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Homologs of hopM1 gene of NC_004578_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hopM1
( NP_791202.1 )

type III effector HopM1

NC_004578
(Pseudomonas syringae DC3000)

0.0

100

2) Psyr_1186
( YP_234278.1 )

type III effector HopM1

NC_007005
(Pseudomonas syringae B728a)

0.0

• Sequence Alignments

1) hopM1 in NC_004578


> NC_004578_P1|17|G12|28868583|NP_791202.1|Pseudomonas_syringae_pv._tomato_str._DC3000|+|9067..11205|hopM1|PSPTO_1375|type 
III effector HopM1
Length=712

 Score = 1076 bits (4081),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 712/712 (100%), Positives = 712/712 (100%), Gaps = 0/712 (0%)

Query  1    MISSRIGGAGGVELSRVNQQHDTVPAQTAHPNAVTAGMNPPLTPDQSGSHATESSSAGAA  60
            MISSRIGGAGGVELSRVNQQHDTVPAQTAHPNAVTAGMNPPLTPDQSGSHATESSSAGAA
Sbjct  1    MISSRIGGAGGVELSRVNQQHDTVPAQTAHPNAVTAGMNPPLTPDQSGSHATESSSAGAA  60

Query  61   RLNVAARHTQLLQAFKAEHGTAPVSGAPMISSRAALLIGSLLQAEPLPFEVMAEKLSPER  120
            RLNVAARHTQLLQAFKAEHGTAPVSGAPMISSRAALLIGSLLQAEPLPFEVMAEKLSPER
Sbjct  61   RLNVAARHTQLLQAFKAEHGTAPVSGAPMISSRAALLIGSLLQAEPLPFEVMAEKLSPER  120

Query  121  YQLKQFQGSDLQQRLEKFAQPGQIPDKAEVGQLIKGFAQSVADQLEHFQLMHDASPATVG  180
            YQLKQFQGSDLQQRLEKFAQPGQIPDKAEVGQLIKGFAQSVADQLEHFQLMHDASPATVG
Sbjct  121  YQLKQFQGSDLQQRLEKFAQPGQIPDKAEVGQLIKGFAQSVADQLEHFQLMHDASPATVG  180

Query  181  QHAKADKATLAVSQTALGEYAGRASKAIGEGLSNSIASLDEHISALDLTLQDAEQGNKES  240
            QHAKADKATLAVSQTALGEYAGRASKAIGEGLSNSIASLDEHISALDLTLQDAEQGNKES
Sbjct  181  QHAKADKATLAVSQTALGEYAGRASKAIGEGLSNSIASLDEHISALDLTLQDAEQGNKES  240

Query  241  LHADRQALVDAKTTLVGLHADFVKSPEAKRLASVAAHTQLDNVVSDLVTARNTVGGWKGA  300
            LHADRQALVDAKTTLVGLHADFVKSPEAKRLASVAAHTQLDNVVSDLVTARNTVGGWKGA
Sbjct  241  LHADRQALVDAKTTLVGLHADFVKSPEAKRLASVAAHTQLDNVVSDLVTARNTVGGWKGA  300

Query  301  GPIVAAAVPQFLSSMTHLGYVRLSTSDKLRDTIPETSSDANMLKASIIGMVAGIAHETVN  360
            GPIVAAAVPQFLSSMTHLGYVRLSTSDKLRDTIPETSSDANMLKASIIGMVAGIAHETVN
Sbjct  301  GPIVAAAVPQFLSSMTHLGYVRLSTSDKLRDTIPETSSDANMLKASIIGMVAGIAHETVN  360

Query  361  SVVKPMFQAALQKTGLNERLNMVPMKAVDTNTVIPDPFELKSEHGELVKKTPEEVAQDKA  420
            SVVKPMFQAALQKTGLNERLNMVPMKAVDTNTVIPDPFELKSEHGELVKKTPEEVAQDKA
Sbjct  361  SVVKPMFQAALQKTGLNERLNMVPMKAVDTNTVIPDPFELKSEHGELVKKTPEEVAQDKA  420

Query  421  FVKSERALLNQKKVQGSSTHPVGELMAYSAFGGSQAVRQMLNDVHQINGQTLSARalasg  480
            FVKSERALLNQKKVQGSSTHPVGELMAYSAFGGSQAVRQMLNDVHQINGQTLSARALASG
Sbjct  421  FVKSERALLNQKKVQGSSTHPVGELMAYSAFGGSQAVRQMLNDVHQINGQTLSARALASG  480

Query  481  fggavsassQTLLQLKSNYVDPQGRKIPVFTPDRAESdlkkdllkgmdlREPSVRTTFYS  540
            FGGAVSASSQTLLQLKSNYVDPQGRKIPVFTPDRAESDLKKDLLKGMDLREPSVRTTFYS
Sbjct  481  FGGAVSASSQTLLQLKSNYVDPQGRKIPVFTPDRAESDLKKDLLKGMDLREPSVRTTFYS  540

Query  541  KALSGIQSSALTSALPPVTAQAEGASGTLSAGAILRNMALAATGSVSYLSTLYTNQSVTa  600
            KALSGIQSSALTSALPPVTAQAEGASGTLSAGAILRNMALAATGSVSYLSTLYTNQSVTA
Sbjct  541  KALSGIQSSALTSALPPVTAQAEGASGTLSAGAILRNMALAATGSVSYLSTLYTNQSVTA  600

Query  601  eakalkaagmggaTPMLDRTETALNNIRHPNRESLPHTFQKSTLSGIPRVAENAYHMGRG  660
            EAKALKAAGMGGATPMLDRTETALNNIRHPNRESLPHTFQKSTLSGIPRVAENAYHMGRG
Sbjct  601  EAKALKAAGMGGATPMLDRTETALNNIRHPNRESLPHTFQKSTLSGIPRVAENAYHMGRG  660

Query  661  ALQLPTQMAVDTVRVVDEGVLNAVASAREALKQPTKDDDALRALEEGLLDPR  712
            ALQLPTQMAVDTVRVVDEGVLNAVASAREALKQPTKDDDALRALEEGLLDPR
Sbjct  661  ALQLPTQMAVDTVRVVDEGVLNAVASAREALKQPTKDDDALRALEEGLLDPR  712

2) Psyr_1186 in NC_007005


> NC_004578_P1|17|G12|28868583|NP_791202.1|Pseudomonas_syringae_pv._tomato_str._DC3000|+|9067..11205|hopM1|PSPTO_1375|type 
III effector HopM1
Length=712

 Score =  752 bits (2844),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 464/715 (65%), Positives = 607/715 (85%), Gaps = 8/715 (1%)

Query  1    MIGTRVGGSGSTEIVQANQPQPSAAVAQAHPHAVSPSSNPPLTasqsaaqapessaagaa  60
            MI++R+GG+G+ E+ + NQ + + +   AHP+AV+++ NPPLT+ QS+++A ESS+AGAA
Sbjct  1    MISSRIGGAGGVELSRVNQQHDTVPAQTAHPNAVTAGMNPPLTPDQSGSHATESSSAGAA  60

Query  61   RLPVAPRHLPTLEKFRAEQPTVQGTSTPTISANAALLIGSLLQSEKLPFEVMAARLSPER  120
            RL VA+RH   L+ F+AE+ T   +++P IS+ AALLIGSLLQ+E LPFEVMA +LSPER
Sbjct  61   RLNVAARHTQLLQAFKAEHGTAPVSGAPMISSRAALLIGSLLQAEPLPFEVMAEKLSPER  120

Query  121  YALQQFHGSDLQQMLGRFAEPGHLPGKAETEQLIKGFARSLADQLEHFQLMHDATAEAFG  180
            Y L+QF+GSDLQQ L +FA+PG++P+KAE  QLIKGFA+S+ADQLEHFQLMHDA++ + G
Sbjct  121  YQLKQFQGSDLQQRLEKFAQPGQIPDKAEVGQLIKGFAQSVADQLEHFQLMHDASPATVG  180

Query  181  PGGLRDRNTLAVSQAALGEYAGRASKSIEAGLNHSLAVLDERIAALDSQLEGATEDSRPV  240
              +  D+ TLAVSQ+ALGEYAGRASK+I  GL++S+A LDE+I+ALD  L++A ++++  
Sbjct  181  QHAKADKATLAVSQTALGEYAGRASKAIGEGLSNSIASLDEHISALDLTLQDAEQGNKES  240

Query  241  LLMDRQALETARAMLSDLHVDFCKSPEAKRLSAVAAHTQMDALIDKLNVDRSSVGGWKGI  300
            L  DRQAL  A++ L +LH DF KSPEAKRL++VAAHTQ+D ++  L   R++VGGWKG 
Sbjct  241  LHADRQALVDAKTTLVGLHADFVKSPEAKRLASVAAHTQLDNVVSDLVTARNTVGGWKGA  300

Query  301  GPIVAAAVPQFMVSMLHLGYIRTATSDAMKDAVPEKSADASMKRALAVGLTAGVAHEGVT  360
            GPIVAAAVPQF+ SM HLGY+R +TSD ++D++PE S+DA+M +A  +G+ AG+AHE V 
Sbjct  301  GPIVAAAVPQFLSSMTHLGYVRLSTSDKLRDTIPETSSDANMLKASIIGMVAGIAHETVN  360

Query  361  NLLKPMVQAGFQKAGLNERLNMVPLKGIDTDSVIPDPFELKNDNGALVRKTPEEAAEDKA  420
            +++KPM QA++QK+GLNERLNMVP+K++DT++VIPDPFELK+++G LV+KTPEE A+DKA
Sbjct  361  SVVKPMFQAALQKTGLNERLNMVPMKAVDTNTVIPDPFELKSEHGELVKKTPEEVAQDKA  420

Query  421  FVASERAVLNQKKVQVSSTHPLGEMIPYGAFGGGQAVRQMLNDFNLLNGQTLSARAVTSG  480
            FV SERA+LNQKKVQ SSTHP+GE+++Y+AFGG+QAVRQMLND + +NGQTLSARA++SG
Sbjct  421  FVKSERALLNQKKVQGSSTHPVGELMAYSAFGGSQAVRQMLNDVHQINGQTLSARALASG  480

Query  481  IAGAISATTQTIAQLNSTYVDPRGRKIPVFTPDRANadlgkdlakgldlREPAVRTAFYS  540
            ++GA+SA++QT+ QL+S YVDP+GRKIPVFTPDRA++DL KDL KG+DLREP+VRT+FYS
Sbjct  481  FGGAVSASSQTLLQLKSNYVDPQGRKIPVFTPDRAESDLKKDLLKGMDLREPSVRTTFYS  540

Query  541  KAVSGVQSAALNGALPSVAVQPQGASGTLSAGNIMRNMALAATGSVSYLSTLYANQSVTA  600
            KA+SG+QS+AL +ALP+V+ Q++GASGTLSAG I+RNMALAATGSVSYLSTLY+NQSVTA
Sbjct  541  KALSGIQSSALTSALPPVTAQAEGASGTLSAGAILRNMALAATGSVSYLSTLYTNQSVTA  600

Query  601  EAKALKEAGMGGATPMVARTETALSNIRHPDRASLPHTFQPDTLGGVPRAVENAYHMARG  660
            EAKALK AGMGGATPM+ RTETAL+NIRHP+R SLPHTFQ  TL+G+PR  ENAYHM+RG
Sbjct  601  EAKALKAAGMGGATPMLDRTETALNNIRHPNRESLPHTFQKSTLSGIPRVAENAYHMGRG  660

Query  661  ALQLPTQvvvdtvrvvedgvASGVSSLRDAHKPAETSSPTADDAAAVELTAMEEG  715
            ALQLPTQ+ VDTVRVV++GV ++V+S R+A K      PT DD A   L A+EEG
Sbjct  661  ALQLPTQMAVDTVRVVDEGVLNAVASAREALKQ-----PTKDDDA---LRALEEG  707