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Homologs of int gene of EF010993

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) int
( YP_008485826.1 )

mobile element-associated integrase, putative

NC_022222
(Staphylococcus aureus 6850)

3e-171

2) SAT0131_02174
( YP_005753291.1 )

Integrase

NC_017347
(Staphylococcus aureus T0131)

7e-171

3) SAB1912
( YP_417371.1 )

integrase

NC_007622
(Staphylococcus aureus RF122)

1e-167

4) SAOV_2065
( YP_005737508.1 )

integrase

NC_017337
(Staphylococcus aureus ED133)

1e-167

5) int
( YP_001442603.1 )

hypothetical protein

NC_009782
(Staphylococcus aureus Mu3)

3e-165

6) int
( NP_372552.1 )

integrase

NC_002758
(Staphylococcus aureus Mu50)

3e-165

7) int
( NP_375136.1 )

hypothetical protein

NC_002745
(Staphylococcus aureus N315)

3e-165

8) int
( YP_252918.1 )

hypothetical protein

NC_007168
(Staphylococcus haemolyticus JCSC1435)

2e-158

9) Sca_1539
( YP_002634629.1 )

putative integrase

NC_012121
(Staphylococcus carnosus TM300)

1e-122

10) BTF1_27280
( YP_006613538.1 )

integrase

NC_018508
(Bacillus thuringiensis HD-789)

2e-74

11) GC56T3_0230
( YP_003669876.1 )

integrase

NC_014206
(Geobacillus sp. C56-T3)

3e-71

12) GTCCBUS3UF5_2700
( YP_004980696.1 )

integrase

NC_016593
(Geobacillus thermoleovorans CCB_US3_UF5)

3e-71

13) ydcL
( YP_008076802.1 )

putative phage integrase YdcL

NC_021362
(Bacillus licheniformis 9945A)

5e-50

• Sequence Alignments

1) int in NC_022222


> EF010993|2|G1|116282493|ABJ97306.1|Staphylococcus_aureus_RN3984|-|87..1259|int|-|integrase
Length=390

 Score =  594 bits (2243),  Expect = 3e-171, Method: Compositional matrix adjust.
 Identities = 389/390 (99%), Positives = 389/390 (99%), Gaps = 0/390 (0%)

Query  1    MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAPS  60
            MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAPS
Sbjct  1    MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAPS  60

Query  61   TSTFKQVADDWISQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISA  120
            TSTFKQVADDWISQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISA
Sbjct  61   TSTFKQVADDWISQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISA  120

Query  121  QYSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKD  180
            QYSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKD
Sbjct  121  QYSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKD  180

Query  181  ELFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFEnntinitktyynpn  240
            ELFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPN
Sbjct  181  ELFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPN  240

Query  241  nnkkQFQILTPKTESSIGKISVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYP  300
            NNKKQFQILTPKTESSIGKISVDPHVIKLLKNYK DVQDTWKNELYVDNNFVFTDVNGYP
Sbjct  241  NNKKQFQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYP  300

Query  301  LVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTM  360
            LVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTM
Sbjct  301  LVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTM  360

Query  361  NIYAKITNSYKKDASQKFSKLMENVSKDLF  390
            NIYAKITNSYKKDASQKFSKLMENVSKDLF
Sbjct  361  NIYAKITNSYKKDASQKFSKLMENVSKDLF  390

2) SAT0131_02174 in NC_017347


> EF010993|2|G1|116282493|ABJ97306.1|Staphylococcus_aureus_RN3984|-|87..1259|int|-|integrase
Length=390

 Score =  593 bits (2238),  Expect = 7e-171, Method: Compositional matrix adjust.
 Identities = 388/390 (99%), Positives = 389/390 (99%), Gaps = 0/390 (0%)

Query  1    MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAPS  60
            MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAPS
Sbjct  1    MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAPS  60

Query  61   TSTFKQVADDWISQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISA  120
            TSTFKQVADDWISQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISA
Sbjct  61   TSTFKQVADDWISQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISA  120

Query  121  QYSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKD  180
            QYSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKD
Sbjct  121  QYSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKD  180

Query  181  ELFQFLEVAKNHHSPQNSFELFCTLAYTGMRAGELLALKWSDIDFEnntinitktyynpn  240
            ELFQFLEVAKNHHSPQNSFE+FCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPN
Sbjct  181  ELFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPN  240

Query  241  nnkkQFQILTPKTESSIGKISVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYP  300
            NNKKQFQILTPKTESSIGKISVDPHVIKLLKNYK DVQDTWKNELYVDNNFVFTDVNGYP
Sbjct  241  NNKKQFQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYP  300

Query  301  LVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTM  360
            LVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTM
Sbjct  301  LVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTM  360

Query  361  NIYAKITNSYKKDASQKFSKLMENVSKDLF  390
            NIYAKITNSYKKDASQKFSKLMENVSKDLF
Sbjct  361  NIYAKITNSYKKDASQKFSKLMENVSKDLF  390

3) SAB1912 in NC_007622


> EF010993|2|G1|116282493|ABJ97306.1|Staphylococcus_aureus_RN3984|-|87..1259|int|-|integrase
Length=390

 Score =  582 bits (2198),  Expect = 1e-167, Method: Compositional matrix adjust.
 Identities = 375/390 (97%), Positives = 384/390 (99%), Gaps = 0/390 (0%)

Query  1    MASYEKRGSTWRYRISLGKDVKTGKYKYISNSGFKRKSDAKHHAEMVERQLRTGEYIAPS  60
            MASYEKRG+TWRYRISLGKD  TGKYKYISNSGFKRKSDAKHHAEMVERQLR G+YIAPS
Sbjct  1    MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAPS  60

Query  61   TSTFQQVADEWLSQYANEVKVSSVRAREKAIHHAIERFNNKPIQTINKHEYQRFVNDISA  120
            TSTF+QVAD+W+SQYANEVKVSSVRAREKAI+HAIERFNNKPIQTINKHEYQRFVNDISA
Sbjct  61   TSTFKQVADDWISQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISA  120

Query  121  QYSKNYVDSIITSTNMIFKYAYDMKLIRIMPSEDIKRPKKKTSVEELEDTEIHKKFLEKD  180
            QYSKNYVDSII+STNMIFKYAYDMKLIRIMPSE+IKRPKKK SVEELEDTEIHKKFLEKD
Sbjct  121  QYSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKD  180

Query  181  ELFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFEnntinitktyynpn  240
            ELFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPN
Sbjct  181  ELFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPN  240

Query  241  nnkkQFQILTPKTESSIGKIPVDPHVIKLLKNYKVDVQDTWKNGLYVDNNFVFTDVNGYP  300
            NNKKQFQILTPKTESSIGKI+VDPHVIKLLKNYK DVQDTWKN LYVDNNFVFTDVNGYP
Sbjct  241  NNKKQFQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYP  300

Query  301  LVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTM  360
            LVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTM
Sbjct  301  LVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTM  360

Query  361  NIYAKITNSYKKDASQKFSKLMENVSKDLF  390
            NIYAKITNSYKKDASQKFSKLMENVSKDLF
Sbjct  361  NIYAKITNSYKKDASQKFSKLMENVSKDLF  390

4) SAOV_2065 in NC_017337


> EF010993|2|G1|116282493|ABJ97306.1|Staphylococcus_aureus_RN3984|-|87..1259|int|-|integrase
Length=390

 Score =  581 bits (2196),  Expect = 1e-167, Method: Compositional matrix adjust.
 Identities = 379/390 (98%), Positives = 388/390 (99%), Gaps = 0/390 (0%)

Query  1    MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGEYIAPS  60
            MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNG+YIAPS
Sbjct  1    MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAPS  60

Query  61   TSTFKQVADDWLKQYANEVKVSSVRAREKAIHHAIERFNNKPIQTINKHEYQRFVNDISA  120
            TSTFKQVADDW+ QYANEVKVSSVRAREKAI+HAIERFNNKPIQTINKHEYQRFVNDISA
Sbjct  61   TSTFKQVADDWISQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISA  120

Query  121  QYSKNYVDSIIASTNMIFKYAYDMKLIRILPSEGIKRPKKKVSVEELEDTEIHKKFLEKD  180
            QYSKNYVDSIIASTNMIFKYAYDMKLIRI+PSEGIKRPKKK+SVEELEDTEIHKKFLEKD
Sbjct  121  QYSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKD  180

Query  181  ELFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFEnntinitktyynpn  240
            ELFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPN
Sbjct  181  ELFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPN  240

Query  241  nnkkqyqVLTPKTESSIGKIPVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYP  300
            NNKKQ+Q+LTPKTESSIGKI+VDPHVIKLLKNYK DVQDTWKNELYVDNNFVFTDVNGYP
Sbjct  241  NNKKQFQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYP  300

Query  301  LVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTM  360
            LVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTM
Sbjct  301  LVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTM  360

Query  361  NIYAKITNSYKKDASQKFSKLMESVSKDLF  390
            NIYAKITNSYKKDASQKFSKLME+VSKDLF
Sbjct  361  NIYAKITNSYKKDASQKFSKLMENVSKDLF  390

5) int in NC_009782


> EF010993|2|G1|116282493|ABJ97306.1|Staphylococcus_aureus_RN3984|-|87..1259|int|-|integrase
Length=390

 Score =  574 bits (2167),  Expect = 3e-165, Method: Compositional matrix adjust.
 Identities = 376/390 (97%), Positives = 387/390 (99%), Gaps = 0/390 (0%)

Query  1    MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAPS  60
            MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAPS
Sbjct  1    MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAPS  60

Query  61   TSTFKQVADDWISQYANEVKVSSVRAREKAIHHAIERFKNKPIQTIKKHDYQRFVNDISI  120
            TSTFKQVADDWISQYANEVKVSSVRAREKAI+HAIERF+NKPIQTI+KH+YQRFVNDIS 
Sbjct  61   TSTFKQVADDWISQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISA  120

Query  121  QYSKNYVDSIVTSTNMIFKYAYDMKLIRILPSEGIKRPKKKVSVEELEDTEIHKKFLEKD  180
            QYSKNYVDSI++STNMIFKYAYDMKLIRI+PSEGIKRPKKK+SVEELEDTEIHKKFLEKD
Sbjct  121  QYSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKD  180

Query  181  ELFQFLEIAKNHHSPQNSFEVFYTLAYTGMRAGELLALKWSDIDFEnntinitktyynpn  240
            ELFQFLE+AKNHHSPQNSFEVF TLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPN
Sbjct  181  ELFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPN  240

Query  241  nnkkqyqiLTPKTESSIGKISVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYP  300
            NNKKQ+QILTPKTESSIGKISVDPHVIKLLKNYK DVQDTWKNELYVDNNFVFTDVNGYP
Sbjct  241  NNKKQFQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYP  300

Query  301  LVIKKLQLWIKAILKKTNITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTM  360
            LVIKKLQLWIKAILKKT+ITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTM
Sbjct  301  LVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTM  360

Query  361  NIYAKITNSYKKDASQKFSKLMENVSKDLF  390
            NIYAKITNSYKKDASQKFSKLMENVSKDLF
Sbjct  361  NIYAKITNSYKKDASQKFSKLMENVSKDLF  390

6) int in NC_002758


> EF010993|2|G1|116282493|ABJ97306.1|Staphylococcus_aureus_RN3984|-|87..1259|int|-|integrase
Length=390

 Score =  574 bits (2167),  Expect = 3e-165, Method: Compositional matrix adjust.
 Identities = 376/390 (97%), Positives = 387/390 (99%), Gaps = 0/390 (0%)

Query  1    MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAPS  60
            MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAPS
Sbjct  1    MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAPS  60

Query  61   TSTFKQVADDWISQYANEVKVSSVRAREKAIHHAIERFKNKPIQTIKKHDYQRFVNDISI  120
            TSTFKQVADDWISQYANEVKVSSVRAREKAI+HAIERF+NKPIQTI+KH+YQRFVNDIS 
Sbjct  61   TSTFKQVADDWISQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISA  120

Query  121  QYSKNYVDSIVTSTNMIFKYAYDMKLIRILPSEGIKRPKKKVSVEELEDTEIHKKFLEKD  180
            QYSKNYVDSI++STNMIFKYAYDMKLIRI+PSEGIKRPKKK+SVEELEDTEIHKKFLEKD
Sbjct  121  QYSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKD  180

Query  181  ELFQFLEIAKNHHSPQNSFEVFYTLAYTGMRAGELLALKWSDIDFEnntinitktyynpn  240
            ELFQFLE+AKNHHSPQNSFEVF TLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPN
Sbjct  181  ELFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPN  240

Query  241  nnkkqyqiLTPKTESSIGKISVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYP  300
            NNKKQ+QILTPKTESSIGKISVDPHVIKLLKNYK DVQDTWKNELYVDNNFVFTDVNGYP
Sbjct  241  NNKKQFQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYP  300

Query  301  LVIKKLQLWIKAILKKTNITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTM  360
            LVIKKLQLWIKAILKKT+ITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTM
Sbjct  301  LVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTM  360

Query  361  NIYAKITNSYKKDASQKFSKLMENVSKDLF  390
            NIYAKITNSYKKDASQKFSKLMENVSKDLF
Sbjct  361  NIYAKITNSYKKDASQKFSKLMENVSKDLF  390

7) int in NC_002745


> EF010993|2|G1|116282493|ABJ97306.1|Staphylococcus_aureus_RN3984|-|87..1259|int|-|integrase
Length=390

 Score =  574 bits (2167),  Expect = 3e-165, Method: Compositional matrix adjust.
 Identities = 376/390 (97%), Positives = 387/390 (99%), Gaps = 0/390 (0%)

Query  1    MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAPS  60
            MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAPS
Sbjct  1    MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAPS  60

Query  61   TSTFKQVADDWISQYANEVKVSSVRAREKAIHHAIERFKNKPIQTIKKHDYQRFVNDISI  120
            TSTFKQVADDWISQYANEVKVSSVRAREKAI+HAIERF+NKPIQTI+KH+YQRFVNDIS 
Sbjct  61   TSTFKQVADDWISQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISA  120

Query  121  QYSKNYVDSIVTSTNMIFKYAYDMKLIRILPSEGIKRPKKKVSVEELEDTEIHKKFLEKD  180
            QYSKNYVDSI++STNMIFKYAYDMKLIRI+PSEGIKRPKKK+SVEELEDTEIHKKFLEKD
Sbjct  121  QYSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKD  180

Query  181  ELFQFLEIAKNHHSPQNSFEVFYTLAYTGMRAGELLALKWSDIDFEnntinitktyynpn  240
            ELFQFLE+AKNHHSPQNSFEVF TLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPN
Sbjct  181  ELFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPN  240

Query  241  nnkkqyqiLTPKTESSIGKISVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYP  300
            NNKKQ+QILTPKTESSIGKISVDPHVIKLLKNYK DVQDTWKNELYVDNNFVFTDVNGYP
Sbjct  241  NNKKQFQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYP  300

Query  301  LVIKKLQLWIKAILKKTNITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTM  360
            LVIKKLQLWIKAILKKT+ITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTM
Sbjct  301  LVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTM  360

Query  361  NIYAKITNSYKKDASQKFSKLMENVSKDLF  390
            NIYAKITNSYKKDASQKFSKLMENVSKDLF
Sbjct  361  NIYAKITNSYKKDASQKFSKLMENVSKDLF  390

8) int in NC_007168


> EF010993|2|G1|116282493|ABJ97306.1|Staphylococcus_aureus_RN3984|-|87..1259|int|-|integrase
Length=390

 Score =  551 bits (2081),  Expect = 2e-158, Method: Compositional matrix adjust.
 Identities = 347/391 (89%), Positives = 374/391 (96%), Gaps = 1/391 (0%)

Query  1    MASYDQISKNNWRYRISLGKNAETGKYEYISKTGFKRKSDAKHQAEMIGRQLRNGDYIAP  60
            MASY++ + N WRYRISLGK+AETGKY YIS++GFKRKSDAKH+AEM+ RQLRNGDYIAP
Sbjct  1    MASYEKRG-NTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAP  59

Query  61   SSSTFKQVADDWLKQYANDVKVSSVRAREKAIQHAIERFNTKPIQTIKKHDYQRFVDDIS  120
            S+STFKQVADDW+ QYAN+VKVSSVRAREKAI+HAIERFN KPIQTI+KH+YQRFV+DIS
Sbjct  60   STSTFKQVADDWISQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDIS  119

Query  121  AQYSKNYVDSIVASTNMIFKYAYDTRLIKAMPSEGIKRPKKKVSVEELEDIEIHKKFLEK  180
            AQYSKNYVDSI+ASTNMIFKYAYD +LI+ MPSEGIKRPKKK+SVEELED EIHKKFLEK
Sbjct  120  AQYSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEK  179

Query  181  DELFQFLKVAKYHHSPQNSFEVFTTLAYTGMRAGELLALKWSDIDFENNTISItktyynp  240
            DELFQFL VAK HHSPQNSFEVF TLAYTGMRAGELLALKWSDIDFENNTI+ITKTYYNP
Sbjct  180  DELFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNP  239

Query  241  nnnkkHYQILTRKTESSIGKITVDPHVIQLLKDYKVNVQDTWKNELYVDNNFVFTDVNGY  300
            NNNKK++QILT KTESSIGKI+VDPHVI+LLK+YK +VQDTWKNELYVDNNFVFTDVNGY
Sbjct  240  NNNKKQFQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGY  299

Query  301  PLVIKKLQLWIKAILKKTDITNKQISTHSFRYTHYALLIEAGVHIKEIQERLRHKDINTT  360
            PLVIKKLQLWIKAILKKTDITNKQISTHSFR TH ALLIEAGVHIKEIQERLRHKDINTT
Sbjct  300  PLVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTT  359

Query  361  MNIYAKITNSYKKDASQKFSKLMENVSKGLF  391
            MNIYAKITNSYKKDASQKFSKLMENVSK+LF
Sbjct  360  MNIYAKITNSYKKDASQKFSKLMENVSKDLF  390

9) Sca_1539 in NC_012121


> EF010993|2|G1|116282493|ABJ97306.1|Staphylococcus_aureus_RN3984|-|87..1259|int|-|integrase
Length=390

 Score =  432 bits (1627),  Expect = 1e-122, Method: Compositional matrix adjust.
 Identities = 288/391 (74%), Positives = 359/391 (92%), Gaps = 2/391 (0%)

Query  1    MASYDQIAKNNWRYRISLGKNPQTGKYEYISKTGFQRKSDAKHHAEMVERQIRNNEYIAP  60
            MASY++ + N WRYRISLGK+++TGKY YIS++GF+RKSDAKHHAEMVERQ+RN +YIAP
Sbjct  1    MASYEKRG-NTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAP  59

Query  61   SAHTFSYIADEFINHYRKDAKVSSVRAREKAIKHAKVAFGDKAIQSITKHQYQQFVDDIS  120
            S+ TF  +AD+ I++Y ++ KVSSVRAREKAI+HA   F +K+IQ+I KH+YQ+FV+DIS
Sbjct  60   STSTFKQVADDWISQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDIS  119

Query  121  TRFSKNYVDSIVASTNLVFKYALDMNLLKKLPNEGIKRPKQKVTVEELEHTelkqkflek  180
            +++SKNYVDSI+ASTN++FKYA DM+L++ +P+EGIKRPK+K++VEELE+TE+ +KFLEK
Sbjct  120  AQYSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEK  179

Query  181  eelfeflNVAKNDHPPLNSFELFTLMAYSGCRAGEILALKWSDVDFDnytinitktyynp  240
            +ELF+FL+VAKN+H+P NSFE+F  +AY+G RAGE+LALKWSD+DF+N TINITKTYYNP
Sbjct  180  DELFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNP  239

Query  241  nnnkknyqiLTPKTNASIGKLSIDPHVIKLLKDYKVNVQDKWKNELYVDNNFVFTDNNGY  300
            NNNKK++QILTPKT++SIGK+S+DPHVIKLLK+YK +VQD WKNELYVDNNFVFTD NGY
Sbjct  240  NNNKKQFQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGY  299

Query  301  PLVIKKLSQWIQSIMSKTNI-DKNITTHSFRYTHCALLIEAGVHIKEIQERLRHKDINTT  359
            PLVIKKL  WI++I+ KT+I +K+I+THSFR THCALLIEAGVHIKEIQERLRHKDINTT
Sbjct  300  PLVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTT  359

Query  360  MNIYAKITDSYKKDASQKFSQLMENVSKELF  390
            MNIYAKIT+SYKKDASQKFS+LMENVSK+LF
Sbjct  360  MNIYAKITNSYKKDASQKFSKLMENVSKDLF  390

10) BTF1_27280 in NC_018508


> EF010993|2|G1|116282493|ABJ97306.1|Staphylococcus_aureus_RN3984|-|87..1259|int|-|integrase
Length=390

 Score =  272 bits (1017),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 175/389 (45%), Positives = 268/389 (69%), Gaps = 9/389 (2%)

Query  1    MASFQKYETKQGYKWLLIAEIGIDPTTGKRKQKKVRGFKTKKEAQLAAARIEQEVANGTY  60
            MAS++K    +G  W     +G D+ TGK K     GFK K +A+  A  +E+++ NG Y
Sbjct  1    MASYEK----RGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDY  56

Query  61   INEPDILFKDFVQEWLNIYSKSTKISSLRVRQKQSNKLVDFFANIKMKDITKKMYQTALN  120
            I  +   FK+  ++W++ Y++  K+SS+R R+K  N  ++ F N  ++ I K  YQ  +N
Sbjct  57   IAPSTSTFKQVADDWISQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVN  116

Query  121  DLHDKGYAFNTLDGIHTAGRMIFKKAIELQIIKSNPTDNVKLPRKVETVEDIENDKKAIK  180
            D+  + Y+ N +D+I ++  MIFK A ++++I+  P++ +K P+K  +VE++E+     K
Sbjct  117  DISAQ-YSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKK  175

Query  181  YLEKEELAHFLQVAKEK-GLDNDYVFFSILAYSGLRAGELLALKWTDVDFENNTIKITKT  239
            +LEK+EL +FL+VAK+  + +N +  F  LAY+G+RAGELLALKW+D+DFENNTI+ITKT
Sbjct  176  FLEKDELFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKT  235

Query  240  LYNPDNNSQHYHLLTPKTKGSIRTIKMDQGIMKLLKSHKAKQNELKLYTRPQYVDQGFVI  299
             YNP+NN +++++LTPKT +SI  I +D  ++KLLK+ K+  ++        YVD+ FV+
Sbjct  236  YYNPNNNKKQFQILTPKTESSIGKISVDPHVIKLLKNYKTDVQD--TWKNELYVDNNFVF  293

Query  300  TKASGYPEVMKMIQNRLKRLIKLSNIT-KNITPHSFRHTHTSLLIEAGVGIKEIQQRLGH  358
            T  +GYP V+K +Q ++K ++K ++IT K+I+ HSFRHTH +LLIEAGV IKEIQ+RL H
Sbjct  294  TDVNGYPLVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRH  353

Query  359  TDIETTMNIYAHMTKNMEEKASQKFSELM  387
             DI+TTMNIYA +T++    ASQKFS LM
Sbjct  354  KDINTTMNIYAKITNSYKKDASQKFSKLM  382

11) GC56T3_0230 in NC_014206


> EF010993|2|G1|116282493|ABJ97306.1|Staphylococcus_aureus_RN3984|-|87..1259|int|-|integrase
Length=390

 Score =  261 bits (977),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 172/396 (44%), Positives = 269/396 (68%), Gaps = 9/396 (2%)

Query  1    MASFQKYKTKDGEKWMFKMDVGIDPAtgkrktttrrgfktkkEAQLAAAKLYDEINNGGY  60
            MAS++K     G+ W +++ +G D+ TGK K  +  GFK K +A+  A  +  ++ NG+Y
Sbjct  1    MASYEK----RGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDY  56

Query  61   VKDTNILFKDFAQEWLAIYSETAKISTIRARKHELGHLMRYFGNLKLKDVTRKMYQDMLL  120
            +  +   FK+ A++W++ Y++  K+S++RAR   + H +  F N  ++ + +  YQ  + 
Sbjct  57   IAPSTSTFKQVADDWISQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVN  116

Query  121  DLKKKGYADNTLDGIHTTGRMIFKKAMELELINSNPTEYAKVPKQKKTVEDIESGNKDMK  180
            D+  + Y+ N +D+I ++  MIFK A ++ LI   P+E  K PK+K +VE++E  + + K
Sbjct  117  DISAQ-YSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKK  175

Query  181  FLEKHELALFLKTAQEHGLAMD-YVVFSTLAYTGMRLGELLALQWKDINFKEHTIAITKT  239
            FLEK+EL  FL  A++H  + + + VF TLAYTGMR GELLAL+W DI+F ++TI ITKT
Sbjct  176  FLEKDELFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKT  235

Query  240  LYSPRNNERYYQLLPPKTQGSIRTIKVDPNIISLLKKHKAEQNEIKLRMGELYHDLGFVF  299
             Y+P NN + +Q+L PKT++SI  I VDP++I LLK+ K++ ++   +  ELY D  FVF
Sbjct  236  YYNPNNNKKQFQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDT--WKNELYVDNNFVF  293

Query  300  ARPSGFPEVPKKIEIRMKRLLRIANI-HKHVTPHSLRHTHTSLLIEAGVGIKEIQQRLGH  358
            +  +G+P V KK+++++K +L+ ++I +K+++ HS+RHTH +LLIEAGV IKEIQ+RL H
Sbjct  294  TDVNGYPLVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRH  353

Query  359  ADIETTMNIYAHLTKDLEERASQKFSELMSNFIKNL  394
             DI+TTMNIYA +T+     ASQKFS LM N  K+L
Sbjct  354  KDINTTMNIYAKITNSYKKDASQKFSKLMENVSKDL  389

12) GTCCBUS3UF5_2700 in NC_016593


> EF010993|2|G1|116282493|ABJ97306.1|Staphylococcus_aureus_RN3984|-|87..1259|int|-|integrase
Length=390

 Score =  261 bits (977),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 172/396 (44%), Positives = 269/396 (68%), Gaps = 9/396 (2%)

Query  1    MASFQKYKTKDGEKWMFKMDVGIDPAtgkrktttrrgfktkkEAQLAAAKLYDEINNGGY  60
            MAS++K     G+ W +++ +G D+ TGK K  +  GFK K +A+  A  +  ++ NG+Y
Sbjct  1    MASYEK----RGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDY  56

Query  61   VKDTNILFKDFAQEWLAIYSETAKISTIRARKHELGHLMRYFGNLKLKDVTRKMYQDMLL  120
            +  +   FK+ A++W++ Y++  K+S++RAR   + H +  F N  ++ + +  YQ  + 
Sbjct  57   IAPSTSTFKQVADDWISQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVN  116

Query  121  DLKKKGYADNTLDGIHTTGRMIFKKAMELELINSNPTEYAKVPKQKKTVEDIESGNKDMK  180
            D+  + Y+ N +D+I ++  MIFK A ++ LI   P+E  K PK+K +VE++E  + + K
Sbjct  117  DISAQ-YSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKK  175

Query  181  FLEKHELALFLKTAQEHGLAMD-YVVFSTLAYTGMRLGELLALQWKDINFKEHTIAITKT  239
            FLEK+EL  FL  A++H  + + + VF TLAYTGMR GELLAL+W DI+F ++TI ITKT
Sbjct  176  FLEKDELFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKT  235

Query  240  LYSPRNNERYYQLLPPKTQGSIRTIKVDPNIISLLKKHKAEQNEIKLRMGELYHDLGFVF  299
             Y+P NN + +Q+L PKT++SI  I VDP++I LLK+ K++ ++   +  ELY D  FVF
Sbjct  236  YYNPNNNKKQFQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDT--WKNELYVDNNFVF  293

Query  300  ARPSGFPEVPKKIEIRMKRLLRIANI-HKHVTPHSLRHTHTSLLIEAGVGIKEIQQRLGH  358
            +  +G+P V KK+++++K +L+ ++I +K+++ HS+RHTH +LLIEAGV IKEIQ+RL H
Sbjct  294  TDVNGYPLVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRH  353

Query  359  ADIETTMNIYAHLTKDLEERASQKFSELMSNFIKNL  394
             DI+TTMNIYA +T+     ASQKFS LM N  K+L
Sbjct  354  KDINTTMNIYAKITNSYKKDASQKFSKLMENVSKDL  389

13) ydcL in NC_021362


> EF010993|2|G1|116282493|ABJ97306.1|Staphylococcus_aureus_RN3984|-|87..1259|int|-|integrase
Length=390

 Score =  191 bits (709),  Expect = 5e-50, Method: Compositional matrix adjust.
 Identities = 157/385 (41%), Positives = 250/385 (65%), Gaps = 13/385 (3%)

Query  23   WYYRYDIV-DPTTGKRKQKEVGGFRTKaeaeeeaKRIQYELLQGTYIEEKEITFEEFAKE  81
            W YR  +  D+ TGK K    +GF+ K++A ++A  ++ +L +G YI     TF + A +
Sbjct  11   WRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAPSTSTFKQVADD  70

Query  82   WLIWYENTGKIKVSTIRVRKHEISRLMDYFQYLKMKDITRKQYQEALNDLKARGYAENTI  141
            W+  Y N   +KVS++R R   I++ ++ F+   ++ I + +YQ  +ND+ A+ Y+ N +
Sbjct  71   WISQYANE--VKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISAQ-YSKNYV  127

Query  142  DGAHRTGRMIFKRAIELEVIKTDPTEYAIVPKVQKTVeelerekelpkylekeelAHFLS  201
            D+   +  MIFK A ++ +I+  P+E    PK + +VEELE      K+LEK+EL +FL 
Sbjct  128  DSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKDELFQFLE  187

Query  202  IIPDHQMDIRDYPIFFTLAYTGMRAGELCALKWSDIDFEEQTISITKTYYNPRNAIKEYE  261
            +  +H+     + +F TLAYTGMRAGEL ALKWSDIDFE++TI+ITKTYYNP N  K+++
Sbjct  188  VAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNNNKKQFQ  247

Query  262  LLTPKTKKSKRVIDVTEDVLIELDKLRKAQKEVQMKHRKT-YHNEGFVFAQLDEVNAGYP  320
            +LTPKT  S   I V  +V I L  L++ + +VQ   ++  Y ++ FVF++++    GYP
Sbjct  248  ILTPKTESSIGKISVDPHV-IKL--LKNYKTDVQDTWKNELYVDNNFVFTDVN----GYP  300

Query  321  AYVKLIEIRMKRLLKIANL-NPSLTPHSLRHTHTSLLAEAGVSLEQIMDRLGHTDDDTTK  379
              +K +++++K +LK +++ N  ++ HS+RHTH +LL EAGV + +I +RL H D +TT 
Sbjct  301  LVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTM  360

Query  380  NIYLHITKPKKKEASHKFSELMRSL  404
            NIY  IT++ KK+AS+KFS LM ++
Sbjct  361  NIYAKITNSYKKDASQKFSKLMENV  385