A +R  RPW+L AW+FLT GI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLVGTALLHSAIVMEKRSALKIWTVllailtfslsllgtflVRSGVLT  299
            FWDPVENAS+MPWL GTALLHS  V E+R+++K WT+LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFATDPGRglfilgilalfiggslslfALRVQSLSAGGIFHPISREGALVFNNLFLT  359
            SVH+FA+DP+RG+FIL+++ L  GGSL LFA+R + + +       SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  TAAATVLIGTLYPLLLEVTTGEKISVGAPFFNMTFGPLMVPLLFAVPFGPLLAWKRGDLY  419
            +A   VL+GTL PL+        ISVG PFFN  F  LMVP+ + +  GPL+ W R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  GVGQRLMTAFALSLAVVGIMLWRTSAHSVlaalgiglaawliFGSLTDLVLKAGIGKVS-  478
             + + L +A   +L +  ++ W      +  +      A      ++ L +  ++ +VS 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMA----CWIAVLAVAEAVQRVSR  476

Query  479  ASKAFARFKGLPRSVFGTSLAHIGLGLTLLGIVSVTTFGTENVLVMQPGGTAKVQNYTLR  538
            ++K+   + G+         AH+GL++T+ GI     ++ E  + M++G++  +++Y + 
Sbjct  477  GTKTSLSYWGMVA-------AHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  539  FEGLRPITGSNFTENRGAFTLLDSS--GRDLAVIEPSKRFFPARQMPTTESGIKTLWFSQ  596
            F  +R ITG+N+   RG+ +L++ +  G   AV+++ KR++ + +M  TE++I      +
Sbjct  530  FREVRDITGPNY---RGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  597  VYVALGDEPGNGAVVVRIWWKPLVTLIW  624
            +Y ALG+E +NGA  VR+  KP+V  IW
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIW  614

577) BMEI1332 in NC_003317


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  317 bits (1190),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 283/628 (46%), Positives = 420/628 (67%), Gaps = 18/628 (2%)

Query  1    MSVEIGHFALVLALALSIVQSIVPVVGAHRRDAQLMAVAVPTALAVFALIVLASAALIHA  60
            M  E GH  L LAL+++++ S+ P+ G  R DA++MA A   A  +F  +  A   L+HA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   YVVSDFSVLNVVENSHSQKPLLYKITGVWGNHEGSMLLWVFILTLFSALVAAFSGNLPET  120
            +VV+DF+V  V  NS++Q P+ Y++++ WG HEGS+LLWV++++  +  VA FS ++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRANVLAVQGWIGTAFLAFIIFTSNPFTRIFPA-PMEGGDLNPVLQDIGLAIHPPLLYLG  179
            + A VLAV G + ++FLAFI+FTS PF+R +PA P+EG DLNP+LQD GL +HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVCFSFAVAALLEGRLDAAWARWVRPWALMAWMFLTGGIAMGSYWAYYELGWGGWW  239
            YVGFSV F+FA+AALL GRLD+A +R  RPW+L AW+FLT GI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLVGTALLHSAIVMEKRSALKIWTVllailtfslsllgtflVRSGVLT  299
            FWDPVENAS+MPWL GTALLHS  V E+R+++K WT+LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFATDPGRglfilgilalfiggslslfALRVQSLSAGGIFHPISREGALVFNNLFLT  359
            SVH+FA+DP+RG+FIL+++ L  GGSL LFA+R + + +       SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  TAAATVLIGTLYPLLLEVTTGEKISVGAPFFNMTFGPLMVPLLFAVPFGPLLAWKRGDLY  419
            +A   VL+GTL PL+        ISVG PFFN  F  LMVP+ + +  GPL+ W R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  GVGQRLMTAFALSLAVVGIMLWRTSAHSVlaalgiglaawliFGSLTDLVLKAGIGKVS-  478
             + + L +A   +L +  ++ W      +  +      A      ++ L +  ++ +VS 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMA----CWIAVLAVAEAVQRVSR  476

Query  479  ASKAFARFKGLPRSVFGTSLAHIGLGLTLLGIVSVTTFGTENVLVMQPGGTAKVQNYTLR  538
            ++K+   + G+         AH+GL++T+ GI     ++ E  + M++G++  +++Y + 
Sbjct  477  GTKTSLSYWGMVA-------AHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  539  FEGLRPITGSNFTENRGAFTLLDSS--GRDLAVIEPSKRFFPARQMPTTESGIKTLWFSQ  596
            F  +R ITG+N+   RG+ +L++ +  G   AV+++ KR++ + +M  TE++I      +
Sbjct  530  FREVRDITGPNY---RGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  597  VYVALGDEPGNGAVVVRIWWKPLVTLIW  624
            +Y ALG+E +NGA  VR+  KP+V  IW
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIW  614

578) ccmF in NC_017244


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  317 bits (1190),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 283/628 (46%), Positives = 420/628 (67%), Gaps = 18/628 (2%)

Query  1    MSVEIGHFALVLALALSIVQSIVPVVGAHRRDAQLMAVAVPTALAVFALIVLASAALIHA  60
            M  E GH  L LAL+++++ S+ P+ G  R DA++MA A   A  +F  +  A   L+HA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   YVVSDFSVLNVVENSHSQKPLLYKITGVWGNHEGSMLLWVFILTLFSALVAAFSGNLPET  120
            +VV+DF+V  V  NS++Q P+ Y++++ WG HEGS+LLWV++++  +  VA FS ++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRANVLAVQGWIGTAFLAFIIFTSNPFTRIFPA-PMEGGDLNPVLQDIGLAIHPPLLYLG  179
            + A VLAV G + ++FLAFI+FTS PF+R +PA P+EG DLNP+LQD GL +HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVCFSFAVAALLEGRLDAAWARWVRPWALMAWMFLTGGIAMGSYWAYYELGWGGWW  239
            YVGFSV F+FA+AALL GRLD+A +R  RPW+L AW+FLT GI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLVGTALLHSAIVMEKRSALKIWTVllailtfslsllgtflVRSGVLT  299
            FWDPVENAS+MPWL GTALLHS  V E+R+++K WT+LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFATDPGRglfilgilalfiggslslfALRVQSLSAGGIFHPISREGALVFNNLFLT  359
            SVH+FA+DP+RG+FIL+++ L  GGSL LFA+R + + +       SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  TAAATVLIGTLYPLLLEVTTGEKISVGAPFFNMTFGPLMVPLLFAVPFGPLLAWKRGDLY  419
            +A   VL+GTL PL+        ISVG PFFN  F  LMVP+ + +  GPL+ W R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  GVGQRLMTAFALSLAVVGIMLWRTSAHSVlaalgiglaawliFGSLTDLVLKAGIGKVS-  478
             + + L +A   +L +  ++ W      +  +      A      ++ L +  ++ +VS 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMA----CWIAVLAVAEAVQRVSR  476

Query  479  ASKAFARFKGLPRSVFGTSLAHIGLGLTLLGIVSVTTFGTENVLVMQPGGTAKVQNYTLR  538
            ++K+   + G+         AH+GL++T+ GI     ++ E  + M++G++  +++Y + 
Sbjct  477  GTKTSLSYWGMVA-------AHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  539  FEGLRPITGSNFTENRGAFTLLDSS--GRDLAVIEPSKRFFPARQMPTTESGIKTLWFSQ  596
            F  +R ITG+N+   RG+ +L++ +  G   AV+++ KR++ + +M  TE++I      +
Sbjct  530  FREVRDITGPNY---RGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  597  VYVALGDEPGNGAVVVRIWWKPLVTLIW  624
            +Y ALG+E +NGA  VR+  KP+V  IW
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIW  614

579) BM590_A0627 in NC_017246


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  317 bits (1190),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 283/628 (46%), Positives = 420/628 (67%), Gaps = 18/628 (2%)

Query  1    MSVEIGHFALVLALALSIVQSIVPVVGAHRRDAQLMAVAVPTALAVFALIVLASAALIHA  60
            M  E GH  L LAL+++++ S+ P+ G  R DA++MA A   A  +F  +  A   L+HA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   YVVSDFSVLNVVENSHSQKPLLYKITGVWGNHEGSMLLWVFILTLFSALVAAFSGNLPET  120
            +VV+DF+V  V  NS++Q P+ Y++++ WG HEGS+LLWV++++  +  VA FS ++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRANVLAVQGWIGTAFLAFIIFTSNPFTRIFPA-PMEGGDLNPVLQDIGLAIHPPLLYLG  179
            + A VLAV G + ++FLAFI+FTS PF+R +PA P+EG DLNP+LQD GL +HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVCFSFAVAALLEGRLDAAWARWVRPWALMAWMFLTGGIAMGSYWAYYELGWGGWW  239
            YVGFSV F+FA+AALL GRLD+A +R  RPW+L AW+FLT GI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLVGTALLHSAIVMEKRSALKIWTVllailtfslsllgtflVRSGVLT  299
            FWDPVENAS+MPWL GTALLHS  V E+R+++K WT+LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFATDPGRglfilgilalfiggslslfALRVQSLSAGGIFHPISREGALVFNNLFLT  359
            SVH+FA+DP+RG+FIL+++ L  GGSL LFA+R + + +       SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  TAAATVLIGTLYPLLLEVTTGEKISVGAPFFNMTFGPLMVPLLFAVPFGPLLAWKRGDLY  419
            +A   VL+GTL PL+        ISVG PFFN  F  LMVP+ + +  GPL+ W R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  GVGQRLMTAFALSLAVVGIMLWRTSAHSVlaalgiglaawliFGSLTDLVLKAGIGKVS-  478
             + + L +A   +L +  ++ W      +  +      A      ++ L +  ++ +VS 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMA----CWIAVLAVAEAVQRVSR  476

Query  479  ASKAFARFKGLPRSVFGTSLAHIGLGLTLLGIVSVTTFGTENVLVMQPGGTAKVQNYTLR  538
            ++K+   + G+         AH+GL++T+ GI     ++ E  + M++G++  +++Y + 
Sbjct  477  GTKTSLSYWGMVA-------AHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  539  FEGLRPITGSNFTENRGAFTLLDSS--GRDLAVIEPSKRFFPARQMPTTESGIKTLWFSQ  596
            F  +R ITG+N+   RG+ +L++ +  G   AV+++ KR++ + +M  TE++I      +
Sbjct  530  FREVRDITGPNY---RGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  597  VYVALGDEPGNGAVVVRIWWKPLVTLIW  624
            +Y ALG+E +NGA  VR+  KP+V  IW
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIW  614

580) BMNI_I0613 in NC_017248


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  317 bits (1190),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 283/628 (46%), Positives = 420/628 (67%), Gaps = 18/628 (2%)

Query  1    MSVEIGHFALVLALALSIVQSIVPVVGAHRRDAQLMAVAVPTALAVFALIVLASAALIHA  60
            M  E GH  L LAL+++++ S+ P+ G  R DA++MA A   A  +F  +  A   L+HA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   YVVSDFSVLNVVENSHSQKPLLYKITGVWGNHEGSMLLWVFILTLFSALVAAFSGNLPET  120
            +VV+DF+V  V  NS++Q P+ Y++++ WG HEGS+LLWV++++  +  VA FS ++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRANVLAVQGWIGTAFLAFIIFTSNPFTRIFPA-PMEGGDLNPVLQDIGLAIHPPLLYLG  179
            + A VLAV G + ++FLAFI+FTS PF+R +PA P+EG DLNP+LQD GL +HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVCFSFAVAALLEGRLDAAWARWVRPWALMAWMFLTGGIAMGSYWAYYELGWGGWW  239
            YVGFSV F+FA+AALL GRLD+A +R  RPW+L AW+FLT GI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLVGTALLHSAIVMEKRSALKIWTVllailtfslsllgtflVRSGVLT  299
            FWDPVENAS+MPWL GTALLHS  V E+R+++K WT+LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFATDPGRglfilgilalfiggslslfALRVQSLSAGGIFHPISREGALVFNNLFLT  359
            SVH+FA+DP+RG+FIL+++ L  GGSL LFA+R + + +       SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  TAAATVLIGTLYPLLLEVTTGEKISVGAPFFNMTFGPLMVPLLFAVPFGPLLAWKRGDLY  419
            +A   VL+GTL PL+        ISVG PFFN  F  LMVP+ + +  GPL+ W R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  GVGQRLMTAFALSLAVVGIMLWRTSAHSVlaalgiglaawliFGSLTDLVLKAGIGKVS-  478
             + + L +A   +L +  ++ W      +  +      A      ++ L +  ++ +VS 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMA----CWIAVLAVAEAVQRVSR  476

Query  479  ASKAFARFKGLPRSVFGTSLAHIGLGLTLLGIVSVTTFGTENVLVMQPGGTAKVQNYTLR  538
            ++K+   + G+         AH+GL++T+ GI     ++ E  + M++G++  +++Y + 
Sbjct  477  GTKTSLSYWGMVA-------AHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  539  FEGLRPITGSNFTENRGAFTLLDSS--GRDLAVIEPSKRFFPARQMPTTESGIKTLWFSQ  596
            F  +R ITG+N+   RG+ +L++ +  G   AV+++ KR++ + +M  TE++I      +
Sbjct  530  FREVRDITGPNY---RGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  597  VYVALGDEPGNGAVVVRIWWKPLVTLIW  624
            +Y ALG+E +NGA  VR+  KP+V  IW
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIW  614

581) ccmF in NC_013119


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  317 bits (1190),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 283/628 (46%), Positives = 420/628 (67%), Gaps = 18/628 (2%)

Query  1    MSVEIGHFALVLALALSIVQSIVPVVGAHRRDAQLMAVAVPTALAVFALIVLASAALIHA  60
            M  E GH  L LAL+++++ S+ P+ G  R DA++MA A   A  +F  +  A   L+HA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   YVVSDFSVLNVVENSHSQKPLLYKITGVWGNHEGSMLLWVFILTLFSALVAAFSGNLPET  120
            +VV+DF+V  V  NS++Q P+ Y++++ WG HEGS+LLWV++++  +  VA FS ++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRANVLAVQGWIGTAFLAFIIFTSNPFTRIFPA-PMEGGDLNPVLQDIGLAIHPPLLYLG  179
            + A VLAV G + ++FLAFI+FTS PF+R +PA P+EG DLNP+LQD GL +HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVCFSFAVAALLEGRLDAAWARWVRPWALMAWMFLTGGIAMGSYWAYYELGWGGWW  239
            YVGFSV F+FA+AALL GRLD+A +R  RPW+L AW+FLT GI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLVGTALLHSAIVMEKRSALKIWTVllailtfslsllgtflVRSGVLT  299
            FWDPVENAS+MPWL GTALLHS  V E+R+++K WT+LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFATDPGRglfilgilalfiggslslfALRVQSLSAGGIFHPISREGALVFNNLFLT  359
            SVH+FA+DP+RG+FIL+++ L  GGSL LFA+R + + +       SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  TAAATVLIGTLYPLLLEVTTGEKISVGAPFFNMTFGPLMVPLLFAVPFGPLLAWKRGDLY  419
            +A   VL+GTL PL+        ISVG PFFN  F  LMVP+ + +  GPL+ W R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  GVGQRLMTAFALSLAVVGIMLWRTSAHSVlaalgiglaawliFGSLTDLVLKAGIGKVS-  478
             + + L +A   +L +  ++ W      +  +      A      ++ L +  ++ +VS 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMA----CWIAVLAVAEAVQRVSR  476

Query  479  ASKAFARFKGLPRSVFGTSLAHIGLGLTLLGIVSVTTFGTENVLVMQPGGTAKVQNYTLR  538
            ++K+   + G+         AH+GL++T+ GI     ++ E  + M++G++  +++Y + 
Sbjct  477  GTKTSLSYWGMVA-------AHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  539  FEGLRPITGSNFTENRGAFTLLDSS--GRDLAVIEPSKRFFPARQMPTTESGIKTLWFSQ  596
            F  +R ITG+N+   RG+ +L++ +  G   AV+++ KR++ + +M  TE++I      +
Sbjct  530  FREVRDITGPNY---RGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  597  VYVALGDEPGNGAVVVRIWWKPLVTLIW  624
            +Y ALG+E +NGA  VR+  KP+V  IW
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIW  614

582) ccmF in NC_015857


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  317 bits (1190),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 283/628 (46%), Positives = 420/628 (67%), Gaps = 18/628 (2%)

Query  1    MSVEIGHFALVLALALSIVQSIVPVVGAHRRDAQLMAVAVPTALAVFALIVLASAALIHA  60
            M  E GH  L LAL+++++ S+ P+ G  R DA++MA A   A  +F  +  A   L+HA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   YVVSDFSVLNVVENSHSQKPLLYKITGVWGNHEGSMLLWVFILTLFSALVAAFSGNLPET  120
            +VV+DF+V  V  NS++Q P+ Y++++ WG HEGS+LLWV++++  +  VA FS ++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRANVLAVQGWIGTAFLAFIIFTSNPFTRIFPA-PMEGGDLNPVLQDIGLAIHPPLLYLG  179
            + A VLAV G + ++FLAFI+FTS PF+R +PA P+EG DLNP+LQD GL +HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVCFSFAVAALLEGRLDAAWARWVRPWALMAWMFLTGGIAMGSYWAYYELGWGGWW  239
            YVGFSV F+FA+AALL GRLD+A +R  RPW+L AW+FLT GI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLVGTALLHSAIVMEKRSALKIWTVllailtfslsllgtflVRSGVLT  299
            FWDPVENAS+MPWL GTALLHS  V E+R+++K WT+LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFATDPGRglfilgilalfiggslslfALRVQSLSAGGIFHPISREGALVFNNLFLT  359
            SVH+FA+DP+RG+FIL+++ L  GGSL LFA+R + + +       SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  TAAATVLIGTLYPLLLEVTTGEKISVGAPFFNMTFGPLMVPLLFAVPFGPLLAWKRGDLY  419
            +A   VL+GTL PL+        ISVG PFFN  F  LMVP+ + +  GPL+ W R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  GVGQRLMTAFALSLAVVGIMLWRTSAHSVlaalgiglaawliFGSLTDLVLKAGIGKVS-  478
             + + L +A   +L +  ++ W      +  +      A      ++ L +  ++ +VS 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMA----CWIAVLAVAEAVQRVSR  476

Query  479  ASKAFARFKGLPRSVFGTSLAHIGLGLTLLGIVSVTTFGTENVLVMQPGGTAKVQNYTLR  538
            ++K+   + G+         AH+GL++T+ GI     ++ E  + M++G++  +++Y + 
Sbjct  477  GTKTSLSYWGMVA-------AHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  539  FEGLRPITGSNFTENRGAFTLLDSS--GRDLAVIEPSKRFFPARQMPTTESGIKTLWFSQ  596
            F  +R ITG+N+   RG+ +L++ +  G   AV+++ KR++ + +M  TE++I      +
Sbjct  530  FREVRDITGPNY---RGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  597  VYVALGDEPGNGAVVVRIWWKPLVTLIW  624
            +Y ALG+E +NGA  VR+  KP+V  IW
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIW  614

583) ccmF in NC_006300


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  317 bits (1188),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 240/558 (44%), Positives = 375/558 (68%), Gaps = 7/558 (1%)

Query  57   LAYSFSVNDFSVEYVAAHSNSQLPLFFKIAATWGGHEGSMlfwlfslslwTAAFAFFSRK  116
            L  +F VNDF+V YVA++SN+QLP+ +++AATWG+HEGS+L+W++ +S WT A A FSR+
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQ  116

Query  117  IDPVFSARTLSILGFICLSFAIFILFFSNPFIRQFP-LPPEGRDLNPMLQDIGLIIHPPL  175
            + + + AR L+++G +C +F  FILF S PF R +P +P EGRDLNP+LQD GLI+HPPL
Sbjct  117  VPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPL  176

Query  176  LYLGYVGFAVNFAMTLSVMLSGHVDAAIARWTRIWVLLSWFFLTLGIMLGAWWAYYELGW  235
            LY+GYVGF+V FA +++ +LSG++D+A++R +R W L +W FLTLGI+LG+ WAYYELGW
Sbjct  177  LYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGW  236

Query  236  GGWWFWDPVENASLMPWLIGLALLHSLIVTEQRGIFSYWTIlfslfafafsllGTFIVRS  295
            GGWWFWDPVENAS+MPWL G ALLHS+ VTEQR+ F  WT+L+S+ AF++ LLGTF+VRS
Sbjct  237  GGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRS  296

Query  296  GVLTSVHAFAVDGERGtalllifflltalaltvfalKVNLRQSAVRFSVFSKESFLLLAN  355
            GVL SVHAFA D  RG  +L +  L+T+ +L +FA++ +  +S V  ++ S+ES+LL  N
Sbjct  297  GVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNN  356

Query  356  VVLTIATVSVFLGTFYPMVFSAMGWGSISVGAPYFNSIF----VPLLLIMLIAMVFVLAT  411
            V+L  A + V+LGT+ P+V   +G GSISVG P+FN++F    VP+ L++ ++ +   + 
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  412  KWQKMNRTLLRQKSillipalliayliiHFTVRQDESLRFHFSAFVllslaiwlllatlw  471
             + +  R LL+   +  +   ++   +++  +    ++    +  + +      +    +
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSR  476

Query  472  iNWRKIGLRRSGMILAHCGVAFAVIGAVMSGYFGSEIGVRLAPQQSQMLNGYEFRYIGFT  531
                K +L   GM+ AH G+A ++ G   S  ++ E +VR+ + +S  +++Y F +    
Sbjct  477  GT--KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  532  NELGPNFTSEKAHFEIYKNNQKLTALYPERRYYEVRTMNMSEVGIQWGVLGDIYIVMGDK  591
            +  GPN+ +  A + + ++ +  + L +E+R Y+   M M+E +I+ G+  D+Y  +G+ 
Sbjct  535  DITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  592  LAPNEFSFRLHYKPFVRW  609
            L     + RL YKPFVRW
Sbjct  595  LDNGAWAVRLYYKPFVRW  612

584) sirE in NC_004347


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  317 bits (1188),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 240/589 (41%), Positives = 392/589 (67%), Gaps = 33/589 (5%)

Query  60   LVFSFIADDFSVAYVANHSNSQLALGYKVAAVWGSHEGSMLFWVFAIALWGAVINWRQAT  119
            LV +F+ +DF+VAYVA +SN+QL++ Y+VAA WG+HEGS+L+WV+ ++ W   +      
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAV------  110

Query  120  HSAKLDLENLQADKAYFGRVLAILALVILGFNLFLLFTSNPFARLLPNIPVEGRDLNPIL  179
                  + + Q      +RVLA++++V  GF  F+LFTS PFAR LP +PVEGRDLNP+L
Sbjct  111  -----AVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLL  165

Query  180  QDIGLILHPPMLFLGYVGLTVCFAAALASLIGGKLPARHLDYLRPWVLLAWIFLTGGNAF  239
            QD GLI+HPP+L++GYVG++V FA A+A+L++G+L +    + RPW L AW+FLT G  +
Sbjct  166  QDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVL  225

Query  240  GSWWAYNELGWGGWWFWDPVENASFIPWLVATALVHSLVLTRKTQGftlttlflcllafs  299
            GS WAY ELGWGGWWFWDPVENASF+PWL +TAL+HS+ +T +  GF   TL+L + AFS
Sbjct  226  GSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFS  285

Query  300  lsllgsflVRSGIVQSVHAFAADPTRGMSILSLLVIFVGAALLIFALKANLLRREIDFGL  359
            L LLG+FLVRSG++ SVHAFA+DP+RGM IL+++V+  G++LL+FA++++ +R  ++ +L
Sbjct  286  LCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNAL  345

Query  360  YSKETllllgivilvvAAFSVLLGTFYPLIYELLNLGTLSVGAPYFNAIFVPLTFLVVLL  419
             S+E+LLL   V+L+ A + VLLGT+ PL+   L LG++SVG P+FN++F  L     LL
Sbjct  346  WSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALL  405

Query  420  MGIAPLVEWQNTSKAQAMPILLFGFGVLAIAFWVSLQAASGSNLFLLLGTaaalwlivcl  479
            +G++PLV W    +++ +  LL          W ++ ++      L+L+   +  L   +
Sbjct  406  LGVGPLVRW-GRDRPRNIRKLL----------WAAVVTT------LVLSVLLPWLLEDKI  448

Query  480  lltllvslsvRKRASTNQITANAPVKSRTSKQ--RFIGMMLAHLGVAITIIGASAVSNFE  537
            +    V++++  + +   ++      SR +K    + GM+ AHLG+A+TI G +   N+ 
Sbjct  449  IAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYS  508

Query  538  EEALLRMGPGQGKPLAGYILVYESTENVETNSFTAIQANISIRDGANDEEILGYVRPQRQ  597
             E  +RM +G++  + +Y + +    ++   ++ +  A I++   ++ E +L   +++++
Sbjct  509  VERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVL---HAEKR  565

Query  598  TFKSNAMEMSHAGIDHGFWRDIYVSMGVQLSDSEYLIRISYKPLATWIW  646
             ++++ M M++A+ID G+ RD+Y ++G +L ++   +R+ YKP+  WIW
Sbjct  566  LYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

585) ccmF in NC_010169


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  316 bits (1186),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 282/628 (45%), Positives = 420/628 (67%), Gaps = 18/628 (2%)

Query  1    MSVEIGHFALVLALALSIVQSIVPVVGAHRRDAQLMAVAVPTALAVFALIVLASAALIHA  60
            M  E GH  L LAL+++++ S+ P+ G  R DA++MA A   A  +F  +  A   L+HA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   YVVSDFSVLNVVENSHSQKPLLYKITGVWGNHEGSMLLWVFILTLFSALVAAFSGNLPET  120
            +VV+DF+V  V  NS++Q P+ Y++++ WG HEGS+LLWV++++  +  VA FS ++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRANVLAVQGWIGTAFLAFIIFTSNPFTRIFPA-PMEGGDINPVLQDIGLAIHPPLLYLG  179
            + A VLAV G + ++FLAFI+FTS PF+R +PA P+EG D+NP+LQD GL +HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVCFSFAVAALLEGRLDAAWARWVRPWALMAWMFLTGGIAMGSYWAYYELGWGGWW  239
            YVGFSV F+FA+AALL GRLD+A +R  RPW+L AW+FLT GI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLVGTALLHSAIVMEKRSALKIWTVllailtfslsllgtflVRSGVLT  299
            FWDPVENAS+MPWL GTALLHS  V E+R+++K WT+LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFATDPGRglfilgilalfiggslslfALRVQSLSAGGIFHPISREGALVFNNLFLT  359
            SVH+FA+DP+RG+FIL+++ L  GGSL LFA+R + + +       SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  TAAATVLIGTLYPLLLEVTTGEKISVGAPFFNMTFGPLMVPLLFAVPFGPLLAWKRGDLY  419
            +A   VL+GTL PL+        ISVG PFFN  F  LMVP+ + +  GPL+ W R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  GVGQRLMTAFALSLAVVGIMLWRTSAHSVlaalgiglaawliFGSLTDLVLKAGIGKVS-  478
             + + L +A   +L +  ++ W      +  +      A      ++ L +  ++ +VS 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMA----CWIAVLAVAEAVQRVSR  476

Query  479  ASKAFARFKGLPRSVFGTSLAHIGLGLTLLGIVSVTTFGTENVLVMQPGGTAKVQNYTLR  538
            ++K+   + G+         AH+GL++T+ GI     ++ E  + M++G++  +++Y + 
Sbjct  477  GTKTSLSYWGMVA-------AHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  539  FEGLRPITGSNFTENRGAFTLLDSS--GRDLAVIEPSKRFFPACQMPTTESGIKTLWFSQ  596
            F  +R ITG+N+   RG+ +L++ +  G   AV+++ KR++ + +M  TE++I      +
Sbjct  530  FREVRDITGPNY---RGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  597  VYVALGDEPGNGAVVVRIWWKPLVTLIW  624
            +Y ALG+E +NGA  VR+  KP+V  IW
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIW  614

586) Dshi_3775 in NC_009955


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  316 bits (1185),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 289/634 (46%), Positives = 426/634 (68%), Gaps = 26/634 (4%)

Query  1    MVPEIGHFalalalalalVQSVLPIAGASRRNAVWMKSAQATAIGQVLFVAIA--FAALM  58
            M+PE GH  L LAL++AL+ SV P+ G +R +A     A A  ++ +LF+ +A  F  L+
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDA--RMMASAGVFAWLLFICVAGAFFVLV  58

Query  59   QAFIVSDFTVRNVVENSHSLKPMLYKVAGTWGSHEGSLLLWILILAVFGAGVAWFGSNIP  118
            +AF+V+DFTV  V  NS++  P+ Y+VA+TWG+HEGSLLLW+L+++    +VA F+ ++P
Sbjct  59   HAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVP  118

Query  119  AETKARTLSVQAWISVGFLSFLLLTSNPFERVFpp-pldgndlnpllQDMGLAMHPPLLY  177
            A+  AR L+V + +  GFL+F+L+TS PF R +P+ P++G DLNPLLQD GL  HPPLLY
Sbjct  119  ADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLY  178

Query  178  FGYVGFSIVFSFAVAALLEGRVDPAWARWVRPWTLAAWVSLTAGIALGSWWAYYELGWGG  237
             GYVGFS+ F+FA+AALL GR+D+A +R  RPWTLAAWV LT GI LGS WAYYELGWGG
Sbjct  179  MGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGG  238

Query  238  WWFWDPVENVSFMPWLLGTALLHSAIVTEKRDAFKSWtillailtfslsllGTFIVRSGL  297
            WWFWDPVEN SFMPWL GTALLHS  VTE+R +FK+WT+LL+I +FSL LLGTF+VRSG+
Sbjct  239  WWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGV  298

Query  298  LTSVHAFAVDPERGLYILGLLAVSIGGSLALYAWRAPEMEPGGLFRPISREAGLLVNNLI  357
            L SVHAFA DP RG++IL+++ +  GGSL L+A R+  + +       SRE+ LL NN++
Sbjct  299  LVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVL  358

Query  358  LAAATGTVLFGTLYPLILEAVTGDKISVGPPFFNAAFIPMMLALVVFMGLGPFLSWKRAD  417
            L AA   VL+GTL PL+   +  + ISVG PFFN+ F  +M+++ +++G+GP++ W R D
Sbjct  359  LMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR-D  417

Query  418  IAGLLDRIQFvavlaviaalaawyllNGGPIMAYLAILGAAWLLFATLREWALRIRLFEV  477
             +  + ++   AV++ +        L  + I+A ++ +G            A+  ++  +
Sbjct  418  RPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIA-MTAVGM-----------AMACWIAVL  465

Query  478  SLAESARRVRNLPRASH---GMTLAHAGVAVLMMGMIGSTGWKSEEIVFAAPGTEVTIAG  534
            ++AE+ +RV    ++S    GM  AH G+AV + G+  S     E  V   +G  VTI +
Sbjct  466  AVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHD  525

Query  535  FDITFEGAAKVQGPNYIADRGTLVVRRDGELVTTLFPERRYYPVAESQTTESAIRSTLAG  594
            + +TF     + GPNY ++ + + V R+GE  + L +E+R Y  +    TE+AI + L+ 
Sbjct  526  YRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTR  585

Query  595  DLYTSIATPASDQVNNAGAWTLRILYEPLVNLIW  628
            DLY++++    ++++N GAW++R+ Y P+V  IW
Sbjct  586  DLYAALG----EELDN-GAWAVRLYYKPFVRWIW  614

587) Dshi_4051 in NC_009957


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  316 bits (1185),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 289/634 (46%), Positives = 426/634 (68%), Gaps = 26/634 (4%)

Query  1    MVPEIGHFalalalalalVQSVLPIAGASRRNAVWMKSAQATAIGQVLFVAIA--FAALM  58
            M+PE GH  L LAL++AL+ SV P+ G +R +A     A A  ++ +LF+ +A  F  L+
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDA--RMMASAGVFAWLLFICVAGAFFVLV  58

Query  59   QAFIVSDFTVRNVVENSHSLKPMLYKVAGTWGSHEGSLLLWILILAVFGAGVAWFGSNIP  118
            +AF+V+DFTV  V  NS++  P+ Y+VA+TWG+HEGSLLLW+L+++    +VA F+ ++P
Sbjct  59   HAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVP  118

Query  119  AETKARTLSVQAWISVGFLSFLLLTSNPFERVFpp-pldgndlnpllQDMGLAMHPPLLY  177
            A+  AR L+V + +  GFL+F+L+TS PF R +P+ P++G DLNPLLQD GL  HPPLLY
Sbjct  119  ADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLY  178

Query  178  FGYVGFSIVFSFAVAALLEGRVDPAWARWVRPWTLAAWVSLTAGIALGSWWAYYELGWGG  237
             GYVGFS+ F+FA+AALL GR+D+A +R  RPWTLAAWV LT GI LGS WAYYELGWGG
Sbjct  179  MGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGG  238

Query  238  WWFWDPVENVSFMPWLLGTALLHSAIVTEKRDAFKSWtillailtfslsllGTFIVRSGL  297
            WWFWDPVEN SFMPWL GTALLHS  VTE+R +FK+WT+LL+I +FSL LLGTF+VRSG+
Sbjct  239  WWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGV  298

Query  298  LTSVHAFAVDPERGLYILGLLAVSIGGSLALYAWRAPEMEPGGLFRPISREAGLLVNNLI  357
            L SVHAFA DP RG++IL+++ +  GGSL L+A R+  + +       SRE+ LL NN++
Sbjct  299  LVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVL  358

Query  358  LAAATGTVLFGTLYPLILEAVTGDKISVGPPFFNAAFIPMMLALVVFMGLGPFLSWKRAD  417
            L AA   VL+GTL PL+   +  + ISVG PFFN+ F  +M+++ +++G+GP++ W R D
Sbjct  359  LMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR-D  417

Query  418  IAGLLDRIQFvavlaviaalaawyllNGGPIMAYLAILGAAWLLFATLREWALRIRLFEV  477
             +  + ++   AV++ +        L  + I+A ++ +G            A+  ++  +
Sbjct  418  RPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIA-MTAVGM-----------AMACWIAVL  465

Query  478  SLAESARRVRNLPRASH---GMTLAHAGVAVLMMGMIGSTGWKSEEIVFAAPGTEVTIAG  534
            ++AE+ +RV    ++S    GM  AH G+AV + G+  S     E  V   +G  VTI +
Sbjct  466  AVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHD  525

Query  535  FDITFEGAAKVQGPNYIADRGTLVVRRDGELVTTLFPERRYYPVAESQTTESAIRSTLAG  594
            + +TF     + GPNY ++ + + V R+GE  + L +E+R Y  +    TE+AI + L+ 
Sbjct  526  YRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTR  585

Query  595  DLYTSIATPASDQVNNAGAWTLRILYEPLVNLIW  628
            DLY++++    ++++N GAW++R+ Y P+V  IW
Sbjct  586  DLYAALG----EELDN-GAWAVRLYYKPFVRWIW  614

588) ccmF in NC_010103


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  316 bits (1184),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 282/628 (45%), Positives = 420/628 (67%), Gaps = 18/628 (2%)

Query  1    MSVEIGHFALVLALALSIVQSIVPVVGAHRRDAQLMAVAVPTALAVFALIVLASAALIHA  60
            M  E GH  L LAL+++++ S+ P+ G  R DA++MA A   A  +F  +  A   L+HA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   YVVSDFSVLNVVENSHSQKPLLYKITGVWGNHEGSMLLWVFILTLFSALVAAFSGNLPET  120
            +VV+DF+V  V  NS++Q P+ Y++++ WG HEGS+LLWV++++  +  VA FS ++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRADVLAVQGWIGTAFLAFIIFTSNPFTRIFPA-PMEGGDINPVLQDIGLAIHPPLLYLG  179
            + A VLAV G + ++FLAFI+FTS PF+R +PA P+EG D+NP+LQD GL +HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVCFSFAVAALLEGRLDAAWARWVRPWALMAWMFLTGGIAMGSYWAYYELGWGGWW  239
            YVGFSV F+FA+AALL GRLD+A +R  RPW+L AW+FLT GI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLVGTALLHSAIVMEKRSALKIWTVllailtfslsllgtflVRSGVLT  299
            FWDPVENAS+MPWL GTALLHS  V E+R+++K WT+LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFATDPGRglfilgilalfiggslslfALRVQSLSAGGIFHPISREGALVFNNLFLT  359
            SVH+FA+DP+RG+FIL+++ L  GGSL LFA+R + + +       SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  TAAATVLIGTLYPLLLEVTTGEKISVGAPFFNMTFGPLMVPLLFAVPFGPLLAWKRGDLY  419
            +A   VL+GTL PL+        ISVG PFFN  F  LMVP+ + +  GPL+ W R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  GVGQRLMTAFALSLAVVGIMLWRTSAHSVlaalgiglaawliFGSLTDLVLKAGIGKVS-  478
             + + L +A   +L +  ++ W      +  +      A      ++ L +  ++ +VS 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMA----CWIAVLAVAEAVQRVSR  476

Query  479  ASKAFARFKGLPRSVFGTSLAHIGLGLTLLGIVSVTTFGTENVLVMQPGGTAKVQNYTLR  538
            ++K+   + G+         AH+GL++T+ GI     ++ E  + M++G++  +++Y + 
Sbjct  477  GTKTSLSYWGMVA-------AHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  539  FEGLRPITGSNFTENRGAFTLLDSS--GRDLAVIEPSKRFFPACQMPTTESGIKTLWFSQ  596
            F  +R ITG+N+   RG+ +L++ +  G   AV+++ KR++ + +M  TE++I      +
Sbjct  530  FREVRDITGPNY---RGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  597  VYVALGDEPGNGAVVVRIWWKPLVTLIW  624
            +Y ALG+E +NGA  VR+  KP+V  IW
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIW  614

589) BCA52141_I0732 in NC_016778


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  316 bits (1184),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 282/628 (45%), Positives = 420/628 (67%), Gaps = 18/628 (2%)

Query  1    MSVEIGHFALVLALALSIVQSIVPVVGAHRRDAQLMAVAVPTALAVFALIVLASAALIHA  60
            M  E GH  L LAL+++++ S+ P+ G  R DA++MA A   A  +F  +  A   L+HA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   YVVSDFSVLNVVENSHSQKPLLYKITGVWGNHEGSMLLWVFILTLFSALVAAFSGNLPET  120
            +VV+DF+V  V  NS++Q P+ Y++++ WG HEGS+LLWV++++  +  VA FS ++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRADVLAVQGWIGTAFLAFIIFTSNPFTRIFPA-PMEGGDINPVLQDIGLAIHPPLLYLG  179
            + A VLAV G + ++FLAFI+FTS PF+R +PA P+EG D+NP+LQD GL +HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVCFSFAVAALLEGRLDAAWARWVRPWALMAWMFLTGGIAMGSYWAYYELGWGGWW  239
            YVGFSV F+FA+AALL GRLD+A +R  RPW+L AW+FLT GI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLVGTALLHSAIVMEKRSALKIWTVllailtfslsllgtflVRSGVLT  299
            FWDPVENAS+MPWL GTALLHS  V E+R+++K WT+LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFATDPGRglfilgilalfiggslslfALRVQSLSAGGIFHPISREGALVFNNLFLT  359
            SVH+FA+DP+RG+FIL+++ L  GGSL LFA+R + + +       SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  TAAATVLIGTLYPLLLEVTTGEKISVGAPFFNMTFGPLMVPLLFAVPFGPLLAWKRGDLY  419
            +A   VL+GTL PL+        ISVG PFFN  F  LMVP+ + +  GPL+ W R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  GVGQRLMTAFALSLAVVGIMLWRTSAHSVlaalgiglaawliFGSLTDLVLKAGIGKVS-  478
             + + L +A   +L +  ++ W      +  +      A      ++ L +  ++ +VS 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMA----CWIAVLAVAEAVQRVSR  476

Query  479  ASKAFARFKGLPRSVFGTSLAHIGLGLTLLGIVSVTTFGTENVLVMQPGGTAKVQNYTLR  538
            ++K+   + G+         AH+GL++T+ GI     ++ E  + M++G++  +++Y + 
Sbjct  477  GTKTSLSYWGMVA-------AHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  539  FEGLRPITGSNFTENRGAFTLLDSS--GRDLAVIEPSKRFFPACQMPTTESGIKTLWFSQ  596
            F  +R ITG+N+   RG+ +L++ +  G   AV+++ KR++ + +M  TE++I      +
Sbjct  530  FREVRDITGPNY---RGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  597  VYVALGDEPGNGAVVVRIWWKPLVTLIW  624
            +Y ALG+E +NGA  VR+  KP+V  IW
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIW  614

590) ccmF in NC_009505


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  316 bits (1185),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 282/628 (45%), Positives = 419/628 (67%), Gaps = 18/628 (2%)

Query  1    MSVEIGHFALVLALALSIVQSIVPVVGAHRRDAQLMAVAVPTALAVFALIVLASAALIHA  60
            M  E GH  L LAL+++++ S+ P+ G  R DA++MA A   A  +F  +  A   L+HA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   YVVSDFSVLNVVENSHSQKPLLYKITGVWGNHEGSMLLWVFILTLFSALVAAFSGNLPET  120
            +VV+DF+V  V  NS++Q P+ Y++++ WG HEGS+LLWV++++  +  VA FS ++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRANVLAVQGWIGTAFLAFIIFTSNPFTRIFPA-PMEGGDLNPVLQDIGLAIHPPLLYLG  179
            + A VLAV G + ++FLAFI+FTS PF+R +PA P+EG DLNP+LQD GL +HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVCFSFAVAALLEGRLDAAWARWVRPWALMAWMFLTGGIAMGSYWAYYELGWGGWW  239
            YVGFSV F+FA+AALL GRLD+A +R  RPW+L AW+FLT GI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLVGTALLHSAIVMEKRSALKIWTVllailtfslsllgtflVRSGVLT  299
            FWDPVENAS+MPWL GTALLHS  V E+R+++K WT+LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFATDPGRglfilgilalfiggslslfALRVQSLSAGGIFHPISREGALVFNNLFLT  359
            SVH+FA+DP+RG+FIL+++ L  GGSL LFA+R + + +       SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  TAAATVLIETLYPLLLEVTTGEKISVGAPFFNMTFGPLMVPLLFAVPFGPLLAWKRGDLY  419
            +A   VL+ TL PL+        ISVG PFFN  F  LMVP+ + +  GPL+ W R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  GVGQRLMTAFALSLAVVGIMLWRTSAHSVlaalgiglaawliFGSLTDLVLKAGIGKVS-  478
             + + L +A   +L +  ++ W      +  +      A      ++ L +  ++ +VS 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMA----CWIAVLAVAEAVQRVSR  476

Query  479  ASKAFARFKGLPRSVFGTSLAHIGLGLTLLGIVSVTTFGTENVLVMQPGGTAKVQNYTLR  538
            ++K+   + G+         AH+GL++T+ GI     ++ E  + M++G++  +++Y + 
Sbjct  477  GTKTSLSYWGMVA-------AHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  539  FEGLRPITGSNFTENRGAFTLLDSS--GRDLAVIEPSKRFFPARQMPTTESGIKTLWFSQ  596
            F  +R ITG+N+   RG+ +L++ +  G   AV+++ KR++ + +M  TE++I      +
Sbjct  530  FREVRDITGPNY---RGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  597  VYVALGDEPGNGAVVVRIWWKPLVTLIW  624
            +Y ALG+E +NGA  VR+  KP+V  IW
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIW  614

591) ccmF in NC_017251


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  316 bits (1184),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 282/628 (45%), Positives = 420/628 (67%), Gaps = 18/628 (2%)

Query  1    MSVEIGHFALVLALALSIVQSIVPVVGAHRRDAQLMAVAVPTALAVFALIVLASAALIHA  60
            M  E GH  L LAL+++++ S+ P+ G  R DA++MA A   A  +F  +  A   L+HA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   YVVSDFSVLNVVENSHSQKPLLYKITGVWGNHEGSMLLWVFILTLFSALVAAFSGNLPET  120
            +VV+DF+V  V  NS++Q P+ Y++++ WG HEGS+LLWV++++  +  VA FS ++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRADVLAVQGWIGTAFLAFIIFTSNPFTRIFPA-PMEGGDINPVLQDIGLAIHPPLLYLG  179
            + A VLAV G + ++FLAFI+FTS PF+R +PA P+EG D+NP+LQD GL +HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVCFSFAVAALLEGRLDAAWARWVRPWALMAWMFLTGGIAMGSYWAYYELGWGGWW  239
            YVGFSV F+FA+AALL GRLD+A +R  RPW+L AW+FLT GI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLVGTALLHSAIVMEKRSALKIWTVllailtfslsllgtflVRSGVLT  299
            FWDPVENAS+MPWL GTALLHS  V E+R+++K WT+LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFATDPGRglfilgilalfiggslslfALRVQSLSAGGIFHPISREGALVFNNLFLT  359
            SVH+FA+DP+RG+FIL+++ L  GGSL LFA+R + + +       SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  TAAATVLIGTLYPLLLEVTTGEKISVGAPFFNMTFGPLMVPLLFAVPFGPLLAWKRGDLY  419
            +A   VL+GTL PL+        ISVG PFFN  F  LMVP+ + +  GPL+ W R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  GVGQRLMTAFALSLAVVGIMLWRTSAHSVlaalgiglaawliFGSLTDLVLKAGIGKVS-  478
             + + L +A   +L +  ++ W      +  +      A      ++ L +  ++ +VS 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMA----CWIAVLAVAEAVQRVSR  476

Query  479  ASKAFARFKGLPRSVFGTSLAHIGLGLTLLGIVSVTTFGTENVLVMQPGGTAKVQNYTLR  538
            ++K+   + G+         AH+GL++T+ GI     ++ E  + M++G++  +++Y + 
Sbjct  477  GTKTSLSYWGMVA-------AHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  539  FEGLRPITGSNFTENRGAFTLLDSS--GRDLAVIEPSKRFFPACQMPTTESGIKTLWFSQ  596
            F  +R ITG+N+   RG+ +L++ +  G   AV+++ KR++ + +M  TE++I      +
Sbjct  530  FREVRDITGPNY---RGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  597  VYVALGDEPGNGAVVVRIWWKPLVTLIW  624
            +Y ALG+E +NGA  VR+  KP+V  IW
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIW  614

592) ccmF in NC_004310


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  316 bits (1184),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 282/628 (45%), Positives = 420/628 (67%), Gaps = 18/628 (2%)

Query  1    MSVEIGHFALVLALALSIVQSIVPVVGAHRRDAQLMAVAVPTALAVFALIVLASAALIHA  60
            M  E GH  L LAL+++++ S+ P+ G  R DA++MA A   A  +F  +  A   L+HA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   YVVSDFSVLNVVENSHSQKPLLYKITGVWGNHEGSMLLWVFILTLFSALVAAFSGNLPET  120
            +VV+DF+V  V  NS++Q P+ Y++++ WG HEGS+LLWV++++  +  VA FS ++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRADVLAVQGWIGTAFLAFIIFTSNPFTRIFPA-PMEGGDINPVLQDIGLAIHPPLLYLG  179
            + A VLAV G + ++FLAFI+FTS PF+R +PA P+EG D+NP+LQD GL +HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVCFSFAVAALLEGRLDAAWARWVRPWALMAWMFLTGGIAMGSYWAYYELGWGGWW  239
            YVGFSV F+FA+AALL GRLD+A +R  RPW+L AW+FLT GI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLVGTALLHSAIVMEKRSALKIWTVllailtfslsllgtflVRSGVLT  299
            FWDPVENAS+MPWL GTALLHS  V E+R+++K WT+LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFATDPGRglfilgilalfiggslslfALRVQSLSAGGIFHPISREGALVFNNLFLT  359
            SVH+FA+DP+RG+FIL+++ L  GGSL LFA+R + + +       SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  TAAATVLIGTLYPLLLEVTTGEKISVGAPFFNMTFGPLMVPLLFAVPFGPLLAWKRGDLY  419
            +A   VL+GTL PL+        ISVG PFFN  F  LMVP+ + +  GPL+ W R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  GVGQRLMTAFALSLAVVGIMLWRTSAHSVlaalgiglaawliFGSLTDLVLKAGIGKVS-  478
             + + L +A   +L +  ++ W      +  +      A      ++ L +  ++ +VS 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMA----CWIAVLAVAEAVQRVSR  476

Query  479  ASKAFARFKGLPRSVFGTSLAHIGLGLTLLGIVSVTTFGTENVLVMQPGGTAKVQNYTLR  538
            ++K+   + G+         AH+GL++T+ GI     ++ E  + M++G++  +++Y + 
Sbjct  477  GTKTSLSYWGMVA-------AHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  539  FEGLRPITGSNFTENRGAFTLLDSS--GRDLAVIEPSKRFFPACQMPTTESGIKTLWFSQ  596
            F  +R ITG+N+   RG+ +L++ +  G   AV+++ KR++ + +M  TE++I      +
Sbjct  530  FREVRDITGPNY---RGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  597  VYVALGDEPGNGAVVVRIWWKPLVTLIW  624
            +Y ALG+E +NGA  VR+  KP+V  IW
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIW  614

593) ccmF in NC_016797


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  316 bits (1184),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 282/628 (45%), Positives = 420/628 (67%), Gaps = 18/628 (2%)

Query  1    MSVEIGHFALVLALALSIVQSIVPVVGAHRRDAQLMAVAVPTALAVFALIVLASAALIHA  60
            M  E GH  L LAL+++++ S+ P+ G  R DA++MA A   A  +F  +  A   L+HA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   YVVSDFSVLNVVENSHSQKPLLYKITGVWGNHEGSMLLWVFILTLFSALVAAFSGNLPET  120
            +VV+DF+V  V  NS++Q P+ Y++++ WG HEGS+LLWV++++  +  VA FS ++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRADVLAVQGWIGTAFLAFIIFTSNPFTRIFPA-PMEGGDINPVLQDIGLAIHPPLLYLG  179
            + A VLAV G + ++FLAFI+FTS PF+R +PA P+EG D+NP+LQD GL +HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVCFSFAVAALLEGRLDAAWARWVRPWALMAWMFLTGGIAMGSYWAYYELGWGGWW  239
            YVGFSV F+FA+AALL GRLD+A +R  RPW+L AW+FLT GI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLVGTALLHSAIVMEKRSALKIWTVllailtfslsllgtflVRSGVLT  299
            FWDPVENAS+MPWL GTALLHS  V E+R+++K WT+LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFATDPGRglfilgilalfiggslslfALRVQSLSAGGIFHPISREGALVFNNLFLT  359
            SVH+FA+DP+RG+FIL+++ L  GGSL LFA+R + + +       SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  TAAATVLIGTLYPLLLEVTTGEKISVGAPFFNMTFGPLMVPLLFAVPFGPLLAWKRGDLY  419
            +A   VL+GTL PL+        ISVG PFFN  F  LMVP+ + +  GPL+ W R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  GVGQRLMTAFALSLAVVGIMLWRTSAHSVlaalgiglaawliFGSLTDLVLKAGIGKVS-  478
             + + L +A   +L +  ++ W      +  +      A      ++ L +  ++ +VS 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMA----CWIAVLAVAEAVQRVSR  476

Query  479  ASKAFARFKGLPRSVFGTSLAHIGLGLTLLGIVSVTTFGTENVLVMQPGGTAKVQNYTLR  538
            ++K+   + G+         AH+GL++T+ GI     ++ E  + M++G++  +++Y + 
Sbjct  477  GTKTSLSYWGMVA-------AHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  539  FEGLRPITGSNFTENRGAFTLLDSS--GRDLAVIEPSKRFFPACQMPTTESGIKTLWFSQ  596
            F  +R ITG+N+   RG+ +L++ +  G   AV+++ KR++ + +M  TE++I      +
Sbjct  530  FREVRDITGPNY---RGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  597  VYVALGDEPGNGAVVVRIWWKPLVTLIW  624
            +Y ALG+E +NGA  VR+  KP+V  IW
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIW  614

594) RPB_3448 in NC_007778


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  316 bits (1183),  Expect = 4e-87, Method: Compositional matrix adjust.
 Identities = 285/626 (46%), Positives = 414/626 (67%), Gaps = 15/626 (2%)

Query  1    MIAEAGHYalvlalalalIQSTVPILGARLGDGGLMNVARSAALAQFVFVAVSFGALVWL  60
            M++E GH  L LAL++AL+ S  P+ G   GD+ +M  A   A   F+ VA +F  LV  
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   NVTSDFSVVNVYENSHSAKPLLYKITGVWGNHEGSMLLWVAILALFGGMVAAFGNNLPLS  120
             V +DF+V  V  NS++  P+ Y++++ WG HEGS+LLWV +++     VA F+ ++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRAHVLAVQAWVASAFYLFILITSNPFLR-IPNPPLEGRDLNPVLQDIGLAVHPPLLYLG  179
            + A+VLAV + V ++F  FIL+TS PF R +P  P+EGRDLNP+LQD GL  HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGfsisfsfaaaaLIEGRLDAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGGWW  239
            YVGFS++F+FA AAL+ GRLD+A +R  RPWTL AW+FLTLGI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLAGTALLHSALVMEKRNALKVWtillsiltfslsllgtflVRSGVLT  299
            FWDPVENAS+MPWLAGTALLHS  V E+R ++K WT+LLSI +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHTFATDPSRGVFILMILCIFIGGSLALFAWRASALKQGGLFAPISREGALVLNNLFLT  359
            SVH+FA+DP+RG+FIL ++ +  GGSL LFA R+  ++     A  SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  TACATVFVGTLYPLALEVLTGDKISVGAPFFNLTFGPLMVPLMLAMPFGPLLAWKRGDLL  419
            +A   V++GTL PL    L  + ISVG PFFN  F  LMVP+ L +  GPL+ W R D  
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR-DRP  419

Query  420  GAAQRliaagvvallavalvwaWTFGGPV--LAPLAIGLAVFVIAGALADIVERIGLLRN  477
               ++L+ A+VV+ L ++++ +W + + +  ++++++++A  +   A+A+ V+R++    
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS----  475

Query  478  PLSIAARRARGLPRSAWGTLFAHAGIGVALIGIVCETTWNSEHIAAMKEGESAKLAGYEL  537
                   R+   + S WG + AH G++V++ GI      + E+   M+ G+S  + +Y +
Sbjct  476  -------RGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRF  528

Query  538  KFDGAIQRQGPNYRELQTHFSVSENGRPIGAMTPSKRSFTTRNTSTTEAALLTRGVSQLY  597
             F    +  GPNYR   + ++V+ +G P + + + KR + T     TEAA+      +LY
Sbjct  529  TFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLY  588

Query  598  ISLGDIDAAGAVTVRIYHKPLVLLIW  623
             +LG+    GA +VR+Y KP+V  IW
Sbjct  589  AALGEELDNGAWAVRLYYKPFVRWIW  614

595) Rvan_3218 in NC_014664


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  316 bits (1183),  Expect = 4e-87, Method: Compositional matrix adjust.
 Identities = 247/568 (44%), Positives = 380/568 (67%), Gaps = 21/568 (3%)

Query  62   ITSDFSVANVWENSHSAKPLLYKISGVWGNHEGSMLLWVLILALFGAAVWLFGQNLPLDL  121
            + +DF+VA V  NS++  P+ Y++++ WG HEGS+LLWVL+++    AV +F++++P D+
Sbjct  62   VVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADI  121

Query  122  RSAVLSIQGLILFTFTLFIIATSSPFVR-IPNALFEGQGLNPILQDPALAIHPPLLYAGY  180
             + VL++ G++   F  FI+ TS+PF R +P    EG++LNP+LQDP+L +HPPLLY GY
Sbjct  122  VARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGY  181

Query  181  VGFSMAFSFAVAALLLGRVDSAWARWVRPWTLAAWIFLTIGIAIGSWWAYYTLGWGGWWF  240
            VGFS+AF+FA+AALL GR+DSA +R  RPWTLAAW+FLT+GI +GS WAYY LGWGGWWF
Sbjct  182  VGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWF  241

Query  241  WDPVENASLMPWLTGTALLHSAIVMEKRDSLKAWTILLAIltfsfsllgtflVRSGVLTS  300
            WDPVENAS+MPWL+GTALLHS  V E+R ++KAWT+LL+I +FS+ LLGTFLVRSGVL S
Sbjct  242  WDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVS  301

Query  301  VHSFASDPSRGVFILAIVSLFTAGGLLLFSWRSNALAASTAFSVVSRESSLVLNNLFLAV  360
            VH+FASDP+RG+FILA++ L T+G+LLLF+ R++ + +    ++ SRES L+ NN++L  
Sbjct  302  VHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMA  361

Query  361  SCGVVFVGTLYPLALEAATGDKISVGAPFFNSTVVWIFlplllllpFGIFIAWKRGDLGE  420
            +  VV++GTL PL       + ISVG PFFN+   W+ +P+ LLL  G ++ W R+   +
Sbjct  362  AMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRN  421

Query  421  aar---rlipaavaailvgiaaivagagFKTGLALTLGAWVFAGAVWEVLWRARFAQVSF  477
              +     + +++   ++    +       T+++++++ W+              A ++ 
Sbjct  422  IRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI--------------AVLAV  467

Query  478  GETARRILNMRRGQ---WGATLGHIGLAVSVIGIAGTTAWNAEHLAVMKPGDSLDVGSYS  534
            +E+ +R+    +     WG   +H+GLAV++ GIA +   + E+   M++GDS+ +  Y 
Sbjct  468  AEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  535  ITFKKVYDEPGPNYTAQAGDFELKSGDSVIGTITSAKKKYDAPPQSTTAAGIAVRPFADV  594
            +TF+ V D  GPNY +  + + +   +   + + + K+ Y+++    T A+I      D+
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  595  YVVLGNEAPGGAFSIRAYYHPFVRWIWG  622
            Y  LG+E   GA ++R YY PFVRWIW+
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIWA  615

596) Bind_2232 in NC_010581


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  315 bits (1182),  Expect = 5e-87, Method: Compositional matrix adjust.
 Identities = 262/604 (44%), Positives = 389/604 (65%), Gaps = 23/604 (3%)

Query  26   WGTFTRDVRLMAVTPSVA--LMQCAFVVLAYGALTYAHIVSDFSLVNVVENSHSAKPLIY  83
            WG    D R+MA +   A  L  C  V  A+  L  A +V+DF++  V  NS++  P+ Y
Sbjct  26   WGVARGDARMMASAGVFAWLLFIC--VAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWY  83

Query  84   KISGVWGNHEGSMLLWVLVLALFGGAVAFFSRSMPADLRACVLAVQAWIGSAFLLFILLT  143
            ++++ WG HEGS+LLWVL+++    AVA FSR +PAD+ A VLAV + + ++FL FIL+T
Sbjct  84   RVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFT  143

Query  144  SNPFAR-LAAPPIEGNDLNPLLQDPGLAIHPPLLYFGYVGLSITFSFAAGALICGRIDAL  202
            S PFAR L+A P+EG DLNPLLQDPGL +HPPLLY GYVG+S++F+FA +AL+ GR+D+ 
Sbjct  144  SGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSA  203

Query  203  WARTVRPWILIAWIALTLGIAMGSYWAYYTLGWGGFWFWDPVENASLMPWLAATALLHSA  262
             +R  RPW L AW+ LTLGI +GS WAYY LGWGG WFWDPVENAS+MPWLA+TALLHS 
Sbjct  204  FTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSM  263

Query  263  AVMEKRDALKIWTIFLAILAFSFSLIGTFLVRSGVLTSVHAFASDPRRGIFILAILVFFI  322
            AV E+R ++K WT++L+I AFS+ L+GTFLVRSGVL SVHAFASDP RG+FILA++V+  
Sbjct  264  AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVT  323

Query  323  GGSLTLFAWRAPILKQGGLFAPISREAALVINNLLLTTACATVFVGTLYPLALEALTGEK  382
            GGSL LFA R+  ++     A  SRE+ L+ NN+LL +A   V++GTL PL    L    
Sbjct  324  GGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGS  383

Query  383  ISVGAPFFNATFVplsiplfllipfGQSLAWKRGDLYGVAQRLAFAILCGLGFMLLVALW  442
            ISVG PFFN+ F  L +P+ LL+  G  + W R+    + + L  A++  L + +L++  
Sbjct  384  ISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWL  443

Query  443  HGGPVLSVIMAGLAL--FTIIGSFTDLALRLFGHTAAGSEIWARLR---GLPRSAFGTAF  497
              + ++++   G+A+     + + ++   R+   T ++   W+ +    GL+ +  G AF
Sbjct  444  LEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAF  503

Query  498  ahaglgvtllglaatgwgaERIAHMKVGETVDVGGYELTLTELTPRQGPNYTELVGRTSV  557
                         +   + ER  +M+ G++V + +Y +T+ E+    GPNY   V+  +V
Sbjct  504  -------------SQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGV  550

Query  558  RSGGIEKAVIEPSQRFFPARRSSRAEAGIVTLGLGQVYMSIAEQSPDGGVNVRMFWKPLV  617
               G   AV+++ +R++ + R   +EA+I      ++Y +++E+  +G+  VR++ KP+V
Sbjct  551  TRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFV  610

Query  618  ILIW  621
              IW
Sbjct  611  RWIW  614

597) Astex_2014 in NC_014816


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  314 bits (1178),  Expect = 1e-86, Method: Compositional matrix adjust.
 Identities = 241/563 (43%), Positives = 370/563 (66%), Gaps = 16/563 (2%)

Query  63   TSDFSVSNVAKHSHTLKPLLYKISGAWGSHEGSMLLWCMVLISYGALVTLFGQGLPSGLR  122
             +DF+V+ VA +S+T  P+ Y+++++WG+HEGS+LLW +++ +    V++F++ +P+++ 
Sbjct  63   VNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIV  122

Query  123  HKVLGVQGLLGALFCGFTLFSSNPLARLDPA-PYEGQSLNPMLQDPALAFHPPLLYLGYv  181
             +VL+V G++ A F +F LF+S P+AR  PA P EG+ LNP+LQDP+L FHPPLLY+GYV
Sbjct  123  ARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYV  182

Query  182  gfsvvfafavaaLIEGRIGREWARWVRPWTLVAWVFLTLGIALGSFWAYYELGWGGWWFW  241
            GFSV FAFA+AAL+ GR++   +R  RPWTL AWVFLTLGI LGS WAYYELGWGGWWFW
Sbjct  183  GFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFW  242

Query  242  DPVENASFMPWLAATALLHSAIVLEKRDALKSWTVFLALLAFTFSMLGAFLVRSGVLTSV  301
            DPVENASFMPWLA+TALLHS  V E+R ++K+WT++L++ AF++ +LG+FLVRSGVL SV
Sbjct  243  DPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSV  302

Query  302  HAFAVDPQRGILLLAILFITAGAGFALYVFRAATLSSGGVFSPVSRESTlvlnnllvFVA  361
            HAFA DP RG+++LA++ + +G+++ L+  R+  + S    +  SRES L+ NN+L+  A
Sbjct  303  HAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAA  362

Query  362  LSTVCLGTLYPLLMEALTGKTISVGTPYYNLSFVPAMSVAMLILPLASLMAWKRGDLKAV  421
            +  V LGTL PL+   L   +ISVG P++N  F   M    L+L +++L+ W R+  + +
Sbjct  363  MLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNI  422

Query  422  GQRLALAGGISLFLAVLGAVLMGNGEAKKVLSIGTGFLLGGWVILGSWRVLQERTHLLKV  481
             + L  A   +L L+VL + L+   E K +   + G  ++ W+      VL     + +V
Sbjct  423  RKLLWAAVVTTLVLSVLLPWLL---EDKIIAMTAVGMAMACWIA-----VLAVAEAVQRV  474

Query  482  PFSESLRRFSALPLATHGMVLAHVGLGLFVMGAVVETQAKLSAVDHLRVGGALRVGAYEV  541
            +      R +  +L+  GMV AH+GL++ + G     +  +    ++R G+++ +  Y  
Sbjct  475  S------RGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRF  528

Query  542  RLSDIKSVVGPNYEAERGVLNVRRGGKSVCQALPERRFYPASSTVTTEVALCFQPLNDLY  601
             + +++ + GPNY +  +++ V R G +     +E+R+Y +S  V TE A+      DLY
Sbjct  529  TFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLY  588

Query  602  FVLGEPSPDG-WQVRALYNPWAR  623
              LGE   +G W VR  Y+P  R
Sbjct  589  AALGEELDNGAWAVRLYYKPFVR  611

598) PP1Y_AT14253 in NC_015580


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  313 bits (1173),  Expect = 3e-86, Method: Compositional matrix adjust.
 Identities = 243/559 (44%), Positives = 376/559 (68%), Gaps = 8/559 (1%)

Query  53   SFLCLIYVFAVTDLSVKLVAMNSHSMKPLVFKIAGAWGNHEGSMLLWVTVMGMAGGFVAL  112
            +F+ L+  F V D++V  VA NS++  P+ +++A++WG HEGS+LLWV +M+     VA+
Sbjct  53   AFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAV  112

Query  113  IERRLPEPTMLATLAGQAFVSLGFYAFLLIASNPFER-LSPVPAEGNGLNPLLQDLGLAF  171
            + R++P   +   LA  + V  GF AF+L++S PF R L++ P EG +LNPLLQD GL F
Sbjct  113  FSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIF  172

Query  172  HPPTLYLGYVGLSVAFSFAIGALVTREVGPAFARAMRPWVMGAWIFLTVGITAGSYWAYY  231
            HPP LY+GYVG+SVAF+FAI+AL++  +++AF+R  RPW ++AW+FLT+GI  GS WAYY
Sbjct  173  HPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYY  232

Query  232  ELGWGGWWFWDPVENASLMPWLAATALLHSASVLAARNALRAWTIMLGVVAFSMSMIGTF  291
            ELGWGGWWFWDPVENAS+MPWLA+TALLHS +V   R +++AWT++L++ AFS+ ++GTF
Sbjct  233  ELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTF  292

Query  292  LVRSGILTSVHAFAVDPERGTFilallainiggaltlFALRAATVTEGERFAVVSREGAL  351
            LVRSG+L SVHAFA DP RG FILA++ +  GG+L LFA+R+  V      A+ SRE+ L
Sbjct  293  LVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLL  352

Query  352  VFNNVMLSAILGIVLFGTLYPLVAEAMG-AKVSVGPPYFNPMSALFAVPMLMVLAVGPLL  410
            + NNV+L A + +VL+GTL PLV   +G + +SVG P+FN M + + VP  ++L+VGPL+
Sbjct  353  LGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLV  412

Query  411  RWRRDAFSRVGKRLVIPamlvaagviallvvggvaflpfiglalaaglawaslMPLRERN  470
            RW RD  +R  ++L+ +A++ +  +  LL       +  +     A   W +++++ E  
Sbjct  413  RWGRDR-PRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAV  471

Query  471  LR-----RTPLPVWGMVIAHFGIAVALFGMSSESAFSVEKLVAVRPGETTQVGPWLVRLE  525
             R     +T+L+ WGMV AH+G+AV++ G++    +SVE+ V +R+G++  +      + 
Sbjct  472  QRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFR  531

Query  526  RVEPVAGPNWTALEAALKVRYKDSDPVIARPQSRSFWAPPQQTSESSLLTRWNGQLYSVL  585
             V  ++GPN  +  A + V   +    + +++ R + ++    +E+++      +LY+ L
Sbjct  532  EVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAAL  591

Query  586  GGEAEDGRWQLRLWWKPFV  604
            G E ++G W +RL  KPFV
Sbjct  592  GEELDNGAWAVRLYYKPFV  610

599) cycK in NC_008783


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  312 bits (1170),  Expect = 5e-86, Method: Compositional matrix adjust.
 Identities = 251/624 (41%), Positives = 411/624 (66%), Gaps = 12/624 (1%)

Query  1    MLIELGHIFLATVFAVSLLQVFLSIFGVVREEYSLMQAVVSLTYilfillllsfliiVHA  60
            M+ E GH +L   ++V+LL    ++ GV R +  +M +   ++ +LFI +  +F+++VHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   YVISDFSVLNVVRNSHSEKPMLYKIVGVWGNHEGSMLLWVLILAFFSLLVALFGQKLPVQ  120
            +V++DF+V  V  NS+++ P+ Y++ + WG HEGS+LLWVL+++  +L VA+F++++P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  FKASVLGCQSLITSAFLLFILFLSNPFLRINPP-ALQGSDLNPVLQDIALAIHPPLLYLG  179
            + A VL+  +++ ++FL FILF S PF R  P+ +++G DLNP+LQD +L +HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSVCFSFSVAALITGYVDRVWARWVRPWVLLAWIFLTLGIMVGSYWAYYELGWGGYW  239
            YVGFSV F+F++AAL++G +D   +R  RPW L AW+FLTLGI++GS WAYYELGWGG W
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENVSFMPWLAGTALLHSILVLEKRGALKNWTLFLAILTFSLSLMGTFLVRSGILI  299
            FWDPVEN SFMPWLAGTALLHS+ V E+R+++K WTL+L+I +FSL L+GTFLVRSG+L+
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFAVDPARGWALLSILFFFTGSAFLLFALRAPILKTDGFFLPISREGFIVlnnlflt  359
            SVH+FA DPARG  +L+++ + TG+++LLFA+R+  +++       SRE++++ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  tatatiligtlYPYFFETLTGQKISVGAAFFNLTFGPLMVPLLFFVPFGPIIAWKRGDLL  419
            +A   +L+GTL P     L    ISVG +FFN  F  LMVP+ +++  GP++ W R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  AVFERLWFVFLLSCIACFITFYAASWRDIFCAlgvglsvfvflgglADLWVKSGHRKTPF  479
             +   LW     + ++ ++     +W      L   +     +G     W+ +    +  
Sbjct  421  NIRKLLW----AAVVTTLVLSVLLPW-----LLEDKIIAMTAVGMAMACWI-AVLAVAEA  470

Query  480  FVRIKRFLGLPWSVFGAALAHMGLGITLFGIVYSSLFGQERILVMKIGDSITMADKVIRF  539
              R+ R    + S  G   AH+GL++T+ GI +S  ++ ER + M+ GDS+T+ D  + F
Sbjct  471  VQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTF  530

Query  540  DEVRNVAGSNYSAMQFDFKIYENQNSIHTMTASKRFYSSQNISTTKVGIQSYGFSQFYIV  599
             EVR+++G+NY +    + +  + ++   + A KR+Y++  +  T  +I++    ++Y  
Sbjct  531  REVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAA  590

Query  600  PG-RIDDQGLALHIWWKPYVICIW  622
             G  +D+ + A+++  KP+V  IW
Sbjct  591  LGEELDNGAWAVRLYYKPFVRWIW  614

600) Cseg_1010 in NC_014100


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  311 bits (1167),  Expect = 8e-86, Method: Compositional matrix adjust.
 Identities = 250/572 (44%), Positives = 388/572 (68%), Gaps = 20/572 (3%)

Query  57   LIHAFVVSDFSVANVAANSHTAKPMLYKVAGAWGSHEGSMLLWCLVLTGYGAAMAFFGDS  116
            L+HAFVV+DF+VA VA+NS+T  P+ Y+VA++WG+HEGS+LLW L+++G   A+A F+  
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQ  116

Query  117  LPPRLRSYAIAIQGALGVLFLAYTVFASNPMERLLDA-PIEGRSLNPLLQDPALAFHPPF  175
            +P+ + +  +A+ G +   FLA+ +F+S P  R L A P+EGR LNPLLQDP+L FHPP+
Sbjct  117  VPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPL  176

Query  176  LYAGYVGFSVVYSLSLAALIEGRIDAAWARWVRPWTLAAWSLLTVGITLGAFWAYYELGW  235
            LY GYVGFSV +++++AAL+ GR+D+A +R  RPWTLAAW +LT+GI LG+ WAYYELGW
Sbjct  177  LYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGW  236

Query  236  GGWWFWDPVENASFMPWLIGAALLHSAIVTEKRGALPGWtaflalaaftfSMLGAFLVRS  295
            GGWWFWDPVENASFMPWL G+ALLHS  VTE+R+++ +WT +L++ AF++ +LG+FLVRS
Sbjct  237  GGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRS  296

Query  296  GVLTSVHAFAVDPTRGVLLLIMMGVaagagfllfalRAPTLNPGGQFRTISRESAIVLNN  355
            GVL SVHAFA DP+RG+++L  M + +G+++LLFA+R+  + +  +    SRES ++ NN
Sbjct  297  GVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNN  356

Query  356  ILLSTATAVVLLGTLFPLIREALDGEAVSVGAPFFNLTFVPLMILAFA-VLPAGPLLAWK  414
            +LL +A  VVLLGTL+PL++  L+  ++SVG PFFN  F  LM+ +FA +L  GPL+ W 
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMV-PFALLLGVGPLVRWG  415

Query  415  RGDAGGvarklwvvlaaavvlgliayavvQPR-KALASGGLVVGFWLIGGALLELSERLK  473
            R+ +  + + LW  + +++VL+++   +++ +  A+++ G+ ++ W+   A+ E  +R+ 
Sbjct  416  RDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS  475

Query  474  LFrapaaesarrarGLPRGAWGTTLAHAGLGLFVLGASFETAWRVEAAQALSLNDSQPLG  533
                       R+   + + WG   AH GL++ + G +F     VE    +   DS  + 
Sbjct  476  -----------RGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIH  524

Query  534  AYTLTLKKVGTVEGPNYLAErgvvdvvdkagrvvCRATPERRFYPTGGQTTSEVSICPGL  593
             Y +T++ V  + GPNY +  ++++V   +        +E+R+Y T+    +E +I  GL
Sbjct  525  DYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAV-LHAEKRLYNTSRMVMTEAAIDGGL  583

Query  594  LDDIYVVMGERRAGEGGKPAWLIRAYVNPWVR  625
              D+Y  +GE    E ++ AW +R Y +P VR
Sbjct  584  TRDLYAALGE----ELDNGAWAVRLYYKPFVR  611

601) ccmF in NC_016026


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  311 bits (1167),  Expect = 8e-86, Method: Compositional matrix adjust.
 Identities = 253/580 (44%), Positives = 394/580 (68%), Gaps = 20/580 (3%)

Query  44   VFQCATITAAFAALIYSFVVSDFSLTLVVNNSHTLKPLLYKIAGTWGNHEGSMVLWVLIL  103
            +F C  +++AF  L+ +FVV+DF+++ V  NS+T  P+ Y++A+TWG HEGS++LWVL++
Sbjct  46   LFIC--VAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLM  103

Query  104  A--LFGALSLRQAMPDAMRAMLLTVQGMQGVGILAFILFTSNPFTRLNPA-PADGMDLNP  160
            +   ++   + + +P  + A +L+V GM   G+LAFILFTS PF+R  PA P +G DLNP
Sbjct  104  SGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNP  163

Query  161  LLQDPGLAFHPPLLYLGYVGFSIVFSFACAGLLTNAINRDWAALVRPWVLAAWSGLSAGI  220
            LLQDPGL FHPPLLY+GYVGFS+ F+FA A+LL+  ++   + + RPW LAAW  L+ GI
Sbjct  164  LLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGI  223

Query  221  ALGSWWAYYELGWGGFWFWDPVENASLMPWLCGTALLHSIIITRHRGALPRWSVllalla  280
             LGS WAYYELGWGG WFWDPVENAS+MPWL GTALLHS+ +T +R+++  W++LL++ A
Sbjct  224  VLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICA  283

Query  281  YTFSLLGTFLVRSGVLTSVHAFATDPSRglfilgllavfagggfllyglraPDLKSDAGF  340
            +++ LLGTFLVRSGVL SVHAFA+DP+RG+FIL+++ + +GG++LL+++R+  ++S    
Sbjct  284  FSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNN  343

Query  341  KPVSRESALVLNNLILTAMAATILVGTLYPLILSSLNAGQISVGPPFFNATILPLAVPLI  400
               SRES L+ NN++L A    +L+GTL PL+   L  G ISVG PFFN+ +  L VP+ 
Sbjct  344  ALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFA  403

Query  401  LLMGVGPFLAWKKADLTAVRGQLTTAALITGAIVGLIFAIQTETSFIVLGGFALGL--WA  458
            LL+GVGP++ W +     +R +L  AA++T  +++++++   E  +I + + ++++  W 
Sbjct  404  LLLGVGPLVRWGRDRPRNIR-KLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI  462

Query  459  IITTLADTWAHR----AKLTLSGWGMRLAHiglgvavigivgTTLWKIETAQILKPGEHL  514
             + ++A++  +R    +K +LS WGM  AH+GL+V++ GI  +    +E    +++G+ +
Sbjct  463  AVLAVAEA-VQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSV  521

Query  515  TAGRWTITLESVDAGFGPNYSTIMAHV-TARTGDTAIKLSPERRYYPVGGMATTEAAIHT  573
            T     +T+  V    GPNY   +A +  +R G+    L +E+R Y  + M  TEAAI+ 
Sbjct  522  TIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDG  581

Query  574  SLRDDIYVVLGQQDTMDQTGPGNGWIIRATTHPLVALIWG  613
            +L  D+Y  LG++  +D+     +W +R    P+V  IW+
Sbjct  582  GLTRDLYAALGEE--LDN----GAWAVRLYYKPFVRWIWA  615

602) Marme_3200 in NC_015276


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  310 bits (1161),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 304/644 (48%), Positives = 457/644 (71%), Gaps = 10/644 (1%)

Query  1    MIPELAHFSLMLATCFAALGFVVPLVGLYKRDSLLVRFSLPLTYLVGAAVLIAFVGLCYS  60
            M+PE +H  L LA   A L  V PL G+ + D+ ++  +  ++ L+   V  AF  L  +
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FSVDDFSVLYVADNSSRSLPFGFKISAVWGGHEgslllwglilsgwsCCVAYRSRHLRED  120
            F V+DF+V YVA+NS+  LP  ++++A WG+HEGSLLLW L++SGW+  VA  SR++  D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  VRGIVLAVlslislgflsfllftsspfIRLLPNVPQSGGDLNPLLQDFGLIIHPPMLYMG  180
            + + VLAV++++  GFL+F+LFTS+PF R LP  P  G DLNPLLQD GLI+HPP+LYMG
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGFAVPFAFAIAALVTGEMNAQWARWVRPWVNFAWAFLTVGIALGSWWAYYELGWGGWW  240
            YVGF+V+FAFAIAAL++G +++  +R  RPW   AW FLT+GI LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENASFMPWLAGTALIHSLAASEKRGVFKSWTLLLAIftfglsflgtflVRSGVLT  300
            FWDPVENASFMPWLAGTAL+HS+A +E+R+ FK+WTLLL+I +F+L +LGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFASDPSRGAYiltmlllivgggmllFALRASTLRTESFFEFSGKESWlllnnillt  360
            SVHAFASDP+RG +IL+ ++L+ GG++LLFA+R+  +R+     + ++ES LL NN+LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  tltlivlvgtlSPLVLESMGMGRVSVGPPYFNAVFNPIACALIFLIGIGPISRWQATSPL  420
            +  L+VL+GTL PLV   +G+G +SVG P+FN++F  +  ++ +L+G+GP+ RW    P 
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  YLLRVSWFPFVLAVAIASfcfqflvfdlfaflafSIAL--WVVIMTIRDLIGKVIVKDIN  478
             + ++ W + V ++ ++ +   +L   ++A  A ++A+  W+ ++++ + + +V      
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV------  474

Query  479  VFERMRRLPMSLYGMHVAHLGVAISLIGVILVSLNSEERFVRWHIGESVDVKQYQFMLMD  538
               R  + ++S  GM  AHLG+A+++ G+ +    S ER VR + G+SV + +Y+F + +
Sbjct  475  --SRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  539  VGVKRGANYIAQEAVFQVSDNNVALGEMIPEKRYYQTRGQVMTEAALSPGFTRDLYIALG  598
            V    G+NY +  A++ V+ +  + + + +EKR Y+T   VMTEAA+  G+TRDLY ALG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  599  EKYDDDSWSVKIYVKSFVRWIWLGALVMMLGGILAALDKRFKHR  642
            E  D+++W+V++Y K+FVRWIW G+L+M LGG+L   D R+++R
Sbjct  593  EELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

603) cycK in NC_009485


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  310 bits (1161),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 279/627 (45%), Positives = 416/627 (67%), Gaps = 18/627 (2%)

Query  1    MIAESGHYalvlalalalIQSTVPMLGAHQRDVALMNVGRSAALAQLVFAGLS--FIALI  58
            M++E GH  L LAL++AL+ S  P+ G  + D  +M  + ++ +A L+F  ++  F+ L+
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMM--ASAGVFAWLLFICVAGAFFVLV  58

Query  59   TLHVTSDFSVANVFENSHSMKPLLYKITGVWGNHEGSMLLWVSILALFGAMVALFGNNLP  118
               V +DF+VA V  NS++  P+ Y++++ WG HEGS+LLWV +++     VA+F+ ++P
Sbjct  59   HAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVP  118

Query  119  LSLRARVLAVQAWVAAAFYLFILMTSNPFAR-LATPPIEGRDLNPVLQDIGLAVHPPMLY  177
              + ARVLAV + V A+F  FIL TS PFAR L++ P+EGRDLNP+LQD GL  HPP+LY
Sbjct  119  ADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLY  178

Query  178  LGYVGFSISFSFAIAALIEGRIDAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGG  237
            +GYVGFS++F+FAIAAL+ GR+D+A +R  RPWTL AW+FLTLGI +GS WAYYELGWGG
Sbjct  179  MGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGG  238

Query  238  WWFWDPVENASLMPWLAGTALLHSALVMEKRNALKVWtillsiltfslsllgtflVRSGV  297
            WWFWDPVENAS+MPWLAGTALLHS  V E+R ++K WT+LLSI +FSL LLGTFLVRSGV
Sbjct  239  WWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGV  298

Query  298  ITSVHAFASDPTRGVFILGILVLFIGGSLTLFAGRATALKQGGLFAPISREGALVLNNLL  357
            + SVHAFASDP+RG+FIL+++VL  GGSL LFA R+  ++     A  SRE+ L+ NN+L
Sbjct  299  LVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVL  358

Query  358  LTVSCATVLFGTLYPVIMEALDF-KLSVGAPFYNltfgplfallllIVPFGPMLAWKRGD  416
            L  +   VL+GTL P++   L++  +SVG PF+N  F  L   + L++  GP++ W R+ 
Sbjct  359  LMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR  418

Query  417  lvaaaqrl-laagvaslvaiaiawawarggsaLAPLGIGLGIFVITGAIVDLVERSGVAR  475
                 + L  A   + ++++ ++W       A++++G++++  +   A+ + V+R  V+R
Sbjct  419  PRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQR--VSR  476

Query  476  VPFRTALHRTRGLPRSVWGTAFAHAGLGIALLGIVCETTWNSELISTLRPGDVRNLAGYE  535
               +T+L        S WG   AH GL++++ GI      + E    +R+GD   + +Y 
Sbjct  477  GT-KTSL--------SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  536  IKFDGMTQRQGPNFTEVVSTFIISEDGRQLSVMTPSKRSFATRGMSTTEAALMTRGVSQL  595
            + F  + +  GPN+   V+ + ++ +G   +V+ + KR + T  M  TEAA+      +L
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  596  YVSLGDTTADGGLAVRIYHKPLVLLIW  622
            Y +LG+   +G+ AVR+Y KP+V  IW
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIW  614

604) CC_2760 in NC_002696


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  309 bits (1160),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 252/582 (44%), Positives = 395/582 (68%), Gaps = 20/582 (3%)

Query  47   FVALLVSFAALIYAFVTSDFSVTNVATNSHTDKPMLYKVAGAWGSHEGSMLLWCLVLTGF  106
            F+ +  +F  L+ AFV +DF+V+ VA NS+T+ P+ Y+VA++WG+HEGS+LLW L+++G 
Sbjct  47   FICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGW  106

Query  107  GAAMAVFGDSLPPRLRAYAIAVQGGLGVMFLAYTVLASNPLARLLEA-PIEGKSLNPLLQ  165
              A+AVF+  +P+ + A  +AV G +   FLA+ +++S P+AR L A P+EG+ LNPLLQ
Sbjct  107  TLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQ  166

Query  166  DWALAFHPPflyvgyvgfsvvyslsMAALIEGRIDAAWARWIRPWTLAAWSMLTVGITLG  225
            D +L FHPP+LY+GYVGFSV +++++AAL+ GR+D+A +R  RPWTLAAW  LT+GI LG
Sbjct  167  DPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLG  226

Query  226  AFWAYYELGWGGWWFWDPVENASFMPWLIGAALLHSAIVTERRGALPGWTAFLALAAYTF  285
            + WAYYELGWGGWWFWDPVENASFMPWL G+ALLHS  VTE+R+++ +WT +L++ A+++
Sbjct  227  SAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSL  286

Query  286  SMLGAFLVRSGVLTSVHAFAVDPTRGVLLLIMMAVaagagfllfglRAPSLNRGGQFRPI  345
             +LG+FLVRSGVL SVHAFA DP+RG+++L  M + +G+++LLF++R+  +    +    
Sbjct  287  CLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALW  346

Query  346  SRESAIVLNNILLSTATAVVLLGTLYPLIREAMDGEAVSVGAPFFNLTFTPLMILAFA-V  404
            SRES ++ NN+LL +A  VVLLGTL PL++  ++  ++SVG PFFN  FT LM+ +FA +
Sbjct  347  SRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMV-PFALL  405

Query  405  LPAGPLLAWKRGDAKGvarklwvvlalaallgliayavvQPR-KALASGGLVVGFWLIGG  463
            L  GPL+ W R+ ++ + + LW  +  + +L+++   +++ +  A+++ G+ ++ W+   
Sbjct  406  LGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI---  462

Query  464  ALLEIAERLKLARAPFAESLRRAHGLPRGAWGTTLAHAGLGVFVLGASFETAWRVEAAQA  523
            A+L +AE +        + + R+   + + WG   AH GL+V + G +F     VE    
Sbjct  463  AVLAVAEAV--------QRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVR  514

Query  524  LSLNGSQPLGAYTVTLTDVVTIEGPNYLAERGIITVTNKAGAEVCRAQPERRFYPTGAQT  583
            +   +S  +  Y  T+ +V  I GPNY +  ++I VT  + +E    ++E+R+Y T+   
Sbjct  515  MRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAV-LHAEKRLYNTSRMV  573

Query  584  TSEVAICAKGLDDIYVVMGERRAGEGGKPAWLVRAYVNPWVR  625
             +E AI +    D+Y  +GE    E ++ AW VR Y +P VR
Sbjct  574  MTEAAIDGGLTRDLYAALGE----ELDNGAWAVRLYYKPFVR  611

605) CCNA_02848 in NC_011916


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  309 bits (1160),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 252/582 (44%), Positives = 395/582 (68%), Gaps = 20/582 (3%)

Query  47   FVALLVSFAALIYAFVTSDFSVTNVATNSHTDKPMLYKVAGAWGSHEGSMLLWCLVLTGF  106
            F+ +  +F  L+ AFV +DF+V+ VA NS+T+ P+ Y+VA++WG+HEGS+LLW L+++G 
Sbjct  47   FICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGW  106

Query  107  GAAMAVFGDSLPPRLRAYAIAVQGGLGVMFLAYTVLASNPLARLLEA-PIEGKSLNPLLQ  165
              A+AVF+  +P+ + A  +AV G +   FLA+ +++S P+AR L A P+EG+ LNPLLQ
Sbjct  107  TLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQ  166

Query  166  DWALAFHPPflyvgyvgfsvvyslsMAALIEGRIDAAWARWIRPWTLAAWSMLTVGITLG  225
            D +L FHPP+LY+GYVGFSV +++++AAL+ GR+D+A +R  RPWTLAAW  LT+GI LG
Sbjct  167  DPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLG  226

Query  226  AFWAYYELGWGGWWFWDPVENASFMPWLIGAALLHSAIVTERRGALPGWTAFLALAAYTF  285
            + WAYYELGWGGWWFWDPVENASFMPWL G+ALLHS  VTE+R+++ +WT +L++ A+++
Sbjct  227  SAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSL  286

Query  286  SMLGAFLVRSGVLTSVHAFAVDPTRGVLLLIMMAVaagagfllfglRAPSLNRGGQFRPI  345
             +LG+FLVRSGVL SVHAFA DP+RG+++L  M + +G+++LLF++R+  +    +    
Sbjct  287  CLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALW  346

Query  346  SRESAIVLNNILLSTATAVVLLGTLYPLIREAMDGEAVSVGAPFFNLTFTPLMILAFA-V  404
            SRES ++ NN+LL +A  VVLLGTL PL++  ++  ++SVG PFFN  FT LM+ +FA +
Sbjct  347  SRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMV-PFALL  405

Query  405  LPAGPLLAWKRGDAKGvarklwvvlalaallgliayavvQPR-KALASGGLVVGFWLIGG  463
            L  GPL+ W R+ ++ + + LW  +  + +L+++   +++ +  A+++ G+ ++ W+   
Sbjct  406  LGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI---  462

Query  464  ALLEIAERLKLARAPFAESLRRAHGLPRGAWGTTLAHAGLGVFVLGASFETAWRVEAAQA  523
            A+L +AE +        + + R+   + + WG   AH GL+V + G +F     VE    
Sbjct  463  AVLAVAEAV--------QRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVR  514

Query  524  LSLNGSQPLGAYTVTLTDVVTIEGPNYLAERGIITVTNKAGAEVCRAQPERRFYPTGAQT  583
            +   +S  +  Y  T+ +V  I GPNY +  ++I VT  + +E    ++E+R+Y T+   
Sbjct  515  MRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAV-LHAEKRLYNTSRMV  573

Query  584  TSEVAICAKGLDDIYVVMGERRAGEGGKPAWLVRAYVNPWVR  625
             +E AI +    D+Y  +GE    E ++ AW VR Y +P VR
Sbjct  574  MTEAAIDGGLTRDLYAALGE----ELDNGAWAVRLYYKPFVR  611

606) Ssed_0481 in NC_009831


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  309 bits (1159),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 247/574 (44%), Positives = 404/574 (71%), Gaps = 8/574 (1%)

Query  45   LMTFTITASILCLLISFITDDFSVAYVANHSNTQLALLYKVAAVWGSHEGSMLFWVVAIA  104
            L+ + ++++++ L+ +F+ +DF+VAYVA +SNTQL++ Y+VAA WG+HEGS+L+WV+ ++
Sbjct  45   LLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMS  104

Query  105  IWG-CIIVFSSKYRDRLFIGRLIAILASVIAGFNLFMLFTSNPFARLLPNFPIEGRDLNP  163
             W   + VFS +    + ++R++A+++ V AGF  F+LFTS PFAR LP FP+EGRDLNP
Sbjct  105  GWTLAVAVFSRQVPADI-VARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNP  163

Query  164  ILQDIGLIFHPPLLFLGYVgltvtfaaaiaallggkltRTHAGYLRPWALLAWVFLTGGN  223
            +LQD GLIFHPPLL++GYVG++V+FA AIAALL+G+L  + + + RPW+L AWVFLT G 
Sbjct  164  LLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGI  223

Query  224  AFGSWWAYNELGWGGWWFWDPVENASFIPWLVATALLHSVVLSHRRDsfkvttlllclla  283
             +GS WAY ELGWGGWWFWDPVENASF+PWL +TALLHS+ ++++R +FK  TLLL + A
Sbjct  224  VLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICA  283

Query  284  fslsllgtflVRSGIVQSVHAFASDPTRGMSILFLLGVFVCGALTLFALKANQIKSELNF  343
            FSL LLGTFLVRSG++ SVHAFASDP+RGM IL ++ +   G+L LFA+++++++S +N 
Sbjct  284  FSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNN  343

Query  344  TLVSRDSVILLGNivlvvaaisvllGTFYPLLFELLDIGTLSVGAPYFNSIFIPLTFMAV  403
            +L SR+S++L  N++L+ A + VLLGT+ PL+   L++G++SVG P+FN++F  L     
Sbjct  344  ALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFA  403

Query  404  LLMGAAPLISWKREKFSALRPlivlfiialaiaETL--SMLTGSGFNIWLFLGATSATWL  461
            LL+G +PL+ W R++   +R L+   +++  +   L   +L +  + +   +G + A W+
Sbjct  404  LLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAM-TAVGMAMACWI  462

Query  462  -ILCLGYLLFRLRHQGIEGLARKSAMLIAHLGVAISIIGATSVSNFEQQELLRMGPAQGK  520
             +L ++  + R+ +    +L+   +M+ AHLG+A++I G +   N+  +  +RM ++++ 
Sbjct  463  AVLAVAEAVQRVSRGTKTSLS-YWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSV  521

Query  521  VVAGYTFVYEDTVNVDEKSYTAIQANIRVTDADDNFIGYITPQRQTFKTNAMEVSKAGIM  580
             + +Y F + +  ++   +Y +  A I VT  ++   + + ++++ ++T+ M ++ A+I 
Sbjct  522  TIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEP-EAVLHAEKRLYNTSRMVMTEAAID  580

Query  581  RNIFRDLYVSSGLQLSDTEYLIRISYKPLACWIW  614
              + RDLY + G +L +    +R+ YKP+  WIW
Sbjct  581  GGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

607) nrfE in NC_009348


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  308 bits (1156),  Expect = 5e-85, Method: Compositional matrix adjust.
 Identities = 249/565 (45%), Positives = 380/565 (68%), Gaps = 25/565 (4%)

Query  61   FARDDFTVSYVAQHANSALTMGFKLAAVWGGHEGSMLFFVFALALWGALVALCSQQVDSL  120
            F  +DFTV+YVA ++N+ L + +++AA WG+HEGS+L+ V+ ++ W   VA+ S+QV + 
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  IRARVLAIMGLIVGLFGLYTLVFSSPFDRQFPG-PLEGRDLNPMLQDIGLIIHPPLLYLG  179
            I ARVLA+MG++ + F  + L  S+PF R +P+ P+EGRDLNP+LQD GLI+HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFAVNFAFAMAALHSGRLDGAVAHWSRPWALGSWVFLTAGILLGSWWAYYELGWGGWW  239
            YVGF+V FAFA+AAL SGRLD+A ++ +RPW+L++WVFLT GI+LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLLPWLLGTALLHALIVCEKRGAYGHGVLLLSIFTFALSLLGTFVVRSGVLT  299
            FWDPVENAS++PWL GTALLH++ V E+R+++    LLLSI +F+L LLGTF+VRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFAVDPNRgltlllllglllttaltlfalRADTRAPYARFGFWSKEGLLGaaillls  359
            SVHAFA DP RG+ +L ++ L+   +L LFA+R++   +    ++WS+E+LL +  +LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  vacacvllGTFYPMVFQSLHLGSLSVGAPYFNAVFV------PLALALMALMT-------  406
             A   VLLGT+ P+V + L LGS+SVG P+FN++F       +L L++ +L+        
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  407  QIPRLRWQCLAASPPIKRIVPPllgllgggllslgYRDLGALSWVGlvanvlslwlvasl  466
            +I +L W  + ++  +  ++P LL     ++ ++   +++   W++++A   ++  V+  
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAV---GMAMACWIAVLAVAEAVQRVS--  475

Query  467  llnFSFKTHGLSANRLGSLLAHLGVAICALGINQVSHYSQEGGTVLKAGSPYQLGAYTFR  526
                  +    S +  G + AHLG+A+   GI    +YS E +  ++AG +  +  Y F 
Sbjct  476  ------RGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  527  YEGSEPLLGPNYTAERITLSVHKGAKEVARLMPERHHYSVRTMNMNEPGIQWGLFGDLYV  586
            +     + GPNY +    ++V + +   A L +E++ Y+   M M E++I+ GL  DLY 
Sbjct  530  FREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYA  589

Query  587  VLGEKMEPDAYAMRLHYKPLVRWIW  611
             LGE ++ +A A+RL YKP+VRWIW
Sbjct  590  ALGEELDNGAWAVRLYYKPFVRWIW  614

608) RPD_2003 in NC_007958


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  308 bits (1154),  Expect = 8e-85, Method: Compositional matrix adjust.
 Identities = 281/626 (45%), Positives = 410/626 (66%), Gaps = 15/626 (2%)

Query  1    MIAEAGHYalvlalalalIQSTVPILGARLNDGGLMNVARSTALAQFAFVAASFGALVYL  60
            M++E GH  L LAL++AL+ S  P+ G    D+ +M  A   A   F  VA++F  LV  
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   NVTSDFSVLNVYENSHSAKPLLYKITGVWGNHEGSMLLWVAILALFGGLVAAFGNNLPLS  120
             V +DF+V  V  NS++  P+ Y++++ WG HEGS+LLWV +++     VA F+ ++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRAHVLAVQAWVASAFYLFILITSNPFLR-IPNPPIEGRDLNPVLQDIGLAVHPPLLYLG  179
            + A+VLAV + V ++F  FIL+TS PF R +P  P+EGRDLNP+LQD GL  HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGfsisfsfaaaaLLEGRLDAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGGWW  239
            YVGFS++F+FA AALL GRLD+A +R  RPWTL AW+FLTLGI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLAGTALLHSALVMEKRNALKVWtillailtfslsllgtflVRSGVLT  299
            FWDPVENAS+MPWLAGTALLHS  V E+R ++K WT+LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHTFATDPSRGVFILVILCVFIGGSLALFAWRASALKQGGLFAPISREGALVLNNLFLT  359
            SVH+FA+DP+RG+FIL ++ +  GGSL LFA R+  ++     A  SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  TACATVFVGTLYPLALEVVTGDKISVGAPFFNLTFGPLFVPLMLAMPFGPLLAWKRGDIV  419
            +A   V++GTL PL    +  + ISVG PFFN  F  L VP+ L +  GPL+ W R D  
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR-DRP  419

Query  420  GAAQRLIAAGvvalltvalvwawttGGPV--LAPLAIGLAVFVIAGALADIAERIGLFRN  477
               ++L+ A+VV+ L ++++ +W   + +  ++++++++A  +   A+A+  +R++    
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS----  475

Query  478  PLSISTRRARGLPRSAWGTMFAHAGVGMALIGIVCETTWNSEHIAAMKEGDTARIAGYEL  537
                   R+   + S WG + AH G+++++ GI      + E+   M+ GD+  I +Y +
Sbjct  476  -------RGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRF  528

Query  538  KFEGAMQRQGPNFRELETRFSISEGGQPVGVMTPSKRSFTTRGTSTTEAALLTRGFSQLY  597
             F    +  GPN+R   + ++++  G+P +V+ + KR + T     TEAA+      +LY
Sbjct  529  TFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLY  588

Query  598  VSLGEIDAAGAVTVRIYHKPMVLLIW  623
             +LGE    GA +VR+Y KP V  IW
Sbjct  589  AALGEELDNGAWAVRLYYKPFVRWIW  614

609) GLX_11000 in NC_016027


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  308 bits (1154),  Expect = 8e-85, Method: Compositional matrix adjust.
 Identities = 272/628 (44%), Positives = 407/628 (65%), Gaps = 19/628 (3%)

Query  1    MNPELGNFALALACCMAAGQAILPLIGAQRRDTRLMALAPALAIGQMIALITAFACLVHA  60
            M PE G+  L LA  +A   ++ PL G  R D+R+MA A  +A    I +  AF  LVHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   AITNDFSVQNVAANSAVSKPLLYKITGVWGNHEGSVLLWAMILSICGGAVALFGRNLPSA  120
             + NDF+V  VA+NS    P+ Y++++ WG HEGS+LLW +++S    AVA+F+R++P+ 
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LQARVIGVLGGVAAGFELFCLTTSNPFARVWPA-PLDGQGMNPLLQDPGLAFHPPILYTG  179
            + ARV++V+G V AGF  F L TS PFAR  PA P++G+++NPLLQDPGL FHPP+LY G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFAVPFAFAIAALLEGRVDAAWGRWVRPWAVAAWCFLTCGIAMGSWWSYYVLGWGGYW  239
            YVGF+V+FAFAIAALL GR+D+A  R  RPW++AAW FLT GI +GS W+YY LGWGG W
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLIPWLTGTALVHSAIVVEKREALKIWTVLLAIGTFSFSLSGTFLVRSGILN  299
            FWDPVENAS++PWL+GTAL+HS  V E+R ++K WT+LL+I +FS+ L GTFLVRSG+L 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFANDPARgvfilgllalviggslllfAIRAPQLTTGGLFAPVSREGLLVLNNILLC  359
            SVHAFA+DPARG+FIL+++ LV GGSLLLFA+R+ ++ +    A  SRE+LL+ NN+LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  SICAVVLTGTMYPPFMSLLFGKTISVGKPFFDATTIPLAIPLMVFMGFGPMVPWKRAQMW  419
            +   VVL GT+ P     L   +ISVG PFF++    L +P+ +++G GP+V W R + +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  PVLRRlwwaacvalmalvvaTFRMRDIlavlatatav---WVICSSIADVAERL-RLFRQ  475
             + + LW A   +L+  V+    + D +  +++       W+   ++A+  +R+ R  + 
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  476  PLTYSWQRARSLPRAVFgaalahagvgivvlgiagMSQAAHRIVEVHVGESEMLAGDSWT  535
            +L+Y W    +            +    +     + + + +R V ++ G+S  + +   T
Sbjct  481  SLSY-WGMVAA----------HLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  536  LTDVHPAEGPNYSALVATIEVRHNGRLITTLHPSKRTFASQHQTTTEVAIHTNLMADIYG  595
            + +V+   GPNY + VA I V ++G   + LH+ KR + + +   TE AI+  L  D+Y+
Sbjct  530  FREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYA  589

Query  596  VLGDKHGDDVNPTYVLRLHYNPLAPWMW  623
             LG+  +++   +  +RL Y+P+  W+W
Sbjct  590  ALGEELDNG---AWAVRLYYKPFVRWIW  614

610) Mesop_5375 in NC_015675


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  308 bits (1154),  Expect = 9e-85, Method: Compositional matrix adjust.
 Identities = 274/611 (45%), Positives = 405/611 (67%), Gaps = 24/611 (3%)

Query  20   TIVPLFGARLNNQRLMAVGGPVAVTGFALTALSFVALASAYANSDFSVASVWENSHSLQP  79
            ++ PL G    + R+MA +G  A   F   A +F  L  A+  +DF+VA V  NS++  P
Sbjct  21   SVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLP  80

Query  80   LIYKITGTWGNHEGSMLLWVLILTFFGALVAAFGSNLPATLRANVLAVQGAIGATFFLFI  139
            + Y++++TWG HEGS+LLWVL+++     VA F+ ++PA + A VLAV G + A F+ FI
Sbjct  81   VWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFI  140

Query  140  LATSNPFIRLNPA-PIEGRDLNPVLQDLGLAIHPPLLYLGYVGFSICFSFSVAALIEGRI  198
            L TS PF R  PA P+EGRDLNP+LQD GL +HPPLLY+GYVGFS+ F+F++AAL+ GR+
Sbjct  141  LFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRL  200

Query  199  DASWARWVRPWTLVAWMFLTGGIAMGSYWAYYELGWGGFWFWDPVENASFMPWLAGTALL  258
            D++ +R  RPWTL AW+FLT GI +GS WAYYELGWGG WFWDPVENASFMPWLAGTALL
Sbjct  201  DSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALL  260

Query  259  HSAIVMEKRSALKIWtlllailtfslsllgtflVRSGVLTSVHAFATDPTRGIFILCILT  318
            HS  V E+R+++K WTLLL+I +FSL LLGTFLVRSGVL SVHAFA+DP+RG+FIL ++ 
Sbjct  261  HSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMV  320

Query  319  LFIGGSLSLFALRASKLTAGGLFHPISREGalvlnnlflttatatvlvgtlYPLVVEAFS  378
            L  GGSL LFA+R+ ++ +       SRE+ L+ NN++L +A   VL+GTL PLV   ++
Sbjct  321  LVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLG  380

Query  379  SDKISVGAPFFNLTFAPLMVPLLVMVPFGPLLAWKRGDVFAVAQRLMvafagalltalvt  438
             + ISVG PFFN  F+ LMVP+ +++  GPL+ W R+    + + L  A   +L+ +++ 
Sbjct  381  LGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLL  440

Query  439  tlfIDGASV-LAAIGVGLAVWLILGALTDIAVKAGFGNVTTGN---MVRRLLGLPRSVFG  494
              ++++  + ++A+G+++A W+ + A+++   + + G  T+ +   MV   LGL+ ++ G
Sbjct  441  PWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITG  500

Query  495  TAFAHlglglttlgivgtlCFGTEKILSMHAGETVELSGHTLRFVGLYPAQGPNYSEDRG  554
             AF++               ++ E+ + M+AG++V + +  + F  +    GPNY   RG
Sbjct  501  IAFSQN--------------YSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNY---RG  543

Query  555  RFELIGVS--GSPIGEISSAKRFFPVRQTTTTESGIKTLGLSQLYISLGDEGKDGSVVVR  612
               LIGV+  G P + + + KR++   +   TE++I      +LY +LG+E  +G+  VR
Sbjct  544  GVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVR  603

Query  613  LWWKPLVTLIW  623
            L  KP+V  IW
Sbjct  604  LYYKPFVRWIW  614

611) CGSHiGG_08245 in NC_009567


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  306 bits (1147),  Expect = 3e-84, Method: Compositional matrix adjust.
 Identities = 244/566 (44%), Positives = 386/566 (69%), Gaps = 14/566 (2%)

Query  56   LLAYSFAVDDFTLEYVAAHSNSQLPTFFKVAATWGGHEGSMlfwlfslslwlaafaffNR  115
            +L  +F V+DFT+ YVA++SN+QLP  ++VAATWG+HEGS+L+W++ +S W  A A F+R
Sbjct  56   VLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR  115

Query  116  KNNRTFSAQSLSLLGLICFGFSVFILFYSNPFGRIFPA-PAEGRDLNPMLQDVGLIFHPP  174
            +    + A+ L+++G++C GF  FILF S PF+R +PA P EGRDLNP+LQD GLIFHPP
Sbjct  116  QVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPP  175

Query  175  LLYIGYVGFAVNFAMSLSALIYNQSARQIARSMRGWVLFSWSFLTIGIVLGAWWAYYELG  234
            LLY+GYVGF+V FA +++AL+  +    ++R  R W L +W FLT+GIVLG+ WAYYELG
Sbjct  176  LLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELG  235

Query  235  WGGWWFWDPVENASLMPWllglallhslMATEKQGVFSYWttlfsllafafsVLGTFIVR  294
            WGGWWFWDPVENAS+MPWL G ALLHS+  TE+++ F  WT L+S+ AF++ +LGTF+VR
Sbjct  236  WGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVR  295

Query  295  SGALTSVHAFALDNTRGYvllliffvltvlafGLFALRAGSSSESAVNFQFVSKSGGill  354
            SG L SVHAFA D +RG  +L +  ++T  ++ LFA+R G    S VN  + S+ + +L 
Sbjct  296  SGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVR-GHRVRSRVNNALWSRESLLLG  354

Query  355  lnilltiATVSTFLGTFYPMLFQAMNWGSISVGSPYFNSIFFPIITVILILMVVSLTIRW  414
             N+LL  A +  +LGT+ P++ + +  GSISVG P+FN++F  ++  + +L+ V+  +RW
Sbjct  355  NNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRW  414

Query  415  VQFDRTLLIRCGW-LLIPSLILACLMIWQQLRHNSALNFHAFAFVLLTLAIWLLFVTLWQ  473
             +     + +  W  ++ +L+L+ L+ W  L ++  +   A +   +++A W+  +++ +
Sbjct  415  GRDRPRNIRKLLWAAVVTTLVLSVLLPW--LLEDKIIAMTAVG---MAMACWIAVLAVAE  469

Query  474  NWRQI------RLSQFGMILAHCGVAIVTIGAVMTGYFGSEIGVRLAPQQSQTLGQYEFH  527
              +++       LS  GM+ AH G+A+   G   +  ++ E +VR+ + +S T+ +Y F 
Sbjct  470  AVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  528  YRQFSNEIGPNFTAEVAFFDVTKNGKPYAEIIPERRYYDVRTMTMSEVGLDGGFWGDLYI  587
            +R+  +  GPN+ + VA+++VT++G P A + +E+R Y+   M M+E ++DGG+  DLY 
Sbjct  530  FREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYA  589

Query  588  VMGDSLGKGEFTFRLHYKPLIRWLWA  613
             +G+ L++G  + RL YKP++RW+WA
Sbjct  590  ALGEELDNGAWAVRLYYKPFVRWIWA  615

612) Hden_1131 in NC_014313


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  306 bits (1146),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 291/624 (47%), Positives = 432/624 (70%), Gaps = 11/624 (1%)

Query  1    MIIEFGHFalilallvavvqvvlPMAGASLKDERMMRVAEPAAVSQFILLAIAFVALMHA  60
            M+ E+GH  L LAL VA++  V P+ G +  D RMM  A   A   FI +A AF  L+HA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   YVTSDFSVANVAENSHSTKPLIYKMAGVWGNHEGSMLLWvlilalfgaavalfgTNLPPS  120
            +V +DF+VA VA NS++  P+ Y++A+ WG HEGS+LLWVL+++    AVA+F+ ++P+ 
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRARVLSVQASIAVAFLLFSILTSNPFLRLVPA-PSDGRGLNPILQDPALAFHPPFLYTG  179
            + ARVL+V + +  +FL F ++TS PF R +PA P +GR+LNP+LQDP+L FHPP+LY G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGfsiafsfaiaaLIEGRIDAAWARWVRPWTLAAWMFLTIGISMGSWWAYYELGWGGWW  239
            YVGFS+AF+FAIAAL+ GR+D+A +R  RPWTLAAW+FLT+GI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASFMPWLAGTALLHSALVMEKREALKVWTVLLAILTFSLSLMGTFIVRSGVLT  299
            FWDPVENASFMPWLAGTALLHS  V E+R ++K WT+LL+I +FSL L+GTF+VRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFAVDPARGVfilaililftggglalfalRASEMQTGGIFQPISREGSlvlnnlllv  359
            SVH+FA DPARG+FILA+++L TGG+L LFA+R+  +++       SRE+ L+ NN+LL+
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  tatatvlvgtlYPMALEGLTGEKISVGPPFFDSTFgplmiplllalpigpmlaWKRGDLA  419
            +A   VL+GTL P+    L    ISVG PFF++ F  LM+P+ L L +GP++ W R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  GVMQRLafavlaaiiaivatyavGHRGPWLAPFGIGLGVYVMMGAIAEWASRIKLAQAPV  479
             + + L  AV+++++  V         PWL   +  +++  +  A+A W + + +A+A  
Sbjct  421  NIRKLLWAAVVTTLVLSVLL-------PWLLE-DKIIAMTAVGMAMACWIAVLAVAEA--  470

Query  480  SESFRRARNLPRSAYGTLLAHFGVGMLVVGIIATSAYREEHILVMKPGQTLSVAGYDVKF  539
             +   R+ + + S  G + AH+G+++ + GI  +  Y  E+ + M++G+++++ +Y   F
Sbjct  471  VQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTF  530

Query  540  TGFESGRGPNYREDFADFDVMRSGTSIGRLRPSKRLYDAPPQPTTEAGIHASWRGDLYLV  599
                   GPNYR + A ++V R G + + L++ KRLY+++    TEA+I+++   DLY  
Sbjct  531  REVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAA  590

Query  600  IGDSQPDGGYAVRAYFNPLVRFIW  623
            +G+   +G+ AVR Y++P+VR IW
Sbjct  591  LGEELDNGAWAVRLYYKPFVRWIW  614

613) nrfE in NC_016808


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  306 bits (1145),  Expect = 5e-84, Method: Compositional matrix adjust.
 Identities = 268/576 (47%), Positives = 398/576 (70%), Gaps = 19/576 (3%)

Query  48   IFTCIA--LFCLAYAFALDDFSVQYVAHHSNSQLPIFFKVSATWGGHEGSMlfwlfalal  105
            +F C+A  +F L  AF ++DF+V YVA +SN+QLP+ ++V+ATWG+HEGS+L+W++ ++ 
Sbjct  46   LFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSG  105

Query  106  wlilfafSSRHKDPIICARALSVlglicfgfclfilflSNPFERSFPQ-AFEGRDLNPML  164
            W +  A  SR+  + I AR L+V+G++C GF  FILF S PF R++P  + EGRDLNP+L
Sbjct  106  WTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLL  165

Query  165  QDVGLIFHPPLLYLGYVGFAVNFAITISALVSGHLDAAVARMMRPWVLLSWLFLTLGIVL  224
            QD GLIFHPPLLY+GYVGF+V FA++I+AL+SG+LD+A +R  RPW L +W+FLTLGIVL
Sbjct  166  QDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVL  225

Query  225  GSWWAYYELGWGGWWFWDPVENASLMPWllglallhslSITEQRGIFSYWTllfsllafs  284
            GS WAYYELGWGGWWFWDPVENAS+MPWL G ALLHS+++TEQR+ F  WTLL+S+ AFS
Sbjct  226  GSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFS  285

Query  285  fsllGTFIVRSGVLTSVHAFAVDGDRGIALLILFFLLTVSAFTLFALKVNLPQSAVRFRL  344
            + LLGTF+VRSGVL SVHAFA D  RG+ +L +  L+T +++ LFA++ +  +S V   L
Sbjct  286  LCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNAL  345

Query  345  ISKEnallllnilltiatVSVFLGTFYPIVFTALQWGSISVGAPYFNTIFLPLFVMAMLA  404
             S+E+ LL  N+LL  A + V+LGT+ P+V   L  GSISVG P+FNT+F  L V   L 
Sbjct  346  WSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALL  405

Query  405  MILVLSLRWKTLNKKPFIQRTLL---LFPALILAYGLIRYYVDHNQGLPFNFSAYGLLSL  461
            + +   +RW     +P   R LL   +  +L+L+  L+   ++++    +  +A G +++
Sbjct  406  LGVGPLVRWG--RDRPRNIRKLLWAAVVTTLVLS-VLLPWLLEDKI---IAMTAVG-MAM  458

Query  462  SIWLIL-----ATLWLPW-TQLKLKQLAMVIAHLGVAITAIGAIMSSYYSSEIGVRLAPQ  515
            + W+ +     A  ++++ T+  L   +MV AHLG+A+T  G   S  YS E +VR+ + 
Sbjct  459  ACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAG  518

Query  516  QRQKLGDYEFHYQGFQHVLGPNYTSEKAHFVVTKQNQAYTEIYPERRYYDVRTMNMSEVG  575
            +   + DY F ++  +++ GPNY +  A + VT++ ++ + + +E+R Y+   M M+E +
Sbjct  519  DSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAA  578

Query  576  IDWGWLGDVYIVMGDKLGQGEFTFRLQYKPFIRWLW  611
            ID G   D+Y  +G+ L++G  + RL YKPF+RW+W
Sbjct  579  IDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

614) ccmF in NC_011312


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  305 bits (1144),  Expect = 5e-84, Method: Compositional matrix adjust.
 Identities = 226/561 (41%), Positives = 382/561 (69%), Gaps = 18/561 (3%)

Query  59   YGFYIDDFSIRYIAEHSNSDLPVFFKVAAIWGGHEGSLLFWVLTLTLWAGVITLNRKTIQ  118
             +F ++DF++ Y+A +SN++LPV ++VAA WG+HEGSLL+WVL ++ W+  +++  + + 
Sbjct  59   HAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVP  118

Query  119  TEYVIRVLLVLNALIAIFSAFTLFASNPFIIYVNT-PLEGRDLNPMLQDIGLIFHPPLLY  177
            ++ V RVL V+  + A F AF LF+S PF   + + P+EGRDLNP+LQD GLIFHPPLLY
Sbjct  119  ADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLY  178

Query  178  LGYVGfaatfsfalaalMMKDVPQYWVKHARHWTLLAWSLLTAGISLGSWWAYYELGWGG  237
            +GYVGF+ +F+FA+AAL+   +     + AR WTL AW +LT GI LGS WAYYELGWGG
Sbjct  179  MGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGG  238

Query  238  WWFWDPVENASLLPWLTATGLLHTLIASDKKNQLLKTSMILSLVTFCLSILGTFVVRSGV  297
            WWFWDPVENAS++PWL++T+LLH++  ++++  +   +++LS+ +F L +LGTF+VRSGV
Sbjct  239  WWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGV  298

Query  298  LTSVHAFAVDPTRGiilllilFVVMLASLSLYAFKSRQLNSQPIRHFISRDFLFLLLAGL  357
            L SVHAFA DP+RG+++L ++ +V  +SL L+A +++++ S+    + SR+ L+L    L
Sbjct  299  LVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVL  358

Query  358  FSIATITVLLGTFYPMIFQIFGLGNISVGAPYFNLLFVPMAIVALFMIAVSVFVRWEGKA  417
            +  A + VLLGT+ P++ + +GLG+ISVG P+FN +F  + +   ++++V+ +VRW G+ 
Sbjct  359  LMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRW-GRD  417

Query  418  TNANTKKiv-isslisivlglgiYRVQYENIAVIPSL-----VWVLAFAVVMGSIWSLIQ  471
               N +K++  + + ++VL++ + ++  ++I  + ++      W+  +AV  +  +    
Sbjct  418  RPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG  477

Query  472  SKGKai--gmviahigiaivmigaamNSEHSFESSAKMEPSITAKLADYEITYKETELLV  529
            +K      GMV AH+G+A+ + G A + + S E   +M ++ +  + DY +T++E   + 
Sbjct  478  TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDIT  537

Query  530  ASNYTAEQANLLIRENGKEIAMVQPQRRHYQVRVMNMSEPAMYWFWHG----DIYVTLGE  585
            ++NY +  A + +  +G   A++++++R Y+   M M+E+A+    +G    D+Y +LGE
Sbjct  538  GPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAI----DGGLTRDLYAALGE  593

Query  586  KLKDGSFALRLQYKAYVRWIW  606
             L +G+ A+RL YK++VRWIW
Sbjct  594  ELDNGAWAVRLYYKPFVRWIW  614

615) nfrE in NC_011852


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  305 bits (1143),  Expect = 6e-84, Method: Compositional matrix adjust.
 Identities = 271/644 (43%), Positives = 424/644 (66%), Gaps = 18/644 (2%)

Query  1    MLPELGY--FCLVLLAGISGLQVLCSLWGEIRHQPFWLSGNRLFSLIQallalacfgcla  58
            M+PE G   +CL L  G++ L  + +LWG  R ++  +++  +F+ +  +   + F  L 
Sbjct  1    MMPEYGHALLCLAL--GVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLV  58

Query  59   YGFIYDDFSVAYVAAHSNSQLPTFFKFAATWGGHEGSMLFWLTALALWTGIFCIFSGKID  118
             +F+ +DF+VAYVA++SN+QLP  ++ AATWG+HEGS+L+W+  ++ WT    +FS ++ 
Sbjct  59   HAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVP  118

Query  119  RLFTYRTlaslaliilgfalfillVSNPFERSFPPSP-EGQDLNPMLQDIGLIFHPPLLY  177
              +  R LA ++++  GF  FIL+ S PF R++P+ P EG+DLNP+LQD GLIFHPPLLY
Sbjct  119  ADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLY  178

Query  178  LGYVGFAVTFAMTMAMLLGGVFDYAIARWIRPWTMVAWGFLTAGIMLGAWWAYYELGWGG  237
            +GYVGF+V+FA ++A LL+G +D A++R  RPWT+ AW FLT GI+LG+ WAYYELGWGG
Sbjct  179  MGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGG  238

Query  238  WWFWDPVENASLMPWLLGTALLHSLVVSEQRGIFSYWTillaifafalsllGTFIVRSGV  297
            WWFWDPVENAS+MPWL GTALLHS+ V+EQR+ F  WT+LL+I AF+L LLGTF+VRSGV
Sbjct  239  WWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGV  298

Query  298  LTSVHAFAVDAERGMALLILFFSLSFVALTLFALRVNLWQGNVRFHLFSKETALLLVNGL  357
            L SVHAFA D+ RGM +L +   ++  +L LFA+R +  ++ V   L S+E+ LL  N L
Sbjct  299  LVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVL  358

Query  358  FALATLVVILGTFYPMIFSAMGWGSISVGAPYFNTIFTPLALILLCLMGFAIVLRWKHIP  417
            +  A LVV+LGT+ P++   +G GSISVG P+FNT+FT L + +  L+G + ++RW +  
Sbjct  359  LMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR  418

Query  418  QRQIlwqlallpvavllslGFSyqvlqqvyvhqlqwqPTLFISLAIWVVLTHL--PYQRF  475
             R+I   L    V+ L+   +    L  +  +++    ++ +++A W+ +  +  + QR 
Sbjct  419  PRNIRKLLWAAVVTTLVLSVL----LPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV  474

Query  476  MWQIRPL----AMRLAHIGFAISVIGAMMNSYYADEVGVRLKPTQSAELAGLHFEYVKHH  531
             +  +      +M  AH+G+A+++ G   +  Y+ E +VR+++ +S  + + +F +   +
Sbjct  475  SRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  532  NEIGVNYTAEVAEFHLYDQHHQKLATLLPERRYYDVRTMTMAEVGLAHYGLDDIYIVMGD  591
            +  G NY + VA + +  +H +  A L +E+R Y+   M M+E ++      D+Y  +G+
Sbjct  535  DITGPNYRGGVALIGV-TRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  592  KFGNKEYAFRLHYKPYVRILWLGGAIMVLASLLALVG--YRRKK  633
             ++N   A RL YKP+VR +W GG +M L++LL L +  YRR+K
Sbjct  594  ELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRK  637

616) ccmF in NC_009937


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  304 bits (1140),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 260/563 (47%), Positives = 380/563 (68%), Gaps = 13/563 (2%)

Query  63   TSDFSVANVVENSHSQMPLVYKITSTWGNHEGSMMLWvlvlavfgalvavfgTNLPDRLK  122
             +DF+VA V  NS++Q+P+ Y++++TWG HEGS++LWVL+++     VAVF+ ++P  + 
Sbjct  63   VNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIV  122

Query  123  ANALAVQGaiataflafilltSNPFLRILQP-PAEGRSLNPVLQDPGLAIHPPLLYLGYV  181
            A  LAV G + ++FLAFIL+TS PF R L + P EGR LNP+LQDPGL +HPPLLY+GYV
Sbjct  123  ARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYV  182

Query  182  GLSIAFSFAMAALIEGRIDAAWARWVRPWTLAAWVFLTLGIAMGSYWAYYELGWGGWWFW  241
            G+S+AF+FA+AAL+ GR+D+A +R  RPWTLAAWVFLTLGI +GS WAYYELGWGGWWFW
Sbjct  183  GFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFW  242

Query  242  DPVENASLMPWLAATALLHSAVVMEKRDALKIWTVllailafslsliGTFLVRSGVLTSV  301
            DPVENAS+MPWLA+TALLHS  V E+R ++K WT+LL+I AFSL L+GTFLVRSGVL SV
Sbjct  243  DPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSV  302

Query  302  HAFATDPARGVFILGILTVFIGGSLLLFALRAGELRQGGLFAPVSREGALVMNNLFLTAA  361
            HAFA+DPARG+FIL+++ +  GGSLLLFA+R+  +R     A  SRE+ L+ NN++L AA
Sbjct  303  HAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAA  362

Query  362  TASVFVGTLYPLALEAFTDSKITVGPPFFNLTFGGLMLPLVFAIPFGPLLAWKRGDLLGV  421
               V++GTL PL    +  + I+VG PFFN  F  LM+P+ + +  GPL+ W R+    +
Sbjct  363  MLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNI  422

Query  422  AQRL-TlaaglavvaivvtaaaagggpitpailiglgVFIIAGALTELAERAGVGRVPAR  480
             + L +      V+++++     +      A+ ++++  I   A++E  +R + G   + 
Sbjct  423  RKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTSL  482

Query  481  VAWARFRGVPLSALGTAVAHLGVGVCLIGIVSESAWSLERIASMKVGDTVTIGTRSLTLD  540
              W           G   AHLG++V + GI      S+ER   M+ GD+VTI    +T+ 
Sbjct  483  SYW-----------GMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFR  531

Query  541  RLENRSGPNYAARVAVFDIRSGGTPAGTVETSRRSFEARAMATTESGIRTYGFSQLYVSM  600
             + + +GPNY + VA++++   G P + +++ +R +++  M  TE++I      +LY ++
Sbjct  532  EVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAAL  591

Query  601  GEETPDGHLSIRATWKPLVTLIW  623
            GEE  +G  ++R   KP+V  IW
Sbjct  592  GEELDNGAWAVRLYYKPFVRWIW  614

617) nrfE in NC_002663


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  304 bits (1140),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 269/576 (47%), Positives = 398/576 (70%), Gaps = 19/576 (3%)

Query  48   IFTCIA--LFCLAYAFALDDFSVQYVAHHSNSQLPIFFKVSATWGGHEGSmlfwlfalal  105
            +F C+A  +F L  AF ++DF+V YVA +SN+QLP+ ++V+ATWG+HEGS+L+W++ ++ 
Sbjct  46   LFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSG  105

Query  106  wlmlfafSSRHKDPIICARALSVlglicfgfclfilflSNPFERSFPQ-AFEGRDLNPML  164
            W +  A  SR+  + I AR L+V+G++C GF  FILF S PF R++P  + EGRDLNP+L
Sbjct  106  WTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLL  165

Query  165  QDVGLIFHPPLLYLGYVGFAVNFAITISALVSGHLDAAVARMMRPWVLLSWLFLTLGIVL  224
            QD GLIFHPPLLY+GYVGF+V FA++I+AL+SG+LD+A +R  RPW L +W+FLTLGIVL
Sbjct  166  QDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVL  225

Query  225  GSWWAYYELGWGGWWFWDPVENASLMPWllglallhslSITEQRGIFSYWTllfsllafs  284
            GS WAYYELGWGGWWFWDPVENAS+MPWL G ALLHS+++TEQR+ F  WTLL+S+ AFS
Sbjct  226  GSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFS  285

Query  285  fsllGTFIVRSGVLTSVHAFAVDGDRGIALLILFFLLTVSAFTLFALKVNLPQSAVRFRL  344
            + LLGTF+VRSGVL SVHAFA D  RG+ +L +  L+T +++ LFA++ +  +S V   L
Sbjct  286  LCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNAL  345

Query  345  ISKEnallllnilltiatVSVFLGTFYPIVFTALQWGSISVGAPYFNTIFLPLFVMAMLA  404
             S+E+ LL  N+LL  A + V+LGT+ P+V   L  GSISVG P+FNT+F  L V   L 
Sbjct  346  WSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALL  405

Query  405  MILVLSLRWKTLNKKPFIQRTLL---LFPALILAYGLIRYYVDHNQGLPFNFSAYGLLSL  461
            + +   +RW     +P   R LL   +  +L+L+  L+   ++++    +  +A G +++
Sbjct  406  LGVGPLVRWG--RDRPRNIRKLLWAAVVTTLVLS-VLLPWLLEDKI---IAMTAVG-MAM  458

Query  462  SIWLIL-----ATLWLPW-TQLKLKQLAMVIAHLGVAITAIGAIMSSYYSSEIGVRLAPQ  515
            + W+ +     A  ++++ T+  L   +MV AHLG+A+T  G   S  YS E +VR+ + 
Sbjct  459  ACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAG  518

Query  516  QRQKLGDYEFHYQGFQHVLGPNYTSEKAHFVVTKQNQAYAEIYPERRYYDVRTMNMSEVG  575
            +   + DY F ++  +++ GPNY +  A + VT++ ++ A + +E+R Y+   M M+E +
Sbjct  519  DSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAA  578

Query  576  IDWGWLGDVYIVMGDKLGQGEFTFRLQYKPFIRWLW  611
            ID G   D+Y  +G+ L++G  + RL YKPF+RW+W
Sbjct  579  IDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

618) cycK in NC_005296


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  304 bits (1138),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 284/627 (46%), Positives = 409/627 (66%), Gaps = 17/627 (2%)

Query  1    MIAEAGHYalvlalalalIQSTVPLLGARLNDGALMNVARSTALVQLLFAGLS--FTALV  58
            M++E GH  L LAL++AL+ S  PL G    D+ +M  A +  +  LLF  ++  F  LV
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMM--ASAGVFAWLLFICVAGAFFVLV  58

Query  59   WLHVTSDFSVVNVYENSHSMKPLLYKITGVWGNHEGSMLLWVAILALFGGLVAAFGNNLP  118
               V +DF+V  V  NS++  P+ Y++++ WG HEGS+LLWV +++     VA F+ ++P
Sbjct  59   HAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVP  118

Query  119  LSLRAHVLAVQGWVATAFYLFILITSNPFAR-IANAPAEGRDLNPVLQDIGLAVHPPMLY  177
              + A+VLAV G V ++F  FIL+TS PFAR ++  P EGRDLNP+LQD GL  HPP+LY
Sbjct  119  ADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLY  178

Query  178  LGYVGfsisfsfaaaaLMEGRLDAAWARWVRPWTLVAWIFLTLGIAMGSYWAYYELGWGG  237
            +GYVGFS++F+FA AAL+ GRLD+A +R  RPWTL AW+FLTLGI +GS WAYYELGWGG
Sbjct  179  MGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGG  238

Query  238  WWFWDPVENASLMPWLAGTALLHSALVMEKRNALKVWtillsiltfslsllgtflVRSGV  297
            WWFWDPVENAS+MPWLAGTALLHS  V E+R ++K WT+LLSI +FSL LLGTFLVRSGV
Sbjct  239  WWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGV  298

Query  298  LTSVHAFATDPSRGVFILIILCVFIGGSLTLFAWRASSLKQGGLFAPISREGSLVLNNLF  357
            L SVHAFA+DP+RG+FIL ++ +  GGSL LFA R+  ++     A  SRE+ L+ NN++
Sbjct  299  LVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVL  358

Query  358  LTTACATVFVGTLYPLALEVLTGDKISVGAPFFNLTFGPLMVPLLVAVPFGPLLAWKRGD  417
            L +A   V++GTL PL    L  + ISVG PFFN  F  LMVP+ + +  GPL+ W R+ 
Sbjct  359  LMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR  418

Query  418  LVGAAQRliaagvvallavafvyawvHGGAV-LAPLAIGLAVFVIIGALVDIAERIALFR  476
                 + L AA V +L+   ++   +++  + ++++++++A  + + A+ +  +R++   
Sbjct  419  PRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS---  475

Query  477  GPLSISLRRASGLPRSAWGTMFAHAALGVTLIGIVCETTWNSEYIAAMKPGDSTKLAGYE  536
                    R++  + S WG + AH +L+VT+ GI      + E    M++GDS  + +Y 
Sbjct  476  --------RGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  537  FKFEGANQRQGPNYRELLTQFTVTENGRLVGGMAPSKRSFITRGSSTTEAALLTRGFSQL  596
            F F    +  GPNYR  ++ + VT +G   + + + KR + T     TEAA+      +L
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  597  YISLGDLNDQGAVTVRIYHKPMVLLIW  623
            Y +LG+  D+GA +VR+Y KP V  IW
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIW  614

619) M446_4431 in NC_010511


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  303 bits (1136),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 279/589 (48%), Positives = 389/589 (67%), Gaps = 17/589 (2%)

Query  62   VRSDFSVLNVFENSHSLKPLVYKISGVWGNHEGSMLLWVLILALFGAIVALARDSVPAAL  121
            V +DF+V  V  NS++  P+ Y++++ WG HEGS+LLWVL+++     VA+    VPA +
Sbjct  62   VVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADI  121

Query  122  RANTLGVQATVTFVFLLFILTTSNPFAR-LDPAPAEGRDLNPILQDPGLAIHPPLLYLGY  180
             A  L+V + V   FL FIL TS PFAR L + P EGRDLNP+LQDPGL +HPPLLY+GY
Sbjct  122  VARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGY  181

Query  181  VGFSITFAFAIAALLEGRIDAVWARAVRPWTLLAWCFLTVGIAMGSYWAYYELGWGGWWF  240
            VGFS++FAFAIAALL GR+D+  +R  RPWTL AW FLT+GI +GS WAYYELGWGGWWF
Sbjct  182  VGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWF  241

Query  241  WDPVENASLMPWLAGTALIHSTVVMEKRDALKVWTVllailtfslsllgtflVRSGVLTS  300
            WDPVENAS+MPWLAGTAL+HS  V E+R ++K WT+LL+I +FSL LLGTFLVRSGVL S
Sbjct  242  WDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVS  301

Query  301  VHTFATDPARGTFILAILVLFIGGSLALFAWRAPLLRQGGIFAPISREGALVLNNLFLSA  360
            VH+FA+DPARG FILA++VL  GGSL LFA R+  +R     A  SRE+ L+ NN++L A
Sbjct  302  VHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMA  361

Query  361  ACATVLVGTLYPLVLESLTGEKISVGAPFFNLTFlplavpllllvpFGQTLAWKRGDLGA  420
            A   VL+GTL PLV   L    ISVG PFFN  F  L VP+ LL+  G  + W R D   
Sbjct  362  AMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR-DRPR  420

Query  421  AAQRLLIGVGAGIAATLGMialrrggpaaaplgiglgaYLVVGAAMEIATRAKGRSLGLS  480
              ++LL    A++ +TL +  L         ++       + + +M +A +    +++ +
Sbjct  421  NIRKLLW---AAVVTTLVLSVLLPWLLEDKIIA-------MTAVGMAMACWIAVLAVAEA  470

Query  481  LRRAAGLPRSA---WGTAMAHAGVGLTVIGIA-AQAWSVEALATVPRGGQLTAGPYTATL  536
            ++R +   +++   WG   AH G+++T+ GIA +Q  SVE    +  G+ +T   Y  T+
Sbjct  471  VQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTF  530

Query  537  SGIVPRTGPNYTETVAQLAIRGPDGALVGTLDPGKRFFGARNMAVSEASLLTIGVSQVYA  596
              +   TGPNY   VA +++   +G   + L++ KR++ +  M ++EA++      ++YA
Sbjct  531  REVRDITGPNYRGGVALIGV-TRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYA  589

Query  597  SVGESQADGALGIRLYYKPLVLLIWlgavvmalggglslTDRRFRIGAP  645
            ++GE   +GA ++RLYYKP+V  IW G+++MALGG L L+D R+R   P
Sbjct  590  ALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKP  638

620) NT08PM_1366 in NC_017764


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  303 bits (1137),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 269/576 (47%), Positives = 398/576 (70%), Gaps = 19/576 (3%)

Query  48   IFTCIA--LFCLAYAFALDDFSVQYVAHHSNSQLPIFFKVSATWGGHEGSmlfwlfalal  105
            +F C+A  +F L  AF ++DF+V YVA +SN+QLP+ ++V+ATWG+HEGS+L+W++ ++ 
Sbjct  46   LFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSG  105

Query  106  wlmlfafSSRHKDPIICARALSVlglicfgfclfilflSNPFERSFPQ-AFEGRDLNPML  164
            W +  A  SR+  + I AR L+V+G++C GF  FILF S PF R++P  + EGRDLNP+L
Sbjct  106  WTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLL  165

Query  165  QDVGLIFHPPLLYLGYVGFAVNFAITISALVSGHLDAAVARMMRPWVLLSWLFLTLGIVL  224
            QD GLIFHPPLLY+GYVGF+V FA++I+AL+SG+LD+A +R  RPW L +W+FLTLGIVL
Sbjct  166  QDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVL  225

Query  225  GSWWAYYELGWGGWWFWDPVENASLMPWllglallhslSITEQRGIFSYWTllfsllafs  284
            GS WAYYELGWGGWWFWDPVENAS+MPWL G ALLHS+++TEQR+ F  WTLL+S+ AFS
Sbjct  226  GSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFS  285

Query  285  fsllGTFIVRSGVLTSVHAFAVDGDRGIALLILFFLLTVSAFTLFALKVNLPQSAVRFRL  344
            + LLGTF+VRSGVL SVHAFA D  RG+ +L +  L+T +++ LFA++ +  +S V   L
Sbjct  286  LCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNAL  345

Query  345  ISKEnallllnilltiatVSVFLGTFYPIVFTALQWGSISVGAPYFNTIFLPLFVMAMLA  404
             S+E+ LL  N+LL  A + V+LGT+ P+V   L  GSISVG P+FNT+F  L V   L 
Sbjct  346  WSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALL  405

Query  405  MILVLSLRWKTLNKKPFIQRTLL---LFPALILAYGLIRYYVDHNQGLPFNFSAYGLLSL  461
            + +   +RW     +P   R LL   +  +L+L+  L+   ++++    +  +A G +++
Sbjct  406  LGVGPLVRWG--RDRPRNIRKLLWAAVVTTLVLS-VLLPWLLEDKI---IAMTAVG-MAM  458

Query  462  SIWLIL-----ATLWLPW-TQLKLKQLAMVIAHLGVAITAIGAIMSSYYSSEIGVRLAPQ  515
            + W+ +     A  ++++ T+  L   +MV AHLG+A+T  G   S  YS E +VR+ + 
Sbjct  459  ACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAG  518

Query  516  QRQKLGDYEFHYQGFQHVLGPNYTSEKAHFVVTKQNQAYAEIYPERRYYDVRTMNMSEVG  575
            +   + DY F ++  +++ GPNY +  A + VT++ ++ A + +E+R Y+   M M+E +
Sbjct  519  DSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAA  578

Query  576  IDWGWLGDVYIVMGDKLGQGEFTFRLQYKPFIRWLW  611
            ID G   D+Y  +G+ L++G  + RL YKPF+RW+W
Sbjct  579  IDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

621) nrfE in NC_017027


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  303 bits (1137),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 269/576 (47%), Positives = 398/576 (70%), Gaps = 19/576 (3%)

Query  53   IFTCIA--LFCLAYAFALDDFSVQYVAHHSNSQLPIFFKVSATWGGHEGSmlfwlfalal  110
            +F C+A  +F L  AF ++DF+V YVA +SN+QLP+ ++V+ATWG+HEGS+L+W++ ++ 
Sbjct  46   LFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSG  105

Query  111  wlmlfafSSRHKDPIICARALSVlglicfgfclfilflSNPFERSFPQ-AFEGRDLNPML  169
            W +  A  SR+  + I AR L+V+G++C GF  FILF S PF R++P  + EGRDLNP+L
Sbjct  106  WTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLL  165

Query  170  QDVGLIFHPPLLYLGYVGFAVNFAITISALVSGHLDAAVARMMRPWVLLSWLFLTLGIVL  229
            QD GLIFHPPLLY+GYVGF+V FA++I+AL+SG+LD+A +R  RPW L +W+FLTLGIVL
Sbjct  166  QDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVL  225

Query  230  GSWWAYYELGWGGWWFWDPVENASLMPWllglallhslSITEQRGIFSYWTllfsllafs  289
            GS WAYYELGWGGWWFWDPVENAS+MPWL G ALLHS+++TEQR+ F  WTLL+S+ AFS
Sbjct  226  GSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFS  285

Query  290  fsllGTFIVRSGVLTSVHAFAVDGDRGIALLILFFLLTVSAFTLFALKVNLPQSAVRFRL  349
            + LLGTF+VRSGVL SVHAFA D  RG+ +L +  L+T +++ LFA++ +  +S V   L
Sbjct  286  LCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNAL  345

Query  350  ISKEnallllnilltiatVSVFLGTFYPIVFTGLQWGSISVGAPYFNTIFLPLFVMAMLA  409
             S+E+ LL  N+LL  A + V+LGT+ P+V   L  GSISVG P+FNT+F  L V   L 
Sbjct  346  WSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALL  405

Query  410  MILVLSLRWKTLNKKPFIQRTLL---LFPALILAYGLIRYYVDHNQGLPFNFSAYGLLSL  466
            + +   +RW     +P   R LL   +  +L+L+  L+   ++++    +  +A G +++
Sbjct  406  LGVGPLVRWG--RDRPRNIRKLLWAAVVTTLVLS-VLLPWLLEDKI---IAMTAVG-MAM  458

Query  467  SIWLIL-----ATLWLPW-TQLKLKQLAMVIAHLGVAITAIGAIMSSYYSSEIGVRLAPQ  520
            + W+ +     A  ++++ T+  L   +MV AHLG+A+T  G   S  YS E +VR+ + 
Sbjct  459  ACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAG  518

Query  521  QRQKLGDYEFHYQGFQHVLGPNYTSEKAHFVVTKQNQAYAEIYPERRYYDVRTMNMSEVG  580
            +   + DY F ++  +++ GPNY +  A + VT++ ++ A + +E+R Y+   M M+E +
Sbjct  519  DSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAA  578

Query  581  IDWGWLGDVYIVMGDKLGQGEFTFRLQYKPFIRWLW  616
            ID G   D+Y  +G+ L++G  + RL YKPF+RW+W
Sbjct  579  IDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

622) Rpal_2132 in NC_011004


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  303 bits (1136),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 284/627 (46%), Positives = 409/627 (66%), Gaps = 17/627 (2%)

Query  1    MIAEAGHYalvlalalalIQSTVPLLGARLNDGALMNVARSTALVQLLFAGLS--FTALV  58
            M++E GH  L LAL++AL+ S  PL G    D+ +M  A +  +  LLF  ++  F  LV
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMM--ASAGVFAWLLFICVAGAFFVLV  58

Query  59   WLHVTSDFSVVNVYENSHSMKPLLYKITGVWGNHEGSMLLWVAILALFGGLVAAFGNNLP  118
               V +DF+V  V  NS++  P+ Y++++ WG HEGS+LLWV +++     VA F+ ++P
Sbjct  59   HAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVP  118

Query  119  LSLRAHVLAVQGWVATAFYLFILITSNPFAR-IANAPAEGRDLNPVLQDIGLAVHPPMLY  177
              + A+VLAV G V ++F  FIL+TS PFAR ++  P EGRDLNP+LQD GL  HPP+LY
Sbjct  119  ADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLY  178

Query  178  LGYVGfsisfsfaaaaLMEGRLDAAWARWVRPWTLVAWIFLTLGIAMGSYWAYYELGWGG  237
            +GYVGFS++F+FA AAL+ GRLD+A +R  RPWTL AW+FLTLGI +GS WAYYELGWGG
Sbjct  179  MGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGG  238

Query  238  WWFWDPVENASLMPWLAGTALLHSALVMEKRNALKVWtillsiltfslsllgtflVRSGV  297
            WWFWDPVENAS+MPWLAGTALLHS  V E+R ++K WT+LLSI +FSL LLGTFLVRSGV
Sbjct  239  WWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGV  298

Query  298  LTSVHAFATDPSRGVFILIILCVFIGGSLTLFAWRASSLKQGGLFAPISREGSLVLNNLF  357
            L SVHAFA+DP+RG+FIL ++ +  GGSL LFA R+  ++     A  SRE+ L+ NN++
Sbjct  299  LVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVL  358

Query  358  LTTACATVFVGTLYPLALEVLTGDKISVGAPFFNLTFGPLMVPLLVAVPFGPLLAWKRGD  417
            L +A   V++GTL PL    L  + ISVG PFFN  F  LMVP+ + +  GPL+ W R+ 
Sbjct  359  LMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR  418

Query  418  LVGAAQRliaagvvallavafvyawvHGGAV-LAPLAIGLAVFVIIGALVDIAERIALFR  476
                 + L AA V +L+   ++   +++  + ++++++++A  + + A+ +  +R++   
Sbjct  419  PRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS---  475

Query  477  GPLSISLRRASGLPRSAWGTMFAHAALGVTLIGIVCETTWNSEYIAAMKPGDSTKLAGYE  536
                    R++  + S WG + AH +L+VT+ GI      + E    M++GDS  + +Y 
Sbjct  476  --------RGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  537  FKFEGANQRQGPNYRELLTQFTVTENGRLVGGMAPSKRSFITRGSSTTEAALLTRGFSQL  596
            F F    +  GPNYR  ++ + VT +G   + + + KR + T     TEAA+      +L
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  597  YISLGDLNDQGAVTVRIYHKPMVLLIW  623
            Y +LG+  D+GA +VR+Y KP V  IW
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIW  614

623) F382_10695 in NC_021743


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  302 bits (1132),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 257/615 (42%), Positives = 410/615 (67%), Gaps = 11/615 (1%)

Query  1    MLPELGYFSLLLAAISAIFQVGFALLGEVRKQYHWLALAPLFTYLQAAFTTFSFSTLAYA  60
            M+PE G   L LA   A++   ++L G  R + + +A A +F+ L     + +F  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FLTDDFSVIYVAAHSNSQLPDFFKFAATWGGHEGSMLFWLTALVIWSAVFCKFSQKIDRL  120
            F+ +DF+V YVA++SN+QLP  ++ AATWG+HEGS+L+W+  +  W+     FS+++   
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  FANRTlamlglialgfllfillVsspfergfpp-ppegrDLNPMLQDIGLIFHPPLLYLG  179
            +  R LA++G++  GFL FIL+ S+PF R +P+ P EGRDLNP+LQD GLIFHPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFAVSFAMIVAALVSGGMDAAIMRWLRPWTMISWGFLTAGIILGAWWAYYELGWGGWW  239
            YVGF+V+FA  +AAL+SG +D+A+ R  RPWT+ +W FLT GI+LG+ WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLLGTALVHSLIVSQQRGIFYYWTillaifafalsllGTFIVRSGVLT  299
            FWDPVENAS+MPWL GTAL+HS+ V++QR+ F  WT+LL+I AF+L LLGTF+VRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFAVDPDRGMALLILFFGLSFIALALFAFRANLWQGKVRFNLLSKETAFLLINGLFS  359
            SVHAFA DP RGM +L +   ++  +L LFA R++  +++V   L S+E+ +L  N L+ 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  VAASVVLLGTFYPMIFTVMNWGSISVGAPYFNSVFTPLALLLMIVMGFAVVLGWKQISNK  419
             A  VVLLGT+ P++   +  GSISVG P+FN++FT L + + +++G + ++ W +   +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  QILVKLWLLPIAVGLALGLIYASISQREHFALQPLPTIFISLAIWI-ILTHLPYSQKMWQ  478
            +I   LW  ++   L L+++ + + +   +A+ ++    +++A WI +L+     Q++ +
Sbjct  421  NIRKLLW-AAVVTTLVLSVLLPWLLEDKIIAMTAVG---MAMACWIAVLAVAEAVQRVSR  476

Query  479  IRPL-----AMRLAHIGFAVCVIGAMMNSYYGDEIGVRLKPNQAAELAGYTFKYEDYHDL  533
                     +M  AH+G+AV + G   +  Y+ E +VR+++ ++  + +Y F + + +D+
Sbjct  477  GTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDI  536

Query  534  IGPNYTAEQAVFSISRDEQLLATVTPERRYYDVRTMTMAEVGLFHHNLDDIYIVMGDKFG  593
             GPNY +  A+++++R+ +  A + +E+R Y+   M M+E ++      D+Y  +G+ ++
Sbjct  537  TGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELD  596

Query  594  NLEYAFRLHYKPYVQ  608
            N   A RL YKP+V+
Sbjct  597  NGAWAVRLYYKPFVR  611

624) J450_09615 in NC_021738


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  302 bits (1132),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 257/615 (42%), Positives = 410/615 (67%), Gaps = 11/615 (1%)

Query  1    MLPELGYFSLLLAAISAIFQVGFALLGEVRKQYHWLALAPLFTYLQAAFTTFSFSTLAYA  60
            M+PE G   L LA   A++   ++L G  R + + +A A +F+ L     + +F  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FLTDDFSVIYVAAHSNSQLPDFFKFAATWGGHEGSMLFWLTALVIWSAVFCKFSQKIDRL  120
            F+ +DF+V YVA++SN+QLP  ++ AATWG+HEGS+L+W+  +  W+     FS+++   
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  FANRTlamlglialgfllfillVsspfergfpp-ppegrDLNPMLQDIGLIFHPPLLYLG  179
            +  R LA++G++  GFL FIL+ S+PF R +P+ P EGRDLNP+LQD GLIFHPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFAVSFAMIVAALVSGGMDAAIMRWLRPWTMISWGFLTAGIILGAWWAYYELGWGGWW  239
            YVGF+V+FA  +AAL+SG +D+A+ R  RPWT+ +W FLT GI+LG+ WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLLGTALVHSLIVSQQRGIFYYWTillaifafalsllGTFIVRSGVLT  299
            FWDPVENAS+MPWL GTAL+HS+ V++QR+ F  WT+LL+I AF+L LLGTF+VRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFAVDPDRGMALLILFFGLSFIALALFAFRANLWQGKVRFNLLSKETAFLLINGLFS  359
            SVHAFA DP RGM +L +   ++  +L LFA R++  +++V   L S+E+ +L  N L+ 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  VAASVVLLGTFYPMIFTVMNWGSISVGAPYFNSVFTPLALLLMIVMGFAVVLGWKQISNK  419
             A  VVLLGT+ P++   +  GSISVG P+FN++FT L + + +++G + ++ W +   +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  QILVKLWLLPIAVGLALGLIYASISQREHFALQPLPTIFISLAIWI-ILTHLPYSQKMWQ  478
            +I   LW  ++   L L+++ + + +   +A+ ++    +++A WI +L+     Q++ +
Sbjct  421  NIRKLLW-AAVVTTLVLSVLLPWLLEDKIIAMTAVG---MAMACWIAVLAVAEAVQRVSR  476

Query  479  IRPL-----AMRLAHIGFAVCVIGAMMNSYYGDEIGVRLKPNQAAELAGYTFKYEDYHDL  533
                     +M  AH+G+AV + G   +  Y+ E +VR+++ ++  + +Y F + + +D+
Sbjct  477  GTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDI  536

Query  534  IGPNYTAEQAVFSISRDEQLLATVTPERRYYDVRTMTMAEVGLFHHNLDDIYIVMGDKFG  593
             GPNY +  A+++++R+ +  A + +E+R Y+   M M+E ++      D+Y  +G+ ++
Sbjct  537  TGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELD  596

Query  594  NLEYAFRLHYKPYVQ  608
            N   A RL YKP+V+
Sbjct  597  NGAWAVRLYYKPFVR  611

625) J451_10925 in NC_021739


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  302 bits (1132),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 257/615 (42%), Positives = 410/615 (67%), Gaps = 11/615 (1%)

Query  1    MLPELGYFSLLLAAISAIFQVGFALLGEVRKQYHWLALAPLFTYLQAAFTTFSFSTLAYA  60
            M+PE G   L LA   A++   ++L G  R + + +A A +F+ L     + +F  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FLTDDFSVIYVAAHSNSQLPDFFKFAATWGGHEGSMLFWLTALVIWSAVFCKFSQKIDRL  120
            F+ +DF+V YVA++SN+QLP  ++ AATWG+HEGS+L+W+  +  W+     FS+++   
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  FANRTlamlglialgfllfillVsspfergfpp-ppegrDLNPMLQDIGLIFHPPLLYLG  179
            +  R LA++G++  GFL FIL+ S+PF R +P+ P EGRDLNP+LQD GLIFHPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFAVSFAMIVAALVSGGMDAAIMRWLRPWTMISWGFLTAGIILGAWWAYYELGWGGWW  239
            YVGF+V+FA  +AAL+SG +D+A+ R  RPWT+ +W FLT GI+LG+ WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLLGTALVHSLIVSQQRGIFYYWTillaifafalsllGTFIVRSGVLT  299
            FWDPVENAS+MPWL GTAL+HS+ V++QR+ F  WT+LL+I AF+L LLGTF+VRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFAVDPDRGMALLILFFGLSFIALALFAFRANLWQGKVRFNLLSKETAFLLINGLFS  359
            SVHAFA DP RGM +L +   ++  +L LFA R++  +++V   L S+E+ +L  N L+ 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  VAASVVLLGTFYPMIFTVMNWGSISVGAPYFNSVFTPLALLLMIVMGFAVVLGWKQISNK  419
             A  VVLLGT+ P++   +  GSISVG P+FN++FT L + + +++G + ++ W +   +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  QILVKLWLLPIAVGLALGLIYASISQREHFALQPLPTIFISLAIWI-ILTHLPYSQKMWQ  478
            +I   LW  ++   L L+++ + + +   +A+ ++    +++A WI +L+     Q++ +
Sbjct  421  NIRKLLW-AAVVTTLVLSVLLPWLLEDKIIAMTAVG---MAMACWIAVLAVAEAVQRVSR  476

Query  479  IRPL-----AMRLAHIGFAVCVIGAMMNSYYGDEIGVRLKPNQAAELAGYTFKYEDYHDL  533
                     +M  AH+G+AV + G   +  Y+ E +VR+++ ++  + +Y F + + +D+
Sbjct  477  GTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDI  536

Query  534  IGPNYTAEQAVFSISRDEQLLATVTPERRYYDVRTMTMAEVGLFHHNLDDIYIVMGDKFG  593
             GPNY +  A+++++R+ +  A + +E+R Y+   M M+E ++      D+Y  +G+ ++
Sbjct  537  TGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELD  596

Query  594  NLEYAFRLHYKPYVQ  608
            N   A RL YKP+V+
Sbjct  597  NGAWAVRLYYKPFVR  611

626) nrfE in NC_021082


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  302 bits (1132),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 257/615 (42%), Positives = 410/615 (67%), Gaps = 11/615 (1%)

Query  1    MLPELGYFSLLLAAISAIFQVGFALLGEVRKQYHWLALAPLFTYLQAAFTTFSFSTLAYA  60
            M+PE G   L LA   A++   ++L G  R + + +A A +F+ L     + +F  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FLTDDFSVIYVAAHSNSQLPDFFKFAATWGGHEGSMLFWLTALVIWSAVFCKFSQKIDRL  120
            F+ +DF+V YVA++SN+QLP  ++ AATWG+HEGS+L+W+  +  W+     FS+++   
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  FANRTlamlglialgfllfillVsspfergfpp-ppegrDLNPMLQDIGLIFHPPLLYLG  179
            +  R LA++G++  GFL FIL+ S+PF R +P+ P EGRDLNP+LQD GLIFHPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFAVSFAMIVAALVSGGMDAAIMRWLRPWTMISWGFLTAGIILGAWWAYYELGWGGWW  239
            YVGF+V+FA  +AAL+SG +D+A+ R  RPWT+ +W FLT GI+LG+ WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLLGTALVHSLIVSQQRGIFYYWTillaifafalsllGTFIVRSGVLT  299
            FWDPVENAS+MPWL GTAL+HS+ V++QR+ F  WT+LL+I AF+L LLGTF+VRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFAVDPDRGMALLILFFGLSFIALALFAFRANLWQGKVRFNLLSKETAFLLINGLFS  359
            SVHAFA DP RGM +L +   ++  +L LFA R++  +++V   L S+E+ +L  N L+ 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  VAASVVLLGTFYPMIFTVMNWGSISVGAPYFNSVFTPLALLLMIVMGFAVVLGWKQISNK  419
             A  VVLLGT+ P++   +  GSISVG P+FN++FT L + + +++G + ++ W +   +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  QILVKLWLLPIAVGLALGLIYASISQREHFALQPLPTIFISLAIWI-ILTHLPYSQKMWQ  478
            +I   LW  ++   L L+++ + + +   +A+ ++    +++A WI +L+     Q++ +
Sbjct  421  NIRKLLW-AAVVTTLVLSVLLPWLLEDKIIAMTAVG---MAMACWIAVLAVAEAVQRVSR  476

Query  479  IRPL-----AMRLAHIGFAVCVIGAMMNSYYGDEIGVRLKPNQAAELAGYTFKYEDYHDL  533
                     +M  AH+G+AV + G   +  Y+ E +VR+++ ++  + +Y F + + +D+
Sbjct  477  GTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDI  536

Query  534  IGPNYTAEQAVFSISRDEQLLATVTPERRYYDVRTMTMAEVGLFHHNLDDIYIVMGDKFG  593
             GPNY +  A+++++R+ +  A + +E+R Y+   M M+E ++      D+Y  +G+ ++
Sbjct  537  TGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELD  596

Query  594  NLEYAFRLHYKPYVQ  608
            N   A RL YKP+V+
Sbjct  597  NGAWAVRLYYKPFVR  611

627) D648_5650 in NC_020834


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  302 bits (1132),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 257/615 (42%), Positives = 410/615 (67%), Gaps = 11/615 (1%)

Query  1    MLPELGYFSLLLAAISAIFQVGFALLGEVRKQYHWLALAPLFTYLQAAFTTFSFSTLAYA  60
            M+PE G   L LA   A++   ++L G  R + + +A A +F+ L     + +F  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FLTDDFSVIYVAAHSNSQLPDFFKFAATWGGHEGSMLFWLTALVIWSAVFCKFSQKIDRL  120
            F+ +DF+V YVA++SN+QLP  ++ AATWG+HEGS+L+W+  +  W+     FS+++   
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  FANRTlamlglialgfllfillVsspfergfpp-ppegrDLNPMLQDIGLIFHPPLLYLG  179
            +  R LA++G++  GFL FIL+ S+PF R +P+ P EGRDLNP+LQD GLIFHPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFAVSFAMIVAALVSGGMDAAIMRWLRPWTMISWGFLTAGIILGAWWAYYELGWGGWW  239
            YVGF+V+FA  +AAL+SG +D+A+ R  RPWT+ +W FLT GI+LG+ WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLLGTALVHSLIVSQQRGIFYYWTillaifafalsllGTFIVRSGVLT  299
            FWDPVENAS+MPWL GTAL+HS+ V++QR+ F  WT+LL+I AF+L LLGTF+VRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFAVDPDRGMALLILFFGLSFIALALFAFRANLWQGKVRFNLLSKETAFLLINGLFS  359
            SVHAFA DP RGM +L +   ++  +L LFA R++  +++V   L S+E+ +L  N L+ 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  VAASVVLLGTFYPMIFTVMNWGSISVGAPYFNSVFTPLALLLMIVMGFAVVLGWKQISNK  419
             A  VVLLGT+ P++   +  GSISVG P+FN++FT L + + +++G + ++ W +   +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  QILVKLWLLPIAVGLALGLIYASISQREHFALQPLPTIFISLAIWI-ILTHLPYSQKMWQ  478
            +I   LW  ++   L L+++ + + +   +A+ ++    +++A WI +L+     Q++ +
Sbjct  421  NIRKLLW-AAVVTTLVLSVLLPWLLEDKIIAMTAVG---MAMACWIAVLAVAEAVQRVSR  476

Query  479  IRPL-----AMRLAHIGFAVCVIGAMMNSYYGDEIGVRLKPNQAAELAGYTFKYEDYHDL  533
                     +M  AH+G+AV + G   +  Y+ E +VR+++ ++  + +Y F + + +D+
Sbjct  477  GTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDI  536

Query  534  IGPNYTAEQAVFSISRDEQLLATVTPERRYYDVRTMTMAEVGLFHHNLDDIYIVMGDKFG  593
             GPNY +  A+++++R+ +  A + +E+R Y+   M M+E ++      D+Y  +G+ ++
Sbjct  537  TGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELD  596

Query  594  NLEYAFRLHYKPYVQ  608
            N   A RL YKP+V+
Sbjct  597  NGAWAVRLYYKPFVR  611

628) D650_22470 in NC_020833


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  302 bits (1132),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 257/615 (42%), Positives = 410/615 (67%), Gaps = 11/615 (1%)

Query  1    MLPELGYFSLLLAAISAIFQVGFALLGEVRKQYHWLALAPLFTYLQAAFTTFSFSTLAYA  60
            M+PE G   L LA   A++   ++L G  R + + +A A +F+ L     + +F  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FLTDDFSVIYVAAHSNSQLPDFFKFAATWGGHEGSMLFWLTALVIWSAVFCKFSQKIDRL  120
            F+ +DF+V YVA++SN+QLP  ++ AATWG+HEGS+L+W+  +  W+     FS+++   
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  FANRTlamlglialgfllfillVsspfergfpp-ppegrDLNPMLQDIGLIFHPPLLYLG  179
            +  R LA++G++  GFL FIL+ S+PF R +P+ P EGRDLNP+LQD GLIFHPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFAVSFAMIVAALVSGGMDAAIMRWLRPWTMISWGFLTAGIILGAWWAYYELGWGGWW  239
            YVGF+V+FA  +AAL+SG +D+A+ R  RPWT+ +W FLT GI+LG+ WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLLGTALVHSLIVSQQRGIFYYWTillaifafalsllGTFIVRSGVLT  299
            FWDPVENAS+MPWL GTAL+HS+ V++QR+ F  WT+LL+I AF+L LLGTF+VRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFAVDPDRGMALLILFFGLSFIALALFAFRANLWQGKVRFNLLSKETAFLLINGLFS  359
            SVHAFA DP RGM +L +   ++  +L LFA R++  +++V   L S+E+ +L  N L+ 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  VAASVVLLGTFYPMIFTVMNWGSISVGAPYFNSVFTPLALLLMIVMGFAVVLGWKQISNK  419
             A  VVLLGT+ P++   +  GSISVG P+FN++FT L + + +++G + ++ W +   +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  QILVKLWLLPIAVGLALGLIYASISQREHFALQPLPTIFISLAIWI-ILTHLPYSQKMWQ  478
            +I   LW  ++   L L+++ + + +   +A+ ++    +++A WI +L+     Q++ +
Sbjct  421  NIRKLLW-AAVVTTLVLSVLLPWLLEDKIIAMTAVG---MAMACWIAVLAVAEAVQRVSR  476

Query  479  IRPL-----AMRLAHIGFAVCVIGAMMNSYYGDEIGVRLKPNQAAELAGYTFKYEDYHDL  533
                     +M  AH+G+AV + G   +  Y+ E +VR+++ ++  + +Y F + + +D+
Sbjct  477  GTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDI  536

Query  534  IGPNYTAEQAVFSISRDEQLLATVTPERRYYDVRTMTMAEVGLFHHNLDDIYIVMGDKFG  593
             GPNY +  A+++++R+ +  A + +E+R Y+   M M+E ++      D+Y  +G+ ++
Sbjct  537  TGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELD  596

Query  594  NLEYAFRLHYKPYVQ  608
            N   A RL YKP+V+
Sbjct  597  NGAWAVRLYYKPFVR  611

629) N220_02805 in NC_021883


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  302 bits (1132),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 257/615 (42%), Positives = 410/615 (67%), Gaps = 11/615 (1%)

Query  1    MLPELGYFSLLLAAISAIFQVGFALLGEVRKQYHWLALAPLFTYLQAAFTTFSFSTLAYA  60
            M+PE G   L LA   A++   ++L G  R + + +A A +F+ L     + +F  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FLTDDFSVIYVAAHSNSQLPDFFKFAATWGGHEGSMLFWLTALVIWSAVFCKFSQKIDRL  120
            F+ +DF+V YVA++SN+QLP  ++ AATWG+HEGS+L+W+  +  W+     FS+++   
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  FANRTlamlglialgfllfillVsspfergfpp-ppegrDLNPMLQDIGLIFHPPLLYLG  179
            +  R LA++G++  GFL FIL+ S+PF R +P+ P EGRDLNP+LQD GLIFHPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFAVSFAMIVAALVSGGMDAAIMRWLRPWTMISWGFLTAGIILGAWWAYYELGWGGWW  239
            YVGF+V+FA  +AAL+SG +D+A+ R  RPWT+ +W FLT GI+LG+ WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLLGTALVHSLIVSQQRGIFYYWTillaifafalsllGTFIVRSGVLT  299
            FWDPVENAS+MPWL GTAL+HS+ V++QR+ F  WT+LL+I AF+L LLGTF+VRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFAVDPDRGMALLILFFGLSFIALALFAFRANLWQGKVRFNLLSKETAFLLINGLFS  359
            SVHAFA DP RGM +L +   ++  +L LFA R++  +++V   L S+E+ +L  N L+ 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  VAASVVLLGTFYPMIFTVMNWGSISVGAPYFNSVFTPLALLLMIVMGFAVVLGWKQISNK  419
             A  VVLLGT+ P++   +  GSISVG P+FN++FT L + + +++G + ++ W +   +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  QILVKLWLLPIAVGLALGLIYASISQREHFALQPLPTIFISLAIWI-ILTHLPYSQKMWQ  478
            +I   LW  ++   L L+++ + + +   +A+ ++    +++A WI +L+     Q++ +
Sbjct  421  NIRKLLW-AAVVTTLVLSVLLPWLLEDKIIAMTAVG---MAMACWIAVLAVAEAVQRVSR  476

Query  479  IRPL-----AMRLAHIGFAVCVIGAMMNSYYGDEIGVRLKPNQAAELAGYTFKYEDYHDL  533
                     +M  AH+G+AV + G   +  Y+ E +VR+++ ++  + +Y F + + +D+
Sbjct  477  GTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDI  536

Query  534  IGPNYTAEQAVFSISRDEQLLATVTPERRYYDVRTMTMAEVGLFHHNLDDIYIVMGDKFG  593
             GPNY +  A+++++R+ +  A + +E+R Y+   M M+E ++      D+Y  +G+ ++
Sbjct  537  TGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELD  596

Query  594  NLEYAFRLHYKPYVQ  608
            N   A RL YKP+V+
Sbjct  597  NGAWAVRLYYKPFVR  611

630) Shew_0347 in NC_009092


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  302 bits (1132),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 244/584 (42%), Positives = 376/584 (65%), Gaps = 16/584 (2%)

Query  46   RLKPYQPLFIRLNSLAQVASLFILAYLFLSNDFSVAYVANNSNTQLASLYKLAAVWGGHE  105
            R+ +   +F +L  +   +++F+L   F+ NDF+VAYVA NSNTQL+  Y++AA WG+HE
Sbjct  34   RMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHE  93

Query  106  GSMLFWIGAMGIWS-CVLSLQPNHKDRFFHYLHAVLGAIQAGLIAFLLIGSNPFARLLPG  164
            GS+L+W+  M+ W+  V  +  +    +   + AV+G + AG++AF+L+ S PFAR LP+
Sbjct  94   GSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPA  153

Query  165  IPVEGRDLNPILQDIGLILHPPLLFIGYVGlavcfaaaiaallDNSQPLKQHCRLMRPWA  224
            +PVEGRDLNP+LQD GLI+HPPLL++GYVG++V FA AIAALL          R+ RPW+
Sbjct  154  FPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLD-SAFTRFARPWT  212

Query  225  ILAWAMLTGGNAFGSWWAYNELGWGGWWFWDPVENASFIPWLVATALMHSLILGERRDRF  284
            + AW  LT G  +GS WAY ELGWGGWWFWDPVENASF+PWL +TAL+HS+ + E+R  F
Sbjct  213  LAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGF  272

Query  285  HGTSLFLAILGFSLCLLGTFLVRSGVVQSVHAFAADPLRGGAMLTLFALVSICGFTLLLQ  344
             + +L+L+I +FSLCLLGTFLVRSGV+ SVHAFA+DP RG  +L++  LV+  ++ L+  
Sbjct  273  KAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAV  332

Query  345  RLPSLYRPVNSNMLSRESLMQLGNllllvaaisillGSCYPLLYEVASGQSISVGAPYFN  404
            R   +   VN+ + SRESL+   N+LL+ A + +LLG+  PL+    +  SISVG P+FN
Sbjct  333  RGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFN  392

Query  405  SLFIPLTWLI---CLVMGAAPLMRWQVSNPGMLRQLT-ALAAICLFIGltlntlllKEFA  460
            ++F   TWL+    L++G +PL+RW    P  +R+L  A     L +++ L  LL   + 
Sbjct  393  TMF---TWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKII  449

Query  461  AHFLLG-SFACLWLLGCTGLYLHKRLAAYTGAGDNRRCY-AMSFAHLGVALSILGATCSS  518
            A   +G + AC W+   + L +   +   + +      Y +M  AHLG+A++I G + S 
Sbjct  450  AMTAVGMAMAC-WI---AVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQ  505

Query  519  YFQQEELLRMGPGQGKEVAGYTFIYRATETVSHTSYSALQAKIEVRDRREQHLAYLYPQR  578
             +  E  +RM +G++  + +Y F +R    ++  +Y +  A I V  R+ +  A L +++
Sbjct  506  NYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGV-TRHGEPEAVLHAEK  564

Query  579  QTFNSNAMQISAAGIHRSLFADLYISMGNRLSEEEFLIRISYKP  622
            + +N++ M ++ A+I+ +L  DLY ++G+ L +    +R+ YKP
Sbjct  565  RLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKP  608

631) ELI_03870 in NC_007722


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  302 bits (1130),  Expect = 7e-83, Method: Compositional matrix adjust.
 Identities = 255/567 (45%), Positives = 382/567 (68%), Gaps = 16/567 (2%)

Query  53   SFACLLYLFAITDLSTKLVVANSHVDKPMIFKVTGVWGNHEGSMLLWVTVMA---LAGAL  109
            +F  L+  F + D++   V +NS+ + P+ ++V++ WG HEGS+LLWV +M+   LA A+
Sbjct  53   AFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAV  112

Query  110  IAWLERRLPENTMQATlaaqgfvalgffafllfSSNPFER-LPTPAVSGVGLNPLLQDIG  168
            ++   R++P + +   LA  G V  GF+AF+LF+S PF R LP+ +V G +LNPLLQD G
Sbjct  113  FS---RQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPG  169

Query  169  LAFHPPTLYIGYVGLSVAFSFVVGALVTRQVTPDFARAMRPWVLGAWVFLTLGITAGSYW  228
            L FHPP LY+GYVG+SVAF+F ++AL++ ++ + F+R  RPW L+AWVFLTLGI  GS W
Sbjct  170  LIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAW  229

Query  229  AYYELGWGGYWFWDPVENASLMPWLAATALLHSVGVLAARDALRTWTVMLGVIAFSMSML  288
            AYYELGWGG WFWDPVENAS+MPWLA+TALLHS++V   R ++++WT++L++ AFS+ +L
Sbjct  230  AYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLL  289

Query  289  GTFLVRSGVLTSVHAFAVDPERGAFILALLVLYIGGSLALFALRAGSISEGERFTLASRE  348
            GTFLVRSGVL SVHAFA DP RG FILA++VL  GGSL LFA+R+  +      +L SRE
Sbjct  290  GTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRE  349

Query  349  SALVFNNVMLSAILGVVLLGTLYPLLAEAFN-ARVSVGPPYFNPVSAVFAVPMFLVLAVG  407
            S L+ NNV+L A + VVLLGTL PL+   +  + +SVG P+FN + + + VP  L+L+VG
Sbjct  350  SLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVG  409

Query  408  PLLQWRKDRFSRIKTPVMISgaalvlalvglglfvDMSilaligfalaiglgVASLQPLW  467
            PL++W +DR   I+  +  +  + ++  V L  +++  I+A+ + ++A++  +A L    
Sbjct  410  PLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAV--  467

Query  468  GRNLLRVPTAT------WGMVAAHFGVAVALFGIaseaalteerlaalTPGESVVVGEWM  521
            +  + RV+ +T      WGMVAAH+G+AV++ GIA     + ER   + +G+SV + +  
Sbjct  468  AEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  522  VTLDGVEPRAGPNWTALEARILASYDGGAQRALAPQARTFTEPVQETTESALETRWNGQL  581
             T+  V   +GPN  +  A I  + +G ++  L ++ R +  +    TE+A++     +L
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  582  YATLGNRLPDGRWQLRLWWKPFVTLIW  608
            YA+LG+ L +G W +RL  KPFV  IW
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIW  614

632) RPC_1836 in NC_007925


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  302 bits (1130),  Expect = 7e-83, Method: Compositional matrix adjust.
 Identities = 279/627 (45%), Positives = 413/627 (66%), Gaps = 17/627 (2%)

Query  1    MIAEAGHYALVLALGLALIQASVPVLGARLRDPALMNVARSAALAQLLFVGLS--FTALV  58
            M++E GH  L LALG+AL+ +  P+ G    D+ +M  A ++ +A LLF+ ++  F  LV
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMM--ASAGVFAWLLFICVAGAFFVLV  58

Query  59   YLYVISDFSVANVFENSHSAKPLLYKITGVWGNHEGSMLLWVSILALFGGLVAAFGNNLP  118
              +V++DF+VA V  NS++  P+ Y++++ WG HEGS+LLWV +++     VA F+ ++P
Sbjct  59   HAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVP  118

Query  119  LSLRAHVLAVQAWIATAFYLFILITSNPFLR-LDDPPIEGRDLNPVLQDIGLAIHPPMLY  177
              + A+VLAV + + ++F  FIL+TS PF R L   P+EGRDLNP+LQD GL +HPP+LY
Sbjct  119  ADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLY  178

Query  178  LGYVGFSISFSFAIAALIEGRVDAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGG  237
            +GYVGFS++F+FAIAAL+ GR+D+A +R  RPWTL AW+FLTLGI +GS WAYYELGWGG
Sbjct  179  MGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGG  238

Query  238  WWFWDPVENASLMPWLAGTALLHSAVVMEKRNALKVWtillsiltfslsllgtflVRSGV  297
            WWFWDPVENAS+MPWLAGTALLHS  V E+R ++K WT+LLSI +FSL LLGTFLVRSGV
Sbjct  239  WWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGV  298

Query  298  LTSVHAFATDPTRGVFILLILCVFIGGslslyasrasslKQGGLFAPISREGALVLNNLF  357
            L SVHAFA+DP+RG+FIL ++ +  GGSL L+A R+  ++     A  SRE+ L+ NN++
Sbjct  299  LVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVL  358

Query  358  LTTACATVFIGTLYPLALEVLTGDKISVGAPFFNLTFgplfvplllavpfgpllaWKRGD  417
            L +A   V++GTL PL    L  + ISVG PFFN  F  L VP+ L +  GPL+ W R+ 
Sbjct  359  LMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR  418

Query  418  LIGAAQRl-iaagvaaliaiallWSFVHGGSTLAPLAIGLAVFVIAGALVDLVERIGLFR  476
                 + L  A   + ++++ L W + +   +++++++++A  +   A+ + V+R++   
Sbjct  419  PRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS---  475

Query  477  NPLGIVWRRARGLPRSTWGTAFAHAGVGVALIGIVCETTWNSEYIGTMSAGQSAKLAGYE  536
                    R+   + S WG   AH G++V++ GI      + E    M AG+S  + +Y 
Sbjct  476  --------RGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  537  LKLDGLQSRQGPNFRELLAQFTVTEAGLPIGVMNPSKRAFAARGSSTSEAALLTRGVSQL  596
            + +  ++   GPN+R  +A + VT  G P +V+++ KR + +     +EAA+      +L
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  597  YVSLGEPTADGGIAVRIYHKPMVLLIW  623
            Y +LGE   +G+ AVR+Y KP V  IW
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIW  614

633) R2866_1446 in NC_017451


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  302 bits (1130),  Expect = 7e-83, Method: Compositional matrix adjust.
 Identities = 240/566 (43%), Positives = 385/566 (69%), Gaps = 14/566 (2%)

Query  56   LLAYSFAVDDFTLEYVAAHSNSQLPTFFKMAATWGGHEGSMlfwlfslslwlaafaffNR  115
            +L  +F V+DFT+ YVA++SN+QLP  +++AATWG+HEGS+L+W++ +S W  A A F+R
Sbjct  56   VLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR  115

Query  116  KNDRTFSAQSLSLLGLICFGFAVFILFYSNPFGRIFPA-PAEGRDLNPMLQDVGLIFHPP  174
            +    + A+ L+++G++C GF  FILF S PF+R +PA P EGRDLNP+LQD GLIFHPP
Sbjct  116  QVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPP  175

Query  175  LLYVGYVGFAVNFAMSLSALIYNQSARQIARSMRGWVLVSWLFLTIGIVLGAWWAYYELG  234
            LLY+GYVGF+V FA +++AL+  +    ++R  R W L +W+FLT+GIVLG+ WAYYELG
Sbjct  176  LLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELG  235

Query  235  WGGWWFWDPVENASLMPWllglallhslMATEKQGVFSYWttlfsllafafsVLGTFIVR  294
            WGGWWFWDPVENAS+MPWL G ALLHS+  TE+++ F  WT L+S+ AF++ +LGTF+VR
Sbjct  236  WGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVR  295

Query  295  SGALTSVHAFALDNTRGYVLLLIffvltalafglfalraGSSSESAVKFQFISKSGGill  354
            SG L SVHAFA D +RG +++L F VL + +  L+    G    S V+  + S+ + +L 
Sbjct  296  SGVLVSVHAFASDPARG-MFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLG  354

Query  355  lnilltiATVSTFLGTFYPMLFQAMNWGSISVGSPYFNSIFFPIITAILILMVIVLSIRK  414
             N+LL  A +  +LGT+ P++ + +  GSISVG P+FN++F  ++ ++ +L+ +   +R 
Sbjct  355  NNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRW  414

Query  415  GQFDRTLLIRYGW-LLIPSLILAGLMIWQQLRHNSALNFHAFAFVLLTLAIWLLFVTLWQ  473
            G+     + +  W  ++ +L+L+ L+ W  L ++  +   A +   +++A W+  +++ +
Sbjct  415  GRDRPRNIRKLLWAAVVTTLVLSVLLPW--LLEDKIIAMTAVG---MAMACWIAVLAVAE  469

Query  474  NWRQI------RLSQFGMILAHCGVAIVTIGAVMTGYFGSEIGVRLAPQQSQTLGQYEFH  527
              +++       LS  GM+ AH G+A+   G   +  ++ E +VR+ + +S T+ +Y F 
Sbjct  470  AVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  528  YRQFSNEIGPNFTAEVAFFDVTKNGKPYAKIIPERRYYDVRTMTMSEVGLDGGFWGDLYI  587
            +R+  +  GPN+ + VA+++VT++G P A + +E+R Y+   M M+E ++DGG+  DLY 
Sbjct  530  FREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYA  589

Query  588  VMGDSLGKGEFTFRLHYKPLIRWLWA  613
             +G+ L++G  + RL YKP++RW+WA
Sbjct  590  ALGEELDNGAWAVRLYYKPFVRWIWA  615

634) Plav_0941 in NC_009719


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  301 bits (1128),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 271/591 (46%), Positives = 393/591 (67%), Gaps = 13/591 (2%)

Query  64   SDFSIKLVYDNSHSAKPMIFKVSGVWGNHEGSMVLWVLILSLFGAMVAVFGRNLPDTLRS  123
            +DF++  V +NS++  P+ ++V++ WG HEGS++LWVL++S     VAVF+R++P  + +
Sbjct  64   NDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVA  123

Query  124  RVLAVQASIAVAFLLFIVFTSNPFIR-LDPTPFEGRGLNPLLQDRALAFHPPWLYAGYVG  182
            RVLAV + +  +FL FI+FTS PF R L + P EGR+LNPLLQD +L FHPP LY GYVG
Sbjct  124  RVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVG  183

Query  183  FSMTFSFAVAALMEGRVDAAWARWVRPWTLAAWLSLTIGIAMGSWWAYYTLGWGGFWFWD  242
            FS++F+FA+AAL+ GR+D+A +R  RPWTLAAW+ LT+GI +GS WAYY LGWGG WFWD
Sbjct  184  FSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWD  243

Query  243  PVENASLMPWIAGTALLHSAIVAEKRGALKSWTVllaiiafslsllGTFLVRSGVLTSVH  302
            PVENAS+MPW+AGTALLHS  V+E+R+++K+WT+LL+I AFSL LLGTFLVRSGVL SVH
Sbjct  244  PVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVH  303

Query  303  AFAVDPARGVVILGILIFFVGGSLALYAWRAPLLQAGGIFAPISREGallmnnlllaaat  362
            AFA DPARG+ IL+++++  GGSL L+A R+  +++    A  SRE+ LL NN+LL AA 
Sbjct  304  AFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAM  363

Query  363  aSVFIGTLYPLLLDAVAGQKITVGPPFFNFTFVPIFVPLLCLVPIGPFLSWKRADIrgaa  422
              V++GTL PL+   ++   I+VG PFFN  F  + VP+  L+ +GP++ W R   R   
Sbjct  364  LVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIR  423

Query  423  erl-laaaglafiaclaSFAVMHDGPWLAPFGMALAVWLVAGAVSELAWRTKLFATPLPE  481
              L  A      ++ L +  + +    +++ GMA+A W+   AV+E             +
Sbjct  424  KLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAV-----------Q  472

Query  482  SFARARRLPRAAWGMalahgglgiavagivgitaWRTELITSLAPGESAELSGYTLTLER  541
              +R+ + + + WGM  AH GL+++++GI        E    + +G+S  + +Y +T+  
Sbjct  473  RVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  542  VGMRDGPNFVATVGIVQVEREGRPVATLMPEKRRFPTERQEKTEAAIHTNFISDLYVVLG  601
            V    GPN+ + V+++ V R+G P A L +EKR + T R   TEAAI+  +  DLY  LG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  602  EPAADGKWVVRAYRNTFAPLIWIGGMIMALGGVVSLTDRRLRVGAPVAAKA  652
            E   +G W VR Y + F   IW GG++MALGG++ L+D R R   P++  +
Sbjct  593  EELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPEAG  643

635) YE105_C2525 in NC_015224


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  301 bits (1129),  Expect = 7e-83, Method: Compositional matrix adjust.
 Identities = 253/555 (46%), Positives = 386/555 (70%), Gaps = 13/555 (2%)

Query  61   FVTDDFSVLYVAQHGNSRLPLFYKIAAIWGGHEGSMlfllfalslwsaalallRRHFPLR  120
            FV +DF+V YVA ++N++LP+ Y++AA WG+HEGS+L+ ++ +S W+ A+A++ R+ P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  FLARSLGVMGWllvifsvfilffsNPFARLFPTLG-EGRDLNPMLQDLALIFHPPLLYLG  179
            ++AR L+VMG +   F  FILF S PFAR +P++  EGRDLNP+LQD +LIFHPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YSgfavgfafavaTLLEGKSGQNIARYSRPWILAAWSLLSIGILLGAWWAYSELGWGGWW  239
            Y GF+V+FAFA+A+LL G+ +  ++R++RPW LAAW +L++GI+LG+ WAY ELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLLPWLTSTALLHVLALNERRGLYHQWGILLSLVTFQLCLLGTFIVRSGVLT  299
            FWDPVENAS++PWL++TALLH +A+ E+R+ +  W +LLS+ +F LCLLGTF+VRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFAVDTARGEALLALFGIVTLISLMLFALRIRGNTRAADfslfsletlllaalvlls  359
            SVHAFA D ARG  +LA+  +VT  SL+LFA+R +      + +L S E+LLL+  VLL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  iaavtvliGTLYPLIFSALGLGSLSVGAPYFNltltpfmllllllmGWAPFADWQRSRKT  419
             A + VL+GTL PL+   LGLGS+SVG P+FN  +T +M+ + LL+G +P+  W R R  
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  TRWRLA-VPALLAIPGALLSSGLYQSSWQPEMIPGITLALWVLFAPLFATKIR-------  471
              ++L   + + ++  ++L + L +    +    G+++A W+   ++  +  R       
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  472  ----WRSWLIHGGVAISLLGMLFASYHSVEAGSRMSAGRQVTLAGYQFTYQQTELLVGPN  527
                W     H G+A+++ G+ F+   SVE + RM AG  VT+ +Y+FT+++   + GPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  528  YTSERAHIAVSQNGQPITMLLPERRHYTARETLLIEPAIASGPFADFYAVLGDSLGSGEY  587
            Y +  A I+V+++G+P ++L +E+R Y +   ++ E+AI +G   D+YA LG+ L++G  
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  588  SVRLYHKPMASWIWG  602
            +VRLY KP   WIW+
Sbjct  601  AVRLYYKPFVRWIWA  615

636) HI0936 in NC_000907


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  300 bits (1125),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 242/566 (43%), Positives = 385/566 (69%), Gaps = 14/566 (2%)

Query  56   LLAYSFAVDDFTLEYVAAHSNSQLPTFFKVAATWGGHEGSMlfwlfslslwlaafaffNR  115
            +L  +F V+DFT+ YVA++SN+QLP  ++VAATWG+HEGS+L+W++ +S W  A A F+R
Sbjct  56   VLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR  115

Query  116  KNDRTFSAQSLSLLGLICFGFAVFILFYSNPFGRIFPA-PAEGRDLNPMLQDVGLIFHPP  174
            +    + A+ L+++G++C GF  FILF S PF+R +PA P EGRDLNP+LQD GLIFHPP
Sbjct  116  QVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPP  175

Query  175  LLYVGYVGFAVNFAMSLSALIYNQSARQIARSMRGWVLVSWLFLTIGIVLGAWWAYYELG  234
            LLY+GYVGF+V FA +++AL+  +    ++R  R W L +W+FLT+GIVLG+ WAYYELG
Sbjct  176  LLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELG  235

Query  235  WGGWWFWDPVENASLMPWllglallhslMATEKQGVFSYWttlfsllafafsVLGTFIVR  294
            WGGWWFWDPVENAS+MPWL G ALLHS+  TE+++ F  WT L+S+ AF++ +LGTF+VR
Sbjct  236  WGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVR  295

Query  295  SGALTSVHAFALDNTRGYVLLLIffvltalafglfalraGSSSESAVKFQFISKSGGill  354
            SG L SVHAFA D +RG +++L F VL + +  L+    G    S V+  + S+ + +L 
Sbjct  296  SGVLVSVHAFASDPARG-MFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLG  354

Query  355  lnilltiATVSTFLGTFYPMLFQAMNWGSISVGSPYFNSIFFPIITAILILMVIVLSIRK  414
             N+LL  A +  +LGT+ P++ + +  GSISVG P+FN++F  ++ ++ +L+ +   +R 
Sbjct  355  NNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRW  414

Query  415  GQFDRTLLIRCGW-LLIPSLILAGLMIWQQLRNNSALHFHAFAFVLLTLAIWLLFVTLWQ  473
            G+     + +  W  ++ +L+L+ L+ W  L ++  +   A +   +++A W+  +++ +
Sbjct  415  GRDRPRNIRKLLWAAVVTTLVLSVLLPW--LLEDKIIAMTAVG---MAMACWIAVLAVAE  469

Query  474  NWRQI------RLSQFGMILAHCGVAIVTIGAVMSGYFGSEIGVRLAPQQSQTLGQYEFH  527
              +++       LS  GM+ AH G+A+   G   S  ++ E +VR+ + +S T+ +Y F 
Sbjct  470  AVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  528  YRQFSNEIGPNFTAEVAFFDVTKNGKPYAEIIPERRYYDVRTMTMSEVGLDGGFWGDLYI  587
            +R+  +  GPN+ + VA+++VT++G P A + +E+R Y+   M M+E ++DGG+  DLY 
Sbjct  530  FREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYA  589

Query  588  VMGDSLGKGEFTFRLHYKPLIRWLWA  613
             +G+ L++G  + RL YKP++RW+WA
Sbjct  590  ALGEELDNGAWAVRLYYKPFVRWIWA  615

637) Rpdx1_3581 in NC_014834


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  300 bits (1125),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 285/625 (46%), Positives = 411/625 (66%), Gaps = 13/625 (2%)

Query  1    MIAEAGHYalvlalalalIQSTVPVLGARLNDGGLMNVARSTALVQFVFVAASFGALVWL  60
            M++E GH  L LAL++AL+ S  P+ G    D+ +M  A   A + F+ VA++F  LV  
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   NVTSDFSVVNVYENSHSMKPLLYKITGVWGNHEGSMLLWvailalfgalvaalgSNLPLS  120
             V +DF+V  V  NS++  P+ Y++++ WG HEGS+LLWV +++     VA ++ ++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRAHVLAVQGWIATAFYLFILITSNPFLR-IPNPPMEGRDLNPVLQDIGLALHPPLLYLG  179
            + A+VLAV G + ++F  FIL+TS PF R +P  P+EGRDLNP+LQD GL +HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGfsisfsfaaaaLIEGRLDAAWARWVRPWTLIAWVCLTLGIAMGSYWAYYELGWGGWW  239
            YVGFS++F+FA AAL+ GRLD+A +R  RPWTL AWV LTLGI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLAGIALLHSALVMEKRNALKVWtillsiltfslsllgtflVRSGVLT  299
            FWDPVENAS+MPWLAG ALLHS  V E+R ++K WT+LLSI +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFATDPSRGVFILVILCVFIGGSLTLFAWRASALKQGGLFAPISREGSLVLNNLFLT  359
            SVHAFA+DP+RG+FIL ++ +  GGSL LFA R+  ++     A  SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  TACATVFVGTLYPLALEVLTGDKISVGAPFFNLTFGPLMVPLLVAVPFGPLLAWKRGDLV  419
            +A   V++GTL PL    L  + ISVG PFFN  F  LMVP+ + +  GPL+ W R+   
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  AAAQRliaagvvallavafvyawvHGGAV-LAPLAIGLAVFVIIGALVDIVERIGLFRNP  478
               + L AA V +L+   ++   +++  + ++++++++A  + + A+ + V+R++     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  479  LSISLRRAAGLPRSAWGTMFAHAALGVTLIGIVCESTWNTEYIAAMKPGDSTRLAGYEFK  538
                  R++  + S WG + AH +L+VT+ GI      + E    M++GDS  + +Y F 
Sbjct  476  ------RGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  539  FEGANQRQGPNYRELLTRFTVTEGGRPVGVMTPSKRSFVTRGTSTTEAALLTRGLSQLYV  598
            F    +  GPNYR  ++ + VT  G P +V+ + KR + T     TEAA+      +LY 
Sbjct  530  FREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYA  589

Query  599  SLGDLNDQGAVTVRMYHKPMVLLIW  623
            +LG+  D+GA +VR+Y KP V  IW
Sbjct  590  ALGEELDNGAWAVRLYYKPFVRWIW  614

638) HIBPF13700 in NC_014920


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  300 bits (1124),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 243/570 (43%), Positives = 386/570 (68%), Gaps = 22/570 (3%)

Query  56   LLAYSFAVDDFTLEYVAAHSNSQLPTFFKVAATWGGHEGSMlfwlfslslwlaafaffNR  115
            +L  +F V+DFT+ YVA++SN+QLP  ++VAATWG+HEGS+L+W++ +S W  A A F+R
Sbjct  56   VLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR  115

Query  116  KNDRTFSAQSLSLLGLICFGFAVFILFYSNPFGRIFPA-PAEGRDLNPMLQDVGLIFHPP  174
            +    + A+ L+++G++C GF  FILF S PF+R +PA P EGRDLNP+LQD GLIFHPP
Sbjct  116  QVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPP  175

Query  175  LLYVGYVGFAVNFAMSLSALIYNQSARQIARSMRGWVLVSWLFLTIGIVLGAWWAYYELG  234
            LLY+GYVGF+V FA +++AL+  +    ++R  R W L +W+FLT+GIVLG+ WAYYELG
Sbjct  176  LLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELG  235

Query  235  WGGWWFWDPVENASLMPWllglallhslMATEKQGVFSYWttlfsllafafsVLGTFIVR  294
            WGGWWFWDPVENAS+MPWL G ALLHS+  TE+++ F  WT L+S+ AF++ +LGTF+VR
Sbjct  236  WGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVR  295

Query  295  SGALTSVHAFALDNTRGYVLLLIffvltalafglfalraGSSSESAVKFQFVSKSGGill  354
            SG L SVHAFA D +RG +++L F VL + +  L+    G    S V+  + S+ + +L 
Sbjct  296  SGVLVSVHAFASDPARG-MFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLG  354

Query  355  lnilltiATVSTFLGTFYPMLFQAMNWGSISVGSPYFNSIFFPIITAILILMVIVLSIR-  413
             N+LL  A +  +LGT+ P++ + +  GSISVG P+FN++F  ++ ++ +L+ +   +R 
Sbjct  355  NNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRW  414

Query  414  ---KEQFDRTLLIRCGW-LLIPSLILACLMIWQQLRHNSALNFHAFAFVLLTLAIWLLFV  469
               + +  R LL    W  ++ +L+L+ L+ W  L ++  +   A +   +++A W+  +
Sbjct  415  GRDRPRNIRKLL----WAAVVTTLVLSVLLPW--LLEDKIIAMTAVG---MAMACWIAVL  465

Query  470  TLWQNWRQI------RLSQFGMILAHCGVAIVTIGAVMTGYFGSEIGVRLAPQQSQTLGQ  523
            ++ +  +++       LS  GM+ AH G+A+   G   +  ++ E +VR+ + +S T+ +
Sbjct  466  AVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHD  525

Query  524  YEFHYRQFSNEIGPNFTAEVAFFDVTKNGKPYAEIIPERRYYDVRTMTMSEVGLDGGFWG  583
            Y F +R+  +  GPN+ + VA+++VT++G P A + +E+R Y+   M M+E ++DGG+  
Sbjct  526  YRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTR  585

Query  584  DLYIVMGDSLGKGEFTFRLHYKPLIRWLWA  613
            DLY  +G+ L++G  + RL YKP++RW+WA
Sbjct  586  DLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

639) CGSHiEE_07285 in NC_009566


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  300 bits (1123),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 240/566 (43%), Positives = 385/566 (69%), Gaps = 14/566 (2%)

Query  56   LLAYSFAVDDFTLEYVAAHSNSQLPTFFKMAATWGGHEGSMlfwlfslslwlaafaffNR  115
            +L  +F V+DFT+ YVA++SN+QLP  +++AATWG+HEGS+L+W++ +S W  A A F+R
Sbjct  56   VLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR  115

Query  116  KNDRTFSAQSLSLLGLICFGFAVFILFYSNPFGRIFPA-PAEGRDLNPMLQDVGLIFHPP  174
            +    + A+ L+++G++C GF  FILF S PF+R +PA P EGRDLNP+LQD GLIFHPP
Sbjct  116  QVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPP  175

Query  175  LLYVGYVGFAVNFAMSLSALIYNQSARQIARSMRGWVLVSWLFLTIGIVLGAWWAYYELG  234
            LLY+GYVGF+V FA +++AL+  +    ++R  R W L +W+FLT+GIVLG+ WAYYELG
Sbjct  176  LLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELG  235

Query  235  WGGWWFWDPVENASLMPWllglallhslMATEKQGVFSYWttlfsllafafsVLGTFIVR  294
            WGGWWFWDPVENAS+MPWL G ALLHS+  TE+++ F  WT L+S+ AF++ +LGTF+VR
Sbjct  236  WGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVR  295

Query  295  SGALTSVHAFALDNTRGYVLLLIffvltalafglfalraGSSSESAVKFQFISKSGGill  354
            SG L SVHAFA D +RG +++L F VL + +  L+    G    S V+  + S+ + +L 
Sbjct  296  SGVLVSVHAFASDPARG-MFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLG  354

Query  355  lnilltiATVSTFLGTFYPMLFQAMNWGSISVGSPYFNSIFFPIITAILILMVIVLSIRK  414
             N+LL  A +  +LGT+ P++ + +  GSISVG P+FN++F  ++ ++ +L+ +   +R 
Sbjct  355  NNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRW  414

Query  415  GQFDRTLLIRCGW-LLIPSLILAGLMIWQQLRHNSALNFHAFAFVLLTLAVWLLFVTLWQ  473
            G+     + +  W  ++ +L+L+ L+ W  L ++  +   A +   +++A W+  +++ +
Sbjct  415  GRDRPRNIRKLLWAAVVTTLVLSVLLPW--LLEDKIIAMTAVG---MAMACWIAVLAVAE  469

Query  474  NWRQI------RLSQFGMILAHCGVAIVTIGAVMSGYFGSEIGVRLAPQQSQTLGQYEFH  527
              +++       LS  GM+ AH G+A+   G   S  ++ E +VR+ + +S T+ +Y F 
Sbjct  470  AVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  528  YRQFSNEIGPNFTAEIAFFDVTKNGKPYAEIIPERRYYDVRTMTMSEVGLDGGFWGDLYI  587
            +R+  +  GPN+ + +A+++VT++G P A + +E+R Y+   M M+E ++DGG+  DLY 
Sbjct  530  FREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYA  589

Query  588  VMGDSLGKGEFTFRLHYKPLIRWLWA  613
             +G+ L++G  + RL YKP++RW+WA
Sbjct  590  ALGEELDNGAWAVRLYYKPFVRWIWA  615

640) Hbal_1274 in NC_012982


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  299 bits (1122),  Expect = 3e-82, Method: Compositional matrix adjust.
 Identities = 231/567 (41%), Positives = 374/567 (66%), Gaps = 17/567 (2%)

Query  45   AFFTLVRAFLGSDFSLELVVKHSHSLKPTFYKFAGTWGNHEGSMLLWCMIMLGFGAAAVG  104
            AFF LV+AF+ +DF++  V  +S++  P  Y+ A+TWG HEGS+LLW ++M G   A   
Sbjct  53   AFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAV  112

Query  105  LMK--PSALKTKAIGVQGGLSFLSLTYLLFASSPFTRLDPA-PFDGTGLNPLLQDPALAF  161
            + +  P+ + ++ ++V G +    L+++LF+S+PF+R  PA P +G +LNPLLQDP+L F
Sbjct  113  FSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIF  172

Query  162  HPPFLYLGYVGFSFVFSLAAAGLLLNEVGASWAKRARPWALFAWSGLTIGISLGAIWAYY  221
            HPP+LY+GYVGFS  F++A A+LL   ++++ ++ ARPW+L AW  LT+GI LG+ WAYY
Sbjct  173  HPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYY  232

Query  222  ELGWGGWWFWDPVENASLMPWLVGAALVHSIIVTQKRGSMASWTVFLSVLTFCLSILGAF  281
            ELGWGGWWFWDPVENAS+MPWL G+AL+HS+ VT++R++  +WT++LS+ +F L +LG+F
Sbjct  233  ELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTF  292

Query  282  LVRSGVLTSVHAFALDPErgrllliglllVSGFAFSLFAWRGPGLKSGSEFDPVSREGAL  341
            LVRSGVL SVHAFA DP RG ++L  ++LV+G ++ LFA RG  ++S  +    SRE+ L
Sbjct  293  LVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLL  352

Query  342  ILNNLFLSVAAATVLVGTLYPLAMEVVTGEKLSVGTPYFDLTLAPLMGILFLAPPFAQAM  401
            + NN++L  A   VL+GTL PL    +    +SVG P+F+  ++ LM  + L    +  +
Sbjct  353  LGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLV  412

Query  402  TWRAADMSPVVKRLIVagaiaiaagaaTFV-FFSGKLWAV--FGVAVGVWLIGGTITDLI  458
             W + D +  +++L+ A+ ++    +  +  ++ +K+ A+   G+A++ W+   ++++ +
Sbjct  413  RW-GRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAV  471

Query  459  KRVGAGGLTRVFKLPLGVWGLTIAHIGLGLFVIGAVVETNGRIERTFAVTQGQVVELGDW  518
            +RV+ G      K +L+ WG+  AH+GL++ + G     N  +ER   +  G+ V + D 
Sbjct  472  QRVSRGT-----KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  519  SFTFNGVVNSEGPNFYSDRASIMAV--NGKRETELNPEKRYYPASGMPTTEVAIRKSLVG  576
             FTF  V +  GPN Y +  ++++V  +G  E+ L++EKR Y +S M  TE AI  +L  
Sbjct  527  RFTFREVRDITGPN-YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTR  585

Query  577  DLYVALGDPVRGELNGWTIRISINPMI  603
            DLY ALG+ +  +  +W++R+  +P +
Sbjct  586  DLYAALGEEL--DNGAWAVRLYYKPFV  610

641) Msil_0438 in NC_011666


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  299 bits (1120),  Expect = 4e-82, Method: Compositional matrix adjust.
 Identities = 267/607 (44%), Positives = 394/607 (65%), Gaps = 17/607 (2%)

Query  21   SVLPIWGSLAGDRRLMAVAPPVAIMSFLLIGYSYFALTYAHVTSDFSLLNVVENSHSAKP  80
            SV P+WG   GD R+MA A   A + F+ ++ ++F L  A V +DF++  V  NS++  P
Sbjct  21   SVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLP  80

Query  81   LIYKISGVWGNHEGSMllwvlvlalfgaavalFSSSMPEDLRANTLAVQSWISAAFVLFI  140
            + Y++++ WG HEGS+LLWVL+++    AVA+FS  +P D+ A  LAV + + A+F+ FI
Sbjct  81   VWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFI  140

Query  141  LLTSNPFAR-LGAPPAEGNDLNPLLQDPGLAIHPPLLYLGYVGLSITYSFAAAALICGRI  199
            L+TS PFAR L A P EG DLNPLLQDPGL +HPPLLY+GYVG+S++++FA AAL+ GR+
Sbjct  141  LFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRL  200

Query  200  DAVFARFVRPWTLAAWICLTLGIAMGSYWAYYTLGWGGFWFWDPVENASLMPWLAATALL  259
            D+ F+RF RPWTLAAW+ LTLGI +GS WAYY LGWGG WFWDPVENAS+MPWLA+TALL
Sbjct  201  DSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALL  260

Query  260  HCTSVMEKREALKIWTIFLAILAFSLSLVGTFLVRSGVLTSVHAFATDPMRgvfillilv  319
            H  +V E+R ++K WT++L+I AFSL L+GTFLVRSGVL SVHAFA+DP RG+FIL ++V
Sbjct  261  HSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMV  320

Query  320  lfiggslvlfAARAGGLKQGGLFAPISREGAIVVNNLILSTCCATVFVGTLYPLALEAMT  379
            L  GGSL+LFA R+  ++     A  SRE+ ++ NN++L +    V++GTL PL    + 
Sbjct  321  LVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLG  380

Query  380  GEKISVGAPFFNLTFVPLFVPLFILMPVGQMLAWKRGDLLGAAQRLIYafgagllmaaal  439
               ISVG PFFN  F  L VP+ +L+ VG ++ W R D     ++L+ A     L+ + L
Sbjct  381  LGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR-DRPRNIRKLLWAAVVTTLVLSVL  439

Query  440  aaihggpaVSFILG---GLAAYVIVGAFTDIGRRLISAGASPALMLRRLSGLPRQAFGTA  496
             +      +  + +   ++A  + V A ++  +R +S G+  +L  + + +         
Sbjct  440  LPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQR-VSRGTKTSLSYWGMVA---------  489

Query  497  FAHAGIGVTLLGLA-ASGWGVEKITTLRPGDSLDVGPFQLTLQEIAKREGPNYSEIFATT  555
             AH G++VT+ G+A +   +VE+   +R+GDS+ +  +++T++E+    GPNY    A  
Sbjct  490  -AHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALI  548

Query  556  VIRSGGVVAAVVEPSLRSYPTRRSNRTEAGIATLSLGQVYISIGGLEPDGRVDARIFWKP  615
             +   G   AV+++  R Y T R   TEA+I      ++Y ++G    +G    R++ KP
Sbjct  549  GVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKP  608

Query  616  LVSLIWG  622
            +V  IW+
Sbjct  609  FVRWIWA  615

642) HICON_04640 in NC_014922


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  299 bits (1119),  Expect = 5e-82, Method: Compositional matrix adjust.
 Identities = 242/570 (43%), Positives = 386/570 (68%), Gaps = 22/570 (3%)

Query  56   LLAYSFAVDDFTLEYVAAHSNSQLPTFFKVAATWGGHEGSMlfwlfslslwlaafaffNR  115
            +L  +F V+DFT+ YVA++SN+QLP  ++VAATWG+HEGS+L+W++ +S W  A A F+R
Sbjct  56   VLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR  115

Query  116  KNDRTFSAQSLSLLGLICFGFAVFILFYSNPFGRIFPA-PAEGRDLNPMLQDVGLIFHPP  174
            +    + A+ L+++G++C GF  FILF S PF+R +PA P EGRDLNP+LQD GLIFHPP
Sbjct  116  QVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPP  175

Query  175  LLYVGYVGFAVNFAMSLSALIYNQSARQIARSMRGWVLVSWLFLTIGIVLGAWWAYYELG  234
            LLY+GYVGF+V FA +++AL+  +    ++R  R W L +W+FLT+GIVLG+ WAYYELG
Sbjct  176  LLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELG  235

Query  235  WGGWWFWDPVENASLMPWllglallhslMATEKQGVFSYWttlfsllafafsVLGTFIVR  294
            WGGWWFWDPVENAS+MPWL G ALLHS+  TE+++ F  WT L+S+ AF++ +LGTF+VR
Sbjct  236  WGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVR  295

Query  295  SGALTSVHAFALDNTRGYVLLLIffvltalafglfalraGSSSESAVKFQFVSKSGGill  354
            SG L SVHAFA D +RG +++L F VL + +  L+    G    S V+  + S+ + +L 
Sbjct  296  SGVLVSVHAFASDPARG-MFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLG  354

Query  355  lnilltiATVSTFLGTFYPMLFQAMNWGSISVGSPYFNSIFFPIITAILILMVIVLSIR-  413
             N+LL  A +  +LGT+ P++ + +  GSISVG P+FN++F  ++ ++ +L+ +   +R 
Sbjct  355  NNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRW  414

Query  414  ---KEQFDRTLLIRCGW-LLIPSLILACLMIWQQLRHNSALNFHAFAFVLLTLAIWLLFV  469
               + +  R LL    W  ++ +L+L+ L+ W  L ++  +   A +   +++A W+  +
Sbjct  415  GRDRPRNIRKLL----WAAVVTTLVLSVLLPW--LLEDKIIAMTAVG---MAMACWIAVL  465

Query  470  TLWQNWRQI------RLSQFGMILAHCGVAIVTIGAVMTGYFGSEIGVRLAPQQSQTLGQ  523
            ++ +  +++       LS  GM+ AH G+A+   G   +  ++ E +VR+ + +S T+ +
Sbjct  466  AVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHD  525

Query  524  YEFHYRQFSNEIGPNFTAEVAFFDVTKNGKPYAEIIPERRYYDVRTMTISEVGLDGGFWG  583
            Y F +R+  +  GPN+ + VA+++VT++G P A + +E+R Y+   M ++E ++DGG+  
Sbjct  526  YRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTR  585

Query  584  DLYIVMGDSLGKGEFTFRLHYKPLIRWLWA  613
            DLY  +G+ L++G  + RL YKP++RW+WA
Sbjct  586  DLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

643) Y11_04841 in NC_017564


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  298 bits (1118),  Expect = 5e-82, Method: Compositional matrix adjust.
 Identities = 252/555 (46%), Positives = 384/555 (70%), Gaps = 13/555 (2%)

Query  61   FVTDDFSVLYVAQHGNSRLPLFYKIAAIWGGHEGSMlfllfalslwsaalallRRHFPLR  120
            FV +DF+V YVA ++N++LP+ Y++AA WG+HEGS+L+ ++ +S W+ A+A++ R+ P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  FLARSLGVMGWllvifsvfilffsNPFARLFPTLG-EGRDLNPMLQDLALIFHPPLLYLG  179
            ++AR L+VMG +   F  FILF S PFAR +P++  EGRDLNP+LQD +LIFHPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YSgfavgfafavaTLLEGKSGQNIARYSRPWILAAWSLLSIGILLGAWWAYSELGWGGWW  239
            Y GF+V+FAFA+A+LL G+ +  ++R++RPW LAAW +L++GI+LG+ WAY ELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLLPWLTSTALLHVLALNERRGLYHQWGILLSLVTFQLCLLGTFIVRSGVLT  299
            FWDPVENAS++PWL++TALLH +A+ E+R+ +  W +LLS+ +F LCLLGTF+VRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFAVDTARGEALLALFGIVTLISLMLFALRIRGNTRAADfslfsletlllaalvlls  359
            SVHAFA D ARG  +LA+  +VT  SL+LFA+R +      + +L S E+LLL+  VLL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  iaavtvliGTLYPLIFSALGLGSLSVGASYFNltltpfmllllllmGWAPFADWQRSRKT  419
             A + VL+GTL PL+   LGLGS+SVG ++FN  +T +M+ + LL+G +P+  W R R  
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  TRWRLA-VPALLAIPGALLSSGLYQSSWQPEMIPGITLALWVLFAPLFATKIR-------  471
              ++L   + + ++  ++L + L +    +    G+++A W+   ++  +  R       
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  472  ----WRSWLIHGGVAISLLGMLFASYHSVEAGSRMSAGRQVTLAGYQFTYQKTELLVGPN  527
                W     H G+A+++ G+ F+   SVE + RM AG  VT+ +Y+FT++    + GPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  528  YTSERAHITVSQNGQPITMLLPERRHYTARETLLIEPAIASGPFADFYAVLGDSLGSGEY  587
            Y +  A I V+++G+P ++L +E+R Y +   ++ E+AI +G   D+YA LG+ L++G  
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  588  SVRLYHKPMASWIWG  602
            +VRLY KP   WIW+
Sbjct  601  AVRLYYKPFVRWIWA  615

644) nrfE in NC_007146


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  297 bits (1113),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 239/561 (43%), Positives = 375/561 (67%), Gaps = 4/561 (0%)

Query  56   LLTYSFAVDDFTLEYVAAHSNSQLPTFFKVAATWGGHEGSMlfwlfslslwlaafaffNR  115
            +L  +F V+DFT+ YVA++SN+QLP  ++VAATWG+HEGS+L+W++ +S W  A A F+R
Sbjct  56   VLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR  115

Query  116  KNDRTFSAQSLSLLGLICFGFAVFILFYSNPFGRIFPA-PAEGRDLNPMLQDVGLIFHPP  174
            +    + A+ L+++G++C GF  FILF S PF+R +PA P EGRDLNP+LQD GLIFHPP
Sbjct  116  QVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPP  175

Query  175  LLYVGYVGFAVNFAMSLSALIYNQSARQIARSMRGWVLVSWLFLTIGIVLGAWWAYYELG  234
            LLY+GYVGF+V FA +++AL+  +    ++R  R W L +W+FLT+GIVLG+ WAYYELG
Sbjct  176  LLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELG  235

Query  235  WGGWWFWDPVENASLMPWllglallhslMATEKQGVFSYWttlfsllafafsVLGTFIVR  294
            WGGWWFWDPVENAS+MPWL G ALLHS+  TE+++ F  WT L+S+ AF++ +LGTF+VR
Sbjct  236  WGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVR  295

Query  295  SGALTSVHAFALDNTRGYVLLLIffvltalafglfalraGSSSESAVKFQFISKSGGill  354
            SG L SVHAFA D +RG +++L F VL + +  L+    G    S V+  + S+ + +L 
Sbjct  296  SGVLVSVHAFASDPARG-MFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLG  354

Query  355  lnilltiATVSTFLGTFYPMLFQAMNWGSISVGSPYFNSIFFPIITAILILMVIVLSIRK  414
             N+LL  A +  +LGT+ P++ + +  GSISVG P+FN++F  ++ ++ +L+ +   +R 
Sbjct  355  NNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRW  414

Query  415  GQFDRTLLIRCGW-LLIPSLILAGLMIWQQLRHNSALNFHAFAFvlltlaiwlllvtlwQ  473
            G+     + +  W  ++ +L+L+ L+ W       A+   + A       + +     + 
Sbjct  415  GRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV  474

Query  474  NW-RQIRLSQFGMILAHCGVAIVTIGAVMSGYFGSEIGVRLAPQQSQTLGQYEFHYRQFS  532
            ++  +  LS  GM+ AH G+A+   G   S  ++ E +VR+ + +S T+ +Y F +R+  
Sbjct  475  SRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  533  NEIGPNFTAEVAFFDVTENGKPYAEIIPERRYYDVRTMTMSEVGLNGGFWGDLYIVMGDS  592
            +  GPN+ + VA+++VT +G P A + +E+R Y+   M M+E +++GG+  DLY  +G+ 
Sbjct  535  DITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  593  LGKGEFTFRLHYKPLIRWLWA  613
            L++G  + RL YKP++RW+WA
Sbjct  595  LDNGAWAVRLYYKPFVRWIWA  615

645) B565_1692 in NC_015424


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  296 bits (1110),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 252/563 (45%), Positives = 379/563 (68%), Gaps = 19/563 (3%)

Query  61   FGQDDFTVSYVAQHANSALPLGFKLAAVWGGHEGSMLFFVFALGLWGALVALCSRRVDPL  120
            F  +DFTV+YVA ++N+ LP+ +++AA WG+HEGS+L+ V+ ++ W   VA+ SR+V + 
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  ITTRVLAIMGLIVGLFALYTLIFSSPFDRQFPG-PLEGRDLNPMLQDIGLIIHPPLLYLG  179
            I +RVLA+MG++ + F  + L+ S+PF R +P+ P+EGRDLNP+LQD GLI+HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFAVNFAFAMAALHSGRLDGAVAHWSRPWALGSWVFLTAGIVLGSWWAYYELGWGGWW  239
            YVGF+V FAFA+AAL SGRLD+A ++ +RPW+L++WVFLT GIVLGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLLPWLLGTALLHALIVCEKRGAYGHAVLLLSIFTFALSLLGTFVVRSGVLT  299
            FWDPVENAS++PWL GTALLH++ V E+R+++    LLLSI +F+L LLGTF+VRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFAVDPsrgltlllllgllltsaltlfalraDIRAPYARFGLLSKEgllgaailllc  359
            SVHAFA DP+RG+ +L ++ L+  ++L LFA+R++   +    +L S+E+LL +  +LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  vacasvllgTFYPMVFQSLHLGSLSVGAPYFNTIFVPLALCLMALMTQLPRLRWQQLAPH  419
             A   VLLGT+ P+V + L LGS+SVG P+FNT+F  L + +  L+   P +RW +  P+
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  SRlnallpplfgllgggl--------islaylEQGSFVGSWIGILANMVslwliaslllp  471
            +  + L +++   L  ++          +A    G  ++ WI++LA          +  +
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLA----------VAEA  470

Query  472  llqptslrelTLNRLGSLLAHLGVAVCALGIAQVSDHSQEGGTVLGANQPYQLGAFEFRY  531
            + + +     +L+  G + AHLG+AV   GIA   + S E +  + A ++  +  + F +
Sbjct  471  VQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTF  530

Query  532  EGREPVIGPNYTAERITLSVHKNGKEVARLTPERRHYSVRTMNMNEPGIAWGMFGDLYVV  591
                 + GPNY +    ++V ++G   A L +E+R Y+   M M E++I  G+  DLY  
Sbjct  531  REVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAA  590

Query  592  LGEKMGPDAYAMRLHYKPLVRWI  614
            LGE ++ +A A+RL YKP+VRWI
Sbjct  591  LGEELDNGAWAVRLYYKPFVRWI  613

646) Snov_0730 in NC_014217


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  296 bits (1110),  Expect = 3e-81, Method: Compositional matrix adjust.
 Identities = 282/626 (46%), Positives = 416/626 (67%), Gaps = 15/626 (2%)

Query  1    MNPEIGHYalvlalaiailQTVLPIWGARTGDAALMRVGPalaiafagfialafatltaa  60
            M PE GH  L LAL++A+L +V P+WG   GDA +M  +  +A  +   +A AF  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   YVQSDFSVLNVVENSHSMKPLLFRITGVWGNHEGSMllwvlvlavfgalvalfgSNLPAS  120
            +V +DF+V  V  NS++  P+ +R+++ WG HEGS+LLWVL+++     VA+F+ ++PA 
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LKANVLGVQASIAVAFLLFILLTSNPFIRVVPP-PAEGQDLNPILQDIGLAIHPPLLYLG  179
            + A VL+V + +  +FL FIL+TS PF R +P+ P EG+DLNP+LQD GL +HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSITFAFAVAALIEGRIDAAWARWVRPWALTAWAFLTLGIAMGSYWAYYELGWGGWW  239
            YVGFS++FAFA+AAL+ GR+D+A +R  RPW+L+AW FLTLGI +GS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWFAGTALIHSAVVMEKRDALKVWTillailafslsllGTFLVRSGVLT  299
            FWDPVENAS+MPW+AGTAL+HS  V E+R ++K WT+LL+I AFSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFATDPTRGVFILAILVFFIGGSLALYAWRAPALRQGGIFAPVSREgalvlnnlllt  359
            SVHAFA+DP+RG+FILA++V+  GGSL L+A R+  +R     A  SRE+ L+ NN+LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  aaaaavfvgtlYPLALEAFDGSKITVGPPYFNLTVGALMLPVVFAMPFGPLLAWKRGDLA  419
            AA   V++GTL PL    ++ + I+VG P+FN     LM+P  + +  GPL+ W R D +
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR-DRP  419

Query  420  GAAQRLM--TafgagiviaalaayaqgggPILAPFGMGLAAFVVIGAAVEIFERAGFGRV  477
               ++L+  +   + ++   L+   ++    +++ GM++A  + + A  E  +R + G  
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG--  477

Query  478  PFGTAVARFRGLPRSAFGGALAHAGVGVCLFGIIAETSWNAERIIGVKVGQSFEVGGYEL  537
                +   ++G+         AH G++V + GI    + + ER + ++ G+S  + +Y +
Sbjct  478  --TKTSLSYWGM-------VAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRF  528

Query  538  TLDRLEPREGPNYRDLVGVFNVRRGGVDAGTIESAKRLFTARNMPTTEAGIRTIGFSQLY  597
            T+  +    GPNYR+ V+++ V R G   + +++ KRL+ +  M  TEA+I      +LY
Sbjct  529  TFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLY  588

Query  598  VSLGDELPGGAVGVRAYWKPFVTLIW  623
             +LG+EL  GA +VR Y KPFV  IW
Sbjct  589  AALGEELDNGAWAVRLYYKPFVRWIW  614

647) nrfE in NC_006840


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  296 bits (1109),  Expect = 3e-81, Method: Compositional matrix adjust.
 Identities = 228/563 (41%), Positives = 371/563 (66%), Gaps = 18/563 (3%)

Query  57   LGYGFYIDDFSIRYIAEHSNSALPVFFKIAAIWGGHEGSllfwvltltlwvglitlKRKS  116
            L  +F ++DF++ Y+A +SN+ LPV +++AA WG+HEGSLL+WVL ++ W   +++  + 
Sbjct  57   LVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQ  116

Query  117  IEQSYLVRVLLILNGLIVIFSAFTLFASNPFI-IYANTPLEGRDLNPMLQDIGLIFHPPL  175
            +    + RVL ++  +   F AF LF+S PF    +  P+EGRDLNP+LQD GLIFHPPL
Sbjct  117  VPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPL  176

Query  176  LYLGYVGfaatfsfalaalMMKKVPSQWVGYARNWTLLAWSLLTAGISLGSWWAYYELGW  235
            LY+GYVGF+ +F+FA+AAL+  ++ S    +AR WTL AW +LT GI LGS WAYYELGW
Sbjct  177  LYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGW  236

Query  236  GGWWFWDPVENASLLPWLTSTALLHTLIASHKRklllkasiilalVTFCLSILGTFVVRS  295
            GGWWFWDPVENAS++PWL++TALLH++  +++R  +   +++L++ +F L +LGTF+VRS
Sbjct  237  GGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRS  296

Query  296  GVLTSVHAFAVDPTRGiilllilfivmllsfslYTVKSRQINSEPIQHFISRDFLFLVLC  355
            GVL SVHAFA DP+RG+++L ++ +V   S+ L++V+++++ S   + + SR+ L+L   
Sbjct  297  GVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNN  356

Query  356  GLFAIATVTVLLGTFYPMIFQILGLGNISVGAPYFNLLF----VPMALIALGMMALSIFV  411
             L+  A + VLLGT+ P++ + LGLG+ISVG P+FN +F    VP AL    +++++ +V
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFAL----LLGVGPLV  412

Query  412  QWNKKAEMATIKNT-AIFIGSSVISGMLIYTLQYDCIYV----IPLIVWILSIAVIIGTV  466
            +W +       K   A  + + V+S +L   L+   I +    +++  WI ++  +  +V
Sbjct  413  RWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI-AVLAVAEAV  471

Query  467  WEIKRSKGKNIS---MAIAHIGVAVVMIGAAMNSYHSFETSAKMEPGMSAKLANYNIHYK  523
              + R+   ++S   M  AH+G+AV + G A +   S E   +M +G S  + +Y + ++
Sbjct  472  QRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFR  531

Query  524  DTELLVGANYTAEQANLRIYENGKEIANVHPQRRHYQVRVMNMSEPAMHWFWRGDIYVTL  583
            +   + G+NY +  A + +  +G   A +H+++R Y+   M M+E+A++     D+Y +L
Sbjct  532  EVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAAL  591

Query  584  GEKLKDGSFALRLQYKAYVRWIW  606
            GE L +G+ A+RL YK++VRWIW
Sbjct  592  GEELDNGAWAVRLYYKPFVRWIW  614

648) K756_00895 in NC_021521


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  296 bits (1107),  Expect = 4e-81, Method: Compositional matrix adjust.
 Identities = 261/621 (43%), Positives = 410/621 (67%), Gaps = 16/621 (2%)

Query  1    MLPELGY--FCLVLLAGISGLQVLCSLWGEIRHQPFWLSGNRLFSLIQallalacfgcla  58
            M+PE G   +CL L  G++ L  + +LWG  R ++  +++  +F+ +  +   + F  L 
Sbjct  1    MMPEYGHALLCLAL--GVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLV  58

Query  59   yafIYDDFSIAYVAAHSNSQLPTFFKFAATWGGHEGSMLFWLTALALWTGIFCIFSGKID  118
             AF+ +DF++AYVA++SN+QLP  ++ AATWG+HEGS+L+W+  ++ WT    +FS ++ 
Sbjct  59   HAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVP  118

Query  119  RLFTYRTlaslaliilgfalfillVSNPFERSFPPSP-EGRDLNPMLQDVGLIFHPPLLY  177
              +  R LA ++++  GF  FIL+ S PF R++P+ P EGRDLNP+LQD GLIFHPPLLY
Sbjct  119  ADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLY  178

Query  178  LGYVGFAVTFAMTMAMLLGGVFDYAIARWIRPWTMVAWGFLTAGIILGAWWAYYELGWGG  237
            +GYVGF+V+FA ++A LL+G +D A++R  RPWT+ AW FLT GI+LG+ WAYYELGWGG
Sbjct  179  MGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGG  238

Query  238  WWFWDPVENASLMPWLLGTALLHSLVVSEQRGIFSYWTillaifafalsllGTFIVRSGV  297
            WWFWDPVENAS+MPWL GTALLHS+ V+EQR+ F  WT+LL+I AF+L LLGTF+VRSGV
Sbjct  239  WWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGV  298

Query  298  LTSVHAFAVDAERGMallilffslsfvalalfalRVNLWQGNVRFHLFSKETALLLVNGL  357
            L SVHAFA D+ RGM +L +   ++  +L LFA+R +  ++ V   L S+E+ LL  N L
Sbjct  299  LVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVL  358

Query  358  FALATLVVILGTFYPMIFSAMGWGSISVGAPYFNTIFAPLALILLCLMGFAIVLRWKHIP  417
            +  A LVV+LGT+ P++   +G GSISVG P+FNT+F+ L + +  L+G + ++RW +  
Sbjct  359  LMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR  418

Query  418  QRQIlwqlallpvavllslGFSYQVLPQVYVHQLQWQPTLFISLAIWVVLTHL--PYQRF  475
             R+I   L    V+ L+   +    LP +  +++    ++ +++A W+ +  +  + QR 
Sbjct  419  PRNIRKLLWAAVVTTLVLSVL----LPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV  474

Query  476  MWQIRPL----AMRLAHIGFAISVIGAMMNSYYADEVGVRLKPTQSAELAGLHFEYVKHH  531
             +  +      +M  AH+G+A+++ G   +  Y+ E +VR+++ +S  + + +F +   +
Sbjct  475  SRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  532  NEIGANYTAEVAEFHLYDQHHQKLATLLPERRYYDVRTMTMAEVGLAHYGLDDIYIVMGD  591
            +  G+NY + VA + +  +H +  A L +E+R Y+   M M+E ++      D+Y  +G+
Sbjct  535  DITGPNYRGGVALIGV-TRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  592  KFGNKEYAFRLHYKPYVRILW  612
             ++N   A RL YKP+VR +W
Sbjct  594  ELDNGAWAVRLYYKPFVRWIW  614

649) Mar181_0843 in NC_015559


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  293 bits (1098),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 302/587 (52%), Positives = 428/587 (73%), Gaps = 10/587 (1%)

Query  67   TDDFSVLYVSQNSNVDLPFRYKFSAVWGGHEGSlllwvlilalwclavalRLDTLPQTIG  126
             +DF+V YV+ NSN +LP +Y+ +A WG+HEGSLLLWVL+++ W LAVA+    +P  I 
Sbjct  63   VNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIV  122

Query  127  PLVLSVLGWVASGFLAFLLFTSSPFVRILPDVPVSGGDLNPLLQDIGLILHPPILYMGYv  186
            + VL+V+G V +GFLAF+LFTS+PF R LP  PV G DLNPLLQD GLI+HPP+LYMGYV
Sbjct  123  ARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYV  182

Query  187  gfsvafafavvaLITGNLNaywarwarpwtaaawaSLTLGITLGSWWAYYELGWGGWWFW  246
            GFSVAFAFA+ AL++G L++  +R ARPWT AAW  LTLGI LGS WAYYELGWGGWWFW
Sbjct  183  GFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFW  242

Query  247  DPVENASFMPWLAGTALLHSLVVTEKRGVFKSWTVLLAIftfslsllgtflVRSGVLTSV  306
            DPVENASFMPWLAGTALLHS+ VTE+R+ FK+WT+LL+I +FSL LLGTFLVRSGVL SV
Sbjct  243  DPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSV  302

Query  307  HAFAADPTRGVFilallialvggslllYALRAGQVRSLVSFGFSGREAWlllnnillsvl  366
            HAFA+DP+RG+FILA+++ + GGSLLL+A+R+ +VRS V+ ++ +RE+ LL NN+LL   
Sbjct  303  HAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAA  362

Query  367  tltvllgtlypllFDALGMGRISVGAPYFNAVFGPIALCLMVFMAIGPFSKWHQTKLAAW  426
             L VLLGTL PL+   LG+G ISVG P+FN++F  + + + +++++GP+ +W + +    
Sbjct  363  MLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNI  422

Query  427  WKPMlgaallstglaaaia--lRQEYDWLTWCSLAVAFWVMFMTLLDWFNKQFVTKRQKI  484
            +K + +A + +  L+  ++  L +    +T  ++A+A W+  +++ +    Q V++  K 
Sbjct  423  RKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAE--AVQRVSRGTKT  480

Query  485  QPWRALPSRYYAMVIAHLGMAISLVGVIMVSVNSHEAMLKMSPGSQAEVGGYVFVFDSME  544
                  +  Y +MV AHLG+A+++ G+      S E  ++M +G    + +Y F F  + 
Sbjct  481  ------SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  545  LIKGPNYLSDRGHFQVYQQGQLVADLHPEKRFFTTRQQVMTEAALGAGFTRDLYLSLGEK  604
             I GPNY ++ + + V ++G+  A LH+EKR++ T + VMTEAA+++G+TRDLY +LGE 
Sbjct  535  DITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  605  LEDGAWGVRIHIKSFVRWIWFggllmvlggmlAAFDKGYRQKKEKTQ  651
            L++GAW+VR+  K+FVRWIW GGLLM LGG+L   D  YR++K   +
Sbjct  595  LDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRRKPLPE  641

650) nrfE in NC_022356


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  292 bits (1093),  Expect = 6e-80, Method: Compositional matrix adjust.
 Identities = 237/561 (43%), Positives = 377/561 (68%), Gaps = 4/561 (0%)

Query  56   LLAYSFAVDDFTLEYVAAHSNSQLPTFFKVAATWGGHEGSMlfwlfslslwlaafaffNR  115
            +L  +F V+DFT+ YVA++SN+QLP  ++VAATWG+HEGS+L+W++ +S W  A A F+R
Sbjct  56   VLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR  115

Query  116  KNDRTFSAQSLSLLGLICFGFAVFILFYSNPFGRIFPA-PAEGRDLNPMLQDVGLIFHPP  174
            +    + A+ L+++G++C GF  FILF S PF+R +PA P EGRDLNP+LQD GLIFHPP
Sbjct  116  QVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPP  175

Query  175  LLYVGYVGFAVNFAMSLSALIYNQSARQIARSMRGWVLVSWLFLTIGIVLGAWWAYYELG  234
            LLY+GYVGF+V FA +++AL+  +    ++R  R W L +W+FLT+GIVLG+ WAYYELG
Sbjct  176  LLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELG  235

Query  235  WGGWWFWDPVENASLMPWllglallhslMATEKQGVFSYWttlfsllafafsVLGTFIVR  294
            WGGWWFWDPVENAS+MPWL G ALLHS+  TE+++ F  WT L+S+ AF++ +LGTF+VR
Sbjct  236  WGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVR  295

Query  295  SGALTSVHAFALDNTRGYvllliffvltvlafGLFALRAGSLSESAVNFQFVSKSGGill  354
            SG L SVHAFA D +RG  +L +  ++T  ++ LFA+R+  +    VN  + S+ + +L 
Sbjct  296  SGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSR-VNNALWSRESLLLG  354

Query  355  lnilltiATVSTFLGTFYPMLFQAMNWGSISVGSPYFNSIFFPiitvililmvislsiRK  414
             N+LL  A +  +LGT+ P++ + +  GSISVG P+FN++F  ++  + +L+ ++  +R 
Sbjct  355  NNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRW  414

Query  415  VQFDRVLLIRYVW-LLIPSLILASLMIWQQLRHNSALNFHAFAFvlltlaiwlllvtlwQ  473
             +     + + +W  ++ +L+L+ L+ W       A+   + A       + +     + 
Sbjct  415  GRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV  474

Query  474  NW-RQIRLSQFGMILAHCGVAIVTIGAIMSGYFGSEIGVRLAPQQSQTLGQYEFHYRQFS  532
            ++  +  LS  GM+ AH G+A+   G   S  ++ E +VR+ + +S T+ +Y F +R+  
Sbjct  475  SRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVR  534

Query  533  NEIGPNFTAEIAFFDVTENGKPYAEIIPERRYYDVRTMTMSEVGLNGGFWGDLYIVMGDS  592
            +  GPN+ + +A+++VT +G P A + +E+R Y+   M M+E +++GG+  DLY  +G+ 
Sbjct  535  DITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  593  LGKGEFTFRLHYKPLIRWLWA  613
            L++G  + RL YKP++RW+WA
Sbjct  595  LDNGAWAVRLYYKPFVRWIWA  615

651) HIB_10740 in NC_016809


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  291 bits (1089),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 241/570 (43%), Positives = 381/570 (67%), Gaps = 22/570 (3%)

Query  56   LLAYSFAVDDFTLEYVAAHSNSQLPTFFKMAATWGGHEGSMlfwlfslslwlaafaffNR  115
            +L  +F V+DFT+ YVA++SN+QLP  +++AATWG+HEGS+L+W++ +S W  A A F+R
Sbjct  56   VLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR  115

Query  116  KNDRTFSAQSLSLLGLICFGFAVFILFYSNPFGRIFPA-PAEGRDLNPMLQDVGLIFHPP  174
            +    + A+ L+++G++C GF  FILF S PF+R +PA P EGRDLNP+LQD GLIFHPP
Sbjct  116  QVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPP  175

Query  175  LLYVGYVGFVVNFAMSLRALIYNQSARQIARSMRGWVLVSWLFLTIGIVLGAWWAYYELG  234
            LLY+GYVGF V FA ++ AL+  +    ++R  R W L +W+FLT+GIVLG+ WAYYELG
Sbjct  176  LLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELG  235

Query  235  WGGWWFWDPVENASLMPWllglallhslMATEKQGVFSYWttlfsllafafsVLGTFIVR  294
            WGGWWFWDPVENAS+MPWL G ALLHS+  TE+++ F  WT L+S+ AF++ +LGTF+VR
Sbjct  236  WGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVR  295

Query  295  SGALTSVHAFALDNTRGYVLLLIffvltalafglfalraGSSSESAVKFQFVSKSGGill  354
            SG L SVHAFA D +RG +++L F VL + +  L+    G    S V+  + S+ + +L 
Sbjct  296  SGVLVSVHAFASDPARG-MFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLG  354

Query  355  lnilltiATVSTFLGTFYPMLFQAMNWGSISVGSPYFNSIF----FPiitaililmiivl  410
             N+LL  A +  +LGT+ P++ + +  GSISVG P+FN++F     P+   + +  ++  
Sbjct  355  NNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRW  414

Query  411  SIRKGQFDRTLLIRCGW-LLIPSLILACLMIWQQLRHNSALNFHAFAFVLLTLAIWLLFV  469
            +  + +  R LL    W  ++ +L+L+ L+ W  L ++  +   A +   +++A W+  +
Sbjct  415  GRDRPRNIRKLL----WAAVVTTLVLSVLLPW--LLEDKIIAMTAVG---MAMACWIAVL  465

Query  470  TLWQNWRQI------RLSQFGMILAHCGVAIVTIGAVMTGYFGSEIGVRLAPQQSQTLGQ  523
            ++ +  +++       LS  GM+ AH G+A+   G   +  ++ E +VR+ + +S T+ +
Sbjct  466  AVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHD  525

Query  524  YEFHYRQFSNEIGPNFTAEVAFFDVTKNGKPYAEIIPERRYYDVRTMTMSEVGLDGGFWG  583
            Y F +R+  +  GPN+ + VA+++VT++G P A + +E+R Y+   M M+E ++DGG+  
Sbjct  526  YRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTR  585

Query  584  DLYIVMGDSLGKGEFTFRLHYKPLIRWLWA  613
            DLY  +G+ L++G  + RL YKP++RW+WA
Sbjct  586  DLYAALGEELDNGAWAVRLYYKPFVRWIWA  615

652) VS_1928 in NC_011753


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  291 bits (1089),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 231/558 (42%), Positives = 361/558 (65%), Gaps = 10/558 (1%)

Query  59   YAFVSDDFSILYVAEHSNTQLPSFFKLAAVWAGHEGSLLFWVLTISVWS-GVIALQKHYS  117
             AFV +DF++ YVA +SNTQLP  +++AA W++HEGSLL+WVL +S W+ +V  + ++ +
Sbjct  59   HAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVP  118

Query  118  NEYQSRVLWVMNLLLAIFTWFTLFSSNPFEMN-SILPLEGRDLNPMLQDVGLIFHPPLLY  176
             +  +RVL VM ++ A F  F LF+S PF    + +P+EGRDLNP+LQD GLIFHPPLLY
Sbjct  119  ADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLY  178

Query  177  LGYVGFSvvlafavaallvDPIEFDWVAHCRSWCLVAWIFLTAGIILGSWWAYYELGWGG  236
            +GYVGFSV +AFA+AALL + ++       R+W L AW+FLT GI+LGS WAYYELGWGG
Sbjct  179  MGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGG  238

Query  237  WWFWDPVENASLLPWLTSTALLHCLGVAKGKQQLLKWSLSLAFITFCLSILGTFIVRSGV  296
            WWFWDPVENAS++PWL++TALLH ++V+  +  +  W+L L++ +F L +LGTF+VRSGV
Sbjct  239  WWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGV  298

Query  297  LTSVHAFAVDPAKGIAlllilmlvlvssfslliiRGESFGSNPITSFASKSFLSLVAVLI  356
            L SVHAFA DPA+G+ +L +++LV  +S+ L+ +RG+   S    ++ S+  L L   ++
Sbjct  299  LVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVL  358

Query  357  FVLATAVVVFGTFYPMVFELLGLGNISVGAPYFNll---iaplallalgvvglapllSIK  413
            ++ A  VV++GT+ P+V   LGLG+ISVG P+FN +   +     L LGV  L      +
Sbjct  359  LMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR  418

Query  414  PQATKDVIASLAVVSFVLGYICYSWQVEQVQRQVMVLMTWSLAFWVLLTHVYGLA--VTR  471
            P+  + ++ +  V ++VL+ +  +W +E+ +   M  +  ++A W+ +  V      V+R
Sbjct  419  PRNIRKLLWAAVVTTLVLSVL-LPWLLED-KIIAMTAVGMAMACWIAVLAVAEAVQRVSR  476

Query  472  SSKFQRKVWVMTFAHVGVAILAVGAAMNSYHSFERSYKLSPGAQVEFMDWTLAHEDTELY  531
            ++K     W M  AH+G+A+   G A +   S ER  ++ +G  V + D  ++  +    
Sbjct  477  GTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDI  536

Query  532  VASNFTAEKAILKLET-GEQSFSITPERRHYQVRVMNMSEPAMKWFWHGDVYITMGEKVD  590
             ++N+ +  A++ +   GE    + +E+R Y+   M M+E+A+      D+Y ++GE +D
Sbjct  537  TGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELD  596

Query  591  ATAYAFRVQYKAYARWIW  608
              A A R+ YK++ RWIW
Sbjct  597  NGAWAVRLYYKPFVRWIW  614

653) cycK in NC_007761


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  290 bits (1086),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 273/599 (46%), Positives = 397/599 (67%), Gaps = 19/599 (3%)

Query  60   AHVVSDFSVENVWENSHSLVPLIYKYSGVWGNHEGsmmlwllilalfsalvaifGANLPE  119
            A VV+DF+V  V  NS++ +P+ Y+ ++ WG HEGS++LW+L+++  +  VA+F+ ++P 
Sbjct  60   AFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPA  119

Query  120  TLKANVLAVQAWISLAFTLFILLTSNPFLR-LDPAPAEGRDLNPVLQDVGLAIHPPLLYL  178
             + A VLAV + +  +F  FIL+TS PF R L + P EGRDLNP+LQD GL +HPPLLY+
Sbjct  120  DIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYM  179

Query  179  GYVGFSVCFSFAVAALIEGRIDAAWARWVRPWTLAAWTCLTLGIAMGSYWAYYELGWGGW  238
            GYVGFSV F+FA+AAL+ GR+D+A +R  RPWTLAAW  LTLGI +GS WAYYELGWGGW
Sbjct  180  GYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGW  239

Query  239  WFWDPVENASFMPWLAGTALLHSALVMEKREALKIWTVLLAILTFSLSLMGTFLVRSGVL  298
            WFWDPVENASFMPWLAGTALLHS  V E+R ++K WT+LL+I +FSL L+GTFLVRSGVL
Sbjct  240  WFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVL  299

Query  299  TSVHAFASDPTRGVfilsillifiggalslfALRAPKLAAGGLFAPISREGALVLNNLIL  358
             SVHAFASDP+RG+FIL+++++  GG+L LFA+R+ ++ +    A  SRE+ L+ NN++L
Sbjct  300  VSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLL  359

Query  359  TVACGTVLTGTLYPLLLETLTGDKISVGPPFFNLTFGLLMAPLLVIVPFGPLLAW--KRG  416
              A   VL GTL PL+   L  + ISVG PFFN  F  LM P+ +++  GPL+ W   R 
Sbjct  360  MAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRP  419

Query  417  DLLGALQRLYVVAALAFTAAVIVFYLQHGGPVLSVlglaaglflilgaVADLWYRAGIGK  476
              +  L +  VV++L ++  ++   L++    ++ +G+A +  + + AVA+   R + G 
Sbjct  420  RNIRKLLWAAVVTTLVLS-VLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGT  478

Query  477  VAGSIAWRRLSGLPRSAFGTALAHAGLGVSVLGIVAVTTFQSEHVVAMKPGEIIEAGGYS  536
             ++   W           G   AH GL+V++ GI     +  E+ V M++G+ +   +Y 
Sbjct  479  KTSLSYW-----------GMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  537  LAFDGMRPGRGPNYTEERGHFTIRRAGVAVAETWSAKRLYTARQMPTTEAGILTFGLSQL  596
            ++F  +R   GPNY    + + + R G + A   + KRLY + +M  TEA+I      +L
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  597  YVSLGDATKDGGIVVRIWWKPFILCIWGGALIMAAGGLVSLSDRRLRVGAPRRKAKAKP  655
            Y +LG+   +G+  VR+  KPF+  IW+G+L+MA GGL+ L+D R R    RRK+ + +
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR----RRKPLPEA  642

654) XF2460 in NC_002488


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  289 bits (1082),  Expect = 4e-79, Method: Compositional matrix adjust.
 Identities = 304/606 (51%), Positives = 427/606 (71%), Gaps = 34/606 (5%)

Query  50   LAGAFALLTYAFLGNDFSVQYVAENSHSLLPTLYRSTAVWGAHEGSlllwvlllAGWTAS  109
            +AGAF +L  AF+ NDF+V YVA NS++ LP  YR +A WGAHEGSLLLWVLL++GWT +
Sbjct  50   VAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLA  109

Query  110  VALRSHTLPATLSarilgvlglialgflalilFTSNPFARLLPAVP-EGNDLNPLLQDPG  168
            VA+ S+ +PA + AR+L+V+G++  GFLA+ILFTS PFAR LPA P EG DLNPLLQDPG
Sbjct  110  VAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPG  169

Query  169  MIVHPPLLYAGYIGfavpfafavavLLEGRIDPTWLRWSRPWTHTAWALLTLGIALGSWW  228
            +I HPPLLY GY+GF+V+FAFA+A LL GR+D++  R +RPWT +AW +LTLGI LGS W
Sbjct  170  LIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAW  229

Query  229  AYYELGWGGWWFWDPVENASFMPWLIGVALIHSQAITDKRGSFTHWtlllaitafalall  288
            AYYELGWGGWWFWDPVENASFMPWL G AL+HS A+T++R++F  WTLLL+I AF+L LL
Sbjct  230  AYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLL  289

Query  289  gtflVRSSVLTSVHAFAADPVRgafillliftliggalllYARRAPQLTPVTINMQQRFT  348
            GTFLVRS+VL SVHAFA+DP RG FIL ++  + GG+LLL+A R+ +       ++ R  
Sbjct  290  GTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHR-------VRSRVN  342

Query  349  PV--SRETllllnnlllTCACAMVLLGTLYPLLADALALGQLSVGPPYFGPlftllmtpl  406
                SRE+LLL NN+LL  A  +VLLGTL PL+   L+LG +SVG P+F  +FT LM P+
Sbjct  343  NALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPF  402

Query  407  ivllplGPFTRWQREHP------------STplvllapwaalslavaalaGITTPQHHWK  454
             +LL +GP+ RW R++P            +T ++ +     L   + A++++  +   W 
Sbjct  403  ALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWI  462

Query  455  TMLSVAAAAWVLLGTLRFLWWHWRITGSRPTPSTLGMVLAHAGIGVFLTGALLVETLSLQ  514
            ++L+VA A             ++   G++ + S  GMV AH G++V +TG  + +  S++
Sbjct  463  AVLAVAEAV------------QRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVE  510

Query  515  REIALSPGQTLTLGPITLHFDALLEHHGPNYVADRARFSLLRNTHPLGTLTTEKRRYVSG  574
            R++ + +G+++T+    + F  + +  GPNY ++ A +++ R+ +P + L +EKR Y ++
Sbjct  511  RDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTS  570

Query  575  GQVTTEAGIHPGALGDIYVALGESLGNGSWAIQAHYKPFVRWIWlgaalmalggliaaaD  634
              V TEA+I+ G   D+Y ALGE L+NG+WA++  YKPFVRWIW G+ LMALGGL+  AD
Sbjct  571  RMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLAD  630

Query  635  RRFRHH  640
             R+R++
Sbjct  631  PRYRRR  636

655) Gdia_2932 in NC_011365


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  288 bits (1080),  Expect = 6e-79, Method: Compositional matrix adjust.
 Identities = 271/605 (45%), Positives = 407/605 (68%), Gaps = 27/605 (4%)

Query  24   PLVGARRRDPRLMALAPALAVGQMLALAFSFACLIDAAVRDDFsvqnvaansaaaKPLLY  83
            PL G  R D+R+MA A  +A    + +A +F  L++A V +DF+V  VA+NS +  P+ Y
Sbjct  24   PLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWY  83

Query  84   KITGVWGNHEGSVLLWALILGICGGAVALFGRNLPSALRARVIAVLGGVSAGFQLFCLTT  143
            ++++ WG HEGS+LLW L+++    AVA+F+R++P+ + ARV+AV+G V AGF  F L T
Sbjct  84   RVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFT  143

Query  144  SNPFDRVWPA-PMDGQGMNPLLQDPGLAFHPPILYTGYvgfavpfafavaaLIEGRVDAA  202
            S PF R  PA P++G+++NPLLQDPGL FHPP+LY GYVGF+V+FAFA+AAL+ GR+D+A
Sbjct  144  SGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSA  203

Query  203  WGRWVRPWAVAAWCFLTCGIALGSWWSYYVLGWGGYWFWDPVENASLIPWLTGTALVHSA  262
              R  RPW++AAW FLT GI LGS W+YY LGWGG WFWDPVENAS++PWL+GTAL+HS 
Sbjct  204  FTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSM  263

Query  263  IVVEKREALKIWTVLLAIGTFSFSLSGTFLVRSGILNSVHAFANDPARgifilgllalvi  322
             V E+R ++K WT+LL+I +FS+ L GTFLVRSG+L SVHAFA+DPARG+FIL+++ LV 
Sbjct  264  AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVT  323

Query  323  ggslllFAIRAPAL---VAGGLFAPVSREGLLVVNNILLCSICAVVLTGTMYPPFMSLLF  379
            GGSLLLFA+R+  +   V  +L    SRE+LL+ NN+LL +   VVL GT+ P     L 
Sbjct  324  GGSLLLFAVRGHRVRSRVNNALW---SRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLG  380

Query  380  GKTISVGKPFFDataaplaipllaFMGFGPMMPWKRAQFWPVLRRLWWAGIVTALAFC-L  438
              +ISVG PFF++  + L +P+  ++G GP++ W R + + + R+L WA++VT+L +  L
Sbjct  381  LGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNI-RKLLWAAVVTTLVLSVL  439

Query  439  MAWRIRDVLPLLAATG---AVWVIAASVADIAERVRLFRIPPGASLQrarmlpraalgaa  495
            ++W + D +  ++A G   A W+   +VA+  +RV     + G+        + +  G  
Sbjct  440  LPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV-----SRGTK------TSLSYWGMV  488

Query  496  lahagvgISVLGLA-AMSQAQHRIVEVRVGQTEMLAGDAWTLTAIRAAPGPNYTSLIATI  554
             AH G+++++ G+A + + + +R V +R G++  + +   T+  +R   GPNY + +A I
Sbjct  489  AAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALI  548

Query  555  EVRHDGRLVTVLHPSKRTFPSQNQTTTEVAIHTNLMSDLYGVLGDRHGTDADPTYVLRLH  614
             V ++G   +VLH+ KR + +     TE AI+  L  DLY+ LG+  +   + +  +RL 
Sbjct  549  GVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELD---NGAWAVRLY  605

Query  615  YNPLA  619
            Y+P+ 
Sbjct  606  YKPFV  610

656) cycK in NC_010125


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  288 bits (1080),  Expect = 6e-79, Method: Compositional matrix adjust.
 Identities = 271/605 (45%), Positives = 407/605 (68%), Gaps = 27/605 (4%)

Query  24   PLVGARRRDPRLMALAPALAVGQMLALAFSFACLIDAAVRDDFsvqnvaansaaaKPLLY  83
            PL G  R D+R+MA A  +A    + +A +F  L++A V +DF+V  VA+NS +  P+ Y
Sbjct  24   PLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWY  83

Query  84   KITGVWGNHEGSVLLWALILGICGGAVALFGRNLPSALRARVIAVLGGVSAGFQLFCLTT  143
            ++++ WG HEGS+LLW L+++    AVA+F+R++P+ + ARV+AV+G V AGF  F L T
Sbjct  84   RVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFT  143

Query  144  SNPFDRVWPA-PMDGQGMNPLLQDPGLAFHPPILYTGYvgfavpfafavaaLIEGRVDAA  202
            S PF R  PA P++G+++NPLLQDPGL FHPP+LY GYVGF+V+FAFA+AAL+ GR+D+A
Sbjct  144  SGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSA  203

Query  203  WGRWVRPWAVAAWCFLTCGIALGSWWSYYVLGWGGYWFWDPVENASLIPWLTGTALVHSA  262
              R  RPW++AAW FLT GI LGS W+YY LGWGG WFWDPVENAS++PWL+GTAL+HS 
Sbjct  204  FTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSM  263

Query  263  IVVEKREALKIWTVLLAIGTFSFSLSGTFLVRSGILNSVHAFANDPARgifilgllalvi  322
             V E+R ++K WT+LL+I +FS+ L GTFLVRSG+L SVHAFA+DPARG+FIL+++ LV 
Sbjct  264  AVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVT  323

Query  323  ggslllFAIRAPAL---VAGGLFAPVSREGLLVVNNILLCSICAVVLTGTMYPPFMSLLF  379
            GGSLLLFA+R+  +   V  +L    SRE+LL+ NN+LL +   VVL GT+ P     L 
Sbjct  324  GGSLLLFAVRGHRVRSRVNNALW---SRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLG  380

Query  380  GKTISVGKPFFDataaplaipllaFMGFGPMMPWKRAQFWPVLRRLWWAGIVTALAFC-L  438
              +ISVG PFF++  + L +P+  ++G GP++ W R + + + R+L WA++VT+L +  L
Sbjct  381  LGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNI-RKLLWAAVVTTLVLSVL  439

Query  439  MAWRIRDVLPLLAATG---AVWVIAASVADIAERVRLFRIPPGASLQrarmlpraalgaa  495
            ++W + D +  ++A G   A W+   +VA+  +RV     + G+        + +  G  
Sbjct  440  LPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV-----SRGTK------TSLSYWGMV  488

Query  496  lahagvgISVLGLA-AMSQAQHRIVEVRVGQTEMLAGDAWTLTAIRAAPGPNYTSLIATI  554
             AH G+++++ G+A + + + +R V +R G++  + +   T+  +R   GPNY + +A I
Sbjct  489  AAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALI  548

Query  555  EVRHDGRLVTVLHPSKRTFPSQNQTTTEVAIHTNLMSDLYGVLGDRHGTDADPTYVLRLH  614
             V ++G   +VLH+ KR + +     TE AI+  L  DLY+ LG+  +   + +  +RL 
Sbjct  549  GVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELD---NGAWAVRLY  605

Query  615  YNPLA  619
            Y+P+ 
Sbjct  606  YKPFV  610

657) R2846_1374 in NC_017452


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  288 bits (1079),  Expect = 7e-79, Method: Compositional matrix adjust.
 Identities = 239/566 (43%), Positives = 383/566 (68%), Gaps = 14/566 (2%)

Query  56   LLAYSFAADDFTLEYVAAHSNSQLPTFFKVAATWGGHEGSMlfwlfslslwlaafaffNR  115
            +L  +F  +DFT+ YVA++SN+QLP  ++VAATWG+HEGS+L+W++ +S W  A A F+R
Sbjct  56   VLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR  115

Query  116  KNNRTFSAQSLSLLGLICFGFSVFILFYSNPFGRIFPA-PAEGRDLNPMLQDVGLIFHPP  174
            +    + A+ L+++G++C GF  FILF S PF+R +PA P EGRDLNP+LQD GLIFHPP
Sbjct  116  QVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPP  175

Query  175  LLYVGYVGFAVNFVMSLSALIYNQSARQIARSMRGWVLVSWLFLTIGIVLGAWWAYYELG  234
            LLY+GYVGF+V F  +++AL+  +    ++R  R W L +W+FLT+GIVLG+ WAYYELG
Sbjct  176  LLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELG  235

Query  235  WGGWWFWDPVENASLMPWllglallhslMATEKQGVFNYWttlfsllafafsVLGTFIVR  294
            WGGWWFWDPVENAS+MPWL G ALLHS+  TE+++ F+ WT L+S+ AF++ +LGTF+VR
Sbjct  236  WGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVR  295

Query  295  SGALTSVHAFALDNTRGYVLLLIffvltalafglfalraGSSSESAVKFQFVSKSGGill  354
            SG L SVHAFA D +RG +++L F VL + +  L+    G    S V+  + S+ + +L 
Sbjct  296  SGVLVSVHAFASDPARG-MFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLG  354

Query  355  lnilltiATVSTFLGTFYPMLFQAMNWGSISVGSPYFNSiffpiittililmvivlsiRK  414
             N+LL  A +  +LGT+ P++ + +  GSISVG P+FN++F  ++  + +L+ +   +R 
Sbjct  355  NNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRW  414

Query  415  GQFDRTLLIRCGW-LLIPSLILAGLMIWQQLRHNSALNFHAFAFVLLTLAIWLLFVTLWQ  473
            G+     + +  W  ++ +L+L+ L+ W  L ++  +   A +   +++A W+  +++ +
Sbjct  415  GRDRPRNIRKLLWAAVVTTLVLSVLLPW--LLEDKIIAMTAVG---MAMACWIAVLAVAE  469

Query  474  NWRQI------RLSQFGMILAHCGVAIVTIGAVMSGYFGSEIGVRLAPQQSQTLGQYEFH  527
              +++       LS  GM+ AH G+A+   G   S  ++ E +VR+ + +S T+ +Y F 
Sbjct  470  AVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  528  YRQFSNEIGPNFTAEIAFFDVTKNGKPYAEIIPERRYYDVRTMTMSEVGLDGGFWGDLYI  587
            +R+  +  GPN+ + +A+++VT++G P A + +E+R Y+   M M+E ++DGG+  DLY 
Sbjct  530  FREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYA  589

Query  588  VMGDSLGKGEFTFRLHYKPLIRWLWA  613
             +G+ L++G  + RL YKP++RW+WA
Sbjct  590  ALGEELDNGAWAVRLYYKPFVRWIWA  615

658) ccmF-1 in NC_021905


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  287 bits (1075),  Expect = 1e-78, Method: Compositional matrix adjust.
 Identities = 269/600 (45%), Positives = 391/600 (66%), Gaps = 21/600 (3%)

Query  60   AHVVSDFSVENVWENSHSLVPLIYKYSGVWGNHEGsmmlwllilalfsalvaifGASLPE  119
            A VV+DF+V  V  NS++ +P+ Y+ ++ WG HEGS++LW+L+++  +  VA+F+  +P 
Sbjct  60   AFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPA  119

Query  120  TLKANVLAVQAWISLAFTLFILLTSNPFLR-LDPAPAEGRDLNPVLQDVGLAIHPPLLYL  178
             + A VLAV + +  +F  FIL+TS PF R L + P EGRDLNP+LQD GL +HPPLLY+
Sbjct  120  DIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYM  179

Query  179  GYVGFSVCFSFAIAALIEGRIDAAWARWVRPWTLAAWTCLTLGIAMGSYWAYYELGWGGW  238
            GYVGFSV F+FAIAAL+ GR+D+A +R  RPWTLAAW  LTLGI +GS WAYYELGWGGW
Sbjct  180  GYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGW  239

Query  239  WFWDPVENASFMPWLAGTALLHSALVMEKREALKIWTVLLAILTFSLSLMGTFLVRSGVL  298
            WFWDPVENASFMPWLAGTALLHS  V E+R ++K WT+LL+I +FSL L+GTFLVRSGVL
Sbjct  240  WFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVL  299

Query  299  TSVHAFASDPTRGVfilsillifiggalslfALRAPKLAAGGLFAPISREGALVLNNLIL  358
             SVHAFASDP+RG+FIL+++++  GG+L LFA+R+ ++ +    A  SRE+ L+ NN++L
Sbjct  300  VSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLL  359

Query  359  TVACGTVLTGTLYPLLLETLTGDKISVGPPFFNLTFGLLMAPLLVIVPFGPLLAWKRGDL  418
              A   VL GTL PL+   L  + ISVG PFFN  F  LM P+ +++  GPL+ W R+  
Sbjct  360  MAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRP  419

Query  419  LGALQRLYLVAALAFTAAVIVFYLHHGGPVLSVlglaaglflilgaiadlWYRAGIGKVA  478
                + L      ++  +V++  L ++  +       A              + ++  VA
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMA-----------CWIAVLAVA  468

Query  479  GSIAWRRLSGLPRSAF---GTALAHAGLGVSVLGIVAVTTFQSEHVVAMKPGEIIEAGGY  535
             ++  +R+S   ++++   G   AH GL+V++ GI     +  E+ V M++G+ +   +Y
Sbjct  469  EAV--QRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  536  SLAFDGMRPGRGPNYTEERGHFTIRRAGVAVADTWSAKRLYTARQMPTTEAGILTFGLSQ  595
             ++F  +R   GPNY    + + + R G + A   + KRLY + +M  TEA+I      +
Sbjct  527  RFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  596  LYVSLGDATKDGGIVVRIWWKPFILCIWGGALIMAAGGLVSLSDRRLRVGAPRRKAKAKP  655
            LY +LG+   +G+  VR+  KPF+  IW+G+L+MA GGL+ L+D R R    RRK+ + +
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR----RRKPLPEA  642

659) PB2503_05237 in NC_014414


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  287 bits (1073),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 275/621 (45%), Positives = 410/621 (67%), Gaps = 15/621 (2%)

Query  1    MTSDIGQVSLILALLTALVQTGLGLWGGHRGDTALMSGASRAALCQaglvvlafaaltva  60
            M ++ G+  L LAL  AL+ +   LWG  RGD+ +M++A+  A      V  AF  L  A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   FIRSDFAILTVFQNSHTAKPLIYKIAGVWGNHEGSLLLWVMilaglgaaiagfgQRLPET  120
            F+ +DF++  V  NS+T  P+ Y++A+ WG HEGSLLLWV++++G   A+A F++++P  
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LKARTLGIQgligaaflafallTSNPFA-TLTPAPVEGMDLNPLLQDPGLAFHPPFLYLG  179
            + AR L++ G++ A+FLAF L+TS PFA TL + PVEG DLNPLLQDPGL FHPP+LY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGfsvafsfalaallEGRVDPAWARWVRPWTLLAWTALTIGIGLGALWAYMELGWGGYW  239
            YVGFSVAF+FA+AALL GR+D+A +R  RPWTL AW  LT+GI LG+ WAY ELGWGG W
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLAGTALLHSAIVVEKRNTLKLWTVLMAITAFSASLLGAFVVRSGVLT  299
            FWDPVENAS+MPWLAGTALLHS  V E+R  +K WT+L++I AFS  LLG+F+VRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFANDPDRGAVLLLIFVVLTGGALVLFAWRGGAMQAEGRFAAVSRESalilnnvvla  359
            SVHAFA+DP RG  +L + V++TGG+L+LFA RG  +++    A  SRES L+ NNV+L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  vvTFTVLIGTFWPLFREVTTGERITVGPPYYSavttplvvvlalvmaagvmlpWKRGYlr  419
               + VL+GT+ PL +       I+VG P+++++ T L+V +AL+++ G ++ W R+  R
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  dlprrl-aaalGITGLSVLILAVTGGRGGVMAFAGLATGCFIILLTVSDLVSRTKLFSAG  478
            ++ + L AA +    LSVL+  +  ++   M+  G+A +C I +L+V++ V R       
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS-----  475

Query  479  PVAALRRAKGFPRAYWGGSLAHAGVGIAILGMVGTSLWVTERRVVLSPGEMTSLAGFEVR  538
                  R+   + +YWG   AH G++++I G+  +     ER V + +G+  ++ ++   
Sbjct  476  ------RGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  539  YEAIRTIAEANYTTERSTFALERNGKVVARLMPERRWYPAAEQQTVEAAVLPRWANDIYI  598
            +  +R I+ +NY    + +++ R+G   A L +E+R Y ++     EAA+    + D+Y 
Sbjct  530  FREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYA  589

Query  599  AVGEPRGVEDEARVVRLYHHP  619
            A+GE   +++ A+ VRLY  P
Sbjct  590  ALGE--ELDNGAWAVRLYYKP  608

660) RPE_1934 in NC_008435


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  286 bits (1071),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 259/581 (45%), Positives = 385/581 (67%), Gaps = 15/581 (2%)

Query  47   LLF--VGASFTALTVLYITSDFSVVNVFENSHSQKPLLYKISGVWGNHEGSMLLWVSILA  104
            LLF  V+++F  L   ++ +DF+V  V  NS++Q P+ Y++++ WG HEGS+LLWV +++
Sbjct  45   LLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMS  104

Query  105  LFGGMVAAFGNNLPLTLRAYVLAVQGWIASAFYLFILITSNPFLRTATP-PLEGRDLNPI  163
                 VA F+ ++P  + A VLAV G + ++F  FIL+TS PF RT  + P+EGRDLNP+
Sbjct  105  GWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPL  164

Query  164  LQDIGLAIHPPMLYLGYVGFSISFSFAIAALIEGRVDAAWARWVRPWTLVAWIFLTLGIA  223
            LQD GL +HPP+LY+GYVGFS++F+FAIAAL+ GR+D+A +R  RPWTL AW+FLTLGI 
Sbjct  165  LQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIV  224

Query  224  MGSYWAYYELGWGGWWFWDPVENASLMPWLAGTALLHSAVVMEKRNALKVWtillsiltf  283
            +GS WAYYELGWGGWWFWDPVENAS+MPWLAGTALLHS  V E+R ++K WT+LLSI +F
Sbjct  225  LGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAF  284

Query  284  slsllgtflVRSGVLTSVHAFATDPTRGVFILLILCAFIGGslalyaarasslKQGGLFA  343
            SL LLGTFLVRSGVL SVHAFA+DP+RG+FIL ++    GGSL L+A R+  ++     A
Sbjct  285  SLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNA  344

Query  344  PISREGAlvlnnlflttatatvfIGTLYPLALEVMTGDKISVGAPFFNLTFGPLCVPLLL  403
              SRE+ L+ NN++L +A   V++GTL PL    +  + ISVG PFFN  F  L VP+ L
Sbjct  345  LWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFAL  404

Query  404  AVPFGPLLAWKRGDLLGAAQRl-iaagvaalivvallwafvHGGSTLAPLAIGLAVFVIV  462
             +  GPL+ W R+      + L  A   + ++ V L W + +   +++++++++A  + V
Sbjct  405  LLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAV  464

Query  463  GALVDLVERIGLFRNPLGIAWRRARGLPRATWGTAFAHAGVGVALIGIVCETTWNSEYIA  522
             A+ + V+R++           R+   + + WG   AH G++V++ GI      + E   
Sbjct  465  LAVAEAVQRVS-----------RGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDV  513

Query  523  TMKPNDTTMVAGYQVKLDTLSQRQGPNFREMFASFSVSQDGQLLSTMVPSKRSFQTRGMS  582
             M++ D+  + +Y+  +  + +  GPN+R   A ++V+++G+  + + + KR ++T  M 
Sbjct  514  RMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMV  573

Query  583  TSEAALLTRGVSQLYISLGEPTADGGIAVRVYHKPWVLLIW  623
             +EAA+      +LY +LGE   +G+ AVR+Y KP V  IW
Sbjct  574  MTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

661) ccmF-2 in NC_008570


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  285 bits (1068),  Expect = 5e-78, Method: Compositional matrix adjust.
 Identities = 250/554 (46%), Positives = 378/554 (69%), Gaps = 1/554 (0%)

Query  61   FGLDDFTLVYVAQHANSALPLGFKLAAVWGGHEGSMLLFVFALGLWGALVALCSRRVDPL  120
            F ++DFT+ YVA ++N+ LP+ +++AA WG+HEGS+LL V+ ++ W   VA+ SR+V + 
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  ITTRVLAIMGLIVGLFGLYTLIFSSPFDRQFPG-PLEGRDLNPMLQDIGLIIHPPLLYLG  179
            I +RVLA+MG++ + F  + L+ S+PF R +P+ P+EGRDLNP+LQD GLI+HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFAVNFAFAMAALHSGRLDGAVAHWSRPWALGSWVFLTAGIMLGSWWAYYELGWGGWW  239
            YVGF+V FAFA+AAL SGRLD+A ++ +RPW+L++WVFLT GI+LGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLLPWLLGTALLHALVVCEKRGAYGHAVlllsiftfslsllgtfVVRSGVLT  299
            FWDPVENAS++PWL GTALLH++ V E+R+++    LLLSI +FSL LLGTF+VRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFAVDPSRGltlllllgllltcaltlfalraDIRAPYARFGFWSKEGLLGaaillls  359
            SVHAFA DP+RG+ +L ++ L+   +L LFA+R++   +    ++WS+E+LL +  +LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  vacasvllGTFYPMVFQSLHLGSLSVGAPYFNTIFVPLAICLMAMMTQLPRLRWQHLAAQ  419
             A   VLLGT+ P+V + L LGS+SVG P+FNT+F  L + +  ++   P +RW +  ++
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  420  HRIKVllpclfgllggtllslAYPEPLRGGWLGLAANVlslwlmaslllpllqptslrel  479
            +  K+L + +   L  ++L     E    +  +++  +     + ++  ++ + +     
Sbjct  421  NIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKT  480

Query  480  TLNRLGSLLAHLGVAVCALGIAQVSHHSQEGGAVLAADKPYRLGAFEFRYEGSEPIIGPN  539
            +L+  G + AHLG+AV   GIA   + S E +  + A+ +  +  + F +     I GPN
Sbjct  481  SLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPN  540

Query  540  YTAERITLSVHQNGKEVARLTPERRHYSVRTMNMNEPGIAWGLFGDLYVVLGDKMGPGAY  599
            Y +    ++V ++G   A L +E+R Y+   M M E++I  GL  DLY  LG+ ++ GA 
Sbjct  541  YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAW  600

Query  600  AMRLHYKPLVRWIW  613
            A+RL YKP+VRWIW
Sbjct  601  AVRLYYKPFVRWIW  614

662) Sphch_0803 in NC_015593


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  282 bits (1057),  Expect = 4e-77, Method: Compositional matrix adjust.
 Identities = 258/565 (46%), Positives = 387/565 (69%), Gaps = 13/565 (2%)

Query  50   TAVAFALLITLFLRSDMSVLLVVTNSHSMKP-WLYKFAGTWGNHEGSMLLWvtvmgvaga  108
             A AF +L+  F+ +D +V  V  NS++  P W Y+ A+TWG HEGS+LLWV +M+    
Sbjct  50   VAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVW-YRVAATWGAHEGSLLLWVLLMSGWTL  108

Query  109  avaLFERALRRETHMATLGGQAAISLGFYAFLLFASNPFARIDPP-AADGQGLNPLLQDP  167
            AVA+F R +  +     L+  + +  GF AF+LF+S PFAR  P+ + +G++LNPLLQDP
Sbjct  109  AVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDP  168

Query  168  GLAFHPPTLYLGYVGLSVAFSFAVGALLTRQVDASFARAMRPWVLGAWILLTLGITAGSY  227
            GL FHPP LY+GYVG+SVAF+FA++ALL+ ++D++F+R  RPW L+AW++LTLGI  GS 
Sbjct  169  GLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSA  228

Query  228  WAYYELGWGGWWFWDPVENASLMPWLAATALLHSVTVLATRDALRAWTVMLAVVAFSMSM  287
            WAYYELGWGGWWFWDPVENAS+MPWLA+TALLHS++V   R +++AWT++L++ AFS+ +
Sbjct  229  WAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCL  288

Query  288  VGTFLVRSGILTSVHAFAVDPERGTFilallgiyiggalalFGWRVGAVREGAPFELVSR  347
            +GTFLVRSG+L SVHAFA DP RG FILA++ +  GG+L LF+ R   VR      L SR
Sbjct  289  LGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSR  348

Query  348  ETMlvvnnlllsvilglvligtlYPLMTEAFG-HKVSVGAPYFDRIAGPIALALMIAMIV  406
            E++L+ NN+LL   + +VL+GTL PL+   +G   +SVG P+F+ +   + +++ + + V
Sbjct  349  ESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGV  408

Query  407  GPLTrwrrdrmrevtrrMAVPLVVGGLVFLTLAALAW---GRIGILPFLGLVIALAVAVG  463
            GPL RW RDR R++ + +  + VV  LV+  L  L+W   ++I  +  +G+ +A  +AV 
Sbjct  409  GPLVRWGRDRPRNIRKLLWAA-VVTTLVLSVL--LPWLLEDKIIAMTAVGMAMACWIAVL  465

Query  464  SIAPLWKRNLR--RTPLFAWGMVIAHLGCAVSLAGMACDSAFTVEKLVAARPGDTVETAG  521
            ++A   +R  R  +T+L  WGMV AHLG AV+++G+A    ++VE+ V  R+GD+V   +
Sbjct  466  AVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHD  525

Query  522  WTLRFKQILPIAGDNWTALQADMEASRGGEP-VLIHPQSRFFASpptttteaalltRWNG  580
              + F+++  I+G N  +  A +  +R GEP  ++H++ R++ ++    TEAA+      
Sbjct  526  YRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTR  585

Query  581  QLYVVLGQEADEGRWQLRIWWKPFV  605
            +LY  LG+E D+G W +R+  KPFV
Sbjct  586  DLYAALGEELDNGAWAVRLYYKPFV  610

663) ccmF in NC_008358


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  282 bits (1054),  Expect = 7e-77, Method: Compositional matrix adjust.
 Identities = 251/562 (45%), Positives = 366/562 (66%), Gaps = 13/562 (2%)

Query  48   TIVYAFMRSDFSVALVANNSHTLKPMVYKIAGAWGNHEGSMALWCLVTLGFGAIAAATMR  107
             +V AF+ +DF+VA VA NS+T  P+ Y++A++WG HEGS+ LW L+  G     A   R
Sbjct  56   VLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR  115

Query  108  TGRETFEARALGVQGMLAVGSLAYLLFASSPFLR-LDPAPFQGAGLNPLLQDPALAIHPP  166
                 + AR L+V GM+  G LA++LF+S+PF R L + P +G +LNPLLQDP+L +HPP
Sbjct  116  QVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPP  175

Query  167  MLYLGYVGYSFVFALAAAGLMEGRIDRVWAKEARIWSLAAFAPLTLGIALGSYWAYYELG  226
            +LY+GYVG+S  FA+A A+L+ GR+D   ++ AR W+LAA   LTLGI LGS WAYYELG
Sbjct  176  LLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELG  235

Query  227  WGGWWFWDPVENASLMPWLIGAALLHSVIVTEKRESFAAWTALLAVLSFLFSILGAFLVR  286
            WGGWWFWDPVENAS+MPWL G+ALLHS+ VTE+R +F AWT LL++ +F + +LG+FLVR
Sbjct  236  WGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVR  295

Query  287  SGVLTSVHAFAVDPERGTllllgllgyggfalglfalRAPSLMGGKPWTLLSREGALMAN  346
            SGVL SVHAFA DP RG ++L  ++   G +L LFA+R+  + +    +L SRE+ L++N
Sbjct  296  SGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGN  355

Query  347  NvvlivatltvllgtlFPLIAEAFG-RTISVGEPYFNLTFvpilvlaliilpvaQAWAWG  405
            NV+L+ A L VLLGTL+PL+   +G  +ISVGEP+FN  F  ++V   ++L V+    WG
Sbjct  356  NVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWG  415

Query  406  KADLKSWRR--WAMGGAALTAVFMllgigpldiplgAAFGLALGFWLVFGAVWEMKRRAI  463
            +   ++ R+  WA   ++L    +L  +    I   +A G+A++ W+   AV E  +R  
Sbjct  416  RDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQR--  473

Query  464  NIRRIFKMPARVWAMTLAHAGLGLFVIGAVLETSGRYEATLALPEGGSGTVAGWAITLDE  523
             + R  K +   W+M  AH GL++ + G  +  +   E  + +  G+S T+ +  +T+ E
Sbjct  474  -VSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  524  VRAIEGPNWYADKAVL--TARKGSASAELLPMKRFYPAAMMPTTETAIHKTGAGDLYVAL  581
            VR I GPN Y +   L   +R G + A L + KR+Y ++ M  TE+AI+   + DLY AL
Sbjct  533  VRDITGPN-YRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAAL  591

Query  582  GEQREIDGEARWVFRVYYNPMV  603
            GE+ +   ++ W  R+YY+P V
Sbjct  592  GEELD---NGAWAVRLYYKPFV  610

664) cycK in NC_014932


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  281 bits (1052),  Expect = 1e-76, Method: Compositional matrix adjust.
 Identities = 238/568 (42%), Positives = 367/568 (65%), Gaps = 14/568 (2%)

Query  54   VYAYIVSDFSVLNVVENSHSEKPMLYKIVGVWGNHEGSMLLWVLLLGFFSILIALFSQQL  113
            V A++V+DF+V  V  NS+++ P+ Y++ + WG HEGS+LLWVLL++  ++ +A+FS+Q+
Sbjct  58   VHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQV  117

Query  114  PEQFKALVLGCQSWITSAFLLFILFISNPFIRVNPP-VLQGKDLNPVLQDISLVIHPPLL  172
            P ++ A VL+  + + ++FL FILF S PF R  P+  ++G+DLNP+LQD +L++HPPLL
Sbjct  118  PADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLL  177

Query  173  YLGYVGFAVCFSFSIAALIIGYVDKVWAYWIRPWVLLAWIFLTVGIMVGSYWAYYELGWG  232
            Y+GYVGF+V F+F+IAAL+ G +D   +   RPW L AW+FLT+GI++GS WAYYELGWG
Sbjct  178  YMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWG  237

Query  233  GYWFWDPVENVSLMPWLSGTALLHSVIIFEKRNLLKSWTLFLAIITFSLSLMGTFLVRSG  292
            G WFWDPVEN S+MPWL+GTALLHS+ + E+R  +K+WTL+L+I +FSL L+GTFLVRSG
Sbjct  238  GWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSG  297

Query  293  ILMSIHSFAVDPARGKAIlailffftggalllfaiRMPILKKRGFFHPISREGFIIlnnl  352
            +L+S+H+FA DPARG  ILA++ + TGG+LLLFA+R   ++ R      SRE++++ NN+
Sbjct  298  VLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNV  357

Query  353  flttatatvlIGTLYPYFFEALTGQKISVGPVFFNLTFGPLMMILLLFVPFGPMIAWKRG  412
            +L +A   VL+GTL P     L    ISVG  FFN  F  LM+ + L++  GP++ W R+
Sbjct  358  LLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRD  417

Query  413  DFFAVFERLW-CVFALACIACFITFYLDSLRDIfaalgvglavfvflgglaDLWGKSGYH  471
                +   LW  V +   ++ ++   L+            +     +G     W  +   
Sbjct  418  RPRNIRKLLWAAVVTTLVLSVLLPWLLED----------KIIAMTAVGMAMACW-IAVLA  466

Query  472  KVPFLVRAKRFFRLPLSVFGAALAHMGLGVTLFGIICVATFGQERILIMQIRDTVTIAGK  531
                + R  R  + +LS  G   AH+GL+VT+ GI     ++ ER + M+  D+VTI + 
Sbjct  467  VAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  532  TICFDEVRNIAGSNYSAIQFGFKIYEDKNLISNIIASKRFYSSQNISTTEVGIQSHGFSQ  591
             + F EVR+I+G+NY +    + +  + +  + + A KR+Y++  +  TE +I++    +
Sbjct  527  RFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  592  FYIAPGRINDQGL-VVHIWWKPYVICIW  618
            +Y A G   D+G   V++  KP+V  IW
Sbjct  587  LYAALGEELDNGAWAVRLYYKPFVRWIW  614

665) nfrE in NC_002940


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  281 bits (1052),  Expect = 1e-76, Method: Compositional matrix adjust.
 Identities = 250/621 (41%), Positives = 401/621 (65%), Gaps = 17/621 (2%)

Query  1    MLPELGYFSLIVAAVSASLQVLLSVF---GELFKRSHYLSFNAFFSRLQALFCTFAFGVL  57
            M+PE G  +L+  A++ +L  LLSV+   G     ++ ++  + F++L  +  + AF VL
Sbjct  1    MMPEYGH-ALLCLALGVAL--LLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVL  57

Query  58   GYAFIIDDFSIIYVAHHSNTQLPDFFKFAASWGGHEGSMLFWLTILTIWTAVFSFFANKS  117
              AF+++DF++ YVA +SNTQLP  ++ AA+WG+HEGS+L+W+ +++ WT   + F+ + 
Sbjct  58   VHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQV  117

Query  118  DRLFYDRTLAIlglislgfllfilsVSnpfernfpp-ppegrDLNPMLQDIGLILHPPLL  176
               +  R LA++G++  GFL FIL  S PF R +P+ P EGRDLNP+LQD GLI+HPPLL
Sbjct  118  PADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLL  177

Query  177  YIGYVGFAVSFAMVVASLMSGVLDAAVSRWIRPWVMISWGLLTAGIILGAWWAYYELGWG  236
            Y+GYVGF+V+FA  +A+L+SG LD+A +R  RPW + +W +LT GI+LG+ WAYYELGWG
Sbjct  178  YMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWG  237

Query  237  GWWFWDPVENASLMPWLLGTALLHSLIVTEQRGIFSYWTillaifafalsllGTFIVRSG  296
            GWWFWDPVENAS+MPWL GTALLHS+ VTEQR+ F  WT+LL+I AF+L LLGTF+VRSG
Sbjct  238  GWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSG  297

Query  297  ILTSVHAFAVDSDRGiallilffslsfialalfalKVRVWPGRVHFQLFSKEVAFLLING  356
            +L SVHAFA D+ RG+ +L +   ++  +L LFA++ +   +RV+  L S+E  +L  N 
Sbjct  298  VLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNV  357

Query  357  LLTVATSTVALGTFYPMIFTAMGWGSISVGAPYFNSIFAPLALLLMSVMGLAVVLCWKQV  416
            LL  A   V LGT+ P++   +G GSISVG P+FN++F+ L + +  ++G++ ++ W + 
Sbjct  358  LLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRD  417

Query  417  ATSVILIRLWLLPIAFSLACSLIYFTIQTNNVHQFSLLPIVFVGLAIWIIISHF--PYRR  474
                I   LW   ++  +   L+   ++ + +     +  V +++A WI +     + +R
Sbjct  418  RPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIA----MTAVGMAMACWIAVLAVAEAVQR  473

Query  475  YMWKIQPL----AMRLAHIGFAICVIGAIMNSYYGDEISVRLKPQQQASLAGFNFNYQAY  530
              +  +      +M  AH+G+A+ + G   +  Y+ E  VR+++ +  ++ ++ F ++  
Sbjct  474  VSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREV  533

Query  531  RDVIGPNYTAERAIFTIEKSHKQLATVKPERRYYDVRTMTMAEVGLYHAGLDDVYIVMGD  590
            RD+ GPNY +  A++ + +     A + +E+R Y+   M M+E ++  +   D+Y  +G+
Sbjct  534  RDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGE  593

Query  591  KLGDFEYAFRLHYKPYVSALW  611
             L++   A RL YKP+V  +W
Sbjct  594  ELDNGAWAVRLYYKPFVRWIW  614

666) XFLM_01600 in NC_017562


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  280 bits (1049),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 294/592 (50%), Positives = 417/592 (71%), Gaps = 34/592 (5%)

Query  64   NDFSVQYVAENSHSLLPTLYRSTAVWGAHEGSlllwvlllAGWTASVALRSHTLPATLSa  123
            NDF+V YVA NS++ LP  YR +A WGAHEGSLLLWVLL++GWT +VA+ S+ +PA + A
Sbjct  64   NDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVA  123

Query  124  rilgvlglialgflalilFTSNPFARLLPAVP-EGNDLNPLLQDPGMILHPPLLYAGYIG  182
            R+L+V+G++  GFLA+ILFTS PFAR LPA P EG DLNPLLQDPG+I+HPPLLY GY+G
Sbjct  124  RVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVG  183

Query  183  lavpfafavavllEGRIEPAWLRWSRPWTNIAWALLTLGIALGSWWAYYELGWGGWWFWD  242
            ++V+FAFA+A LL GR+++A  R +RPWT  AW +LTLGI LGS WAYYELGWGGWWFWD
Sbjct  184  FSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWD  243

Query  243  PVENASFMPWLIGVALIHSQAITDKRGSFTQWtlllaitafalallgtflVRSSVLTSVH  302
            PVENASFMPWL G AL+HS A+T++R++F  WTLLL+I AF+L LLGTFLVRS+VL SVH
Sbjct  244  PVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVH  303

Query  303  AFAADPVRgtfillliftliggalllYARRAPQLTPVTMDMQQRFTPV--SRETllllnn  360
            AFA+DP RG FIL ++  + GG+LLL+A R+ +       ++ R      SRE+LLL NN
Sbjct  304  AFASDPARGMFILAFMVLVTGGSLLLFAVRGHR-------VRSRVNNALWSRESLLLGNN  356

Query  361  lllTCACAMVLLGTLYPLLADALALGQLSVGPPYFGPlftllmtplivllplGPFTRWQR  420
            +LL  A  +VLLGTL PL+   L+LG +SVG P+F  +FT LM P+ +LL +GP+ RW R
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  421  EHP------------STPlvllapwaalslvvaalaGIATPQHHWKTMLSVAAAAWVLLG  468
            ++P            +T ++ +     L   + A+++++ +   W ++L+VA A      
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAV-----  471

Query  469  TLRFLWWHWRTTESRPTPSTLGMVLAHAGIGVFLTGALLVETLSLQREIALTPGQTLTLG  528
                   ++ +  ++ + S  GMV AH G++V +TG  + +  S++R++ + +G+++T+ 
Sbjct  472  -------QRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIH  524

Query  529  PITLHFDAILEHHGPNYVADRAQFSLLRNTHPLGTLTTEKRRYVSGGQVTTEVGIHPGAL  588
               + F  + +  GPNY ++ A +++ R+ +P + L +EKR Y ++  V TE +I+ G  
Sbjct  525  DYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLT  584

Query  589  GDIYVALGESLGNGSWAIQAHYKPFVRWIWlgaalmalggliaaaDRRFRHH  640
             D+Y ALGE L+NG+WA++  YKPFVRWIW G+ LMALGGL+  AD R+R++
Sbjct  585  RDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

667) Xfasm12_1622 in NC_010513


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  280 bits (1047),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 295/592 (50%), Positives = 416/592 (71%), Gaps = 34/592 (5%)

Query  64   NDFSVQYVAENSHSLLPTLYRSTAVWGAHEGSlllwvlllAGWTANVALRSHTLPATLSa  123
            NDF+V YVA NS++ LP  YR +A WGAHEGSLLLWVLL++GWT  VA+ S+ +PA + A
Sbjct  64   NDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVA  123

Query  124  rilgvlglialgflalilFTSNPFARLLPAAP-EGNDLNPLLQDPGMILHPPLLYAGYIG  182
            R+L+V+G++  GFLA+ILFTS PFAR LPA P EG DLNPLLQDPG+I+HPPLLY GY+G
Sbjct  124  RVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVG  183

Query  183  lavpfafavavllEGRIEPAWLRWSRPWTNIAWALLTLGIALGSWWAYYELGWGGWWFWD  242
            ++V+FAFA+A LL GR+++A  R +RPWT  AW +LTLGI LGS WAYYELGWGGWWFWD
Sbjct  184  FSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWD  243

Query  243  PVENASFMPWLIGVALIHSQAITDKRGSFTHWtlllaitafalallgtflVRSSVLTSVH  302
            PVENASFMPWL G AL+HS A+T++R++F  WTLLL+I AF+L LLGTFLVRS+VL SVH
Sbjct  244  PVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVH  303

Query  303  AFAADPVRgafillliftliggalllYARRAPQLTPVTMDMQQRFTPV--SRETllllnn  360
            AFA+DP RG FIL ++  + GG+LLL+A R+ +       ++ R      SRE+LLL NN
Sbjct  304  AFASDPARGMFILAFMVLVTGGSLLLFAVRGHR-------VRSRVNNALWSRESLLLGNN  356

Query  361  lllTCACAMVLLGTLYPLLADALALGQLSVGPPYFGPlftllmtplivllplGPFTRWQR  420
            +LL  A  +VLLGTL PL+   L+LG +SVG P+F  +FT LM P+ +LL +GP+ RW R
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  421  EHP------------STplvllapwaalslavaalaGITTPQHHWKTMLSVAAAAWVLLG  468
            ++P            +T ++ +     L   + A++++  +   W ++L+VA A      
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAV-----  471

Query  469  TLRFLWWHWRTTGSRPTPSTLGMVLAHAGIGVFLTGALLVETLSLQREIALTPGQTLTLG  528
                   ++ + G++ + S  GMV AH G++V +TG  + +  S++R++ + +G+++T+ 
Sbjct  472  -------QRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIH  524

Query  529  PITLHFDALLEHHGPNYVADRAQFSLLRNTHPLGTLTTEKRRYVSGGQVTTEVGIHPGAL  588
               + F  + +  GPNY ++ A +++ R+ +P + L +EKR Y ++  V TE +I+ G  
Sbjct  525  DYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLT  584

Query  589  GDIYVALGESLGNGSWAIQAHYKPFVRWIWlgaalmalggliaaaDRRFRHH  640
             D+Y ALGE L+NG+WA++  YKPFVRWIW G+ LMALGGL+  AD R+R++
Sbjct  585  RDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

668) XfasM23_1565 in NC_010577


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  280 bits (1049),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 294/592 (50%), Positives = 417/592 (71%), Gaps = 34/592 (5%)

Query  64   NDFSVQYVAENSHSLLPTLYRSTAVWGAHEGSlllwvlllAGWTASVALRSHTLPATLSa  123
            NDF+V YVA NS++ LP  YR +A WGAHEGSLLLWVLL++GWT +VA+ S+ +PA + A
Sbjct  64   NDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVA  123

Query  124  rilgvlglialgflalilFTSNPFARLLPAVP-EGNDLNPLLQDPGMILHPPLLYAGYIG  182
            R+L+V+G++  GFLA+ILFTS PFAR LPA P EG DLNPLLQDPG+I+HPPLLY GY+G
Sbjct  124  RVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVG  183

Query  183  lavpfafavavllEGRIEPAWLRWSRPWTNIAWALLTLGIALGSWWAYYELGWGGWWFWD  242
            ++V+FAFA+A LL GR+++A  R +RPWT  AW +LTLGI LGS WAYYELGWGGWWFWD
Sbjct  184  FSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWD  243

Query  243  PVENASFMPWLIGVALIHSQAITDKRGSFTQWtlllaitafalallgtflVRSSVLTSVH  302
            PVENASFMPWL G AL+HS A+T++R++F  WTLLL+I AF+L LLGTFLVRS+VL SVH
Sbjct  244  PVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVH  303

Query  303  AFAADPVRgtfillliftliggalllYARRAPQLTPVTMDMQQRFTPV--SRETllllnn  360
            AFA+DP RG FIL ++  + GG+LLL+A R+ +       ++ R      SRE+LLL NN
Sbjct  304  AFASDPARGMFILAFMVLVTGGSLLLFAVRGHR-------VRSRVNNALWSRESLLLGNN  356

Query  361  lllTCACAMVLLGTLYPLLADALALGQLSVGPPYFGPlftllmtplivllplGPFTRWQR  420
            +LL  A  +VLLGTL PL+   L+LG +SVG P+F  +FT LM P+ +LL +GP+ RW R
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  421  EHP------------STPlvllapwaalslvvaalaGIATPQHHWKTMLSVAAAAWVLLG  468
            ++P            +T ++ +     L   + A+++++ +   W ++L+VA A      
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAV-----  471

Query  469  TLRFLWWHWRTTESRPTPSTLGMVLAHAGIGVFLTGALLVETLSLQREIALTPGQTLTLG  528
                   ++ +  ++ + S  GMV AH G++V +TG  + +  S++R++ + +G+++T+ 
Sbjct  472  -------QRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIH  524

Query  529  PITLHFDAILEHHGPNYVADRAQFSLLRNTHPLGTLTTEKRRYVSGGQVTTEVGIHPGAL  588
               + F  + +  GPNY ++ A +++ R+ +P + L +EKR Y ++  V TE +I+ G  
Sbjct  525  DYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLT  584

Query  589  GDIYVALGESLGNGSWAIQAHYKPFVRWIWlgaalmalggliaaaDRRFRHH  640
             D+Y ALGE L+NG+WA++  YKPFVRWIW G+ LMALGGL+  AD R+R++
Sbjct  585  RDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

669) ccmF in NC_004556


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  280 bits (1049),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 294/592 (50%), Positives = 417/592 (71%), Gaps = 34/592 (5%)

Query  64   NDFSVQYVAENSHSLLPTLYRSTAVWGAHEGSlllwvlllAGWTASVALRSHTLPATLSa  123
            NDF+V YVA NS++ LP  YR +A WGAHEGSLLLWVLL++GWT +VA+ S+ +PA + A
Sbjct  64   NDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVA  123

Query  124  rilgvlglialgflalilFTSNPFARLLPAVP-EGNDLNPLLQDPGMILHPPLLYAGYIG  182
            R+L+V+G++  GFLA+ILFTS PFAR LPA P EG DLNPLLQDPG+I+HPPLLY GY+G
Sbjct  124  RVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVG  183

Query  183  lavpfafavavllEGRIEPAWLRWSRPWTNIAWALLTLGIALGSWWAYYELGWGGWWFWD  242
            ++V+FAFA+A LL GR+++A  R +RPWT  AW +LTLGI LGS WAYYELGWGGWWFWD
Sbjct  184  FSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWD  243

Query  243  PVENASFMPWLIGVALIHSQAITDKRGSFTQWtlllaitafalallgtflVRSSVLTSVH  302
            PVENASFMPWL G AL+HS A+T++R++F  WTLLL+I AF+L LLGTFLVRS+VL SVH
Sbjct  244  PVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVH  303

Query  303  AFAADPVRgtfillliftliggalllYARRAPQLTPVTMDMQQRFTPV--SRETllllnn  360
            AFA+DP RG FIL ++  + GG+LLL+A R+ +       ++ R      SRE+LLL NN
Sbjct  304  AFASDPARGMFILAFMVLVTGGSLLLFAVRGHR-------VRSRVNNALWSRESLLLGNN  356

Query  361  lllTCACAMVLLGTLYPLLADALALGQLSVGPPYFGPlftllmtplivllplGPFTRWQR  420
            +LL  A  +VLLGTL PL+   L+LG +SVG P+F  +FT LM P+ +LL +GP+ RW R
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  421  EHP------------STPlvllapwaalslvvaalaGIATPQHHWKTMLSVAAAAWVLLG  468
            ++P            +T ++ +     L   + A+++++ +   W ++L+VA A      
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAV-----  471

Query  469  TLRFLWWHWRTTESRPTPSTLGMVLAHAGIGVFLTGALLVETLSLQREIALTPGQTLTLG  528
                   ++ +  ++ + S  GMV AH G++V +TG  + +  S++R++ + +G+++T+ 
Sbjct  472  -------QRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIH  524

Query  529  PITLHFDAILEHHGPNYVADRAQFSLLRNTHPLGTLTTEKRRYVSGGQVTTEVGIHPGAL  588
               + F  + +  GPNY ++ A +++ R+ +P + L +EKR Y ++  V TE +I+ G  
Sbjct  525  DYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLT  584

Query  589  GDIYVALGESLGNGSWAIQAHYKPFVRWIWlgaalmalggliaaaDRRFRHH  640
             D+Y ALGE L+NG+WA++  YKPFVRWIW G+ LMALGGL+  AD R+R++
Sbjct  585  RDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYRRR  636

670) ccmF in NC_014006


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  280 bits (1046),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 244/548 (45%), Positives = 377/548 (69%), Gaps = 6/548 (1%)

Query  64   SDMSVLLVAANSHSMKP-WLYKFAGTWGNHEGSMLLWvtvmgvagtavaLFERALRRETH  122
            +D +V  VA+NS++  P W Y+ A+TWG HEGS+LLWV +M+    AVA+F R +  +  
Sbjct  64   NDFTVAYVAGNSNTQLPVW-YRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIV  122

Query  123  MATLGGQAAISLGFYAFLLFASNPFARIDPP-AADGQGLNPLLQDPGLAFHPPTLYLGYV  181
               L+  + +  GF AF+LF+S PFAR  P+ + +G++LNPLLQDPGL FHPP LY+GYV
Sbjct  123  ARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYV  182

Query  182  GLSVAFSFAVGALLTRQVDAAFARAMRPWVLGAWILLTLGITAGSYWAYYELGWGGWWFW  241
            G+SVAF+FA++ALL+ ++D+AF+R  RPW L+AW++LTLGI  GS WAYYELGWGGWWFW
Sbjct  183  GFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFW  242

Query  242  DPVENASLMPWLAATALLHSVTVLATRDALRAWTVMLAVVAFSMSMVGTFLVRSGILTSV  301
            DPVENAS+MPWLA+TALLHS++V   R +++AWT++L++ AFS+ ++GTFLVRSG+L SV
Sbjct  243  DPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSV  302

Query  302  HAFAVDPERGTFilallgiyiggalalFGWRVGAVREGAPFELVSRETMlvvnnlllsvi  361
            HAFA DP RG FILA++ +  GG+L LF+ R   VR      L SRE++L+ NN+LL   
Sbjct  303  HAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAA  362

Query  362  lglvligtlYPLLTEAFG-HKVSVGAPYFDRIAGPIALALMIVMVLGPLTRWrrdrmrev  420
            + +VL+GTL PL+   +G   +SVG P+F+ +   + +++ +++ +GPL RW RDR R++
Sbjct  363  MLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNI  422

Query  421  arrvavpavvaglvflalaalaWGRIGILPFLGLVIA--LAVAVGSVAPLWKRNLRRTPL  478
             + +  + V + ++ + L+ L  ++I  +  +G+ +A  +AV   + A  +     +T+L
Sbjct  423  RKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTSL  482

Query  479  FTWGMVIAHLGCAVSLAGMACDSAFTVEKLVAARPGDTMETAGWTLRFKQILPMAGDNWT  538
              WGMV AHLG AV+++G+A    ++VE+ V  R+GD++   +  + F+++  ++G N  
Sbjct  483  SYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYR  542

Query  539  ALQADMEASRDGGEPVLIHPQSRFFASpptttteaalltRWNGQLYVVLGQEADEGRWQL  598
            +  A +  +R+G    ++H++ R++ ++    TEAA+      +LY  LG+E D+G W +
Sbjct  543  GGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAV  602

Query  599  RIWWKPFV  606
            R+  KPFV
Sbjct  603  RLYYKPFV  610

671) swp_4658 in NC_011566


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  279 bits (1045),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 238/553 (44%), Positives = 376/553 (68%), Gaps = 12/553 (2%)

Query  56   ILAYCFLVNDFSVAYVANNSNTQLATLYKVAAVWGSHEGSMLFWVVAIAVWTAFIINRAP  115
            +L   F+VNDF+VAYVA NSNTQL+  Y+VAA WG+HEGS+L+WV+ ++ WT  +   + 
Sbjct  56   VLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSR  115

Query  116  KTEQHFHHKLVAVAAllifgfclfllfTSSPFTRLLPDIPIEGRDLNPILQDIGLIIHPP  175
            +   ++  +++AV +++  GF  F+LFTS+PF+R LP +P+EGRDLNP+LQD GLI+HPP
Sbjct  116  QVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPP  175

Query  176  LLFLGYVGLTICFagaiaallsgglCQQYARYLQPWAILAWVFLTGGNAFGSWWAYNELG  235
            LL++GYVG+++ FA AIAALLSG L   ++R+ +PW++ AWVFLT G  +GS WAY ELG
Sbjct  176  LLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELG  235

Query  236  WGGWWFWDPVENASFIPWLVATAMVHSILLTAKRGILGSCsiflailafslsllgsflvr  295
            WGGWWFWDPVENASF+PWL +TA++HS+ +T +R+ + + +++L+I AFSL LLG+FLVR
Sbjct  236  WGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVR  295

Query  296  sgvvQSVHAFASDPTRGLSILILLVVFSGSALALFAQRVKIRSTPLGFSLLSKESLILFG  355
            SGV+ SVHAFASDP+RG+ IL ++V+ +G++L LFA R     + +  +L S+ESL+L  
Sbjct  296  SGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGN  355

Query  356  NMLLVVAAISVLLGTCYPLFFEVISGQTISVGAPYFNSIFVPIAALIFLLMGFAPLQRW-  414
            N+LL+ A + VLLGT  PL    ++  +ISVG P+FN++F  +   + LL+G +PL RW 
Sbjct  356  NVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWG  415

Query  415  --QSRNKlklalilaaicltmaliaSLMMQARVNIWLLIGLFSALWIMSATGLAVVQRVA  472
              ++RN  KL        L ++++ + +++ ++     +G+  A WI   +    VQRV+
Sbjct  416  RDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS  475

Query  473  FRKYEVNNDNYGSSIRFYAMCIAHFGVAVSVLGATLVSNFETEELLRMGPGQGKTLSGYS  532
                        +S+ + +M  AH+G+AV++ G ++  N+  E  +RM +G++ T+ +Y 
Sbjct  476  --------RGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  533  FIYEETQAVEHRSYSAIQAQIRVVDSQDNFIAYLYPQRQTFKTNGMQMSAAGIRSGLFGD  592
            F + E + +   +Y +  A I  V  +++  A L ++++ ++T+ M M+ A+I +GL  D
Sbjct  528  FTFREVRDITGPNYRGGVALI-GVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  593  LYVSMGQKLTDNN  605
            LY ++G+ L +  
Sbjct  587  LYAALGEELDNGA  599

672) BJ6T_66410 in NC_017249


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  278 bits (1040),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 281/627 (45%), Positives = 411/627 (66%), Gaps = 18/627 (2%)

Query  1    MIAESGHYALVLALGLALIQSIVPLIGARLRDAALMNVARSAALAQLLF--VGASFIALV  58
            M++E GH  L LALG+AL+ S+ PL G    DA +M  A ++ +A LLF  V+++F+ LV
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMM--ASAGVFAWLLFICVAGAFFVLV  58

Query  59   MLHVNSDFSVANVYENSHSMKPLIYKITGVWGNHEGSMLLWVSILALFGGMVAAFGNNLP  118
               V +DF+VA V  NS++  P+ Y++++ WG HEGS+LLWV +++     VA F+ ++P
Sbjct  59   HAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVP  118

Query  119  LSLRAHVLAVQAWIASAFYLFILVTSNPFLR-IANPPIEGRDLNPVLQDIGLAVHPPMLY  177
              + A+VLAV + + ++F  FIL TS PF R ++  P+EGRDLNP+LQD GL  HPP+LY
Sbjct  119  ADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLY  178

Query  178  LGYVGFSISFSFAIAALMEGRIDAAWARWVRPWTLVAWIFLTLGIAMGSYWAYYELGWGG  237
            +GYVGFS++F+FAIAAL+ GR+D+A +R  RPWTL AW+FLTLGI +GS WAYYELGWGG
Sbjct  179  MGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGG  238

Query  238  WWFWDPVENASLMPWLAGTALLHSALVMEKRNALKVWtillsiltfslsllgtflVRSGV  297
            WWFWDPVENAS+MPWLAGTALLHS  V E+R ++K WT+LLSI +FSL LLGTFLVRSGV
Sbjct  239  WWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGV  298

Query  298  ITSVHAFATDPTRGVfillilclfiggslslfAGRATSLKQGGLFAPISREGalvlnnll  357
            + SVHAFA+DP+RG+FIL ++ L  GGSL LFA R+  ++     A  SRE+ L+ NN+L
Sbjct  299  LVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVL  358

Query  358  lsvacavvlFGTLYPLAMEALDF-KMSVGAPFYNltfvplfallllvvpfgpMLAWKRGD  416
            L  A  VVL+GTL PL    L++  +SVG PF+N  F  L   + L++  GP++ W R+ 
Sbjct  359  LMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR  418

Query  417  LLGVTQRl-laagvaalvviaivwawTRGGSALAPLAIGLGVFVIAGAVTDLSERTGLFR  475
               + + L  A   + ++ + + W       A+++++++++  +   AV++  +R +   
Sbjct  419  PRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS---  475

Query  476  LPFATTLHRARGLPRSAWGAAFAHAGLGVALIGIVCETTWNSEYIATMKQNDVAHVAGYD  535
                    R+   + S WG   AH GL+V++ GI      + E    M+  D   + +Y 
Sbjct  476  --------RGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  536  LKLDGLAQRQGPNFREMIAEFNVSRDGEKISVMTPSKRNFTTRGSSTTEAALLTRGASQL  595
            + +  + +  GPN+R  +A + V+R+GE  +V+ + KR + T     TEAA+    + +L
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  596  YVSLGDATADGAIAVRIYHKPLVLLIW  622
            Y +LG+   +GA AVR+Y KP+V  IW
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIW  614

673) AHML_10625 in NC_021290


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  278 bits (1042),  Expect = 6e-76, Method: Compositional matrix adjust.
 Identities = 253/556 (46%), Positives = 380/556 (69%), Gaps = 5/556 (0%)

Query  61   FGLDDFTLVYVAQHANSALPLGFKLAAVWGGHEGSMLFFVFALGLWGALVALCSRRVDPL  120
            F ++DFT+ YVA ++N+ LP+ +++AA WG+HEGS+L+ V+ ++ W   VA+ SR+V + 
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  ITTRVLAIMGLIVGLFGLYTLIFSSPFDRQFPG-PLEGRDLNPMLQDIGLIIHPPLLYLG  179
            I +RVLA+MG++ + F  + L+ S+PF R +P+ P+EGRDLNP+LQD GLI+HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFAVNFAFAMAALHSGRLDGAVAHWSRPWALGSWVFLTAGIVLGSWWAYYELGWGGWW  239
            YVGF+V FAFA+AAL SGRLD+A ++ +RPW+L++WVFLT GIVLGS WAYYELGWGGWW
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLLPWLLGTALLHALVVCEKRGAYGHAVlllsiftfslsllgtfVVRSGVLT  299
            FWDPVENAS++PWL GTALLH++ V E+R+++    LLLSI +FSL LLGTF+VRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHAFAVDPSRGltlllllgllltcaltlfalraDIRAPYARFGLLSKEgllgaailllc  359
            SVHAFA DP+RG+ +L ++ L+   +L LFA+R++   +    +L S+E+LL +  +LL 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  vacasvllgTFYPMVFQSLHLGSLSVGAPYFNTIFVPLALCLMALMTQLPRLRWQHLATQ  419
             A   VLLGT+ P+V + L LGS+SVG P+FNT+F  L + +  L+   P +RW +    
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR-DRP  419

Query  420  RRIRVL--TPClfgllggallslaYPEPLRASWLGLAANVlslwlmaslllpllqptslr  477
            R IR L  ++ +  L+ + LL+    + + A   +++  +     + ++  ++ + +   
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAM-TAVGMAMACWIAVLAVAEAVQRVSRGT  478

Query  478  elTLNRFGSLLAHLGVAVCALGIAQVSHHSQEGGAVLAAGQPYRLGAFEFRYEGSEPIIG  537
              +L+  G + AHLG+AV   GIA   + S E +  + AG++  +  + F +     I G
Sbjct  479  KTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITG  538

Query  538  PNYTAERITLSAHKDSKEVARLTPERRHYSVRTMNMNEPGIGWGMLGDLYVVLGEKMGPG  597
            PNY +    ++  +++   A L +E+R Y+   M M E++I+ G+  DLY  LGE ++ G
Sbjct  539  PNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNG  598

Query  598  AYAMRLHYKPLVRWIW  613
            A A+RL YKP+VRWIW
Sbjct  599  AWAVRLYYKPFVRWIW  614

674) cycK in NC_017082


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  276 bits (1032),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 283/627 (46%), Positives = 411/627 (66%), Gaps = 17/627 (2%)

Query  1    MIAESGHYalvlalalalIQSVVPLIGARLGDAALMNVARSTALAQLLF--VGASFIALV  58
            M++E GH  L LAL++AL+ SV PL G   GDA +M  A +  +A LLF  V+++F+ LV
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMM--ASAGVFAWLLFICVAGAFFVLV  58

Query  59   MLHVSSDFSVANVYENSHSMKPLLYKITGVWGNHEGSMLLWVAILALFGGLVAAFGNNLP  118
               V +DF+VA V  NS++  P+ Y++++ WG HEGS+LLWV +++     VA F+ ++P
Sbjct  59   HAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVP  118

Query  119  LSLRAHVLAVQAWIASAFYLFILVTSNPFLRIVNP-PVEGRDLNPVLQDIGLAVHPPMLY  177
              + A+VLAV + + ++F  FIL TS PF R + + PVEGRDLNP+LQD GL  HPP+LY
Sbjct  119  ADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLY  178

Query  178  LGYVGFSISFSFAIAALMEGRIDAAWARWVRPWTLVAWIFLTLGIAMGSYWAYYELGWGG  237
            +GYVGFS++F+FAIAAL+ GR+D+A +R  RPWTL AW+FLTLGI +GS WAYYELGWGG
Sbjct  179  MGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGG  238

Query  238  WWFWDPVENASLMPWLAGTALLHSALVMEKRNALKVWtillsiltfslsllgtflVRSGV  297
            WWFWDPVENAS+MPWLAGTALLHS  V E+R ++K WT+LLSI +FSL LLGTFLVRSGV
Sbjct  239  WWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGV  298

Query  298  ITSVHAFATDPTRGVfillilclfiggslslfAGRATSLKQGGLFAPISREGalvlnnll  357
            + SVHAFA+DP+RG+FIL ++ L  GGSL LFA R+  ++     A  SRE+ L+ NN+L
Sbjct  299  LVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVL  358

Query  358  ltvacavvlFGTLYPLAMELLADFKMSVGAPFYNltfaplftllllavpFGPMLAWKRGD  417
            L  A  VVL+GTL PL    L+   +SVG PF+N  F+ L   + L +  GP++ W R+ 
Sbjct  359  LMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR  418

Query  418  LLGVTQRL-laagvaglvviaivwawTRGGSALAPLAIGLGVFVIAGAVTDIVERTGLVR  476
               + + L  A   + ++ + + W       A+++++++++  +   AV++ V+R +   
Sbjct  419  PRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVS---  475

Query  477  LPFGTALHRARGLPRSAWGTAFAHAGLGVALIGIVCETTWNSEYIATMKQNDVAHVAGYD  536
                    R+   + S WG   AH GL+V++ GI      + E    M+  D   + +Y 
Sbjct  476  --------RGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  537  LKLDGLFQRQGPNFREMIAEFNVSRDGQTVSVMTPSKRSFTTRGSSTTEAALLTRGASQL  596
            + +  + +  GPN+R  +A + V+R+G+  +V+ + KR + T     TEAA+    + +L
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  597  YVSLGDANAEGAIAVRIYHKPLVLLIW  623
            Y +LG+   +GA AVR+Y KP+V  IW
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIW  614

675) Acry_2854 in NC_009484


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  275 bits (1027),  Expect = 9e-75, Method: Compositional matrix adjust.
 Identities = 246/607 (41%), Positives = 397/607 (66%), Gaps = 19/607 (3%)

Query  47   FVMLGLSFLALVWAGVVSDFTVRNVAEYSSSTTPLLYRITGTWGNHDgsillwclilslc  106
            F+ ++ +F+ LV A VV+DFTV  VA  S++  P+ YR+++TWG H+GS+LLW L++S  
Sbjct  47   FICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGW  106

Query  107  gATVGAFGNSIPTSLRSRVLGVLGLISAGFMAFVIAVSNPFARIWPP-PLHGAGVNPILQ  165
              +V+ F+  +P+ + +RVL+V+G++ AGF+AF++  S PFAR  P+ P++G ++NP+LQ
Sbjct  107  TLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQ  166

Query  166  DPGLAVHPPILYTGYVGFSIAFAFAVAALIEGRVDAAWGRWVRPWALVSWLFLTCGICFG  225
            DPGL  HPP+LY GYVGFS+AFAFA+AAL+ GR+D+A  R  RPW+L +W+FLT GI +G
Sbjct  167  DPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLG  226

Query  226  SLWSYYTLGWGGYWFWDPVENVALLPWLTGTALIHSAIVVEKREALKTWSVLLAIATFSL  285
            S W+YY LGWGG WFWDPVEN +++PWL+GTAL+HS  V E+R ++K+W++LL+I +FSL
Sbjct  227  SAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSL  286

Query  286  SLCGTFLVRSGLLNSVHAFSASPAQGLFIlvllaltiggslllfafrapalaaSGVFAPV  345
             L GTFLVRSG+L SVHAF++ PA+G+FIL ++ L  GGSLLLFA R+  + +    A  
Sbjct  287  CLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALW  346

Query  346  SREGALILNNIFLCIIAAVVFTGTMYPPFLDLLFNRQISVGAPFYDQTVLPLTAPLILAM  405
            SRE+ L+ NN++L     VV+ GT+ P     L    ISVG PF++     L  P+ L +
Sbjct  347  SRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLL  406

Query  406  AVGPMMSWKRAVLLPALTKLWFGAVVALI--VFGAFILRGHFvaalglagavWVMIGALI  463
            +VGP++ W R         LW + V +L+  V+ + +L + ++           M +  +
Sbjct  407  GVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKII----------AMTAVGM  456

Query  464  DLAERVRLFRVPLRQSFARLFTIPRAAI---GASLGHLGFGIAVLGIA-GMSLQVHTIRV  519
             +A ++ ++ V+  ++  R+    ++++   G   +HLG+++++ GIA + +  V+    
Sbjct  457  AMACWIAVLAVA--EAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVR  514

Query  520  LNPGQSIDLGGYNWKLISIAPAKGANYAAREATIEVTRNGHFVEMMHPETRFFTNQKVKT  579
            + +G+S+ + +Y   +  +    G+NY +  A I VTR+G+   ++H+E R++   ++  
Sbjct  515  MRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVM  574

Query  580  VAAAISTNGVRNLFATFAGDNDSGGGEFRFNIHPLAPEIWlgglimalggaislTDRRFR  639
              AAI     R+L+A+++ + D+G+   R+   P+   IW GGL+MALGG + L+D R+R
Sbjct  575  TEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

Query  640  VGAPVRN  646
               P+ +
Sbjct  635  RRKPLPE  641

676) ccmF in NC_015186


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  275 bits (1027),  Expect = 9e-75, Method: Compositional matrix adjust.
 Identities = 246/607 (41%), Positives = 397/607 (66%), Gaps = 19/607 (3%)

Query  47   FVMLGLSFLALVWAGVVSDFTVRNVAEYSSSTTPLLYRITGTWGNHDgsillwclilslc  106
            F+ ++ +F+ LV A VV+DFTV  VA  S++  P+ YR+++TWG H+GS+LLW L++S  
Sbjct  47   FICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGW  106

Query  107  gATVGAFGNSIPTSLRSRVLGVLGLISAGFMAFVIAVSNPFARIWPP-PLHGAGVNPILQ  165
              +V+ F+  +P+ + +RVL+V+G++ AGF+AF++  S PFAR  P+ P++G ++NP+LQ
Sbjct  107  TLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQ  166

Query  166  DPGLAVHPPILYTGYVGFSIAFAFAVAALIEGRVDAAWGRWVRPWALVSWLFLTCGICFG  225
            DPGL  HPP+LY GYVGFS+AFAFA+AAL+ GR+D+A  R  RPW+L +W+FLT GI +G
Sbjct  167  DPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLG  226

Query  226  SLWSYYTLGWGGYWFWDPVENVALLPWLTGTALIHSAIVVEKREALKTWSVLLAIATFSL  285
            S W+YY LGWGG WFWDPVEN +++PWL+GTAL+HS  V E+R ++K+W++LL+I +FSL
Sbjct  227  SAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSL  286

Query  286  SLCGTFLVRSGLLNSVHAFSASPAQGLFIlvllaltiggslllfafrapalaaSGVFAPV  345
             L GTFLVRSG+L SVHAF++ PA+G+FIL ++ L  GGSLLLFA R+  + +    A  
Sbjct  287  CLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALW  346

Query  346  SREGALILNNIFLCIIAAVVFTGTMYPPFLDLLFNRQISVGAPFYDQTVLPLTAPLILAM  405
            SRE+ L+ NN++L     VV+ GT+ P     L    ISVG PF++     L  P+ L +
Sbjct  347  SRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLL  406

Query  406  AVGPMMSWKRAVLLPALTKLWFGAVVALI--VFGAFILRGHFvaalglagavWVMIGALI  463
            +VGP++ W R         LW + V +L+  V+ + +L + ++           M +  +
Sbjct  407  GVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKII----------AMTAVGM  456

Query  464  DLAERVRLFRVPLRQSFARLFTIPRAAI---GASLGHLGFGIAVLGIA-GMSLQVHTIRV  519
             +A ++ ++ V+  ++  R+    ++++   G   +HLG+++++ GIA + +  V+    
Sbjct  457  AMACWIAVLAVA--EAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVR  514

Query  520  LNPGQSIDLGGYNWKLISIAPAKGANYAAREATIEVTRNGHFVEMMHPETRFFTNQKVKT  579
            + +G+S+ + +Y   +  +    G+NY +  A I VTR+G+   ++H+E R++   ++  
Sbjct  515  MRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVM  574

Query  580  VAAAISTNGVRNLFATFAGDNDSGGGEFRFNIHPLAPEIWlgglimalggaislTDRRFR  639
              AAI     R+L+A+++ + D+G+   R+   P+   IW GGL+MALGG + L+D R+R
Sbjct  575  TEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLADPRYR  634

Query  640  VGAPVRN  646
               P+ +
Sbjct  635  RRKPLPE  641

677) cycK in NC_006569


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  273 bits (1020),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 253/622 (41%), Positives = 406/622 (66%), Gaps = 33/622 (5%)

Query  11   FAVSLALILSVFGCFQAVLAARSGAASRLVSARNAIFANFVLATIGCA--VLIQAFVTSD  68
            +A+++AL+LSV+      L + + + +R++++  ++FA +++  ++ A  VL++AFV +D
Sbjct  12   LALGVALLLSVYP-----LWGVARGDARMMAS-AGVFAWLLFICVAGAFFVLVHAFVVND  65

Query  69   FSVAYVAQNSNRDLPMLYKVTAMWGAHEGSlllwlwyltlFSAAAVWLHWRDYPKSMP--  126
            F+VAYVA NSN +LP+ Y+V+A WGAHEGSLLLW+  ++  + A        +++ +P  
Sbjct  66   FTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVA-----VFSRQVPAD  120

Query  127  ---WVIATLAAIQLGFLAFVVFLSNPFL-TLTPMPGNGRDLNPLLQDPGLAFHPPVLYLG  182
               +V+A ++ +  GFLAF++F S PF  TL + P +GRDLNPLLQDPGL FHPP+LY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  183  YVGFAVPFAFAIASLIRGQTGVEWVTVVRRWVLFAWTALTSGIICGGYWAYYELGWGGYW  242
            YVGF+V+FAFAIA+L+ G+ +       R W L AW  LT GI+ G+ WAYYELGWGG W
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  243  AWDPVENASLMPWLTGTALLHSMMVQDKRGMFRAWNvflvvttflltllgtflvRSGVLT  302
             WDPVENAS+MPWL+GTALLHSM V ++R+ F+AW ++L + +F L LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  303  SVHAFAVDPGRGAYMLGFMTVAMVVGYGLIILRADRLQDDGGISSLLSREAAILGNtvll  362
            SVHAFA DP+RG ++L+FM +    +  L+ +R++R++     ++L SRE+ +LGN VLL
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVN-NALWSRESLLLGNNVLL  359

Query  363  lvvtatvmagtlFPLVVEVFSDAKISIGAPYYNKVIVPIMVALVFLLGLGPSVPWRQMSA  422
            +     V+ GTL+PLV   ++ + IS+G P++N ++  +MV++ +LLG+GP V W +  +
Sbjct  360  MAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRP  419

Query  423  KRFVGRFRLPLAFAGLTAVAAVLVSEAGIITLaaifavgfagfasladiasaiaarrrVM  482
            + +   ++ ++  + + +V    + E  II+++A+       +A LA   +         
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAV--------  471

Query  483  EQGVLRATGDVLTHSRQRIGALIIHFGVVMIGAGMIASGLFQTTQTVAMRIGDRAEAGGY  542
             Q V R+T   L+      G +  H+G+ +  +G+  S  +   + V MR GD     +Y
Sbjct  472  -QRVSRGTKTSLSYW----GMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  543  TLTLRELQDTGSANYNARVARFSISRDGELLFEMAPEKRFYPVREMATTEIAIRSSLAGD  602
             +T+RE++D  ++NY + VA ++++R+GE    + +EKR+Y    M  TE AI ++L+ D
Sbjct  527  RFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRD  586

Query  603  LYMVMGDEDGQGTVVVRIFWNP  624
            LY  +G+E ++G+  VR++ +P
Sbjct  587  LYAALGEELDNGAWAVRLYYKP  608

678) Sala_1516 in NC_008048


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  272 bits (1019),  Expect = 4e-74, Method: Compositional matrix adjust.
 Identities = 231/554 (42%), Positives = 370/554 (67%), Gaps = 9/554 (1%)

Query  50   TTAAFGLLIALFVRSDMSVELVARNSNSLKPMIFKIAGTWGNHEgsmllwlmilslsgal  109
             ++AF +L+  FV +D +V  VA NSN+  P+ +++A+TWG HEGS+LLW++++S     
Sbjct  50   VAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLA  109

Query  110  IALFEKRLREDTliatlaaqaalslgffafllfssNPFKR-LPVAPPDGQGLNPLLQDIG  168
            +A+F +++  D +   LA  + +  GF+AF+LF+S PF R LP  P +G++LNPLLQD G
Sbjct  110  VAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPG  169

Query  169  LAFHPPTLYVGYVGLSVAFSFAVGALITREIGPAFARAMRPWVLGSWIFLTLGITAGSYW  228
            L FHPP LY+GYVG+SVAF+FA++AL++  +++AF+R  RPW L++W+FLTLGI  GS W
Sbjct  170  LIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAW  229

Query  229  AYYELGWGGWWFWDPVENVSLVPWLAGAALLHSVAVTATRNALRAWTVMLAVIGFSMSMV  288
            AYYELGWGGWWFWDPVEN S++PWLAG+ALLHS+AVT  R +++AWT++L++ +FS+ ++
Sbjct  230  AYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLL  289

Query  289  GTFIVRSGLLTSVHSFAVDPERGTFLLVLMAIYIGGALTLFALRAGSVAEGKKFALLSRE  348
            GTF+VRSG+L SVH+FA DP RG F+L +M +  GG+L LFA+R+  V    + AL SRE
Sbjct  290  GTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRE  349

Query  349  GSlvinnlllttilalvllgtlYPIVAEAMG-EKISVGPPYYNKVAGPLALILCLVMVAG  407
            + L+ NN+LL + + +VLLGTL P+V   +G   ISVG P++N +   L + + L++  G
Sbjct  350  SLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVG  409

Query  408  PLLSWRKDDGKRLWSRL-PVaifagaailfalilfggKVGILPLLGMTVAGIVAVASLAP  466
            PL+ W +D  + ++  L +  + +    ++   L+ +K+  +  +GM++A  +AV ++A 
Sbjct  410  PLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAE  469

Query  467  LWGRNLR--RVPLPTWGMVVAHFGVGVCLAGMGAESAFIKERLVAAAPGETIRIADFSVK  524
               R  R  + +L+ WGMV AH+G++V ++G++    +  ER V   +G+++ I D+   
Sbjct  470  AVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFT  529

Query  525  FVGVKPLAGPNYTAIEGALVATTPSGSSFTMKPEARTFPGLMGTAPTETNEAALLTRPGG  584
            F  V+ ++GPNY +  + +  T  + +   + +E R +          + +++ LTR   
Sbjct  530  FREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGG-LTR---  585

Query  585  QLYAVLGQPVTGED  598
            +LYA LG+ +    
Sbjct  586  DLYAALGEELDNGA  599

679) Bresu_0881 in NC_014375


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  270 bits (1009),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 252/571 (45%), Positives = 383/571 (68%), Gaps = 26/571 (4%)

Query  63   TSDFSVANVASNSHTDKPMLYKVAAAWGSHEGSLVLWCLVMTVFGAALTR-ARGLPFGLK  121
             +DF+VA VA+NS+T+ P+ Y+VAA+WG+HEGSL+LW L+M+    A++  +R +P ++ 
Sbjct  63   VNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIV  122

Query  122  TSSvgvqgalgalflafavfTSNPFSR-LDPAPIQGASLNPLLQDPALAFHPPLLYMGYV  180
            +  ++V G + A FLAF +FTS PF+R L + P++G  LNPLLQDP+L FHPPLLYMGYV
Sbjct  123  ARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYV  182

Query  181  GFSVTFSLAVAALIEGKAFSGFWPAWGRWVRPWALASWVFLTGGITLGAFWAYYELGWGG  240
            GFSV+F++A+AAL+ G+  S+F     R  RPW+LA+WVFLT GI LG+ WAYYELGWGG
Sbjct  183  GFSVAFAFAIAALLSGRLDSAF----TRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGG  238

Query  241  WWFWDPVENASFMPWLAGAALLHSAVVTERRGALAGWTVflallafsfsmlgaflVRSGV  300
            WWFWDPVENASFMPWLAG+ALLHS  VTE+R+++ +WT++L++ AFS+ +LG+FLVRSGV
Sbjct  239  WWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGV  298

Query  301  LTSVHAFAVDPERGMMLLGILGFTAGSAFALFAWRAPQLKGGGMFAPVSREGALVLNNlf  360
            L SVHAFA DP RGM +L+++ + +G+++ LFA R+ ++++    A  SRE+ L+ NN++
Sbjct  299  LVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVL  358

Query  361  ltvaavtvllgtlYPLILEAATGATISVGPPYFALTFTPLMLVAFLILPAGPLLAWKRGD  420
            L  A + VLLGTL PL+      ++ISVG P+F   FT LM+   L+L  GPL+ W R+ 
Sbjct  359  LMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDR  418

Query  421  AKGAIQRl--avagalaigagfvgWLAFEPKKalaagglaigawlifgalaEVIERVRLF  478
            ++  I++L  A   +  + + ++ WL  +   A++A G+A++ W+   A+AE ++RV   
Sbjct  419  PRN-IRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV---  474

Query  479  KVPLGEVLRRARGLPLGAWGMTLAHAGLGVFVLGAVIETGFKVEAAAPISIGQTVTAGPW  538
                     R+   +L+ WGM  AH GL+V + G  +   + VE    +  G++VT    
Sbjct  475  --------SRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDY  526

Query  539  RVSLDKVEVVEGPNYLAEQGTLTVSPVRPGPAARTVTAERRFFPAGGQTTTEVGLDFRGL  598
            R ++  V  + GPNY +  + + V+  R G +   + AE+R++ ++    TE ++D    
Sbjct  527  RFTFREVRDITGPNYRGGVALIGVT--RHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLT  584

Query  599  DDVYVVMGERRAGAQGQNAWSVRVYFNPWAR  629
             D+Y  +GE      ++ AW+VR+Y++P  R
Sbjct  585  RDLYAALGE----ELDNGAWAVRLYYKPFVR  611

680) Zmob_0087 in NC_017262


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  269 bits (1005),  Expect = 5e-73, Method: Compositional matrix adjust.
 Identities = 237/558 (43%), Positives = 373/558 (67%), Gaps = 12/558 (2%)

Query  62   FMRVDLSVTLVAENDHWAKPMLYRVAASWGNHEGSMLLWVTILSFCGALLALFGGKIDQK  121
            F+  D++V+ VA N +   P+ YRVAA+WG HEGS+LLWV ++S     +A+F+ ++   
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  122  llslalgsqaflalgffafllfVSNPFARLNPP-ATEGLGLNPLLQDPGLAFHPPTLYLG  180
            +++  L+  + +  GF+AF+LF S PFAR  P+ + EG +LNPLLQDPGL FHPP LY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGLSVAFSFAVAALLTGKADRAFAKAMRIWVLGAWVFLTIGITAGSYWAYYELGWGGFW  240
            YVG+SVAF+FA+AALL+G+ D AF++  R W L+AWVFLT+GI  GS WAYYELGWGG W
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENAALMPWLAATALFHSVSVLAKRDSLRVWTLVLAVTAFSMSMIGTFLVRSGILV  300
            FWDPVENA++MPWLA+TAL+HS++V  +R +++ WTL+L++ AFS+ ++GTFLVRSG+LV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFAVDPWRGSfilgllglyiggalalfalRIAKIHQGNHFILPSREAGLVLNNLFLG  360
            SVHAFA DP RG FIL+++ L  GG+L LFA+R  +++   +  L SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  VILAIVLIGTLYPLLAEMMNGEKLSVGAPYFNMIITPlalllcllMPFGTLLRWKQDRWA  420
              + +VL+GTL PL+   +    +SVG P+FN ++T L + + LL+  G L+RW +DR  
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  SLK---WPLLVGAGLFILTEVILA--LKGLFSTAPLASISLG--VAVMVGLLCLWPLLRQ  473
            +++   W+ +V +   ++  V+L+  L + + +    +++++  +AV+     +  + R 
Sbjct  421  NIRKLLWAAVVTT---LVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG  477

Query  474  KTIHLNLWGMVLAHLGIAITLGGIASDTLFSQELLTALKPQQTARLGDWQLHFDRVMPDL  533
                L+ WGMV AHLG+A+T+ GIA    +S E    +++ ++  + D ++ F  V    
Sbjct  478  TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDIT  537

Query  534  GSDWTAIVADIRLERNGQS-FTLHPALRHFTNPVTDTSETALKTTKAGQLYLVLGQQAED  592
            G++  + VA I + R+G++   LH+  R +  +    +E+A+    + +LY  LG++ ++
Sbjct  538  GPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDN  597

Query  593  GRWQIRAWWKPLVTLIWD  610
            G W +R   KP+V  IW 
Sbjct  598  GAWAVRLYYKPFVRWIWA  615

681) ZMO1255 in NC_006526


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  269 bits (1005),  Expect = 5e-73, Method: Compositional matrix adjust.
 Identities = 237/558 (43%), Positives = 373/558 (67%), Gaps = 12/558 (2%)

Query  62   FMRVDLSVTLVAENDHWAKPMLYRVAASWGNHEGSMLLWVTILSFCGALLALFGGKIDQK  121
            F+  D++V+ VA N +   P+ YRVAA+WG HEGS+LLWV ++S     +A+F+ ++   
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  122  llslalgsqaflalgffafllfVSNPFARLNPP-ATEGLGLNPLLQDPGLAFHPPTLYLG  180
            +++  L+  + +  GF+AF+LF S PFAR  P+ + EG +LNPLLQDPGL FHPP LY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGLSVAFSFAVAALLTGKADRAFAKAMRIWVLGAWVFLTIGITAGSYWAYYELGWGGFW  240
            YVG+SVAF+FA+AALL+G+ D AF++  R W L+AWVFLT+GI  GS WAYYELGWGG W
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENAALMPWLAATALFHSVSVLAKRDSLRVWTLVLAVTAFSMSMIGTFLVRSGILV  300
            FWDPVENA++MPWLA+TAL+HS++V  +R +++ WTL+L++ AFS+ ++GTFLVRSG+LV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFAVDPWRGSfilgllglyiggalalfalRIAKIHQGNHFILPSREAGLVLNNLFLG  360
            SVHAFA DP RG FIL+++ L  GG+L LFA+R  +++   +  L SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  VILAIVLIGTLYPLLAEMMNGEKLSVGAPYFNMIITPlalllcllMPFGTLLRWKQDRWA  420
              + +VL+GTL PL+   +    +SVG P+FN ++T L + + LL+  G L+RW +DR  
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  SLK---WPLLVGAGLFILTEVILA--LKGLFSTAPLASISLG--VAVMVGLLCLWPLLRQ  473
            +++   W+ +V +   ++  V+L+  L + + +    +++++  +AV+     +  + R 
Sbjct  421  NIRKLLWAAVVTT---LVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG  477

Query  474  KTIHLNLWGMVLAHLGIAITLGGIASDTLFSQELLTALKPQQTARLGDWQLHFDRVMPDL  533
                L+ WGMV AHLG+A+T+ GIA    +S E    +++ ++  + D ++ F  V    
Sbjct  478  TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDIT  537

Query  534  GSDWTAIVADIRLERNGQS-FTLHPALRHFTNPVTDTSETALKTTKAGQLYLVLGQQAED  592
            G++  + VA I + R+G++   LH+  R +  +    +E+A+    + +LY  LG++ ++
Sbjct  538  GPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDN  597

Query  593  GRWQIRAWWKPLVTLIWD  610
            G W +R   KP+V  IW 
Sbjct  598  GAWAVRLYYKPFVRWIWA  615

682) Za10_0083 in NC_013355


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  269 bits (1004),  Expect = 6e-73, Method: Compositional matrix adjust.
 Identities = 236/558 (43%), Positives = 373/558 (67%), Gaps = 12/558 (2%)

Query  62   FMRVDLSVTLVAENDHWAKPMLYRVAASWGNHEGSMLLWVTILSFCGALLALFGGKIDQK  121
            F+  D++V+ VA N +   P+ YRVAA+WG HEGS+LLWV ++S     +A+F+ ++   
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  122  llslalgsqaflalgffafllfVSNPFARLNPP-ATEGLGLNPLLQDPGLAFHPPTLYLG  180
            +++  L+  + +  GF+AF+LF S PFAR  P+ + EG +LNPLLQDPGL FHPP LY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  181  YVGLSVAFSFAVAALLTGKADRAFAKAMRIWVLGAWVFLTIGITAGSYWAYYELGWGGFW  240
            YVG+SVAF+FA+AALL+G+ D AF++  R W L+AWVFLT+GI  GS WAYYELGWGG W
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  241  FWDPVENAALMPWLAATALFHSVSVLAKRDSLRVWTLVLAVTAFSMSMIGTFLVRSGILV  300
            FWDPVENA++MPWLA+TAL+HS++V  +R +++ WTL+L++ AFS+ ++GTFLVRSG+LV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  301  SVHAFAVDPWRGSfilgllglyiggalalfalRIAKIHQGNHFILPSREAGLVLNNLFLG  360
            SVHAFA DP RG FIL+++ L  GG+L LFA+R  +++   +  L SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  361  VILAIVLIGTLYPLLAEMMNGEKLSVGAPYFNMIITPlalllcllMPFGTLLRWKQERWA  420
              + +VL+GTL PL+   +    +SVG P+FN ++T L + + LL+  G L+RW ++R  
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPR  420

Query  421  SLK---WPLLVGAGLFILTEVILA--LKGLFSTAPLASISLG--VAVMVGLLCLWPLLRQ  473
            +++   W+ +V +   ++  V+L+  L + + +    +++++  +AV+     +  + R 
Sbjct  421  NIRKLLWAAVVTT---LVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRG  477

Query  474  KTIHLNLWGMVLAHLGIAITLGGIASDTLFSQELLTALKPQQTARLGDWQLHFDRVMPDL  533
                L+ WGMV AHLG+A+T+ GIA    +S E    +++ ++  + D ++ F  V    
Sbjct  478  TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDIT  537

Query  534  GSDWTAIVADIRLERNGQS-FTLHPALRHFTNPVTDTSETALKTTKAGQLYLVLGQQAED  592
            G++  + VA I + R+G++   LH+  R +  +    +E+A+    + +LY  LG++ ++
Sbjct  538  GPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDN  597

Query  593  GRWQIRAWWKPLVTLIWD  610
            G W +R   KP+V  IW 
Sbjct  598  GAWAVRLYYKPFVRWIWA  615

683) Mesau_04933 in NC_019973


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  266 bits (996),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 246/557 (45%), Positives = 368/557 (67%), Gaps = 20/557 (3%)

Query  72   ENSHSLQPLIYKITGTWGNHEGSMLLWVLILTFFGALVAAFGSNLPATLRANVLAVQGTI  131
             NS++  P+ Y++++TWG HEGS+LLWVL+++     VA F+ ++PA + A VLAV G +
Sbjct  73   GNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMV  132

Query  132  GAAFFLFILVTSNPFIRLNPA-PIEGRDLNPILQDLGLAIHPPMLYLGYVGFSICFSFSV  190
             A+F+ FIL TS PF R  PA P+EGRDLNP+LQD GL +HPP+LY+GYVGFS+ F+F++
Sbjct  133  CAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAI  192

Query  191  AALIEGRIDASWARWVRPWTLVAWMFLTGGIAMGSYWAYYELGWGGFWFWDPVENASFMP  250
            AAL+ GR+D++ +R  RPWTL AW+FLT GI +GS WAYYELGWGG WFWDPVENASFMP
Sbjct  193  AALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMP  252

Query  251  WLAGTALLHSAIVMEKRSALKIWtlllailtfslsllgtflVRSGVLTSVHAFATDPTRG  310
            WLAGTALLHS  V E+R+++K WTLLL+I +FSL LLGTFLVRSGVL SVHAFA+DP+RG
Sbjct  253  WLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARG  312

Query  311  VFILCILTLFIGGSLALFALRASKLTAGGLFHPVSREGalvlnnlflttatatvlvgtlY  370
            +FIL ++ L  GGSL LFA+R+ ++ +       SRE+ L+ NN++L +A   VL+GTL 
Sbjct  313  MFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLL  372

Query  371  PLAVEAFSADKISVGAPFFNLTFAPLMVPLLVMVPFGPLLAWKRGDVFGVAQRLMaafaa  430
            PL    ++ + ISVG PFFN  F+ LMVP+ +++  GPL+ W R+    + + L AA  +
Sbjct  373  PLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVT  432

Query  431  allatlvtvlfIDgasvlaalgvglgvw-lilgalTDLATKAGVGNVAAPT---MVRRLV  486
            +L+ +++   ++++  +  +         + + A+++   + + G  ++ +   MV   +
Sbjct  433  TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHL  492

Query  487  GLPRSVFGTAFAHlglgltvlgivgtlCFGTEKILSMHAGETVEISGRTVRFVGLYPAQG  546
            GL+ ++ G AF++               ++ E+ + M+AG++V I +    F  +    G
Sbjct  493  GLAVTITGIAFSQN--------------YSVERDVRMRAGDSVTIHDYRFTFREVRDITG  538

Query  547  PNYSEDRGRFELIgvsgspvgevssAKRFYRVRQMTTTESGIKTLGLSQLYISLGDEGKD  606
            PNY  + + +  +   G P + + + KR+Y   +M  TE++I      +LY +LG+E  +
Sbjct  539  PNYRGGVALIG-VTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDN  597

Query  607  GSVVVRLWWKPLVTLIW  623
            G+  VRL  KP+V  IW
Sbjct  598  GAWAVRLYYKPFVRWIW  614

684) ZZ6_0082 in NC_018145


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  266 bits (994),  Expect = 4e-72, Method: Compositional matrix adjust.
 Identities = 236/554 (43%), Positives = 372/554 (68%), Gaps = 12/554 (2%)

Query  66   DLSVTLVAENDHWAKPMLYRVAASWGNHEGSMLLWVTILSFCGALLALFGGKIDQKllsl  125
            D++V+ VA N +   P+ YRVAA+WG HEGS+LLWV ++S     +A+F+ ++   +++ 
Sbjct  65   DFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVAR  124

Query  126  algsqaflalgffafllfVSNPFARLNPP-ATEGLGLNPLLQDPGLAFHPPTLYLGYVGL  184
             L+  + +  GF+AF+LF S PFAR  P+ + EG +LNPLLQDPGL FHPP LY+GYVG+
Sbjct  125  VLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGF  184

Query  185  SVAFSFAVAALLTGKADRSFAKAMRIWVLGAWVFLTIGITAGSYWAYYELGWGGFWFWDP  244
            SVAF+FA+AALL+G+ D +F++  R W L+AWVFLT+GI  GS WAYYELGWGG WFWDP
Sbjct  185  SVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDP  244

Query  245  VENAALMPWLAATALFHSVSVLAKRDSLRVWTLVLAVTAFSMSMIGTFLVRSGILVSVHA  304
            VENA++MPWLA+TAL+HS++V  +R +++ WTL+L++ AFS+ ++GTFLVRSG+LVSVHA
Sbjct  245  VENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHA  304

Query  305  FAVDPWRGSfilgllglyiggalalfalRIGKIHQGNHFILPSREAGLVLNNLFLGVILA  364
            FA DP RG FIL+++ L  GG+L LFA+R  +++   +  L SRE+ L+ NN++L   + 
Sbjct  305  FASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAML  364

Query  365  IVLIGTLYPLLAEMMNGEKLSVGAPYFNMIITPlalllcllMPFGTLLRWKQDRWASLK-  423
            +VL+GTL PL+   +    +SVG P+FN ++T L + + LL+  G L+RW +DR  +++ 
Sbjct  365  VVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRK  424

Query  424  --WPLLVGAGVFILTEVIL--VFKGLFSTSPLASISLG--IAVMTGLLCLWPLLRQKTIR  477
              W+ +V +   ++  V+L  ++ + + +    +++++  IAV++    +  + R     
Sbjct  425  LLWAAVVTT---LVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTS  481

Query  478  LNLWGMVLAHLGIAITLGGIASDTLFSQELLTALKPQQTARLGDWQLHFDRVMPDLGSDW  537
            L+ WGMV AHLG+A+T+ GIA    +S E    +++ ++  + D ++ F  V    G++ 
Sbjct  482  LSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNY  541

Query  538  TAIVADIRLERNGQS-FTLHPALRHFTNPVTDTSETALKTTKTGQLYLVLGQQDEDGRWQ  596
             + VA I + R+G++   LH+  R +  +    +E+A+    T +LY  LG++ ++G W 
Sbjct  542  RGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWA  601

Query  597  IRAWWKPLVTLIWD  610
            +R   KP+V  IW 
Sbjct  602  VRLYYKPFVRWIWA  615

685) BN69_0808 in NC_018485


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  265 bits (989),  Expect = 9e-72, Method: Compositional matrix adjust.
 Identities = 265/580 (46%), Positives = 380/580 (66%), Gaps = 19/580 (3%)

Query  47   FLFVALAYGALTYAHVVSDFSLVNVIENSHSLKPFIYKISGVWGNHEGSMLLWVLVLSLC  106
            F+ VA A+  L  A VV+DF++  V  NS++  P  Y++++ WG HEGS+LLWVL++S  
Sbjct  47   FICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGW  106

Query  107  GALIAVFSNAMPDRLRadalavqgllgaafllfillTSNPFARVAPA-PWEGRDLNPILQ  165
               +AVFS  +P  + A  LAV G++ A+FL FIL+TS PFAR  PA P EGRDLNP+LQ
Sbjct  107  TLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQ  166

Query  166  DPGLAIHPPLLYLGYVGFSIVFSFAAAALIGGRIDAGWARVIRPWTLFAWIALTLGIAMG  225
            DPGL +HPPLLY+GYVGFS+ F+FA AAL++GR+D++ +R  RPWTL AW+ LTLGI +G
Sbjct  167  DPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLG  226

Query  226  SYWAYYTLGWGGFWFWDPVENASLMPWIAGTALVHSAAVMEKREALKVWTiflailafsl  285
            S WAYY LGWGG WFWDPVENAS+MPW+AGTAL+HS AV E+R ++K WT++L+I AFSL
Sbjct  227  SAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSL  286

Query  286  sllGTFLVRSGVLTSVHAFASDPDRGVFILAILVFFIGGalalfalrasalPVGGLFAPI  345
             LLGTFLVRSGVL SVHAFASDP RG+FILA++V+  GG+L LFA+R+  +      A  
Sbjct  287  CLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALW  346

Query  346  SREGALVLNNLLLSACCATVVVGTLYPLALEAITGEKISVGAPFFNTVlipialplallM  405
            SRE+ L+ NN+LL A    V++GTL PL    +    ISVG PFFNT++  + +P+ALL+
Sbjct  347  SRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLL  406

Query  406  PIGQMLSWKRGDLTAALQRLRIAFIVGVLATAAFGAW-YGTPFLSIAAAGIAV-----YL  459
             +G ++ W R D    +++L  A +V  L  + + +W     +++++A G+A+      L
Sbjct  407  GVGPLVRWGR-DRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVL  465

Query  460  VVGALSDLVLrarggggrasfkrfagLPLSAFGTSIahagmgltllglaatgWGVETIVA  519
             V+   + V R+   +        A L L+   T+IA +              +VE  V 
Sbjct  466  AVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNY-----------SVERDVR  514

Query  520  MKPSSFYDVGPYQIGIDSVSPRQGPNYSEVYAVMAVRKDGATLATIEPAKRFYQARRMAR  579
            M+++    +  Y++ +  V    GPNY    A+++V ++G   A +++ KR+Y++ RM  
Sbjct  515  MRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVM  574

Query  580  SEAGIVTLGLGQVYAAIGESHEDGTIDARLYWKPLVTLIW  619
            +EA+I      ++YAA+GE  ++G+   RLY KP+V  IW
Sbjct  575  TEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

686) Meso_0899 in NC_008254


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  263 bits (983),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 265/568 (47%), Positives = 385/568 (68%), Gaps = 17/568 (2%)

Query  61   YVQSDFSVLNVWENSHSAKPLLFKITGTWGNHEGSMLLWvlilaffgalvaafgQNLPPT  120
            +V +DF+V  V  NS++  P+ +++++TWG HEGS+LLWVL+++     VA F++++P+ 
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  LRANVLAIQGliasafllfilfTSNPFIR-LERAPIEGRDLNPILQDIGLAIHPPLLYLG  179
            + A VLA+ G++ ++FL FILFTS PF R L   P+EGRDLNP+LQD GL +HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSISFSFAVAALIDGRLDAAWARWVRPWTLVAWAFLTGGIAMGSYWAYYELGWGGFW  239
            YVGFS++F+FA+AAL+ GRLD+A +R  RPWTL AW FLT GI +GS WAYYELGWGG W
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASLMPWLAGTALLHSAIVMEKRSALKIWTVllailtfslsllgtflVRSGVLT  299
            FWDPVENAS+MPWLAGTALLHS  V E+R+++K WT+LL+I +FSL LLGTFLVRSGVL 
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFATDPTRGVFILAILVFFIGGALALFAVRGASLAPGGLFHPISREGALVFNNLMLT  359
            SVH+FA+DP+RG+FILA++V+  GG+L LFAVRG  + +       SRE+ L+ NN++L 
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLM  360

Query  360  TAAATVLIGTLYPLLIEAISEDKISVGApffnltfvplflplllavpfgpllAWKRGDLP  419
            +A   VL+GTL PL+   ++ + ISVG PFFN  F  L +P+ L +  GPL+ W R D P
Sbjct  361  AAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR-DRP  419

Query  420  GALQRLQFafwaagaaaia--SYFLIDRanaaaalgiglglWLVFGALTDLAFKSGIGKV  477
              +++L  A   +        + +L D+  A +A+G++++ W     ++ LA   ++ +V
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACW-----IAVLAVAEAVQRV  474

Query  478  GPALALRRLSGLPLSMFGTCFAHAGLGLTVLGIVSVTALQAEKILTMQPGQSTEISGYTL  537
            + +      +  +LS  G   AH GL++T+ GI        E+ + M++G+S  I +Y +
Sbjct  475  SRG------TKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRF  528

Query  538  RFVDLRPFTGPNYTEDRAEFALGTTRGASLGELVSSKRLYTARGMPTTEAGIRTMGLSQL  597
             F ++R +TGPNY  + A +++ T +G + + L + KRLY +  M  TEA+I      +L
Sbjct  529  TFREVRDITGPNYRGGVALIGV-TRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  598  YVSIGDRTPAGL-VVRIWWKPFVTLIWA  624
            Y ++G+    G   VR+  KPFV  IWA
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIWA  615

687) cycK in NC_011144


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  257 bits (962),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 251/559 (45%), Positives = 371/559 (67%), Gaps = 16/559 (2%)

Query  65   SDFSVANVAANSHSQKPLLYRIAGAWGSHEGSMLLWClaltgfgaaaaglgrslprglrS  124
            +DF+VA VA+NS++Q P+ YR+A++WG+HEGS+LLW L ++G   A A ++R +P ++ +
Sbjct  64   NDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVA  123

Query  125  VTVATQGMLGVVFLAYTVFASNPLMR-LAEPPVEGRSLNPLLQDPALALHPPFLYAGYVG  183
              +A  GM+   FLA+ +F+S P+ R L+  PVEGR LNPLLQDP+L +HPP+LY GYVG
Sbjct  124  RVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVG  183

Query  184  MsvvfsfavaaLVEGRVDAAWARWVRPWTLAAWSFLTLGIMLGSFWAYYELGWGGWWFWD  243
             SV F+FA+AAL+ GR+D+A +R  RPWTLAAW FLTLGI+LGS WAYYELGWGGWWFWD
Sbjct  184  FSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWD  243

Query  244  PVENASFMPWlvaaallhsavvTEKRGALPGWTVFLALAAFTFSMLGAFLVRSGVLTSVH  303
            PVENASFMPWL ++ALLHS  VTE+R+++ +WT++L++ AF++ +LG+FLVRSGVL SVH
Sbjct  244  PVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVH  303

Query  304  AFAVDPTRGVLLLMILGVTAGAGFALFAWRAPSLPQGGVFAPVSRESalvlnnilltaat  363
            AFA DP+RG+++L ++ + +G+++ LFA R+  +      A  SRES L+ NN+LL AA 
Sbjct  304  AFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAM  363

Query  364  atvllgtlFPLIREAATGDAISVGPPYFNLTFTplmaallillpagpllaWKRGDARGVM  423
              VLLGTL+PL++     ++ISVG P+FN  FT LM ++ +LL  GPL+ W R+ +R + 
Sbjct  364  LVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIR  423

Query  424  QRlwlaalialgaglltialVSPRKalgaagvalgaw-liagalaEILERVRAFRAPASE  482
            + LW A + +L  ++L   L+  +    +A     A  +   A+AE ++RV    + ++ 
Sbjct  424  KLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRV----SRGTK  479

Query  483  SWRRLWGLPRGAWGMTLAHLGLGVFVLGAVFETTWKVEAAETLPIGGALDAGAYHVTLDA  542
            +    WG       M  AHLGL+V + G  F     VE    +  G+++    Y+ T+  
Sbjct  480  TSLSYWG-------MVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFRE  532

Query  543  IEAVEGPNYEAERGAVTVTRDGEVICRAAPERRLYTAGGQTTSEVGLCYRGMSHVYVVLG  602
            +  + GPNY +  + + VTR+GE      +E+RLY ++    +E ++      ++Y  LG
Sbjct  533  VRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALG  592

Query  603  ERRDGGPEPVWLVRAYWNP  621
            E  D G+   W VR Y +P
Sbjct  593  EELDNGA---WAVRLYYKP  608

688) Zymop_0062 in NC_015709


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  249 bits (929),  Expect = 5e-67, Method: Compositional matrix adjust.
 Identities = 236/546 (44%), Positives = 371/546 (68%), Gaps = 7/546 (1%)

Query  72   VAENDHIAKPFLYRLAASWGNHEGSMLLWVTIlslcgallallsKSVEPKllslalgaqg  131
            VA N +   P  YR+AA+WG HEGS+LLWV ++S     +A++S+ V + +++  L+  G
Sbjct  71   VAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMG  130

Query  132  slalgffafllfVSNPFSRlnpp-pleglglnpllQDPGLAFHPPTLYLGYVGLSVAFSF  190
             +  GF+AF+LF S PF+R  P+ P+EG +LNPLLQDPGL FHPP LY+GYVG+SVAF+F
Sbjct  131  MVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAF  190

Query  191  AVAALLQGKADPSFAKAMRPWVIGAWVFLTIGIAAGSYWAYYELGWGGFWFWDPVENAAL  250
            A+AALL G+ D++F++  RPW ++AWVFLT+GI  GS WAYYELGWGG WFWDPVENA++
Sbjct  191  AIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASF  250

Query  251  MPWLAATALFHSISVLAKRDALRVWTLVLAVTAFSMSMIGTFLVRSGILVSVHAFAVDPW  310
            MPWLA+TAL+HS++V  +R +++ WTL+L++ AFS+ ++GTFLVRSG+LVSVHAFA DP 
Sbjct  251  MPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPA  310

Query  311  RGSFIlgllglyiggalmlFALRIGKIHQGSQFNMPSREagliinnlllgvilavvligT  370
            RG FIL+++ L  GG+L+LFA+R  +++   +  + SRE+ L+ NN+LL   + VVL+GT
Sbjct  311  RGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGT  370

Query  371  LYPLFSEALTGDKLSVGPPYFNMIVSPLALILCLVMAFGPFFRWRQDHWSKIR---WPMV  427
            L PL    L  + +SVG P+FN + + L + + L+++ GP+ RW +D+  +IR   W+ V
Sbjct  371  LLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAV  430

Query  428  IGLLAFCLTEASLWGADISFAALSWIAFGIATATALLSLWPLFLQKKKLWHLPLSLWGMV  487
            +  L + +  +  W  +  + A++ ++ ++A   A+L++     +  +    +LS WGMV
Sbjct  431  VTTLVLSVLLP--WLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTSLSYWGMV  488

Query  488  MAHLGIALTLGGIASNDLFSKEVLTALEPGQQATLGPWQLHFNNVMPALGSDWSAIVADI  547
             AHLG+A+T+ GIA ++ +S E    + +G+  T+   ++ F +V    G++  + VA I
Sbjct  489  AAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALI  548

Query  548  TLERKGQS-VTLNPELRHFTNPVTDVSETALKTTRAGQLYLVLGQQGEDGRWQIRGWWKP  606
             + R G++   L++E R +  +   ++E+A+    + +LY  LG++ ++G W +R   KP
Sbjct  549  GVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKP  608

Query  607  MITLIW  612
             +  IW
Sbjct  609  FVRWIW  614

689) RM11_0379 in NC_018533


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  245 bits (915),  Expect = 7e-66, Method: Compositional matrix adjust.
 Identities = 254/627 (41%), Positives = 412/627 (66%), Gaps = 17/627 (2%)

Query  1    MLVELGHIFLAAAFAVSLMQAFLPALGVWWEDHSLMRTAVPftyitftllllsfliiVHA  60
            M+ E GH +L  A++V+L+ +  P  GV + D  +M +A  F+ + F  +  +F+++VHA
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   HMVSDFSVLNVVENSHSEKPMLYKITGVWGNHEGSMLLWVLSLAFFSTLMALFSQHLPEQ  120
             +V+DF+V  V  NS+++ P+ Y++++ WG HEGS+LLWVL ++  +  +A+FS+++P +
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  FKTLILVCQSWIISAFLVFVLFLSNPFLRINPP-ALQGNDLNPLLQDIALAIHPPLLYLG  179
            + + +L   + + ++FL F+LF S PF R  P+ +++G DLNPLLQD +L +HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  SVGFSLCFSFAVAALVMGHIDGRWAHWVRPWLLLAWCFLTLGIMVGSYWAYYELGWGGYW  239
             VGFS+ F+FA+AAL+ G++D+  ++  RPW L AW FLTLGI++GS WAYYELGWGG W
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENASFMPWLSGTAFLHSALVLEKRETLKSWtlflalltfslslMGTFLVRSGLLV  299
            FWDPVENASFMPWL+GTA+LHS  V E+R  +K+WTL+L++ +FSL L+GTFLVRSG+LV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFAIDPARGRAIlallffftggafflfalRVPILKAGRLFRPI-SREGFivlnnlll  358
            SVH+FA DPARG  ILA++ + TGG+++LFA+R   +++ R+  ++ SRE++++ NN+LL
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRS-RVNNALWSRESLLLGNNVLL  359

Query  359  ttitatvligtlYPYFIEALTGKKISVGAAFFNITCGPLMIlllllVPFGSMMVWKSGDF  418
             +    VL+GTL P     L    ISVG +FFN     LM+ + LL+  G+++ W  +  
Sbjct  360  MAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRP  419

Query  419  LAVFERLWvvcvlacvacFITFYATSLRDIFAALGIGLSVFVFLGSLADLWKKSGHHKLA  478
              +   LW   V + V   +         I+A  ++G+++   ++ LA      + ++++
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLE-DKIIAMTAVGMAMACWIAVLAV---AEAVQRVS  475

Query  479  LSVRFKRFIGLP-WSVFGAAMAHMGLAVTLFGIVCVATFAQERILTMHIGDRVTIAGKTI  537
             + +     +L+ W++ +   AH+GLAVT+ GI     ++ ER + M+ GD VTI +  +
Sbjct  476  RGTK----TSLSYWGMVA---AHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRF  528

Query  538  CFDKVHESAGPNYSAMEFNFTVYENKHAVRNVIASKRFYSSQNISTTEVGIQNHGLLSQL  597
             F  V++ +GPNY +    + V  + ++   + A KR+Y++  +  TE +I+  GL  +L
Sbjct  529  TFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDG-GLTRDL  587

Query  598  YIAPG-HIDDQGLVVHLWWKPYVICVW  623
            Y A G ++D+ +  V+L  KP+V  +W
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIW  614

690) Mesci_4875 in NC_014923


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  240 bits (894),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 260/560 (47%), Positives = 380/560 (68%), Gaps = 26/560 (4%)

Query  72   ENSHSLQPLIYKITGTWGNHEGSMLLWVLILTFFGALVAAFGSNLPATLRANVLAVQgai  131
             NS++  P+ Y++++TWG HEGS+LLWVL+++     VA F+ ++PA + A VLAV G +
Sbjct  73   GNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVARVLAVMGMV  132

Query  132  gaafflfilaTSNPFIRLNPA-PIEGRDLNPILQDLGLAIHPPFLYLGYVGFSICFSFSV  190
             A+F+ FIL TS PF R  PA P+EGRDLNP+LQD GL +HPP+LY+GYVGFS+ F+F++
Sbjct  133  CAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAI  192

Query  191  AALIEGRIDASWARWVRPWTLVAWMFLTGGIAMGSYWAYYELGWGGFWFWDPVENASFMP  250
            AAL+ GR+D++ +R  RPWTL AW+FLT GI +GS WAYYELGWGG WFWDPVENASFMP
Sbjct  193  AALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMP  252

Query  251  WLAGTALLHSAIVMEKRSALKIWtlllailtfslsllgtflVRSGVLTSVHAFATDPTRG  310
            WLAGTALLHS  V E+R+++K WTLLL+I +FSL LLGTFLVRSGVL SVHAFA+DP+RG
Sbjct  253  WLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARG  312

Query  311  VFILCILTLFIGGslalfalrasrlTTGGLFHPISREGalvlnnlflttatatvlvgtlY  370
            +FIL ++ L  GGSL LFA+R+ R+ +       SRE+ L+ NN++L +A   VL+GTL 
Sbjct  313  MFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLL  372

Query  371  PLAVEAFSADKISVGAPFFNLTfgplmvplllvvpfgpllAWKRGDVFAVAQRLMvafaa  430
            PL    ++ + ISVG PFFN  F  LMVP+ L++  GPL+ W R+    + + L  A  +
Sbjct  373  PLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVT  432

Query  431  allatlvtalfIDGGSV-FAALGVGLAVWLILGALTDLAVKSGFRTVATGI----MVRRL  485
            +L+ +++ + ++++  +  +A+G+++A W+ + A+++ AV+   R   T++    MV   
Sbjct  433  TLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAE-AVQRVSRGTKTSLSYWGMVAAH  491

Query  486  LGLPRSVFGTAFAHlglglttlgivgtlCFGTEKILSMHAGETVELSGHTLRFVGLYPAQ  545
            LGL+ ++ G AF++               ++ E+ + M+AG++V + +  + F  +    
Sbjct  492  LGLAVTITGIAFSQN--------------YSVERDVRMRAGDSVTIHDYRFTFREVRDIT  537

Query  546  GPNYSEDRGRFELIGVS--GSPVGEISSAKRFYPVRQMTTTESGIRTIGFSQLYISLGDE  603
            GPNY   RG   LIGV+  G P + + + KR+Y   +M  TE++I      +LY +LG+E
Sbjct  538  GPNY---RGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEE  594

Query  604  GKDGSVVVRLWWKPLVTLIW  623
              +G+  VRL  KP+V  IW
Sbjct  595  LDNGAWAVRLYYKPFVRWIW  614

691) cycK in NC_012846


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  239 bits (890),  Expect = 6e-64, Method: Compositional matrix adjust.
 Identities = 252/627 (41%), Positives = 398/627 (64%), Gaps = 18/627 (2%)

Query  1    MLVELGHIFLAAAFSVSLLGAFLPALGFWWRERLLMQTAVPLTYITFTLLLLSFLVIIYA  60
            M+ E GH +L  A++V+LL +  P  G  + +  +M +A  ++ + F  +  +F+V++ A
Sbjct  1    MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHA  60

Query  61   YVVSDFSVLNVVENSHSEKPMLYKITGVWGNHEGSMLLWVlslaffsalmaffsQHLPED  120
            +VV+DF+V  V  NS+++ P+ Y++++ WG HEGS+LLWVL ++  +  +A FS+++P D
Sbjct  61   FVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPAD  120

Query  121  FKTLVLICQSWITSAFLLFILFVSNPFLRVNPP-ALQGNGLNPLLQDIALAIHPPLLYLG  179
            + + VL   + + ++FL FILF S PF R  P+ +++G +LNPLLQD +L +HPPLLY+G
Sbjct  121  IVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMG  180

Query  180  YVGFSLCFSFAVAALIMGHVDRIWARGIRPWLLLSWCFLTLGIMVGSYWAYYELGWGGYW  239
            YVGFS+ F+FA+AAL+ G++D   +R  RPW L +W FLTLGI++GS WAYYELGWGG W
Sbjct  181  YVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW  240

Query  240  FWDPVENVSFMPWLSGTALLHSALVLEKREILKSWtlflalltfslslMGTFLVRSGLLV  299
            FWDPVEN SFMPWL+GTALLHS  V E+R  +K+WTL+L++ +FSL L+GTFLVRSG+LV
Sbjct  241  FWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLV  300

Query  300  SVHSFAVDPARGQailallffftgaafllfalRTPILKTERFFQPI-SREGFivlnnlll  358
            SVH+FA DPARG  ILA++ + TG+++LLFA+R   +++ R  +++ SRE++++ NN+LL
Sbjct  301  SVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRS-RVNNALWSRESLLLGNNVLL  359

Query  359  ttitatvligtlYPYFIEILTGQKISVGAAFFNLTCGplmvflllfvpfGTMMAWKRGDL  418
             +    VL+GTL P     L    ISVG +FFN     LMV + L++  G ++ W R+  
Sbjct  360  MAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRP  419

Query  419  LAVFERLWLVFVLVGIVCFII--FYETSLRDIFAVLGIGLSAFVFLGSLADLWGKSGYGK  476
              +   LW   V   ++  ++  + E  +  + AV G++++  + + ++A+         
Sbjct  420  RNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAV-GMAMACWIAVLAVAEA--------  470

Query  477  RAFSVRVKRFLGLPWSTFGAAIAHMGLGVTLLGIVCVASFGQERILIMNVGDRVTIADKT  536
                 RV R    + S  G   AH+GL+VT+ GI    +++ ER + M  GD VTI D  
Sbjct  471  ---VQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYR  527

Query  537  LHFDAVYEGVGSNYSAMEFYFKIYENKNIVGHVTASKRFYSSQNTSTTEVGLQNHGLSQL  596
            + F  V +  G+NY +    + +  + +  + + A KR+Y++     TE +++     +L
Sbjct  528  FTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDL  587

Query  597  YIVPGHTDNRGL-VVHIWWKPYVICIW  622
            Y   G+  + G   V++  KP+V  IW
Sbjct  588  YAALGEELDNGAWAVRLYYKPFVRWIW  614

692) cycK in NC_005956


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  237 bits (884),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 241/569 (43%), Positives = 371/569 (66%), Gaps = 16/569 (2%)

Query  58   VHAHIVSDFSVLNVVENSHSEKPMLYKIIGVWGNHEGSMLLWVLSLAFFSTLVALFSQHL  117
            VHA +V+DF+V  V  NS+++ P+ Y++ + WG HEGS+LLWVL ++  +  VA+FS+++
Sbjct  58   VHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQV  117

Query  118  PEQLKALILVCQSWMTSAFLLFILFMSNPFLRVNPP-ALQGKDLNPLLQDIALAIHPPLL  176
            P ++ A +L   + + ++FL FILF S PF R  P+ +++G+DLNPLLQD +L +HPPLL
Sbjct  118  PADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLL  177

Query  177  YLGYVGFSLCFSFAVAALIMGYVDRLWARWVRPWLLLAWCFLTLGIMVGSYWAYYELGWG  236
            Y+GYVGFS+ F+FA+AAL+ G +D   +R  RPW L AW FLTLGI++GS WAYYELGWG
Sbjct  178  YMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWG  237

Query  237  GYWFWDPVENVSFMPWLSGTALLHSALALEKRGILKswtlflsiltfslslMGTFLVRSG  296
            G WFWDPVEN SFMPWL+GTALLHS    E+R+ +K+WTL+LSI +FSL L+GTFLVRSG
Sbjct  238  GWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSG  297

Query  297  LLISVHSFALDPARGRAIlalllfftggalslfalRVPALTPGRFFQPI-SREGFiilnn  355
            +L+SVH+FA DPARG  ILA++++ TGG+L LFA+R   +  +R  +++ SRE++++ NN
Sbjct  298  VLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRV-RSRVNNALWSRESLLLGNN  356

Query  356  lllttitatvligtlYPYFIELLTGQKISVGADFFNLTCGPlmmlllllVPFGSMIAWKR  415
            +LL +    VL+GTL P     L    ISVG  FFN     LM+ + LL+  G+++ W R
Sbjct  357  VLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGR  416

Query  416  GDFLAVFERLWVVFALVAIVCFITFYVVSLRDIFAILGIGLSTFVFLGSLAGLWAKSGHR  475
            +    +   LW       ++  +   ++    I+A+ ++G++    ++ LA   A + +R
Sbjct  417  DRPRNIRKLLWAAVVTTLVLSVLLPWLLE-DKIIAMTAVGMAMACWIAVLAV--AEAVQR  473

Query  476  KIALLARFKRFIGLP-WSVFGAAIAHMGLGVTLFGIIYVATFGQERILIMHKGDMVTIAD  534
                ++R  +  +L+ W   G   AH+GL+VT+ GI +   ++ ER + M+ GD VTI D
Sbjct  474  ----VSRGTK-TSLSYW---GMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHD  525

Query  535  KTLHLNEVHDETGPNYSAIEFHFTIYENKNTVGNVTASKRFYPSQNTSTTEVGIQNHGLS  594
              + + EV+D TGPNY +    + +  + +  + + A KR+Y +     TE +I+     
Sbjct  526  YRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTR  585

Query  595  QLYIVPG-RIDERGLVLHIWWKPYIICVW  622
            +LY   G  +D+ +  +++  KP++  +W
Sbjct  586  DLYAALGEELDNGAWAVRLYYKPFVRWIW  614

693) cycK in NC_010161


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  232 bits (866),  Expect = 5e-62, Method: Compositional matrix adjust.
 Identities = 234/574 (41%), Positives = 372/574 (65%), Gaps = 16/574 (2%)

Query  60   SFLVMIYAHAVSDFSVLNVIENSHSEKPMLYKITGIWGNHEGSMLLWVLCLTFFSALMAF  119
            +F+V++ A  V+DF+V  V  NS+++ P+ Y++++ WG HEGS+LLWVL ++  +  +A 
Sbjct  53   AFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAV  112

Query  120  FSQDLPEDFKTLILICQSWITSAFLLFILFVSNPFLRVYPP-ALQGNDLNPLLQDIALAI  178
            FS+++P D+ + +L   + + ++FL FILF S PF R  P+ +++G DLNPLLQD +L +
Sbjct  113  FSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIF  172

Query  179  HPPLLYLGYVGFSLCFSFAIAALIIGHIDKIWARWVRPWLLLSWCFLTLGIMVGSYWAYY  238
            HPPLLY+GYVGFS+ F+FAIAAL+ G++D   +R  RPW L +W FLTLGI++GS WAYY
Sbjct  173  HPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYY  232

Query  239  ELGWGGYWFWDPVENVSFMPWLSGTALLHSALVLEKRGILKSWtlflalltfsfslMGTF  298
            ELGWGG WFWDPVEN SFMPWL+GTALLHS  V E+R+ +K+WTL+L++ +FS+ L+GTF
Sbjct  233  ELGWGGWWFWDPVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTF  292

Query  299  LVRSGLLVSVHSFAVDPARGQailailffftgaafllfalRIPLLRTESFFQPISREGFi  358
            LVRSG+LVSVH+FA DPARG  ILA++ + TG+++LLFA+R   +R+       SRE+++
Sbjct  293  LVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLL  352

Query  359  vlnnlllttttatvligtlYPYFIEMLTGQKISVGAAFFNLTCgplmllllflvpfgpmm  418
            + NN+LL ++   VL+GTL P     L    ISVG +FFN     LM+ + +L+  GP++
Sbjct  353  LGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLV  412

Query  419  AWKRGDFFAVFERLWFVFVLVATVCFILFYATSLRDI-LAVLGIGLSAFVFLGSLADLWG  477
             W R+    +   LW   V    +  +L      + I ++ +G++++  + + ++A+   
Sbjct  413  RWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQ  472

Query  478  KSGYGKKAFSVRVKRFLGLP-WSVFGAAMAHMGLGVTLFGIVCVASFGQERILTMNIGEW  536
            + + G K+         +L+ W++ +A   H+GL+VT+ GI    +++ ER + M  G+ 
Sbjct  473  RVSRGTKT---------SLSYWGMVAA---HLGLAVTITGIAFSQNYSVERDVRMRAGDS  520

Query  537  VTIADKTLHFDTVHNRFGSNYSAMEFRFKIYENKKIVGHVTASKRFYASQNTSTTEVGLQ  596
            VTI D  + F  V++  G+NY +    + +  +    + + A KR+Y +     TE +++
Sbjct  521  VTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAID  580

Query  597  NHGLSQLYIVPG-HFDNRGLVVHIWWKPYIICIW  629
                 +LY   G ++DN +  V++  KP++  IW
Sbjct  581  GGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIW  614

694) PC1_2428 in NC_012917


> NC_006905_P4|16|G9|62180824|YP_217241.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|-|8668..10599|ccmF|SC2254|cytochrome 
c-type biogenesis protein
Length=643

 Score =  232 bits (864),  Expect = 6e-62, Method: Compositional matrix adjust.
 Identities = 227/550 (42%), Positives = 366/550 (67%), Gaps = 18/550 (3%)

Query  66   DDFSVNYVAQHSHRDLPLGLKIAAVWGGHEGSlllwllclTGWSAAFAFRYRKATSDLFP  125
            +DF+V YVA +S+ +LP+  ++AA WG+HEGSLLLW+L ++GW+ A A   R+  +D+ +
Sbjct  64   NDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRQVPADIVA  123

Query  126  ltlavlaviatallvfivFFSDPFVRLFPP-AVAGRDLNPMLQHIGLILHPPLLYMGYGG  184
              LAV++++ +++L FI+F S+PF R +P+ +V GRDLNP+LQ+ GLI+HPPLLYMGY G
Sbjct  124  RVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVG  183

Query  185  LTVSaalalaalIHGEFTAPAAWICWRWTLPAWSLLTLGIILGSWWAYNELGWGGWWFWD  244
            ++V+ A+A+AAL+ G + ++ +++ + WTL+AW +LTLGI+LGS WAY ELGWGGWWFWD
Sbjct  184  FSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWD  243

Query  245  PVENASLLPWLTASALLHSLSVTRMRGIFRHWSlilalltfilcllgtliVRSGILVSVH  304
            PVENAS++PWL+++ALLHS++VT  R+ F+ W+L+L++ +F LCLLGT++VRSG+LVSVH
Sbjct  244  PVENASFMPWLAGTALLHSMAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVH  303

Query  305  AFALEHDRAVPLFILFACLSMAALAVYGWRAQLVRSAARFSGWSREIalllvlllfsava  364
            AFA +  R++ ++ +   ++ ++L +++ R++ VRS    + WSRE  LL   +L+ A  
Sbjct  304  AFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAM  363

Query  365  lvvllGTLYPMIYGLAGWGKISVGAPYFNRVllpfgglmllligVAAGGYWKRSARWPVR  424
            LVVLLGTL P++    G G ISVG P+FN ++  +     LL+GV++   W R   + +R
Sbjct  364  LVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIR  423

Query  425  RL--GITLAVGVVTSLILWPYgvavalaaglIGWVMAAQWLQPLS----------AIRHQ  472
            +L  +  ++  V++ L+ W       +A   +G  MA  W+  L+          + +  
Sbjct  424  KLLWAAVVTTLVLSVLLPW-LLEDKIIAMTAVGMAMAC-WIAVLAVAEAVQRVSRGTKTS  481

Query  473  LP---ALLAHTGVALFALGIVFSAGSKQEISANVGQGEQVTLGDYHFRFLQLDLVAAQNY  529
            L+    + AH G+A+   GI FS     E    +  G+ VT+ DY+F F ++  +++ NY
Sbjct  482  LSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNY  541

Query  530  TAEQAVIAIYRGDSPIARVMPERRYYNARKQQMIEPGIAWGPIREWYAVMGEKTGENRYA  589
             +  A+I++ R + P A + +E+R YN+ +  M E++I  G  R+ YA +GE  ++   A
Sbjct  542  RGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWA  601

Query  590  MRFYVQTGVR  599
            +R+Y +  VR
Sbjct  602  VRLYYKPFVR  611