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PAthogenisity Island DataBase (PAI DB)

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Homologs of hrcQb gene of AF232004

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrcQb
( NP_791223.1 )

type III secretion protein HrcQb

NC_004578
(Pseudomonas syringae DC3000)

2e-26

100

2) hrcQb
( YP_273545.1 )

type III secretion component protein HrcQb

NC_005773
(Pseudomonas syringae 1448A)

2e-23

3) HrcQb
( YP_234301.1 )

type III secretion protein HrcQb

NC_007005
(Pseudomonas syringae B728a)

3e-22

• Sequence Alignments

1) hrcQb in NC_004578


> AF232004|17|G16|11276515|AAG33883.1|Pseudomonas_syringae_pv._tomato_DC3000|+|18654..19067|hrcQb|-|HrcQb
Length=137

 Score =  111 bits (405),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 137/137 (100%), Positives = 137/137 (100%), Gaps = 0/137 (0%)

Query  1    MSTEDLYQDDVESLEDYDDETAeqeheheheqqWaepddeseyaeaepdddeqeeqeeqq  60
            MSTEDLYQDDVESLEDYDDETAEQEHEHEHEQQWAEPDDESEYAEAEPDDDEQEEQEEQQ
Sbjct  1    MSTEDLYQDDVESLEDYDDETAEQEHEHEHEQQWAEPDDESEYAEAEPDDDEQEEQEEQQ  60

Query  61   apSGLDSLALDLTLRCGelrltlaelrrlDAGTILEVGGVAPGYATLCHGERVVAEGELV  120
            APSGLDSLALDLTLRCGELRLTLAELRRLDAGTILEVGGVAPGYATLCHGERVVAEGELV
Sbjct  61   APSGLDSLALDLTLRCGELRLTLAELRRLDAGTILEVGGVAPGYATLCHGERVVAEGELV  120

Query  121  DVDGRLGLQITRLAAQP  137
            DVDGRLGLQITRLAAQP
Sbjct  121  DVDGRLGLQITRLAAQP  137

2) hrcQb in NC_005773


> AF232004|17|G16|11276515|AAG33883.1|Pseudomonas_syringae_pv._tomato_DC3000|+|18654..19067|hrcQb|-|HrcQb
Length=137

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 93/138 (68%), Positives = 116/138 (85%), Gaps = 11/138 (7%)

Query  1    MSTEDLYQEDVEMLDDYEDPSTEQH--------WSEEDGEPSGYATAEPDDHAAQEEQDE  52
            MSTEDLYQ+DVE L+DY+D ++EQ+        W+E D+E S YA AEPDD+  +E++++
Sbjct  1    MSTEDLYQDDVESLEDYDDETAEQEHEHEHEQQWAEPDDE-SEYAEAEPDDDEQEEQEEQ  59

Query  53   P--PALDSLALDLTLRCGelrltlaelrrlDAGTILEVTGISPGHATLCHGEQVVAEGEL  110
               ++LDSLALDLTLRCGELRLTLAELRRLDAGTILEV G++PG ATLCHGE+VVAEGEL
Sbjct  60   QAPSGLDSLALDLTLRCGELRLTLAELRRLDAGTILEVGGVAPGYATLCHGERVVAEGEL  119

Query  111  VDVEGRLGLQITRLVTRS  128
            VDV+GRLGLQITRL +++
Sbjct  120  VDVDGRLGLQITRLAAQP  137

3) HrcQb in NC_007005


> AF232004|17|G16|11276515|AAG33883.1|Pseudomonas_syringae_pv._tomato_DC3000|+|18654..19067|hrcQb|-|HrcQb
Length=137

 Score = 97.8 bits (352),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 87/137 (64%), Positives = 111/137 (82%), Gaps = 5/137 (3%)

Query  1    MSTEDLYQDDVEMLDDYEEPVPEQADQQPHDDEHAE--QAFGYADEPEHEKQSGDHHESP  58
            MSTEDLYQDDVE L+DY++  +EQ +++ H+++ AE  +   YA+   ++ +  +++E  
Sbjct  1    MSTEDLYQDDVESLEDYDDETAEQEHEHEHEQQWAEPDDESEYAEAEPDDDEQEEQEEQQ  60

Query  59   M---LDSLELDLTLRCGelrltlaelrrlDAGTILEVSGIAPGHATLCHGEQVVAEGELV  115
                LDSL LDLTLRCGELRLTLAELRRLDAGTILEV+G+APG ATLCHGE+VVAEGELV
Sbjct  61   APSGLDSLALDLTLRCGELRLTLAELRRLDAGTILEVGGVAPGYATLCHGERVVAEGELV  120

Query  116  DVEGRLGLQITRLVARS  132
            DV+GRLGLQITRL A++
Sbjct  121  DVDGRLGLQITRLAAQP  137