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PAthogenisity Island DataBase (PAI DB)

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Homologs of hrpP gene of AY597278

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrpP
( YP_273547.1 )

type III secretion protein HrpP

NC_005773
(Pseudomonas syringae 1448A)

3e-49

2) hrpP
( NP_791225.1 )

type III secretion protein HrpP

NC_004578
(Pseudomonas syringae DC3000)

2e-45

3) Psyr_1211
( YP_234303.1 )

type III secretion protein HrpP

NC_007005
(Pseudomonas syringae B728a)

3e-43

• Sequence Alignments

1) hrpP in NC_005773


> AY597278|19|G19|51103051|AAT96197.1|Pseudomonas_viridiflava_PNA3.3a|+|18906..19499|hrpP|-|HrpP
Length=197

 Score =  187 bits (694),  Expect = 3e-49, Method: Compositional matrix adjust.
 Identities = 118/198 (60%), Positives = 151/198 (77%), Gaps = 9/198 (4%)

Query  1    MTAPIKHPAKAPTAP----PVVHAT--QPSAPAQ--RAPDKADDKPPAFGSTTRTDMPKV  52
            M+++IKH++KAP +P      VH +   P  P Q  R P  + +K  A G+  R D    
Sbjct  1    MSTAIKHAPKAPPTPQRQDTEVHEAPVSPRRPVQSCRVPAGPVEKRLASGGLGRGDSLSG  60

Query  53   RFAQNRSATETPESADGLFFSQLLIPQVGEEPDQQGFGGSSIALPAHAENVPTQLIDELA  112
            R + +R   + P SADGLFFSQLLI  VGEEPD Q+F+G+S+ L+A +E +PTQLIDELA
Sbjct  61   R-SSSRFLEDDPISADGLFFSQLLILPVGEEPDAQSFAGGSLDLSAKTEPMPTQLIDELA  119

Query  113  QRLPEQPAGPLAFTLLMPSLGTVRVNAEKTEHRWSIQLGFARRDVLKRLQGHTGACRDSL  172
            QRLPEQP+GPL FTLLMP+LG VRVNAEKT++RWSIQ+GF+RRDVLKR++GH+ ACRD+L
Sbjct  120  QRLPEQPPGPLNFTLLMPNLGKVRVNAEKTDNRWSIQVGFSRRDVLKRVNGHSRACRDAL  179

Query  173  SRALGHDVELDLHEDLAA  190
            S+ALGHDV+LD+HEDL A
Sbjct  180  SQALGHDVDLDFHEDLQA  197

2) hrpP in NC_004578


> AY597278|19|G19|51103051|AAT96197.1|Pseudomonas_viridiflava_PNA3.3a|+|18906..19499|hrpP|-|HrpP
Length=197

 Score =  175 bits (647),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 104/155 (68%), Positives = 137/155 (89%), Gaps = 1/155 (0%)

Query  35   EKRPASGGLGRGDVQTSRSVLSKSLQDTPMSADGMFFSQLLVPPVSAEPgqqgfggggIA  94
            EKR ASGGLGRGD  ++RS  S+ L+D P+SADG+FFSQLL+ PV+ EP+ Q+F+GG++ 
Sbjct  44   EKRLASGGLGRGDSLSGRSS-SRFLEDDPISADGLFFSQLLILPVGEEPDAQSFAGGSLD  102

Query  95   FPVRAEQVPTQLIDELAQRLPDQPDGPLSFTLLMPSLGSVRVNANKTENRWSVQLGFARR  154
            ++ ++E +PTQLIDELAQRLP+QP GPL+FTLLMP+LG VRVNA+KT+NRWS+Q+GF+RR
Sbjct  103  LSAKTEPMPTQLIDELAQRLPEQPPGPLNFTLLMPNLGKVRVNAEKTDNRWSIQVGFSRR  162

Query  155  DVLKRLSAHTGACRDSLSQALGQDVELDMHEDLSA  189
            DVLKR+++H+ ACRD+LSQALG+DV+LD HEDL A
Sbjct  163  DVLKRVNGHSRACRDALSQALGHDVDLDFHEDLQA  197

3) Psyr_1211 in NC_007005


> AY597278|19|G19|51103051|AAT96197.1|Pseudomonas_viridiflava_PNA3.3a|+|18906..19499|hrpP|-|HrpP
Length=197

 Score =  167 bits (619),  Expect = 3e-43, Method: Compositional matrix adjust.
 Identities = 101/168 (61%), Positives = 135/168 (81%), Gaps = 1/168 (0%)

Query  23   RALPSLRQPDRSDDQPPAFAGAPRGDVQKVRFALNRSVTDSPMSADGMFFSQLLIPQVGE  82
            R++ S R P  + ++  A +G  RGD    R + +R + D P+SADG+FFSQLLI  VGE
Sbjct  31   RPVQSCRVPAGPVEKRLASGGLGRGDSLSGRSS-SRFLEDDPISADGLFFSQLLILPVGE  89

Query  83   EPDQQGFGGSGVAFSAQSENVPTQLIDELAQRLPDQPDGPLAFSLLMPNLGSVRVNASKS  142
            EPD Q+F+G+++ +SA++E +PTQLIDELAQRLP+QP GPL F+LLMPNLG VRVNA K+
Sbjct  90   EPDAQSFAGGSLDLSAKTEPMPTQLIDELAQRLPEQPPGPLNFTLLMPNLGKVRVNAEKT  149

Query  143  ENRWSIQLGFGRRDVLKRLQGQVGACRDSLAQALGQDVELDMHEDFTA  190
            +NRWSIQ+GF+RRDVLKR++G+  ACRD+L+QALG+DV+LD HED+ A
Sbjct  150  DNRWSIQVGFSRRDVLKRVNGHSRACRDALSQALGHDVDLDFHEDLQA  197