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Homologs of SAS0025 gene of NC_002953_R1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SAS0025
( YP_042158.1 )

type I restriction enzyme protein

NC_002953
(Staphylococcus aureus MSSA476)

0.0

100

2) hsdR
( YP_006844718.1 )

type I restriction-modification system restriction subunit

NC_018704
(Amphibacillus xylanus NBRC 15112)

0.0

3) GWCH70_3444
( YP_002951345.1 )

type III restriction protein res subunit

NC_012794
(Geobacillus sp. WCH70)

0.0

4) SZO_04240
( YP_002743982.1 )

type I restriction enzyme protein

NC_012470
(Streptococcus equi H70)

0.0

5) MmarC5_0639
( YP_001097166.1 )

type III restriction enzyme, res subunit

NC_009135
(Methanococcus maripaludis C5)

0.0

6) Mevan_0265
( YP_001322786.1 )

type III restriction protein res subunit

NC_009634
(Methanococcus vannielii SB)

0.0

7) CLOST_1262
( YP_003936287.1 )

Type III restriction protein res subunit

NC_014614
(Clostridium sticklandii DSM 519)

0.0

8) SELR_pSRC600110
( YP_005434669.1 )

putative restriction enzyme

NC_017070
(Selenomonas ruminantium TAM6421)

0.0

9) ELI_1146
( YP_003959097.1 )

hypothetical protein

NC_014624
(Eubacterium limosum KIST612)

0.0

10) CLM_2294
( YP_002804462.1 )

type III restriction protein res subunit

NC_012563
(Clostridium botulinum Kyoto)

0.0

11) hsdR2
( YP_001621244.1 )

type I restriction enzyme, R subunit

NC_010163
(Acholeplasma laidlawii PG-8A)

0.0

12) RBAU_0696
( YP_008411700.1 )

putative type I restriction-modification system (HsdR)

NC_022075
(Bacillus amyloliquefaciens UCMB-5033)

0.0

13) BSUW23_03435
( YP_003865052.1 )

type I restriction-modification system restriction subunity (HsdR)

NC_014479
(Bacillus subtilis W23)

0.0

14) I33_0766
( YP_005555738.1 )

dead/deah box helicase

NC_017195
(Bacillus subtilis RO-NN-1)

0.0

15) A7A1_1718
( YP_007210608.1 )

Type I restriction-modification system R subunit HsdR

NC_019896
(Bacillus subtilis BSP1)

0.0

16) Nther_0797
( YP_001916972.1 )

hypothetical protein

NC_010718
(Natranaerobius thermophilus JW/NM-WN-LF)

0.0

17) BpOF4_03725
( YP_003425703.1 )

Type 1 restriction-modification system R (restriction) subunit

NC_013791
(Bacillus pseudofirmus OF4)

0.0

18) BTG_16380
( YP_006604751.1 )

Type 1 restriction-modification system R (restriction) subunit

NC_018500
(Bacillus thuringiensis HD-771)

0.0

19) Sgly_0848
( YP_004265198.1 )

type III restriction protein res subunit

NC_015172
(Syntrophobotulus glycolicus DSM 8271)

0.0

20) TepRe1_2223
( YP_004461652.1 )

Restriction endonuclease, type I, EcoRI, R subunit/Type III

NC_015519
(Tepidanaerobacter acetatoxydans Re1)

0.0

21) TepiRe1_2391
( YP_007273209.1 )

putative type I restriction-modification system (HsdR)

NC_019954
(Tepidanaerobacter acetatoxydans Re1)

0.0

22) Turpa_0053
( YP_006438222.1 )

Restriction endonuclease, type I, EcoRI, R subunit/Type III

NC_018020
(Turneriella parva DSM 21527)

0.0

23) Clocl_0191
( YP_005044860.1 )

helicase, type I site-specific restriction-modification system restriction subunit

NC_016627
(Clostridium clariflavum DSM 19732)

0.0

24) Nitsa_1293
( YP_004168294.1 )

hypothetical protein

NC_014935
(Nitratifractor salsuginis DSM 16511)

3e-180

25) Ethha_1801
( YP_004092057.1 )

hypothetical protein

NC_014828
(Ethanoligenens harbinense YUAN-3)

2e-178

26) Cyan8802_3992
( YP_003139630.1 )

type III restriction protein res subunit

NC_013161
(Cyanothece sp. PCC 8802)

3e-178

27) CLOAM0220
( YP_001740336.1 )

DEAD/DEAH box helicase

NC_020449
(Candidatus Cloacamonas acidaminovorans Evry)

9e-178

28) NIES39_A06620
( YP_005067038.1 )

type I restriction-modification system R subunit

NC_016640
(Arthrospira platensis NIES-39)

6e-177

29) Tbd_2685
( YP_316443.1 )

DEAD/DEAH box helicase

NC_007404
(Thiobacillus denitrificans ATCC 25259)

7e-176

30) Dd1591_4250
( YP_003006520.1 )

hypothetical protein

NC_012912
(Dickeya zeae Ech1591)

4e-175

31) Metme_4222
( YP_004515072.1 )

Restriction endonuclease, type I, EcoRI, R subunit/Type III

NC_015572
(Methylomonas methanica MC09)

5e-175

32) Mic7113_4818
( YP_007123893.1 )

helicase, type I site-specific restriction-modification system restriction subunit

NC_019738
(Microcoleus sp. PCC 7113)

5e-175

33) DGI_1301
( YP_008590323.1 )

hypothetical protein

NC_022444
(Desulfovibrio gigas ATCC 19364)

8e-175

34) Oscil6304_1096
( YP_007084743.1 )

helicase, type I site-specific restriction-modification system restriction subunit

NC_019693
(Oscillatoria acuminata PCC 6304)

7e-173

35) Hprae_2037
( YP_005837319.1 )

type III restriction protein res subunit

NC_017455
(Halanaerobium praevalens DSM 2228)

3e-170

36) Halhy_2181
( YP_004446937.1 )

type III restriction protein res subunit

NC_015510
(Haliscomenobacter hydrossis DSM 1100)

3e-170

37) B932_2645
( YP_006985126.1 )

hypothetical protein

NC_019396
(Gluconobacter oxydans H24)

2e-169

38) Fjoh_2695
( YP_001195037.1 )

hypothetical protein

NC_009441
(Flavobacterium johnsoniae UW101)

3e-168

39) Metev_0465
( YP_003726176.1 )

hypothetical protein

NC_014253
(Methanohalobium evestigatum Z-7303)

1e-166

40) Dole_0278
( YP_001528165.1 )

hypothetical protein

NC_009943
(Desulfococcus oleovorans Hxd3)

1e-165

41) lpa_00832
( YP_003617808.1 )

type I restriction enzyme R protein

NC_014125
(Legionella pneumophila 2300/99 Alcoy)

7e-164

42) hsdR
( YP_089363.1 )

HsdR protein

NC_006300
(Mannheimia succiniciproducens MBEL55E)

2e-163

43) LPC_2788
( YP_001252035.1 )

putative type I restriction enzyme R protein

NC_009494
(Legionella pneumophila Corby)

1e-162

44) Mvol_0516
( YP_003707149.1 )

type III restriction protein res subunit

NC_014222
(Methanococcus voltae A3)

5e-160

45) Cbei_3156
( YP_001310245.1 )

type III restriction protein, res subunit

NC_009617
(Clostridium beijerinckii NCIMB 8052)

6e-158

46) BLASA_2161
( YP_005329100.1 )

Type I restriction enzyme R

NC_016943
(Blastococcus saxobsidens DD2)

7e-158

47) Tgr7_0598
( YP_002512682.1 )

type I site-specific restriction-modification system, R subunit

NC_011901
(Thioalkalivibrio sulfidophilus HL-EbGR7)

4e-148

48) M635_08100
( YP_008294511.1 )

DEAD/DEAH box helicase

NC_021834
(Campylobacter jejuni 32488)

4e-146

49) Mbar_A1014
( YP_304562.1 )

type I restriction-modification system restriction subunit

NC_007355
(Methanosarcina barkeri Fusaro)

1e-145

50) CJJ81176_0780
( YP_001000448.1 )

type I site-specific deoxyribonuclease chain R

NC_008787
(Campylobacter jejuni 81-176)

5e-145

51) TVNIR_1050
( YP_007216215.1 )

Type I restriction-modification system, restriction subunit R

NC_019902
(Thioalkalivibrio nitratireducens DSM 14787)

1e-144

52) BN865_13620c
( YP_008473997.1 )

Type I restriction-modification system, restriction subunit R

NC_022132
(Campylobacter coli 76339)

9e-144

53) PSPA7_0077
( YP_001345473.1 )

type I restriction-modification system subunit R

NC_009656
(Pseudomonas aeruginosa PA7)

9e-144

54) PSTAA_0898
( YP_005937550.1 )

type I restriction-modification system subunit R

NC_017532
(Pseudomonas stutzeri DSM 4166)

7e-143

55) K734_03225
( YP_008034146.1 )

Type I site-specific restriction-modification system, R subunit (helicase)

NC_021286
(Idiomarina loihiensis GSL 199)

4e-142

56) IL0644
( YP_155034.1 )

Type I site-specific restriction-modification system, R subunit (helicase)

NC_006512
(Idiomarina loihiensis L2TR)

4e-142

57) PSF113_5186
( YP_005210561.1 )

Type I restriction-modification system, restriction subunit R

NC_016830
(Pseudomonas fluorescens F113)

7e-141

58) ICDCCJ07001_731
( YP_004066287.1 )

Type I restriction enzyme R protein N terminal protein (HSDR_N)

NC_014802
(Campylobacter jejuni ICDCCJ07001)

1e-140

59) Psest_0876
( YP_007239098.1 )

type I restriction enzyme R protein

NC_019936
(Pseudomonas stutzeri RCH2)

2e-140

60) DelCs14_4347
( YP_004489681.1 )

Restriction endonuclease, type I, EcoRI, R subunit/Type III

NC_015563
(Delftia sp. Cs1-4)

4e-133

61) TL13_0247
( YP_007974623.1 )

Type I restriction-modification system, restriction subunit R

NC_021213
(Streptococcus suis TL13)

2e-127

62) CYCME_2461
( YP_008375125.1 )

Type I site-specific restriction-modification system, R (restriction) subunit-related helicase

NC_021917
(Cycloclasticus zancles 7-ME)

7e-125

63) Tola_2270
( YP_002893454.1 )

type III restriction protein res subunit

NC_012691
(Tolumonas auensis DSM 9187)

5e-123

64) APA01_43180
( YP_003189484.1 )

type I/III endonuclease restriction R subunit

NC_013211
(Acetobacter pasteurianus IFO 3283)

3e-113

65) APA42C_43180
( YP_005479731.1 )

type I/III endonuclease restriction R subunit

NC_017105
(Acetobacter pasteurianus IFO 3283)

3e-113

66) APA12_43180
( YP_005485227.1 )

type I/III endonuclease restriction R subunit

NC_017113
(Acetobacter pasteurianus IFO 3283)

3e-113

67) APA03_43180
( YP_005485646.1 )

type I/III endonuclease restriction R subunit

NC_017118
(Acetobacter pasteurianus IFO 3283)

3e-113

68) APA07_43180
( YP_005488511.1 )

type I/III endonuclease restriction R subunit

NC_017122
(Acetobacter pasteurianus IFO 3283)

3e-113

69) APA22_43180
( YP_005491317.1 )

type I/III endonuclease restriction R subunit

NC_017126
(Acetobacter pasteurianus IFO 3283)

3e-113

70) APA26_43180
( YP_005491735.1 )

type I/III endonuclease restriction R subunit

NC_017131
(Acetobacter pasteurianus IFO 3283)

3e-113

71) APA32_43180
( YP_005500484.1 )

type I/III endonuclease restriction R subunit

NC_017149
(Acetobacter pasteurianus IFO 3283)

3e-113

• Sequence Alignments

1) SAS0025 in NC_002953


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score = 1604 bits (6090),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1012/1012 (100%), Positives = 1012/1012 (100%), Gaps = 0/1012 (0%)

Query  1     MISVIKNKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWK  60
             MISVIKNKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWK
Sbjct  1     MISVIKNKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWK  60

Query  61    RYVSIYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKN  120
             RYVSIYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKN
Sbjct  61    RYVSIYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKN  120

Query  121   YEANRFQCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDP  180
             YEANRFQCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDP
Sbjct  121   YEANRFQCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDP  180

Query  181   KELIFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGY  240
             KELIFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGY
Sbjct  181   KELIFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGY  240

Query  241   PTSYLWENVLTSYQLLDIFERFMNLEEKKKLLIFPRYHQLDVVKKLISDTQHHGPGKNYL  300
             PTSYLWENVLTSYQLLDIFERFMNLEEKKKLLIFPRYHQLDVVKKLISDTQHHGPGKNYL
Sbjct  241   PTSYLWENVLTSYQLLDIFERFMNLEEKKKLLIFPRYHQLDVVKKLISDTQHHGPGKNYL  300

Query  301   IQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVG  360
             IQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVG
Sbjct  301   IQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVG  360

Query  361   QVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTG  420
             QVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTG
Sbjct  361   QVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTG  420

Query  421   SSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATP  480
             SSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATP
Sbjct  421   SSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATP  480

Query  481   KEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPEL  540
             KEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPEL
Sbjct  481   KEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPEL  540

Query  541   PKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQ  600
             PKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQ
Sbjct  541   PKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQ  600

Query  601   EFKKYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSEDFN  660
             EFKKYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSEDFN
Sbjct  601   EFKKYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSEDFN  660

Query  661   LLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEI  720
             LLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEI
Sbjct  661   LLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEI  720

Query  721   YEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLLG  780
             YEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLLG
Sbjct  721   YEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLLG  780

Query  781   RLSSVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFTGFLL  840
             RLSSVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFTGFLL
Sbjct  781   RLSSVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFTGFLL  840

Query  841   KFIPEKQRNYIDIEDKVKLEYYKLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPEEEY  900
             KFIPEKQRNYIDIEDKVKLEYYKLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPEEEY
Sbjct  841   KFIPEKQRNYIDIEDKVKLEYYKLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPEEEY  900

Query  901   DSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAKLVNMAQNNSEEMFANSlfqq  960
             DSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAKLVNMAQNNSEEMFANSLFQQ
Sbjct  901   DSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAKLVNMAQNNSEEMFANSLFQQ  960

Query  961   qfqdflidqYNQGEAAYSKMFSNNRDFYDTVYQLLAKDYYRWLRSQKADNFA  1012
             QFQDFLIDQYNQGEAAYSKMFSNNRDFYDTVYQLLAKDYYRWLRSQKADNFA
Sbjct  961   QFQDFLIDQYNQGEAAYSKMFSNNRDFYDTVYQLLAKDYYRWLRSQKADNFA  1012

2) hsdR in NC_018704


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score = 1284 bits (4871),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 764/1009 (76%), Positives = 932/1009 (93%), Gaps = 0/1009 (0%)

Query  1     MLEKKEIRFEQDIETVLTSEGGWQSVSFAETNYDPSIGMDAIVLIDFIQETQPRAWKRYV  60
             ++ +KEI FEQDIE+ L   GGW+SV F +T+YD++I++D+ VL++F+++TQP+ WKRYV
Sbjct  4     VIKNKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYV  63

Query  61    SIYKEAAVDRFIRRFNEEVTTHGLLHVLRKGIRDRGVHFRVIYFRPVSSISYDNLKLYEA  120
             SIY+  A ++F++R+NEE+T HG+LHVLRKGIRDRGV F+V+YF+P SS++ +N+K YEA
Sbjct  64    SIYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEA  123

Query  121   NRFHCIRQFYYSANNRNSIDMVLAVNGIPLVALELKNQYTGQSVEHARLQFEQNRDPREL  180
             NRF+C+RQF YS + RN+IDMVL +NGIPLVALELKNQYTGQ+VEHARLQFEQ+RDP+EL
Sbjct  124   NRFQCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKEL  183

Query  181   VFQFNTRFLVYFAVDHYDVYMTTKLARNKTYFLPFnqgsngpgnvggagnpanadgypTA  240
             +FQFN+RFLVYFAVDH++V MTTKLA+ +TYFLPF+QGSNGPG VGGAGNP+N+ GYPT+
Sbjct  184   IFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTS  243

Query  241   YLWEEVLQRNQLMDIIERFMNLEVKKNILIFPRYHQLDVVKKLVADTKEYGAGKNYLIQH  300
             YLWE+VL   QL+DI+ERFMNLE KK++LIFPRYHQLDVVKKL++DT++ G+GKNYLIQH
Sbjct  244   YLWENVLTSYQLLDIFERFMNLEEKKKLLIFPRYHQLDVVKKLISDTQHHGPGKNYLIQH  303

Query  301   SAGSGKSNSIAWLAYHLASLHNQEDEPIFSSIIIVTDRTVLDRQLQDTLLSFEHTTGQVE  360
             SAGSGKSNSIAWLAYHLASLH++ED+PI+SS+I+VTDRTVLDRQLQ+TL+SFEHT GQVE
Sbjct  304   SAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVE  363

Query  361   TIGDNKTSQHLKDAINNRKKIIITTLQKFPVIYDEIDSVAGRNFAVIVDEAHSSQTGSSA  420
             TIGDNKTSQ+LK AIN++KKIIITTLQKFPVIYDEID+ AGR+FA++VDEAHSSQTGSSA
Sbjct  364   TIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTGSSA  423

Query  421   QKLKQALADKEASLKEYQeieeeieNqslddqdqlvqtllsqGQHNNLSFFAFTATPKEK  480
             QKLK+ALADKEASLKEYQE+EE +E+QSLDDQDQ+VQTLLSQGQH+NLSFFAFTATPKEK
Sbjct  424   QKLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEK  483

Query  481   TIEMFGTRQKDGSYRPFHIYSMRQAIEEGFILDVLKNYMTYKTSYRIAKEIEDNPELPKT  540
             TIEMFGT+Q DGSY+PFHIYSMRQAIEEGFIL+VL+NYMTY+TSY+IAK IE++PELPKT
Sbjct  484   TIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKT  543

Query  541   EAVRAIARYQSFHPWVLRQKTEIMIEQFREVTKKAINGRAKAMIVTSSRLHAVRYMKEFK  600
             EAVRAIA+YQS+HPWVLRQK+EIMIEQFR VT+KA++GR+KAMIVT+SRLHAVRYM+EFK
Sbjct  544   EAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFK  603

Query  601   QYIEEKGYKDLDVLVAFSGTVNDDGEEYTEPKLNITKSGERIQENQLKETFHSDDFNLLI  660
             +YI EKGY D+DVLVAFSGTV+DDG EYTEPK+N+T SGERIQENQLKE+FHS+DFNLLI
Sbjct  604   KYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLI  663

Query  661   VAEKYQTGFDEPLLHTMFVDKKLRGVKAVQTLSRLNRTMPGKKDTFVLDFVNTEEDIFEA  720
             VAEKYQTGFDEPLLHTMFVDK+LRGVKAVQTLSRLNRTMPGK DTF+LDFVNT E+I+EA
Sbjct  664   VAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEA  723

Query  721   FQPFYEATTLKEEININLIYDTQSKLRKFYVYNDDDIKQVMKINEQAGNKQDERLLGRLS  780
             FQPFYEAT+LKEEININLIYDTQSKLRKF +YNDDDI+ VMK+N QA +KQ+++LLGRLS
Sbjct  724   FQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLLGRLS  783

Query  781   SLFKPILGRYEELEEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKDLLEESIFTGFLLKFI  840
             S+++P+++RY +L EDVQYDFRVTLRNFNKWYNYIAQIDRTFDK+LLEESIFTGFLLKFI
Sbjct  784   SVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFTGFLLKFI  843

Query  841   PKEKREKISIDDKVKLEYYKLQEDFQGEISLIAEDDGSGMLEHPGTVDATVKPTDEHDTL  900
             P  +R+ I I+DKVKLEYYKLQEDF+G+I+L+ ED  +G L HP+ V+ATV+P +E D+L
Sbjct  844   PEKQRNYIDIEDKVKLEYYKLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPEEEYDSL  903

Query  901   EEIIQRINERFPEDFTEGDRVLVETMHRTLRKSADAKLVNMARNNSVEMFENNLFKEQFQ  960
             +EII++INERFP+DFT+GDRVLV  M+ TL +++DAKLVNMA+NNS EMF N+LF++QFQ
Sbjct  904   NEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAKLVNMAQNNSEEMFANSLFQQQFQ  963

Query  961   DFIIEQYTENQSAYEKLFDADQSYYNTIYSFIAKDLYKWLRSQTPDNYA  1009
             DF+I+QY + ++AY K+F  ++ +Y+T+Y ++AKD Y+WLRSQ +DN+A
Sbjct  964   DFLIDQYNQGEAAYSKMFSNNRDFYDTVYQLLAKDYYRWLRSQKADNFA  1012

3) GWCH70_3444 in NC_012794


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  954 bits (3616),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 603/1015 (60%), Positives = 804/1015 (80%), Gaps = 22/1015 (2%)

Query  5     DSEKRFEEDIETYLLTEGGY--VKGDQSNYDKERAIDLNQLIDFIKETQEKEWTRYEKIY  62
             + E  FE+DIE+ L+  GG   V+ ++++YD + A+D   L++F+K+TQ K+W RY  IY
Sbjct  7     NKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYVSIY  66

Query  63    GEEAPKKLYKRLNDEIETNGLLHVLRHGITDRGVKLKIASFRPETTLNEKTIRDYQANKL  122
               +A +K+ KRLN+EI  +G+LHVLR GI DRGV +K+  F+P ++LN   I++Y+AN++
Sbjct  67    RTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEANRF  126

Query  123   TVIRQFAYSTENHNTLDMVLSLNGIPIVALELKNQFKGQSVENGKKQFMYDRDPREKIFQ  182
               +RQF YS   +NT+DMVL +NGIP+VALELKNQ+ GQ+VE+++ QF  DRDP+E IFQ
Sbjct  127   QCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKELIFQ  186

Query  183   FNKRILVYFVVDLYEVWMTTKLDGKNTVFLPFnqgsngagevggagnpenpDGYATSYLW  242
             FN R+LVYF VD ++V MTTKL   NT FLPF+QGSNG+G VGGAGNP NP GY+TSYLW
Sbjct  187   FNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLW  246

Query  243   EKVLHKDSLMNILQRFMHLEVKKEKFIKNGKESVKTSSKLIFPRYHQLDVVRKLVEDVRQ  302
             E+VL    L++I++RFM+LE KK                LIFPRYHQLDVV+KL+ D ++
Sbjct  247   ENVLTSYQLLDIFERFMNLEEKK--------------KLLIFPRYHQLDVVKKLISDTQH  292

Query  303   KGSGENYLIQHSAGSGKSNSIAWLAYHLASLHNEDNESIFTSVIVVTDRTVLDRQLQQTI  362
              G+G NYLIQHSAGSGKSNSIAWLAYHLASLH++++++I++SVIVVTDRTVLDRQLQ+T+
Sbjct  293   HGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTL  352

Query  363   SSFDHTTGLVETIDDKKTSKDLRDAINNGKRIIITTLQKFPVIYEEVEVNKGSRFAVIVD  422
              SF+HT G VETI+D+KTS+DL+ AIN+ K+IIITTLQKFPVIY+E++   G  FA++VD
Sbjct  353   MSFEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVD  412

Query  423   EAHSSQTGksakklkaalaDTeealreyaeleaeieaeqlDFEDEIVQELLTHGRHKNLS  482
             EAHSSQTG SA+KLK ALAD E +L+EY E+E  +E + LD +D+IVQ LL++G+H NLS
Sbjct  413   EAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLS  472

Query  483   FFAFTATPKEKTLEMFGTKQPDGTFKPFHIYSMRQAIEEGFILDVLQNYMTYKTYYRIAK  542
             FFAFTATPKEKT+EMFGTKQ+DG++ PFHIYSMRQAIEEGFIL+VLQNYMTY+T Y+IAK
Sbjct  473   FFAFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAK  532

Query  543   NTSENPELSTTQGVKAIKRYQSLHPYTLQQKTAIMVEQFRNVTRHKIGGKAKAMVVTASR  602
             +  E+PEL+ T++V+AI +YQSLHP  L+QK+ IM+EQFR+VT+  + G++KAM+VTASR
Sbjct  533   SIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASR  592

Query  603   LHAVRYFHEFKKYIKEKGYDDIDVLVAFSGVVIDQNEEYREETLNKTKDGKRIKESQLKE  662
             LHAVRY +EFKKYIKEKGY D+DVLVAFSG V D+  EY E  +N T  G RI+E+QLKE
Sbjct  593   LHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQLKE  652

Query  663   AFHSDDFNILIVAEKYQTGFDEPLLHTMFIDKKLSGVKAVQTLSRLNRTYPGKEDTFILD  722
             AFHS+DFN+LIVAEKYQTGFDEPLLHTMF+DK+L GVKAVQTLSRLNRT PGK DTFILD
Sbjct  653   AFHSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILD  712

Query  723   FVNEAEDIKKAFQPYYEVTELDKEIDVNLIYDTRTKLRNFKIYNDQDIKKLTRIYFKKGK  782
             FVN AE+I  AFQP+YE T L  EI++NLIYDT++KLR+F IYND+DI+ + ++  +++K
Sbjct  713   FVNTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLN-RQAK  771

Query  783   QTEKD--LGKIASHLIPIIKRYEELDEETQYKFRVTVRNFNKWYSYITQLVRMFDKELHE  840
             Q ++D  LG+++S L P+I RY +L E+ QY FRVT+RNFNKWY+YI+Q+ R FDKEL E
Sbjct  772   QKQNDQLLGRLSSVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLE  831

Query  841   EYIFTSYLIKFIPKNSAEKINIEDKVKLEYYKLEETFKGTITLESNSPENV-LKNSDNVD  899
             E IFT++L+KFIP +  + I+IEDKVKLEYYKL+E FKG I+L ++  EN  L ++ +V+
Sbjct  832   ESIFTGFLLKFIPEKQRNYIDIEDKVKLEYYKLQEDFKGDIALVNEDVENGQLAHPSEVN  891

Query  900   TGIKPPDDQDLLENIIQRVNKRFEGKFTEADRVIVEGIYKKTVKGNE-KLRRFARNNDEE  958
             + ++P ++ D L++II+++N RF   FT++DRV+V  +    ++  + KL   A+NN EE
Sbjct  892   ATVRPEEEYDSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAKLVNMAQNNSEE  951

Query  959   MFNKSIFPDVFEKVAQELYMEQMNAYSKLF-EDRSFYNAVMEAVAKEVYKELRRE  1012
             MF +S+F + F+    + Y +   AYSK+F ++R FY++V + +AK+ Y+ LR +
Sbjct  952   MFANSLFQQQFQDFLIDQYNQGEAAYSKMFSNNRDFYDTVYQLLAKDYYRWLRSQ  1006

4) SZO_04240 in NC_012470


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  951 bits (3605),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 566/995 (57%), Positives = 789/995 (80%), Gaps = 20/995 (2%)

Query  1    MEDNEKRFEQDIETWLTSAEGGWTKAKFQELNYEATKGLDLELLIQFIKETQAKKWARYE  60
            + ++E  FEQDIE+ L    GGW   +FQ+ +Y+A  +LD  +L++F+K+TQ+K+W RY 
Sbjct  5    IKNKEINFEQDIEASLVQY-GGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYV  63

Query  61   KMVGSDPVGNFYKRFEQEVSQHGILHVLRKGIKDRGVQFKVLQFRPSSTLNEEINKDYRA  120
             +  +++  +F KR+++E+++HGILHVLRKGI+DRGV FKV+ F+P+S+LN E  K+Y A
Sbjct  64   SIYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEA  123

Query  121  NKTQLVRQFAYSPYNHNTLDMVLSVNGIPLVALELKNQFKGQSVEHAKKQLMFDRDPKEA  180
            N+ Q VRQF YS   +NT+DMVL +NGIPLVALELKNQ+ GQ+VEHA+ Q+  DRDPKE 
Sbjct  124  NRFQCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKEL  183

Query  181  IFQFNHRVLVYFAVDLNQAWMTTKLAGSKTFFLPFnqgsngagnvggagnPENSEGYQTA  240
            IFQFN R LVYFAVD  +  MTTKLA ++T+FLPF+QGSNG+G VGGAGNP N+ GY T+
Sbjct  184  IFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTS  243

Query  241  YLWERVLQKDALLDILQRFINLEIKYEKDLAGKTVEKRNMIFPRYHQLDVVKKLVADTKQ  300
            YLWE VL    LLDI++RF+NLE K           K+ +IFPRYHQLDVVKKL++DT++
Sbjct  244  YLWENVLTSYQLLDIFERFMNLEEK-----------KKLLIFPRYHQLDVVKKLISDTQH  292

Query  301  KGSGQHYLIQHSAGSGKSNSIAWLSYHLQKLHNDKNEPIFNSVIIVTDRTVLDRQLQQTI  360
             G+G++YLIQHSAGSGKSNSIAWL+YHL  LH++ ++PI++SVI+VTDRTVLDRQLQ+T+
Sbjct  293  HGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTL  352

Query  361  TSFDATTGLVETIGDNKSSKDLLKAINDGKQIIITTLQKFPVIYQDVESTTGKRFAVIVD  420
             SF+ T G VETIGDNK+S+DL  AIND K+IIITTLQKFPVIY+++++T+G+ FA++VD
Sbjct  353  MSFEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVD  412

Query  421  EAHSSQTGSASQKLKIALSDREEALKEWEEFDEEASSKARDNEDELNNTLLGQGRHENIS  480
            EAHSSQTGS++QKLK AL+D+E +LKE +EF+E    ++ D++D++ +TLL+QG+H+N+S
Sbjct  413  EAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLS  472

Query  481  FYAFTATPKAKTLELFGQRTLDGKFQPFHVYSMRQAIEEGFILDVLQNYMTYHTAYQISK  540
            F+AFTATPK KT+E+FG +  DG ++PFH+YSMRQAIEEGFIL+VLQNYMTY+T+Y+I+K
Sbjct  473  FFAFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAK  532

Query  541  LVPDDPKLPASQAKRAIARYADLHPYNLAQKTEVMVEVFREKTRHAIGGRGKAMVVTSSL  600
             + +DP LP ++A RAIA+Y  LHP  L QK+E+M+E FR  T+ A+ GRGKAM+VT+S 
Sbjct  533  SIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASR  592

Query  601  LAAVRYMKEFKRYISEKGYTDMDALVAFSGEITDNGEEYTEPKMN------GLKENQLKE  654
            L AVRYM+EFK+YI EKGYTDMD LVAFSG + D+G EYTEPKMN       ++ENQLKE
Sbjct  593  LHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQLKE  652

Query  655  AFTTPQYNVLIVAEKYQTGFDEPQLHTMFVDKKLRGVKAVQTLSRLNRTMQGKVDTFVLD  714
            AF + ++N+LIVAEKYQTGFDEP LHTMFVDK+LRGVKAVQTLSRLNRTM GK DTF+LD
Sbjct  653  AFHSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILD  712

Query  715  FKNSAEDIKEAFQPFYGKSTLDQAIDPNILYDAKEKIRKYHLYNTDDVNKVVSFYQSSSH  774
            F N+AE+I EAFQPFY  ++L + I+ N++YD++ K+RK+H+YN DD++ V+ + + + +
Sbjct  713  FVNTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQ  772

Query  775  LQDEKMLGRLASSFHPIIERYSQLEDSVKYEFRTLLRGFKEKYNYISQLVRLFDKELLSE  834
             Q++++LGRL+S ++P+I RYS+L + V+Y+FR  LR F+  YNYI+Q+ R FDKELL E
Sbjct  773  KQNDQLLGRLSSVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEE  832

Query  835  YLFINYLISLLPKNSQEVIDISDKVRMDYYKLIYDNEGSITLVEE--ENLEYNQQQGINP  892
             +F  +L+ ++P + ++ IDI DKV+++YYKL  D  G I+LV+E  EN +  +   +N+
Sbjct  833  SIFTGFLLKFIPEKQRNYIDIEDKVKLEYYKLQEDFKGDIALVNEDVENGQLAHPSEVNA  892

Query  893  SVKPPEEKDTLTEILNKINSQFPEVFTDEDQVVLDMIVKQVVQNPSERQRSIAKSNDYAM  952
            +V+P EE D+L EI++KIN +FP+ FT+ D+V++  +   +++N   +  ++A++N   M
Sbjct  893  TVRPEEEYDSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAKLVNMAQNNSEEM  952

Query  953  FKNSLFPKEFEDLVINLSQTSEGTFEKLFSNEEIF  987
            F NSLF ++F+D++I+  + +E+++ K+FSN+  F
Sbjct  953  FANSLFQQQFQDFLIDQYNQGEAAYSKMFSNNRDF  987

5) MmarC5_0639 in NC_009135


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  910 bits (3448),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 560/1013 (56%), Positives = 785/1013 (78%), Gaps = 23/1013 (2%)

Query  5     EKRFEQDIEESMLTNGGY--IKGDKSSYSAERGIDLSKLVEFIKTTQEKEWDRYVRIYGD  62
             E  FEQDIE S++  GG   ++ + + Y A+ ++D + L+EF+K TQ K+W RYV IY  
Sbjct  9     EINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYVSIYRT  68

Query  63    EAENNLFKRFNDSVNAQGLLYSLRKGIADRGVKLKLCYFKPESNLNHELVKKYENNILTV  122
             +AE++++KR+N+ +  +G+L  LRKGI DRGV +K+ YF+P S+LN E +K+YE N +  
Sbjct  69    NAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEANRFQC  128

Query  123   TRQFAYSTENKNTIDMVLSLNGIPIVALELKNQITGQSIENGKKQFMYDRNPREPCFQFN  182
              RQF YS   +NTIDMVL +NGIP+VALELKNQ TGQ++E+++ QF  DR+P+E  FQFN
Sbjct  129   VRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKELIFQFN  188

Query  183   KRFLAYFAVDLHEVAMTTKLAGPNTMFLPFNqgsggagqvggagNPENKDGYATSYLWEQ  242
              RFL YFAVD  +V MTTKLA  NT FLPF+QGS G+G+VGGAGNP N  GY+TSYLWE+
Sbjct  189   SRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLWEN  248

Query  243   VLTKDSLMNIIHRFLHINVEKKKVVKNGRETTKISQKLIFPRYHQLDVVTKLVNNVKQHG  302
             VLT   L++I++RF++++ EKKK+             LIFPRYHQLDVV KL+++ ++HG
Sbjct  249   VLTSYQLLDIFERFMNLE-EKKKL-------------LIFPRYHQLDVVKKLISDTQHHG  294

Query  303   SGCNYLIQHSAGSGKSNSIAWIAYRLASLHDEDNNSIFNSVIVVTDRKVLDSQLQDTISG  362
             +G NYLIQHSAGSGKSNSIAW+AY+LASLH +++++I++SVIVVTDR VLD QLQ+T+ +
Sbjct  295   PGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTLMS  354

Query  363   FDHTYGLVETIGDKKTSQDLKNAINDGKKIIVTTLQKFPVIYEDVENNKGKRFAVIVDEA  422
             F+HT G VETIGD+KTSQDLK AIND KKII+TTLQKFPVIY++++N  G+ FA++VDEA
Sbjct  355   FEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEA  414

Query  423   HSSQTGTSAQKLKIALADNKDALeeyakiegeaeeasedfedKLVSELSTHGRHQNLSFF  482
             HSSQTG+SAQKLK ALAD+  +L EY  +E   E+ S D +D++V  L ++G+H+NLSFF
Sbjct  415   HSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFF  474

Query  483   AFTATPKQKTLEMFGNRCTDGSFHPFHIYSMKQAIEEGFILDVLKNYMTYKTCFKIAKNI  542
             AFTATPK+KT+EMFG + +DGS+HPFHIYSM+QAIEEGFIL+VL+NYMTY+T +KIAK+I
Sbjct  475   AFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSI  534

Query  543   PDNPELPESEAKRAIRRYESLHPYNLQQKTSVMVEYFREITSKKINGQAKAMIITPSRLH  602
              ++PELP +EA RAI +Y+SLHP  L+QK+ +M+E FR +T K ++G++KAMI+T+SRLH
Sbjct  535   EEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLH  594

Query  603   AVRYYKEFKKYIKNKGYNDLDVLIAFSGTVKDGDEEYTESGMNVTKSGNKISEKQLPQVF  662
             AVRY +EFKKYIK+KGY D+DVL+AFSGTV D++ EYTE+ MN+T SG++I E+QL + F
Sbjct  595   AVRYMQEFKKYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQLKEAF  654

Query  663   HGDEFNMLIVAEKYQTGFDEPLLHTMFVDKKLNGVKAVQTLSRLNRTAPYKNDTFILDFV  722
             H+++FN+LIVAEKYQTGFDEPLLHTMFVDK+L GVKAVQTLSRLNRT P K DTFILDFV
Sbjct  655   HSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFV  714

Query  723   NNSEDILLSFAPYYKETALDEEINVNLIYDTKALLRNFRIYNDDDVEKSTKIYYKSGAQS  782
             N +E+I  +F P+Y  T+L EEIN+NLIYDT++ LR+F+IYNDDD++   K+  + + Q 
Sbjct  715   NTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKL-NRQAKQK  773

Query  783   NTAH--GKITSMFLPIIRVYSEISEEDQFKFKKAVRNFIKWYSYITQIERMFDKDLQKEY  840
             +  +  G+++S++ P+I  YS+++E+ Q+ F+ ++RNF KWY+YI+QI+R FDK+L  E 
Sbjct  774   QNDQLLGRLSSVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEES  833

Query  841   RFLQYLEKMLPKNSAEKIDLEDKIKLEYYKLSKTFEGDISLETKD-DCAMLTNPKTIDNV  899
              F  +L K +P +  + ID+EDK+KLEYYKL   F GDI+L   D + + L++P  ++  
Sbjct  834   IFTGFLLKFIPEKQRNYIDIEDKVKLEYYKLQEDFKGDIALVNEDVENGQLAHPSEVNAT  893

Query  900   IGVTGNDELLDAIISKINEVYEGEFSDGDKVMVKTIYGKLLNDSE-KLEQYTKDSF-EIF  957
             +    + + L+ II KINE +  +F++GD+V+VK +   L+N+++ KL + ++++  E+F
Sbjct  894   VRPEEEYDSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAKLVNMAQNNSEEMF  953

Query  958   NDSFFPELFDKATRSCFLEQSNSFKKIF-ENRTFYNTIQQEMARQVYRNYRNR  1009
              +S+F + F+      + +   ++ K+F +NR FY+T+ Q +A++ YR  R++
Sbjct  954   ANSLFQQQFQDFLIDQYNQGEAAYSKMFSNNRDFYDTVYQLLAKDYYRWLRSQ  1006

6) Mevan_0265 in NC_009634


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  903 bits (3419),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 555/1015 (55%), Positives = 772/1015 (77%), Gaps = 24/1015 (2%)

Query  4     KEKRFEQDIESYMLNYGGYAKG--DMSTYDAENAIDLPKLVSFIKSTQEKEWAKYERNYG  61
             KE  FEQDIE+ +++YGG      + + YDA+ A+D   L+ F+K TQ K+W +Y   Y 
Sbjct  8     KEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYVSIYR  67

Query  62    IDSEQKLLKRFNEEVNTHGLLHVLRNGISDRGAKLKVCAFKPESNLNAELVSRYENNILT  121
              ++EQK+LKR+NEE+  HG+LHVLR+GI DRG  +KV  F+P S+LN+E +  YE N + 
Sbjct  68    TNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEANRFQ  127

Query  122   VTRQFAYSTENRNTIDMVLSLNGIPIVAIELKNQITGQSIENGKKQYIYDRNPKELCFHF  181
               RQF YS   RNTIDMVL +NGIP+VA+ELKNQ TGQ++E+++ Q+  DR+PKEL F+F
Sbjct  128   CVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKELIFQF  187

Query  182   NKRFLVYFTADLFEVSMATKLSGKDTTFLPFNQgsggagnvggagnPENTNGYTTSYLWE  241
             N RFLVYF+ D F+V M+TKL+  +T FLPF+QGS G+G VGGAGNP N +GY TSYLWE
Sbjct  188   NSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLWE  247

Query  242   SVLTKDSLMNIIQRFLNVRVEETKITKNGKEVKKTSTKLIFPRYHQldvvtklvddvkkN  301
             +VLT   L++I++RF+N+  EE K              LIFPRYHQLDVV KL+ D + +
Sbjct  248   NVLTSYQLLDIFERFMNL--EEKK------------KLLIFPRYHQLDVVKKLISDTQHH  293

Query  302   GSGNSYLIQHSAGSGKSNSIGWIAYRLASLHDEADKNIFTSVIVVTDRKVLDNQLQDTIS  361
             G+G++YLIQHSAGSGKSNSI+W+AY+LASLH + D+ I++SVIVVTDR VLD QLQ+T+ 
Sbjct  294   GPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTLM  353

Query  362   SFDHKFGLIETIDDKKTSKDLKDAINSGKKIIVTTLQKFPVIYEEVESNHGKRFAVIIDE  421
             SF+H  G +ETI+D+KTS+DLK AIN  KKII+TTLQKFPVIY+E+++  G+ FA+++DE
Sbjct  354   SFEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDE  413

Query  422   AHSSQTGRSAQKLKIALADNKDALEEYAKIEGDVENSTDDFEDKLVKELTSHGRHKNLSF  481
             AHSSQTG SAQKLK ALAD+  +L EY  +E  VE+ + D +D++V+ L S+G+H NLSF
Sbjct  414   AHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSF  473

Query  482   FAFTATPKQKTLEMFGKRYTDGTFHPFHIYSMKQAIEEGFILDVLKNYMTYKTCYKIAKS  541
             FAFTATPK+KT+EMFG + +DG++HPFHIYSM+QAIEEGFIL+VL+NYMTY+T YKIAKS
Sbjct  474   FAFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKS  533

Query  542   TPDNPELPESEARKAIARYESLHPYNLQQKTAVMVEQFREVTSKKINGQAKAMIVTPSRL  601
               ++PELP +EA +AIA+Y+SLHP  L+QK+ +M+EQFR VT K ++G++KAMIVT+SRL
Sbjct  534   IEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRL  593

Query  602   HAVRYYNEFKRYIKHKGYNDLDVLIAFSGTVTDTDGTEYTESGMNKTKAGNKISEKQLPE  661
             HAVRY +EFK+YIK+KGY D+DVL+AFSGTV D DG EYTE+ MN T +G++I E+QL E
Sbjct  594   HAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVED-DGIEYTEPKMNLTHSGERIQENQLKE  652

Query  662   VFHGDEFNMLIVAEKYQTGFDEPLLHTMFVDKKLSGVKAVQTLSRLNRTAKGKNDTFILD  721
              FH+++FN+LIVAEKYQTGFDEPLLHTMFVDK+L GVKAVQTLSRLNRT  GK DTFILD
Sbjct  653   AFHSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILD  712

Query  722   FANETIDIQAAFAPYYKETALDEEINVNLIYDTKVLLRKFNVYGDSDVEKFIKIHYKSGK  781
             F N + +I  AF P+Y  T+L EEIN+NLIYDT+  LRKF++Y D D++  +K++ + +K
Sbjct  713   FVNTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLN-RQAK  771

Query  782   QTDTD--LGKLTSLFRPIQDYYLELSDEDQFKFKRSVRNFVKWYSYITQITRMFDRDLQM  839
             Q + D  LG+L+S++RP+   Y +L+++ Q+ F+ ++RNF KWY+YI+QI R FD++L  
Sbjct  772   QKQNDQLLGRLSSVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLE  831

Query  840   EYDFLYFLNKSLPSNSSERVDLDDKIKLEYYKLDKTFEGNIAL--ETPDTVILENPKSID  897
             E  F  FL K +P +  + +D++DK+KLEYYKL+  F G+IAL  E  +   L +P  ++
Sbjct  832   ESIFTGFLLKFIPEKQRNYIDIEDKVKLEYYKLQEDFKGDIALVNEDVENGQLAHPSEVN  891

Query  898   VEKPKEGKDELLEVIIQSINDRFNGIFTDGDKVIIETIYGRIVNNDGERIAKYAEDSF-E  956
                  E   + L+ II+ IN+RF   FT+GD+V++  +   ++NN + ++ + A+++  E
Sbjct  892   ATVRPEEEYDSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAKLVNMAQNNSEE  951

Query  957   IFNDSFFPKVFDEVARSCFLEQTKAFKKIF-ENKEFYNTIQQEMARQVYRKFKNR  1010
             +F +S+F + F++     + +   A+ K+F +N++FY+T+ Q +A++ YR ++++
Sbjct  952   MFANSLFQQQFQDFLIDQYNQGEAAYSKMFSNNRDFYDTVYQLLAKDYYRWLRSQ  1006

7) CLOST_1262 in NC_014614


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  901 bits (3414),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 551/1014 (55%), Positives = 770/1014 (76%), Gaps = 23/1014 (2%)

Query  4     KEKRFEEDIETYLLNHGGY--IQKNMVGFDKANCIYLSELIYFIRSTQENEWERYEKIYG  61
             KE  FE+DIE+ L++ GG   ++ +   +D    +  + L+ F++ TQ ++W RY  IY 
Sbjct  8     KEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYVSIYR  67

Query  62    VESEKKFLKRFNEEVNTHGILHVLRNGINDRGVKLKVCYFKPESTLNQKLVKNYNSNILS  121
              ++E+KFLKR+NEE+  HGILHVLR+GI DRGV +KV YF+P S+LN   +KNY++N + 
Sbjct  68    TNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEANRFQ  127

Query  122   VVRQFAYSVENNNTIDMVLTLNGIPLVALELKNQITGQSVENAKKQFMYDRNPKEYCFHF  181
              VRQF YS    NTIDMVL +NGIPLVALELKNQ TGQ+VE+A+ QF  DR+PKE  F+F
Sbjct  128   CVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKELIFQF  187

Query  182   NKRFLVYFAVDLFEVFMATELKGKDTFFLPFNQgsggagkvggsgNPENPNGYNTSYLWE  241
             N RFLVYFAVD F+V+M+T L   +T+FLPF+QGS G+G+VGG+GNP NP+GY TSYLWE
Sbjct  188   NSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLWE  247

Query  242   NVLSKDSFLNIIQRFLHVSVERKKVLKDDKEIMKLSKKLIFPRFHQLDVVTKLIDDVKIN  301
             NVL+   +L+I++RF+++  E+KK+L             IFPR+HQLDVV KLI D + +
Sbjct  248   NVLTSYQLLDIFERFMNLE-EKKKLL-------------IFPRYHQLDVVKKLISDTQHH  293

Query  302   GSGKNYLIQHSAGSGKSNSIAWSCYRLASLHDEHNNSIFTSVIVVTDRKVLDNQLQDTIS  361
             G+GKNYLIQHSAGSGKSNSIAW  Y+LASLH +++++I++SVIVVTDR VLD QLQ+T+ 
Sbjct  294   GPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTLM  353

Query  362   SFDHAYGLVETIGDGKSSKDLKDAINDGKKIIVTTLQKFPVIYEEVENNKGKRFAIIVDE  421
             SF+H+ G VETIGD K+S+DLK AIND KKII+TTLQKFPVIY+E++N  G+ FAI+VDE
Sbjct  354   SFEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDE  413

Query  422   AHSSQTGSSAQKLKTALADNEEALREFARIEGE-EEANIEDFEDKLIKELLTHGKHKNLS  480
             AHSSQTGSSAQKLK ALAD+E +L+E+  +E   E+ +++D +D++++ LL++G+H NLS
Sbjct  414   AHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDD-QDQIVQTLLSQGQHDNLS  472

Query  481   FLAFTATPKQKTLEMFGTQHTDGTFHPFHIYSMKQAIEEEFIHDVLANYMTYKTCFKIAK  540
             F+AFTATPK+KT+EMFGT+++DG++HPFHIYSM+QAIEE FI +VL NYMTY+T +KIAK
Sbjct  473   FFAFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAK  532

Query  541   STPDNPELPESEAKKAIKRYESLHPYNLQQKTAVMIEYFRDVTMHKIGGRAKAMVVTASR  600
             S  ++PELP +EA +AI +Y+SLHP  L+QK+ +MIE FR VT   + GR+KAM+VTASR
Sbjct  533   SIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASR  592

Query  601   LHAVRYFLEFKRYIDKKGYKDLDVLVAFSGSVKDKDEEYTETGLNITKEGSRISEKQLPE  660
             LHAVRY  EFK+YI  KGY D+DVLVAFSG+V D + EYTE  +N+T  G RI E+QL E
Sbjct  593   LHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQLKE  652

Query  661   LFSTDEFNILVVAEKYQTGFDEPLLHTMFVDKKLSGVKAVQTLSRLNRTMLGKTDTFVMD  720
              F +++FN+L+VAEKYQTGFDEPLLHTMFVDK+L GVKAVQTLSRLNRTM GKTDTF++D
Sbjct  653   AFHSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILD  712

Query  721   FVNEAEDIKEAFEPFYKETVLDKEINVNLIYDTKISIRQFLLYNDSDVEKFNNIYYKEKQ  780
             FVN AE+I EAF+PFY  T L  EIN+NLIYDT+  +R+F +YND D++   ++  + KQ
Sbjct  713   FVNTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQ  772

Query  781   SSTD--LGKITSLYTPILKQYNNLSLEERFMFKKSVRNYVKWYAYIVQITRMFDKDLQKE  838
                D  LG+++S+  P++ +Y++L+ + ++ F+ ++RN+ KWY YI QI R FDK+L  E
Sbjct  773   KQNDQLLGRLSSVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEE  832

Query  839   YNFLKYMDKVLPKNSQEQVDLEDKIKLEFYKLEKSFEGEVILGNDE-NKGVLTNVETVDV  897
               F  ++ K +P + ++ +D+EDK+KLE+YKL+  F G++ L N++ ++G L++   V+ 
Sbjct  833   SIFTGFLLKFIPEKQRNYIDIEDKVKLEYYKLQEDFKGDIALVNEDVENGQLAHPSEVNA  892

Query  898   SKGKDKKDELLENIINHINQRYMGIFSEGDRVIVETMFNkvkledkklkkyakkNNM-EV  956
             +   +   + L++II+ IN+R+   F++GDRV+V  M + +  +         +NN  E+
Sbjct  893   TVRPEEEYDSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAKLVNMAQNNSEEM  952

Query  957   FSESIFPKVFADVAQECYEEQMGAFKKLF-EDKSFYTAIMNEIAKETYRELRNQ  1009
             F++S+F + F D   + Y++  +A+ K+F +++ FY ++ + +AK+ YR LR+Q
Sbjct  953   FANSLFQQQFQDFLIDQYNQGEAAYSKMFSNNRDFYDTVYQLLAKDYYRWLRSQ  1006

8) SELR_pSRC600110 in NC_017070


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  819 bits (3102),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 511/991 (52%), Positives = 744/991 (76%), Gaps = 18/991 (1%)

Query  1    MAENEKQFEANIEEYLISPAGGYQQA--DDSGYRESIDMALDIKTLVRFVKTTQPLVWQR  58
            + ++E +FE +IE  L+   GG +    +D+ Y  +I  ALD   L+ FVK TQP  W+R
Sbjct  5    IKNKEINFEQDIEASLV-QYGGWESVRFQDTHYDANI--ALDPTVLLEFVKQTQPKNWKR  61

Query  59   FEKQCNSDPLRKFYKCFEDAVQADGLVSVLRHGFRHRGMDFKVCYFKPESTLNDLAVKHY  118
            +     +++ +KF K +++ +  +G++ VLR G+R+RG+ FKV YF+P S+LN   +K+Y
Sbjct  62   YVSIYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNY  121

Query  119  KQNICQCIRQWHYSAQNNNSVDMMLAINGIPLVAIELKNQLTGQSIDNAKTQWMYDRDYR  178
              N  QC+RQ +YS +  N++DM+L INGIPLVA+ELKNQ TGQ++++A+ Q   DRD +
Sbjct  122  EANRFQCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPK  181

Query  179  EPIFKLNHRILAFFAVDLYQAAMTTELKGANTFFLPFNQgsngagydggagnPQTENGDY  238
            E IF++N R+L +FAVD ++  MTT L  +NT+FLPF+QGSNG+G  GGAGNP   +G Y
Sbjct  182  ELIFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSG-Y  240

Query  239  VTGYIWKNVLQKDSLLDILQKFVNFQGNR--LIFPRYHQLDVVRKLIFDVREYGSGRNYL  296
             T+Y+W NVL    LLDI+++F+N++ ++  LIFPRYHQLDVV+KLI D ++ G+G+NYL
Sbjct  241  PTSYLWENVLTSYQLLDIFERFMNLEEKKKLLIFPRYHQLDVVKKLISDTQHHGPGKNYL  300

Query  297  IQHSAGSGKSNSIAWTAYRLASLHNADNEPIFTSVVIVTDRRNLDAQLQETIMGFDHTIG  356
            IQHSAGSGKSNSIAW AY+LASLH+ +++PI++SV++VTDR  LD QLQ+T+M+F+HT+G
Sbjct  301  IQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVG  360

Query  357  SVETIGEKKTSQDLKKAINAGKRIIVTTLQKFPVIYEEVKDTAGKRFAIIVDEAHSSQTG  416
             VETIG++KTSQDLK AIN  K+II+TTLQKFPVIY+E+ +TAG+ FAI+VDEAHSSQTG
Sbjct  361  QVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTG  420

Query  417  SSamkmkvaladkadalkeyaelegkaeeellDNEDRLVQEMIAHGRHDNLSFFAFTATP  476
            SSA K+K ALADK  +LKEY E+E   E++ LD++D++VQ ++++G+HDNLSFFAFTATP
Sbjct  421  SSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATP  480

Query  477  KEKTLEQFGTEYEDGSFHPFHIYSMRQAIEEGFILDVLANYTTYKTCYQIARNVTENPAV  536
            KEKT+E FGT   DGS+HPFHIYSMRQAIEEGFIL+VL NY TY+T Y+IA+++ E+P +
Sbjct  481  KEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPEL  540

Query  537  PQSKALKLIRRFSELHPYNIQQKSALIVETFREVTKHKIKGKGKMMVVTSSRLAAVRYFH  596
            P++ A++ I ++  LHP  ++QK+ +++E FR VT+  ++G+GK M+VT+SRL AVRY +
Sbjct  541  PKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQ  600

Query  597  EIKRYLKTHNYHDIEILAAFSGSIKDPEDASDKEYTESGLNVDAAGNHVSEAQTKQVFHD  656
            E+K+Y+K   Y D+++L AFSG++    +  + EYTE+ +N+  +G+++ E Q K+ FH 
Sbjct  601  EFKKYIKEKGYTDMDVLVAFSGTV----EDDGIEYTEPKMNLTHSGERIQENQLKEAFHS  656

Query  657  EG-HILIVAEKYQTGFDEPLLHTMIVDKKLKGVKAVQTLSRLNRIHPDKEDTYILDFVNT  715
            E+ ++LIVAEKYQTGFDEPLLHTM+VDK+L+GVKAVQTLSRLNR  P+K DT+ILDFVNT
Sbjct  657  EDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNT  716

Query  716  KEDILAAFQPFYQETYLEEELNTDLIYKVQKMLRDYKIYDDNDIENVSKIYFDENARKAN  775
             E+I  AFQPFY+ T L EE+N +LIY  Q  LR + IY+D+DI+ V K+  + + ++ +
Sbjct  717  AEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQND  776

Query  776  KTQAAITNTLLPIQQRYNDLNQEQRYQFRKLCRNLVKWYAYITQITRMFDKPLHKEYIFC  835
            +  + +++ L P+  RY+DL ++ +Y+FR   RN+ KWY YI+QI R FDK L  E IF 
Sbjct  777  QLLGRLSSVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFT  836

Query  836  SYLAKILPSDPEVPFDLGNRVRLEYYNLQKTFSGSISLVKE--EKGAFA-SAKLKKPVKQ  892
            ++L K++P      +D+ ++V+LEYY+LQ  F G I+LV+E  E+G +A ++ ++  V+ 
Sbjct  837  GFLLKFIPEKQRNYIDIEDKVKLEYYKLQEDFKGDIALVNEDVENGQLAHPSEVNATVRP  896

Query  893  EETLSPLEEVIAKINEQYLGDFTEGDRVVITTLHEKLRQNK--KLQKAAQNNGAQMFANN  950
            EE   +L+E+I KINE++  DFT+GDRV++  ++E L +N   KL + AQNN+ +MFAN+
Sbjct  897  EEEYDSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAKLVNMAQNNSEEMFANS  956

Query  951  VFPSIFDDTAQAAYMESTETYTRLFQDAEKY  981
            +F   F+D     Y ++  +Y+++F +   +
Sbjct  957  LFQQQFQDFLIDQYNQGEAAYSKMFSNNRDF  987

9) ELI_1146 in NC_014624


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  804 bits (3042),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 502/1028 (49%), Positives = 739/1028 (72%), Gaps = 36/1028 (3%)

Query  1     MNETEKRFEEFIETYLVSEDGGWTKA--TDAGYCSDESKDMFLDIVTLSDFVKSTQPMAW  58
             +++ E  FE+ IE+ LV + GGW      D+ Y ++ +    LD   L +FVK TQP  W
Sbjct  5     IKNKEINFEQDIEASLV-QYGGWESVRFQDTHYDANIA----LDPTVLLEFVKQTQPKNW  59

Query  59    KRFERMCTINPIRQFYKAFENAVTQDGLISVLRHGFKHRGINFRVCYFKPESELNEVSIT  118
             KR+  +   N+ ++F K +++ +T++G++ VLR G+++RG++F+V YF+P S LN  +I 
Sbjct  60    KRYVSIYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIK  119

Query  119   NYQKNVCQCIRQWHYSKRNTNTVDMMLAVNGIPVVAIELKNQLTGQSVDDAMRQWQYDRN  178
             NY+ N  QC+RQ +YS++  NT+DM+L +NGIP+VA+ELKNQ TGQ+V++A  Q + DR+
Sbjct  120   NYEANRFQCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRD  179

Query  179   PNEPAFGFNKRVLAYFACDLYNVYMTTQLKGPETTFLPFNQgsagagkdggagNPKSTDG  238
             P+E  F FN R L YFA D +NV MTT+L   +T FLPF+QGS G+G+ GGAGNP +  G
Sbjct  180   PKELIFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSG  239

Query  239   SYVTSYFWEKVLQKDSLLDILQKFINYERTEKKETLPDGSTKKTVSSKVIFPRYHQLDVV  298
              Y TSY+WE+VL    LLDI+++F+N E  EKK  L             IFPRYHQLDVV
Sbjct  240   -YPTSYLWENVLTSYQLLDIFERFMNLE--EKKKLL-------------IFPRYHQLDVV  283

Query  299   RQLVNHVRTNGAGHNYLIQHSAGSGKSNSIAWTAYRMASLHNENNDAIFNSVIIITDRRI  358
             ++L+++ + +G+G NYLIQHSAGSGKSNSIAW AY++ASLH++++++I++SVI++TDR +
Sbjct  284   KKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTV  343

Query  359   LDQQLQATVSSFDHTLGSVVTIDEKKNSGALRDAINNGKRIIVTTLQKFPVIYNEVESAV  418
             LD+QLQ T+ SF+HT+G V TI+++K S  L+ AIN+ K+II+TTLQKFPVIY+E++++ 
Sbjct  344   LDRQLQNTLMSFEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTA  403

Query  419   GKHYAVIVDEAHSSQTGQSALKLKAALADVSDalae-yaeleekaieeveaNDILVQEML  477
             G+ +A++VDEAHSSQTG SA KLK ALAD   +L E     E    + ++ +D +VQ +L
Sbjct  404   GRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLL  463

Query  478   SQGKHSNISFFAFTATPKGKTLEIFGEPQPDGSFHPFHIYSMRQAIEEGFILDVLANYTT  537
             SQG+H N+SFFAFTATPK KT+E+FG  Q+DGS+HPFHIYSMRQAIEEGFIL+VL NY T
Sbjct  464   SQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMT  523

Query  538   YKMCYQIAKNVQDNPEVPTSKAVRTIRRYEELHPHNLQQKAAIIVETFREVTKKKIGGRG  597
             Y+  Y+IAK+++++PE+P + AVR+I +Y+ LHP  L+QKA I++E FR VT+K + GRG
Sbjct  524   YNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRG  583

Query  598   KMMVVTASRLAAVRYYHEIKRYLESNNYDDVEIMIAFSGSLKDPDDPTGTEYTESGMNVD  657
             K M+VTASRL AVRY +E+K+Y+  + Y D+++++AFSG++ D     G EYTE+ MN+ 
Sbjct  584   KAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVED----DGIEYTEPKMNLT  639

Query  658   RNGNRVKESQTKAVFHEEG-NILIVAEKYQTGFDEPLLHTMIVDKELRDVKAVQTLSRVN  716
             ++G+R++E+Q K  FH E+ N+LIVAEKYQTGFDEPLLHTM+VDK LR+VKAVQTLSR+N
Sbjct  640   HSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLN  699

Query  717   RIYPGKEDTYILDFVNPIERIREAFQQFYQETSLDEEINFDLIYTTQKTLRGFGIYTDED  776
             R  PGK DT+ILDFVN  E I EAFQ FY+ TSL EEIN++LIY TQ  LR F IY D+D
Sbjct  700   RTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDD  759

Query  777   IEEVSSIYFDPDVRKANLTQGKISNALKPVADKYNELNQEQRYQFRREVRALVKWYNYIS  836
             I+ V  +  ++  ++ +   G++S+ L+PV  +Y++L ++ +Y+FR  +R + KWYNYI+
Sbjct  760   IQTVMKLNRQAKQKQNDQLLGRLSSVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIA  819

Query  837   QITRMFDKELHKEYVFCSYLAKLLPSDPVQPFDLDNRVKLEYYRLEKTYEGAIEL---ES  893
             QI R FDKEL  E +F ++L K++P    + +D++++VKLEYY+L+  + G I L   + 
Sbjct  820   QIDRTFDKELLEESIFTGFLLKFIPEKQRNYIDIEDKVKLEYYKLQEDFKGDIALVNEDV  879

Query  894   KPGSW-KPTQPKRAGGQKDRTSPLDEIIQRINEEFYGEFTDADRVMVDTLYQKMRKDSKA  952
               G    P++ + +    +   +L+EII++INE F  +FT++DRV+V  + + + +++ A
Sbjct  880   ENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDA  939

Query  953   KKAAKTEDR--QVYERSLFPGIFDTTAQEAYMENTAAYEQLFLDADK-YQAVMRALADRL  1009
             K    +++   +++  SLF   F+    + Y +  AAY ++F +    Y++V + LA   
Sbjct  940   KLVNMAQNNSEEMFANSLFQQQFQDFLIDQYNQGEAAYSKMFSNNRDFYDTVYQLLAKDY  999

Query  1010  YKELHDDK  1017
             Y+ L+ +K
Sbjct  1000  YRWLRSQK  1007

10) CLM_2294 in NC_012563


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  790 bits (2989),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 495/965 (52%), Positives = 724/965 (76%), Gaps = 29/965 (3%)

Query  32   NFNRELALDNETLIEFIKKTQPKKWERYVTIYGSASEESFIKRFNKEVKTNGLLAILRRG  91
            +++ ++ALD   L+EF+K+TQPK+W RYV+IY + +E+ F+KR+N E+  +G+L +LR+G
Sbjct  35   HYDANIALDPTVLLEFVKQTQPKNWKRYVSIYRTNAEQKFLKRLNEEITNHGILHVLRKG  94

Query  92   FKDRGIKFDVVYFKPANTDNTDRVKLYNENILHCTRQLHYSVFNENSIDIVLFLNGIPVV  151
            ++DRG+ F VVYF+PA++ NT+ +K Y+ N ++C RQ++YS    N+ID+VL +NGIP+V
Sbjct  95   IRDRGVSFKVVYFQPASSLNTENIKNYEANRFQCVRQFQYSNKYRNTIDMVLMINGIPLV  154

Query  152  SMELKCQFTGQTIHNAINQYKFDRASKDAIFDFRNRVLVHFAVDLFEVHMTTRLNGENTY  211
            ++ELK Q+TGQ +++A  Q+  DR +K+ IF+F +R LV FAVD F+V MTT+L   NTY
Sbjct  155  ALELKNQYTGQNVEHARLQFEQDRDPKELIFQFNSRFLVYFAVDHFNVLMTTKLAKGNTY  214

Query  212  FLPFnqgsngsgnvggagnPLNPKGYQTAYLWEKVLCKDRLMEILHKYMHLKKEDKKDAD  271
            FLPF+QGSNG+G VGGAGNP NP GY T+YLWE+VL   +L++I++++M+L  E+KK   
Sbjct  215  FLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLWENVLTSYQLLDIFERFMNL--EEKKK--  270

Query  272  SKVISTEETLIFPRYHQLDAVTKLLEDVKKNGAGKNYLIQHSAGSGKSNSIAWLAHRLSG  331
                     LIFPRYHQLD V KL+ D + +G+GKNYLIQHSAGSGKSNSIAWLA +L++
Sbjct  271  --------LLIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLAS  322

Query  332  LHDDNNNPIYKSIIVVTDRRVLDSQLQDTIYQFDHVLGVVECIDKKKHAVDLRDAINAGK  391
            LH ++++PIY S+IVVTDR VLD QLQ+T+  F+H +G VE I+ +K + DL+ AIN  K
Sbjct  323  LHSNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETIGDNKTSQDLKTAINDQK  382

Query  392  RIIITTLQKFPVIYKEIQTDG--NFAIIVDEAHSSQTGEASKKLKKALTNTDDILeeyra  449
            +IIITTLQKFPVIY EI+  +  +FAI+VDEAHSSQTG +++KLK AL++ +  L EY+ 
Sbjct  383  KIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQE  442

Query  450  meneaeenVKDDEDKMLDELASHGRIDNLSFFAFTATPKEKTLQMFGDKQSDGTYRAFHI  509
             E+  E++  DD+D++++ L S+G+ DNLSFFAFTATPKEKT++MFG KQ+DG+Y++FHI
Sbjct  443  FEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFHI  502

Query  510  YSMRQAIEEHFILDVLKNYTTYKMYYkiakkvaddpdvdvskGAKEIARYESLHPHNLAQ  569
            YSMRQAIEE FIL+VL+NY TY+  YKIAK + +DP++  + + + IA+Y+SLHP  L Q
Sbjct  503  YSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQ  562

Query  570  KTDIMIEHFRSITKNKIGGRAKAMLVTASRLHAVRYLFEFRRYIKEKGYTDLDVLVAFSG  629
            K++IMIE+FRS+T++ + GR+KAM+VTASRLHAVRY+ EF++YIKEKGYTD+DVLVAFSG
Sbjct  563  KAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSG  622

Query  630  TVNDPDIPDTDFTEEGLNKDKQGNTIKEDQLKEEFHNDDFNMLIVAEKYQTGFDEPLLHT  689
            TV+D +I   ++TE  +N    G+ I+E+QLKE FH++DFN+LIVAEKYQTGFDEPLLHT
Sbjct  623  TVEDDGI---EYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHT  679

Query  690  MFVDKKLSGVKAVQTLSRLNRTMKGKEDTFVLDFVNNAEDIQKAFQPYYEATVLEQETDP  749
            MFVDK+L GVKAVQTLSRLNRTM GK DTF+LDFVN AE+I  AFQP+YEAT L +E + 
Sbjct  680  MFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEINI  739

Query  750  NVIYDLKNGLDSFQIYQPTEVEHFAQIFYGKDNKDAQAL---LTGCIKPALDRYNVKEDK  806
            N+IYD ++ L  F+IY+  +++   ++     +K+ + L   L++ ++P + RY+   + 
Sbjct  740  NLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLLGRLSSVLRPVISRYSDLPED  799

Query  807  DREEFKSSLATFVRIYSFIIQVCRMYDKDMQKFFVYARFLGKCLPKGENEKVDLSDKLIL  866
             + +F+ +L  F + Y++I Q+ R +DK++    +++ FL K +P  + + +D+ DK+ L
Sbjct  800  VQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFTGFLLKFIPEKQRNYIDIEDKVKL  859

Query  867  EYYKLDKTFSGDIALEKTE---GYVANikggiggkekke--DPLSVIIDKMNERFGTAFS  921
            EYYKL+  F GDIAL + +   G +A+     +     E  D+L+ II+K+NERF   F+
Sbjct  860  EYYKLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPNDFT  919

Query  922  EQDKVL-EQMKSDF--AKDEKIVNAVKSDDKSLF-KYLYEQKFKDVAVNRYEENDKFFMS  977
            + D+VL  +M+  +    D K+VN  +++   +F + L++Q+F+D  +++Y++ +  +  
Sbjct  920  QGDRVLVKNMRETLINNTDAKLVNMAQNNSEEMFANSLFQQQFQDFLIDQYNQGEAAYSK  979

Query  978  LFSDE  982
            +FS++
Sbjct  980  MFSNN  984

11) hsdR2 in NC_010163


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  726 bits (2747),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 477/1005 (48%), Positives = 739/1005 (74%), Gaps = 14/1005 (1%)

Query  1     MKDNEKRFEEDIESHLIN-QEYRKLSMQG--YDVSKGIYLDILVEFIKKTQSKSWERYEK  57
             +K++E  FE+DIE+ L++      +  Q+  YD + ++   +L+EF+K+TQ+K+W RY  
Sbjct  5     IKNKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYVS  64

Query  58    YYGDEAPNKLYRRLEDSISHHGLLHVLRNGIKDMGIDLFICFFKPESELNPTLVERYEGN  117
              Y  +A +K+ +RL++ I++HG+LHVLR+GI+D G+ + + +F+P S LN   +  YE+N
Sbjct  65    IYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEAN  124

Query  118   ILGVTRQFAYSPFNNNTIDMVLSINGIPFIAIELKNQLKGQDYRNAMHQWRYNRDPKELI  177
              +   RQF YS    NTIDMVL INGIP++A+ELKNQ  GQ+  +A  Q   +RDPKELI
Sbjct  125   RFQCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKELI  184

Query  178   FRFNHRILVYFAVDLYETWMTTELKGADTHFLPFnqgsngsgvsggagnPQNPYGYTTSY  237
             F+FN R+LVYFAVD ++  MTT L  ++T FLPF+QGSNG+G  GGAGNP NP GY TSY
Sbjct  185   FQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSY  244

Query  238   LWEDVLSKNSIIDILHRFISNPKDSKKIIFPRYHQYdvvkkvlsdvkdNGVGQKYLIEHS  297
             LWE+VL+   ++DI++RF++     K +IFPRYHQ DVVKK++SD +++G G++YLI+HS
Sbjct  245   LWENVLTSYQLLDIFERFMNLEEKKKLLIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHS  304

Query  298   AGSGKSNSIAWIAYRLASVHDIDDKPIFDSVIIVTDRVVLDSQLQDTINGFEHRAGLVEA  357
             AGSGKSNSIAW+AY+LAS+H  +D+PI+ SVI+VTDR VLD QLQ+T+ +FEH  G VE+
Sbjct  305   AGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVET  364

Query  358   IDDKKRSRGLTEAINDKKRIIICTIQKFLFAYKDFDEMEGRKFAIIVDEAHQGQTGASAK  417
             I+D+K S++L  AIND+K+III T+QKF   Y ++D+  GR FAI+VDEAH +QTG+SA+
Sbjct  365   IGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTGSSAQ  424

Query  418   TLRRALIDKKVAIKEYAEMegieedev-ddtdelvaevLAQGQHSNQSFFAFTATPKNKT  476
              L++AL DK  ++KEY E E   ED+  DD D++V  +L+QGQH N SFFAFTATPK+KT
Sbjct  425   KLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKT  484

Query  477   IELFGRRNPSTGKHEPFHVYSMRQAIEEGFILDVLKYYTTLQDQFKIVRTTRDNPEVIEG  536
             IE+FG +++  G  +PFH+YSMRQAIEEGFIL+VL+ Y T +  +KI ++  ++PE+   
Sbjct  485   IEMFGTKQAD-GSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKT  543

Query  537   QAKRVLVRYYKEHGFTIHKKTELIMDNFLNNGQFRIDGKAKAMVVADSRHNAVRYYHAIQ  596
             +A R + +Y   H   +++K+E+++++F +  Q  ++G++KAM+V+ SR +AVRY + ++
Sbjct  544   EAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFK  603

Query  597   EYIKDNPDITSNIGVLVAFSGEVKLDGKSYREAEMNIDSEGHYINSDKKLRKAFRSDKFN  656
              YIK++    ++++VLVAFSG V  DG  Y E+ MN+   G+ I+ +++L+ AF+S+ FN
Sbjct  604   KYIKEKG--YTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQ-ENQLKEAFHSEDFN  660

Query  657   ILVVANKYQTGFDEPLLHSMYVDKKLHGVNAVQTLSRMNRVYPGKVDTFVMDFVNTHEDM  716
             +L+VA+KYQTGFDEPLLH+M+VDK+L+GV+AVQTLSR+NR  PGK DTF++DFVNT E++
Sbjct  661   LLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEI  720

Query  717   KKSFQPFFETTYLDGQTDYNRVYDLRTKIHSYMLYNDQDVDLFakikidaakkqddkaLG  776
               +FQPF+E+T L  + + N +YD ++K++ + +YND+D++   K++ +A +KQ+D+ LG
Sbjct  721   YEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLLG  780

Query  777   RVTSILKPVIDQYLELDEKQKYEYRDLLRKFNHAYSYITQIVRINDKELFKEFMFISYLI  836
             R++S+L+PVI +Y +L E  +Y++R  LR+FN  Y+YI+QI R  DKEL+ E +F ++L+
Sbjct  781   RLSSVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFTGFLL  840

Query  837   NLLPKDTAEKISIDDKINLEFAKLKETYKGSIELEKTSVD---LKPEQSVDAKRKPKSK-  892
             +++P    + I I+DK++LE+ KL+E +KG I L +  V+   L     V+A  +P    
Sbjct  841   KFIPEKQRNYIDIEDKVKLEYYKLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPEEEY  900

Query  893   DTLQSIIDKVNEQYMGQFTDSDKVIISGIFEMFMNDPEVKKYAQYAKENNPEMFIKSLFP  952
             D+L+ II+K+NE++  +FT++D+V++  + E ++N+ +  K  + A++N+ EMF +SLF 
Sbjct  901   DSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDA-KLVNMAQNNSEEMFANSLFQ  959

Query  953   DKFKDIALRLFTENHESFEKLFTDT-SFYERVMDAMAKELYKKLR  996
             ++F+D+ +  + + + ++ K+F++   FY+ V + +AK+ Y+ LR
Sbjct  960   QQFQDFLIDQYNQGEAAYSKMFSNNRDFYDTVYQLLAKDYYRWLR  1004

12) RBAU_0696 in NC_022075


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  681 bits (2575),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 437/998 (44%), Positives = 678/998 (68%), Gaps = 40/998 (4%)

Query  2    AIDTTETGFETNIELALIANGYKKRVLGGAASSSFKQH-AIDVEELFAFLEDTQEKRMRT  60
             I   E  FE +IE +L+   Y  +       + +  + A+D   L+ F+ +TQ K  + 
Sbjct  4    VIKNKEINFEQDIEASLVQ--YGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKR  61

Query  61   LEKSYGPTYKEQVLKRIKDQLHKQGLVECLRKGIKDRGVTLQLAYNQPPTDMNKTLNEQY  120
                Y     ++ LKR+++++ ++G+++ LRKGI+DRGV++++ Y QP++ +N     +Y
Sbjct  62   YVSIYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNY  121

Query  121  RKNRFNVARQVFYSDKHNNSLDMVLFLNGLPLVVMELKNPLTNQTVEDAMKQLKNDRDPR  180
              NRF+  RQ  YS+K  N++DMVL +NG+PLV +ELKN  T Q VE+A  Q+ +DRDP+
Sbjct  122  EANRFQCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPK  181

Query  181  EQLFKFNERVAVYFAVDPDEVFMTTKLNKGKTYFLPFnkgnn----ggkgnPLTYGDNYR  236
            E +F+FN R  VYFAVD  +V+MTTKL KG+TYFLPF++G+N     G +   +    Y 
Sbjct  182  ELIFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYP  241

Query  237  THYLWEDILAPDSLLDIIYRFIFIKKDDIKDSNGETIGERQMLIFPRFHQLDVVRKLEAD  296
            T YLWE++L++  LLDI+ RF+     ++ +        +++LIFPR+HQLDVV+KL +D
Sbjct  242  TSYLWENVLTSYQLLDIFERFM-----NLEEK-------KKLLIFPRYHQLDVVKKLISD  289

Query  297  VAQKLVGQNYLIQHSAGSGKTNSISWLAHRLAKLHNEENESIFSSVIVITDRRVLDKQLQ  356
              +   G+NYLIQHSAGSGK+NSI+WLA +LA LH++E+++I+SSVIV+TDR VLD+QLQ
Sbjct  290  TQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQ  349

Query  357  DAVYQLEHKAGMVEPV--DKNSEQLARAINSETRIIITTLQKFPFILEKVAGLERKKYAV  414
            +++  +EH  G VE +  +K S++L  AIN + +IIITTLQKFP I + +     + +A+
Sbjct  350  NTLMSFEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAI  409

Query  415  IIDEAHSSQGGKASTALTNVLSDKTLE-AAYEE-DRIAEENLVDVDEKIVEAILKSGKQD  472
            ++DEAHSSQ G ++  L + L+DK      Y+E +   E++ +D +++IV+++L  G++D
Sbjct  410  LVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHD  469

Query  473  NVSFFAFTATPKPKTLEKFGTVGIDGKPEAFHQYTMRQAIEEGFILDVLENYTTYKTFWK  532
            N+SFFAFTATPK KT+E FGT   DG  ++FH Y+MRQAIEEGFIL+VL+NY TY+T  K
Sbjct  470  NLSFFAFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYK  529

Query  533  IAKTVEDDPEVSKKQATKKLAQYVSLHPHSIAQKTEIIIEHYRNFVQRKIGGRAKAMVVT  592
            IAK++E+DPE++K +A + +A+Y SLHP  + QK+EI+IE++R+  Q+ + GR+KAM+VT
Sbjct  530  IAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVT  589

Query  593  ASRLHAVRYKIAFDKYIHEKGYNDLKTVVAFSGTVKDGGIDYTEPDMN------SFSEKE  646
            ASRLHAVRY   F KYI EKGY D+  +VAFSGTV D+GI+YTEP MN       + E++
Sbjct  590  ASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQ  649

Query  647  LPDKFNSDEFKVLLVAEKYQTGFDEPLLHTMYVDKPLSGIKAVQTLSRLNRTCPGKEDTF  706
            L + F+S++F++L+VAEKYQTGFDEPLLHTM+VDK L G+KAVQTLSRLNRT PGK DTF
Sbjct  650  LKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTF  709

Query  707  VLDFVNEPEVMKASFQPYYESTSLSEITDPNILYDMQADIEPHQVFKEDEVQRVNELEVT  766
            +LDFVN +E +  +FQP+YE+TSL E  + N++YD Q+ +   +++++D++Q V  L+  
Sbjct  710  ILDFVNTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQ  769

Query  767  DGVKKSTKAQTELNAILDKGVERYKKLSEEEQFDFKQAATKFIRTYSFVLQVVTFIDLSL  826
               K++ +    L+++L   + RY  L+E+ Q+DF+ +  +F + Y+++ Q+   +D  L
Sbjct  770  AKQKQNDQLLGRLSSVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKEL  829

Query  827  HKQYIYLTYLLRKLPRTTGDKDVY--LADDIALEYYRNQKVFEGSIEL--EKTGGIELDP  882
              + I+  +LL+ +P    +   Y  + D + LEYY+ Q  F G I L  E     +L  
Sbjct  830  LEESIFTGFLLKFIPEKQRN---YIDIEDKVKLEYYKLQEDFKGDIALVNEDVENGQLAH  886

Query  883  QKHGAGGV-AEDEKVRLSSVLEKLNERFGTQFTETDFLSREQVKEDMLNDDD--LRQKAK  939
              +  + V +E+E   L+ +++K+NERF  +FT+ D +   +++E ++N+ D  L + A+
Sbjct  887  PSEVNATVRPEEEYDSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAKLVNMAQ  946

Query  940  NNTKENFKFA-FEKTFMNFVIDRMSSNQEFFMRILEND  976
            NN+ E F  + F++ F +F+ID+ +  +  + +++ N+
Sbjct  947  NNSEEMFANSLFQQQFQDFLIDQYNQGEAAYSKMFSNN  984

13) BSUW23_03435 in NC_014479


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  677 bits (2561),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 435/998 (44%), Positives = 681/998 (69%), Gaps = 40/998 (4%)

Query  2    AIDTTETGFETNIELALIA-NGFKKRVLEGEASSSFKQHAIDVEELFAFLEDTQEKRMRT  60
             I   E  FE +IE +L+   G     +++    +  + A+D   L+ F+ +TQ K  + 
Sbjct  4    VIKNKEINFEQDIEASLVQYGGWESVRFQDTHYDA--NIALDPTVLLEFVKQTQPKNWKR  61

Query  61   LEKSYGPTYKEQVLKRIKDQLHKQGLVECLRKGIKDRGVTLQLAYNQPPTDMNKTLNEQY  120
                Y     ++ LKR+++++ ++G+++ LRKGI+DRGV++++ Y QP++ +N     +Y
Sbjct  62   YVSIYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNY  121

Query  121  GKNRFNVARQVFYSDKHNNSLDMVLFLNGLPLVVMELKNPLTNQTVEDAMKQLKNDRDPR  180
              NRF+  RQ  YS+K  N++DMVL +NG+PLV +ELKN  T Q VE+A  Q+ +DRDP+
Sbjct  122  EANRFQCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPK  181

Query  181  EQLFKFNERVAVYFAVDPDEVFMTTKLDKGNTYFLPFnkgnn----ggkgnPLTYGDNYR  236
            E +F+FN R  VYFAVD  +V+MTTKL KGNTYFLPF++G+N     G +   +    Y 
Sbjct  182  ELIFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYP  241

Query  237  SHYLWEEILAPDSLLDILYRFIFIKKDDIKDSNGETIGERQMLIFPRFHQLDVVRKLEAD  296
            + YLWE++L++  LLDI+ RF+     ++ +        +++LIFPR+HQLDVV+KL +D
Sbjct  242  TSYLWENVLTSYQLLDIFERFM-----NLEEK-------KKLLIFPRYHQLDVVKKLISD  289

Query  297  VAQKLVGHNYLIQHSAGSGKTNSISWLAHRLAKLHNEDNESIFSSVIVITDRRVLDKQLQ  356
              +   G NYLIQHSAGSGK+NSI+WLA +LA LH++++++I+SSVIV+TDR VLD+QLQ
Sbjct  290  TQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQ  349

Query  357  DAVYQLEHKAGMVEPI--DKDSEQLARAINNETRIIITTLQKFPFILEKVAGLEHKKYAV  414
            +++  +EH  G VE I  +K S++L  AIN++ +IIITTLQKFP I + +     + +A+
Sbjct  350  NTLMSFEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAI  409

Query  415  IIDEAHSSQGGKASTALTNVLSDKTLE-AAYEE--DRIAEENLGDVDEKIVEAIMKSGKQ  471
            ++DEAHSSQ G ++  L + L+DK      Y+E  + + +++L+D +++IV++++  G++
Sbjct  410  LVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDD-QDQIVQTLLSQGQH  468

Query  472  DNVSFFAFTATPKPKTLEKFGTIGIDGKPAAFHQYTMRQAIEEGFILDVLENYTTYKTFW  531
            DN+SFFAFTATPK KT+E FGT   DG   +FH Y+MRQAIEEGFIL+VL+NY TY+T  
Sbjct  469  DNLSFFAFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSY  528

Query  532  KIAKTVEDDPEVSKKQATKKLAQYVSLHPHSIAQKTEIIIEHYRNFVQRKIGGRAKAMVV  591
            KIAK++E+DPE++K +A + +A+Y SLHP  + QK+EI+IE++R+  Q+ + GR+KAM+V
Sbjct  529  KIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIV  588

Query  592  TASRLHAVRYKMAFDKYINEMGYDDLKTVVAFSGTVKDGEIHYTESEMN------QFSEK  645
            TASRLHAVRY   F KYI+E GY D+  +VAFSGTV D+ I+YTE+ MN      ++ E+
Sbjct  589  TASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQEN  648

Query  646  ELPEKFNSDEYKVLLVAEKYQTGFDEPLLHTMYVDKPLSGIKAVQTLSRLNRTCPGKDDT  705
            +L E F+S+++++L+VAEKYQTGFDEPLLHTM+VDK L G+KAVQTLSRLNRT PGK DT
Sbjct  649  QLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDT  708

Query  706  FVLDFVNDPEDIKASFQPYYESTSLTKISDPNILYDMQAELEPYQVFTEEEVQKVNELEV  765
            F+LDFVN +E+I  +FQP+YE+TSL    + N++YD Q+ L  ++++ ++++Q V  L+ 
Sbjct  709  FILDFVNTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNR  768

Query  766  TGGVKKSTKAQAELNALLDKGVERFKKLSGEEQFAFKQVATKFIRTYGFVLQVVTFIDLD  825
             +  K++ +  + L+++L   + R+  L+ + Q+ F+    +F + Y ++ Q+   +D +
Sbjct  769  QAKQKQNDQLLGRLSSVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKE  828

Query  826  LHKQYIYLTYLLRKLP-RGRGDKDVYLADDVALEYYRNQKVFEGSIEL--EKTGGYDL-D  881
            L  + I+  +LL+ +P + R   D+   D V LEYY+ Q  F G I L  E     +L +
Sbjct  829  LLEESIFTGFLLKFIPEKQRNYIDI--EDKVKLEYYKLQEDFKGDIALVNEDVENGQLAH  886

Query  882  PHEHGAGGAAEDEKVRLSSVLEKLNERFGTQFTETDFLSREQVKEDMLNDEDIR--QKAK  939
            P E  A   +E+E   L+ +++K+NERF  +FT+ D +   +++E ++N+ D +  + A+
Sbjct  887  PSEVNATVRPEEEYDSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAKLVNMAQ  946

Query  940  NNTKENFKFA-FEKSFMDFVIDRMSSNQEFFMKILEND  976
            NN+ E F  + F++ F DF+ID+ +  +  + K++ N+
Sbjct  947  NNSEEMFANSLFQQQFQDFLIDQYNQGEAAYSKMFSNN  984

14) I33_0766 in NC_017195


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  674 bits (2549),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 434/1003 (44%), Positives = 681/1003 (68%), Gaps = 50/1003 (4%)

Query  2    AVDTSEKGFETNIEMALIANGYKKRVLEGTESAAFK--QY----AIDVKELFAFLEDTQE  55
             +   E  FE +IE +L+  G       G ES  F+  +Y    A+D   L+ F+ +TQ 
Sbjct  4    VIKNKEINFEQDIEASLVQYG-------GWESVRFQDTHYDANIALDPTVLLEFVKQTQP  56

Query  56   KRMRTLEKSYGPSYKEEVLKRIKDQLHRQGLVECLRKGIKDRGVTLQLAYNKPPTDMNKT  115
            K  +     Y  +  +  LKR+++++  +G+++ LRKGI+DRGV++++ Y +P++ +N  
Sbjct  57   KNWKRYVSIYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTE  116

Query  116  LNEQYGKNRFNVARQVYYSDKHNNSLDMVLFLNGLPIVVMELKNPLTNQTVEDAMKQLKT  175
               +Y  NRF+  RQ  YS+K  N++DMVL +NG+P+V +ELKN  T Q VE+A  Q+  
Sbjct  117  NIKNYEANRFQCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQ  176

Query  176  DRNPREQLFKFNERVAVYFAVDPDEVFMTTKLDKGKTYFLPFnkgnn----ggkgnPLTY  231
            DR+P+E +F+FN R  VYFAVD  +V+MTTKL KG+TYFLPF++G+N     G +   + 
Sbjct  177  DRDPKELIFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSN  236

Query  232  GDNYRTHYLWEEILAPDSLLDILYRFIFIKKDDIKDSNGETIGERQMLIFPRFHQLDVVR  291
               Y T YLWE++L++  LLDI+ RF+     ++ +        +++LIFPR+HQLDVV+
Sbjct  237  PSGYPTSYLWENVLTSYQLLDIFERFM-----NLEEK-------KKLLIFPRYHQLDVVK  284

Query  292  KLEADVAQKLVGHNYLIQHSAGSGKTNSISWLAHRLAKLHNEDNESIFSSIIVITDRRVL  351
            KL +D  +   G NYLIQHSAGSGK+NSI+WLA +LA LH++++++I+SS+IV+TDR VL
Sbjct  285  KLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVL  344

Query  352  DKQLQDAVYQLEHKAGMVEPI--DKDSEQLARAINNETRIIITTLQKFPFILEKVAGLER  409
            D+QLQ+++  +EH  G VE I  +K S++L  AIN++ +IIITTLQKFP I + +     
Sbjct  345  DRQLQNTLMSFEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAG  404

Query  410  KKYAVIIDEAHSSQGGKASTALTNVLSDKTLE-AAYEE--DRIAEENLGDVDEKIVEAIM  466
            + +A+++DEAHSSQ G ++  L + L+DK      Y+E  + + +++L+D +++IV++++
Sbjct  405  RSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDD-QDQIVQTLL  463

Query  467  KSGKQDNVSFFAFTATPKPKTLEKFGTIGIDGKPAAFHQYTMRQAIEEGFILDVLENYTT  526
              G++DN+SFFAFTATPK KT+E FGT   DG   +FH Y+MRQAIEEGFIL+VL+NY T
Sbjct  464  SQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMT  523

Query  527  YKTFWKIAKTVEDDPEVSKKQATKKLAQYVSLHPHSIAQKTEIIIEHYRNFVQRKIGGRA  586
            Y+T  KIAK++E+DPE++K +A + +A+Y SLHP  + QK+EI+IE++R+  Q+ + GR+
Sbjct  524  YNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRG  583

Query  587  KAMVVTASRLHAVRYKMAFDKYINEMGYDDLKTVVAFSGTVKDGEIHYTESEMN------  640
            KAM+VTASRLHAVRY   F KYI+E GY D+  +VAFSGTV D+ I+YTE+ MN      
Sbjct  584  KAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGE  643

Query  641  QFSEKELPEKFNSDEYKVLLVAEKYQTGFDEPLLHTMYVDKPLSGIKAVQTLSRLNRTCP  700
            ++ E++L E F+S+++++L+VAEKYQTGFDEPLLHTM+VDK L G+KAVQTLSRLNRT P
Sbjct  644  RIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMP  703

Query  701  GKDDTFVLDFVNDPEDIKASFQPYYESTGLSKISDPNILYDMQAELEPYQVFTEEEVQKV  760
            GK DTF+LDFVN +E+I  +FQP+YE+T+L    + N++YD Q+ L  ++++ ++++Q V
Sbjct  704  GKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTV  763

Query  761  NELEVTGGVKKSTKAQAELNALLDKGVERFKKLSGEEQFAFKQVATKFIRTYGFVLQVVT  820
              L+  +  K++ +  + L+++L   + R+  L+ + Q+ F+    +F + Y ++ Q+  
Sbjct  764  MKLNRQAKQKQNDQLLGRLSSVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQIDR  823

Query  821  FIDLDLHKQYIYLTYLLRKLP-RGRGDKDVYLADDVALEYYRNQKVFEGSIEL--EKTGG  877
             +D +L  + I+  +LL+ +P + R   D+   D V LEYY+ Q  F G I L  E    
Sbjct  824  TFDKELLEESIFTGFLLKFIPEKQRNYIDI--EDKVKLEYYKLQEDFKGDIALVNEDVEN  881

Query  878  YDL-DPQEHGAGGAAEDEKVRLSSVLEKLNERFGTQFTETDFLSREQVKEDMLNDED--I  934
             +L +P E  A   +E+E   L+ +++K+NERF  +FT+ D +   +++E ++N+ D  +
Sbjct  882  GQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAKL  941

Query  935  CQKAKNNTKENFKFA-FEKSFMDFVIDRMSSNQEFFMKILEND  976
             + A+NN+ E F  + F++ F DF+ID+ +  +  + K++ N+
Sbjct  942  VNMAQNNSEEMFANSLFQQQFQDFLIDQYNQGEAAYSKMFSNN  984

15) A7A1_1718 in NC_019896


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  668 bits (2526),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 421/958 (44%), Positives = 663/958 (70%), Gaps = 35/958 (3%)

Query  14   AIDVEELFAFLEDTQEKRMRTLEKSYGPSYKEEVLKRIKAQLHKQGLVECLRKGIKDRGV  73
            A+D   L+ F+ +TQ K  +     Y  +  +  LKR++ ++ ++G+++ LRKGI+DRGV
Sbjct  41   ALDPTVLLEFVKQTQPKNWKRYVSIYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGV  100

Query  74   TLQLAYNKPPTDMNKTLNEQYAKNRFNVARQVYYSDKHNNSLDMVLFLNGLPLVVMELKN  133
            ++++ Y +P++ +N     +Y  NRF+  RQ  YS+K  N++DMVL +NG+PLV +ELKN
Sbjct  101  SFKVVYFQPASSLNTENIKNYEANRFQCVRQFQYSNKYRNTIDMVLMINGIPLVALELKN  160

Query  134  PLTNQTVEDAMKQLKTYRDPREQLFKFNERVAVYFAVDSDEVFMTTKLDKGKTYFLPFnk  193
              T Q VE+A  Q+   RDP+E +F+FN R  VYFAVD  +V+MTTKL KG+TYFLPF++
Sbjct  161  QYTGQNVEHARLQFEQDRDPKELIFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQ  220

Query  194  gnn----ggkgnPLTYGDNYRTHYLWEEILAPDSLLDILYRFIFIKKDDIKDSNGETIGE  249
            G+N     G +   +    Y T YLWE++L++  LLDI+ RF+     ++ +        
Sbjct  221  GSNGPGRVGGAGNPSNPSGYPTSYLWENVLTSYQLLDIFERFM-----NLEEK-------  268

Query  250  RQMLIFPRFHQLDVVRKLEADVAQKLVGRNYLIQHSAGSGKTNSISWLAHRLAKLHNEDN  309
            +++LIFPR+HQLDVV+KL +D  +   G+NYLIQHSAGSGK+NSI+WLA +LA LH++++
Sbjct  269  KKLLIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNED  328

Query  310  ESIFSSIIVITDRRVLDKQLQDAVYQLEHKAGMVEPI--DKDSEQLARAINNETRIIITT  367
            ++I+SS+IV+TDR VLD+QLQ+++  +EH  G VE I  +K S++L  AIN++ +IIITT
Sbjct  329  QPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETIGDNKTSQDLKTAINDQKKIIITT  388

Query  368  LQKFPFILEKVAGLERKKYAVIIDEAHSSQGGKASTALTNVLSDKTLE-AAYEE--DRIA  424
            LQKFP I + +     + +A+++DEAHSSQ G ++  L + L+DK      Y+E  + + 
Sbjct  389  LQKFPVIYDEIDNTAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVE  448

Query  425  EENLGDVDEKIVEAIMKSGKQDNVSFFAFTATPKPKTLEKFGTIGIDGKPAAFHQYTMRQ  484
            +++L+D +++IV++++  G++DN+SFFAFTATPK KT+E FGT   DG   +FH Y+MRQ
Sbjct  449  DQSLDD-QDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQ  507

Query  485  AIEEGFILDVLENYTTYKTFWKIAKTVEDDPEVSKKQATKKLAQYVSLHPHSIAQKTEII  544
            AIEEGFIL+VL+NY TY+T  KIAK++E+DPE++K +A + +A+Y SLHP  + QK+EI+
Sbjct  508  AIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIM  567

Query  545  IEHYRNFVQRKIGGRAKAMVVTASRLHAVRYKMAFDKYINEMGYDDLKTVVAFSGTVKDG  604
            IE++R+  Q+ + GR+KAM+VTASRLHAVRY   F KYI+E GY D+  +VAFSGTV D+
Sbjct  568  IEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVEDD  627

Query  605  EIHYTESEMN------QFSEKELPEKFNSDEYKVLLVAEKYQTGFDEPLLHTMYVDKPLS  658
             I+YTE+ MN      ++ E++L E F+S+++++L+VAEKYQTGFDEPLLHTM+VDK L 
Sbjct  628  GIEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLR  687

Query  659  GIKAVQTLSRLNRTCPGKDDTFVLDFVNDPEDIKASFQPYYESTGLSKISDPNILYDMQA  718
            G+KAVQTLSRLNRT PGK DTF+LDFVN +E+I  +FQP+YE+T+L    + N++YD Q+
Sbjct  688  GVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININLIYDTQS  747

Query  719  ELEPYQVFTEEEVQKVNELEVTGGVKKSTKAQAELNALLDKGVERFKKLSGEEQFAFKQV  778
             L  ++++ ++++Q V  L+  +  K++ +  + L+++L   + R+  L+ + Q+ F+  
Sbjct  748  KLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLLGRLSSVLRPVISRYSDLPEDVQYDFRVT  807

Query  779  ATKFIRTYGFVLQVVTFIDLDLHKQYIYLTYLLRKLPRGRVDKDVYLADDVALEYYRNQK  838
              +F + Y ++ Q+   +D +L  + I+  +LL+ +P  +  + + + D V LEYY+ Q 
Sbjct  808  LRNFNKWYNYIAQIDRTFDKELLEESIFTGFLLKFIP-EKQRNYIDIEDKVKLEYYKLQE  866

Query  839  VFEGSIEL--EKTGGYDL-DPQEHGAGGAAEDEKVRLSSVLEKLNERFGTQFTETDFLSR  895
             F G I L  E     +L +P E  A   +E+E   L+ +++K+NERF  +FT+ D +  
Sbjct  867  DFKGDIALVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPNDFTQGDRVLV  926

Query  896  EQVKEDMLNDED--ICQKAKNNTKENFKFA-FEKSFMDFVIDRMSSNQEFFMKILEND  950
             +++E ++N+ D  + + A+NN+ E F  + F++ F DF+ID+ +  +  + K++ N+
Sbjct  927  KNMRETLINNTDAKLVNMAQNNSEEMFANSLFQQQFQDFLIDQYNQGEAAYSKMFSNN  984

16) Nther_0797 in NC_010718


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  664 bits (2512),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 444/1016 (44%), Positives = 701/1016 (69%), Gaps = 45/1016 (4%)

Query  3     VDHSEISLEKTIESYLINHGGY--IKGDPSEFAREKALFPKTFIAFIKDTQPDKWEKLER  60
             + + EI++E+ IE+ L++ GG   ++ + +++  + AL P  ++ F+K+TQP +W +   
Sbjct  5     IKNKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYVS  64

Query  61    MHGDQVEEKVIYRLTRELSQRGMLDVLRKGITDFGVKLTTAYFPPASGLNPEIQELYDKN  120
             +   + E+K + RL  E++++G+L+VLRKGI D GV +   YF PAS+LN E    Y+ N
Sbjct  65    IYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEAN  124

Query  121   RLTATRQVRYSTKNENSLDLVLSINGLPVATAELKNPSTGQTFQDAKKQYKEDRDPKEPI  180
             R+   RQ +YS K  N++D+VL ING+P+ + ELKN  TGQ  ++A+ Q+ +DRDPKE I
Sbjct  125   RFQCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKELI  184

Query  181   FQFKKRTLVHFALDTDEVYMTTKLAKGNTVFLPFNKGKDG-----GKGNPENPNGYRTAY  235
             FQF+ R LV FA+D  +V MTTKLAKGNT FLPF++G +G     G GNP NP+GY T+Y
Sbjct  185   FQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSY  244

Query  236   LWEEIWEKDTWMKIVSRFMNLEVKKEEKDGKQITKENIIFPRYHQLEAVFNITNDAQKRG  295
             LWE++      + I  RFMNLE KK            +IFPRYHQL+ V ++ +D+Q +G
Sbjct  245   LWENVLTSYQLLDIFERFMNLEEKKK----------LLIFPRYHQLDVVKKLISDTQHHG  294

Query  296   PGKNYLVQHSAGSGKSLTIGWLAHRLSNLHDDNNAPVFNSVIVITDRVVLDKQLQETIYQ  355
             PGKNYL+QHSAGSGKS +I+WLA +L++LH +++ P+++SVIV+TDR VLD+QLQ+T+  
Sbjct  295   PGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTLMS  354

Query  356   IDHQQGVVERI--DRHSSQLKDALEKGKKIIITTLQKFPVILDEIKGLPERNYAVIVDEA  413
             ++H  G VE I  ++ S +LK A++  KKIIITTLQKFPVI DEI   + R++A++VDEA
Sbjct  355   FEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEA  414

Query  414   HSSQTGKSARAVREVLSA--ETLEEAEQ-RQQdiedefdpeeeiiKSMKKQGKQENLSFF  470
             HSSQTG SA+ +++ L+    +L E ++  +   ++ +D +++I++++  QG+++NLSFF
Sbjct  415   HSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFF  474

Query  471   AFTATPKAKTLETFGHKDKEGKPVPFHLYPMRQAIEEGFILDVLKNYTTYKTYFKLAKRI  530
             AFTATPK KT+E FG K+ +G   PFH+Y+MRQAIEEGFIL+VL+NY TY+T +K+AK I
Sbjct  475   AFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSI  534

Query  531   EDDPNLDKKKAAKEVARFVSLHPHNLAQKTEVMIEHFRNVTMHKINGKAKAMLVTSSRFH  590
             E+DP+L K  A + +A++ SLHP  L QK+E+MIE+FR+VT   ++G++KAM+VT+SR+H
Sbjct  535   EEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLH  594

Query  591   ALRYKFEFDRYLKENGYDDIKTLVAFSGTVQDPELDKEYTESEIN------QIRESELPQ  644
             A+RY  EF +Y+KE+GY D+  LVAFSGTV+D  +  EYTE+ +N      +I+E++L +
Sbjct  595   AVRYMQEFKKYIKEKGYTDMDVLVAFSGTVEDDGI--EYTEPKMNLTHSGERIQENQLKE  652

Query  645   KFDTDGYRLLLVADKYQTGFDQPLLHTMYVDKKLTDVKAVQTLSRLNRPYPGKDDTFVLD  704
              F+++++ LL+VA+KYQTGFD+PLLHTM+VDK+L +VKAVQTLSRLNR  PGK DTF+LD
Sbjct  653   AFHSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILD  712

Query  705   FVNEADDIKKAFQPFYEQTTVEETTDPNllydlkyklddFQVYWQTEIDNFCKVFFKPPE  764
             FVN A++I  AFQPFYE T++ E  + NL+YD + KL  F++Y + +I+   K+     +
Sbjct  713   FVNTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKL-----N  767

Query  765   KQNKDKDA----AMLNSYVDPAVDRFKNKPKEEQEEFHKTLTSFIRTYAFLLQIIPFQDQ  820
             +Q K+K+     + L+S + P + R+ + P + Q +F+ TL +F + Y ++ QI    D+
Sbjct  768   RQAKQKQNDQLLGRLSSVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDK  827

Query  821   ELHKLDAYGRFLLTKLPSQRNHEDTVELNNEIDLEYYRLEKTGDHSVVLEEQGEYGVRGT  880
             EL     +  FLL  +P   ++ + +++++ + LEYY+L+      + L +++    + +
Sbjct  828   ELLEESIFTGFLLKFIPE--KQRNYIDIEDKVKLEYYKLQEDFKGDIALVNEDVENGQLA  885

Query  881   THAGTGQNKDKEDEKAPLSEIIEIINERFGTDFTENDWLFFEQIKNDMLEDEE--LEKHA  938
               +        E+E  +L+EII+ INERF  DFT+ D+++  ++++ ++++ +  L + A
Sbjct  886   HPSEVNATVRPEEEYDSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAKLVNMA  945

Query  939   RNNRKDNFYYA-FKDHFDKKTIKRRTQNMELFA-MLMDNEEFKEKVMDFYMNEVFK  992
             +NN  + F  + F+++F+   I +  Q    ++ M+ +N +F + V ++  ++ ++
Sbjct  946   QNNSEEMFANSLFQQQFQDFLIDQYNQGEAAYSKMFSNNRDFYDTVYQLLAKDYYR  1001

17) BpOF4_03725 in NC_013791


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  660 bits (2495),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 443/1007 (44%), Positives = 680/1007 (68%), Gaps = 52/1007 (5%)

Query  2    AVDTSEKGFETNIEAALIANGYKKRVLEGEASALFK--QY----AIDVEELFAFLEDTQS  55
             +   E  FE +IEA+L+  G       G  S  F+  +Y    A+D   L+ F+ +TQ+
Sbjct  4    VIKNKEINFEQDIEASLVQYG-------GWESVRFQDTHYDANIALDPTVLLEFVKQTQP  56

Query  56   KSLRALEKSYGPNYKEQVLKRIVEQLKTSKQGLVECLRKGIKDRGVTLKFAYHKPATTMN  115
            K+ +     Y  N  ++ LKR+ E++  +++G+++ LRKGI+DRGV++K  Y +PA+++N
Sbjct  57   KNWKRYVSIYRTNAEQKFLKRLNEEI--TNHGILHVLRKGIRDRGVSFKVVYFQPASSLN  114

Query  116  QLTNEWYSKNRFNVARQVYYSDKHNNSVDMVLFLNGLPLIVMELKNPLTNQTVEQAMKQL  175
                  Y  NRF+  RQ  YS+K  N++DMVL +NG+PL+ +ELKN  T Q VE+A  Q+
Sbjct  115  TENIKNYEANRFQCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQF  174

Query  176  KFDRDPNERLFKFNERVVVYFAVDPDEVFMTTELKKGKTYFLPFNKGNQG-----GKGNP  230
              DRDP+E +F+FN R +VYFAVD  +V+MTT L KG+TYFLPF++G++G     G GNP
Sbjct  175  EQDRDPKELIFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNP  234

Query  231  LVYENYRTHYLWEEILAPDSLLDILFRFVFIKKDDILDSNGDTIEERKMLIFPRFHQLDA  290
                 Y T YLWE++L++  LLDI+ RF+            +  E +K+LIFPR+HQLD 
Sbjct  235  SNPSGYPTSYLWENVLTSYQLLDIFERFM------------NLEEKKKLLIFPRYHQLDV  282

Query  291  VRKLEEDVKVRLVGHNYLIQHSAGSGKTNSISWLAHRLAKLHDENNESIFSSVIVITDRR  350
            V+KL  D + +  G NYLIQHSAGSGK+NSI+WLA +LA LH +++++I+SSVIV+TDR 
Sbjct  283  VKKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRT  342

Query  351  VLDKQLQDAVYQLEHKAGMVERI--NKDSAQLANAINNETRIIITTLQKFPFIMEKVAGI  408
            VLD+QLQ+++  +EH  G VE I  NK S +L  AIN++ +IIITTLQKFP I + +   
Sbjct  343  VLDRQLQNTLMSFEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNT  402

Query  409  DRKKYAVIIDEAHSSQGGKASTALTNILSDKTLE-DAYNE--DRIAEENLESLDEQIIET  465
              + +A+++DEAHSSQ G ++  L + L+DK      Y+E  + + +++L+  ++QI++T
Sbjct  403  AGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDD-QDQIVQT  461

Query  466  IMKSGKQDNVSFFAFTATPKPKTLEKFGTLGMDGKPRAFHEYTMRQAIEEGFILDVLQNY  525
            ++  G++DN+SFFAFTATPK KT+E FGT   DG  ++FH Y+MRQAIEEGFIL+VLQNY
Sbjct  462  LLSQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNY  521

Query  526  TTYKTFWKIAKTIDDDPEVSRKQATKKLAQYVSLHPHSIAQKTEIIIEHYRNFVKRKIGG  585
             TY+T  KIAK+I++DPE+++ +A + +A+Y SLHP  + QK+EI+IE++R+  ++ + G
Sbjct  522  MTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQG  581

Query  586  RAKAMVVTASRLHAVRYKIAFDKYIDEKGYDDLKTVVAFSGTVKDGEISYTEPDMN----  641
            R+KAM+VTASRLHAVRY   F KYI EKGY D+  +VAFSGTV D+ I YTEP MN    
Sbjct  582  RGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHS  641

Query  642  --KFSEKELPEKFNSDEYKVLLVAEKYQTGFDEPLLHTMYVDKPLSGIKAVQTLSRLNRT  699
              ++ E++L E F+S+++++L+VAEKYQTGFDEPLLHTM+VDK L G+KAVQTLSRLNRT
Sbjct  642  GERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRT  701

Query  700  CPGKEDTFVLDFVNEQEDIKASFQPYYESTSLSEVTDPNILYDLQGELEPYQIFTEEEVQ  759
             PGK DTF+LDFVN  E+I  +FQP+YE+TSL E  + N++YD Q+ L  ++I+ ++++Q
Sbjct  702  MPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQ  761

Query  760  KVNELELNGGLNKSTSAQTALNAEIDKGVERYKKLSAGEQEafkaaatkftRTYGFVLQI  819
             V  L+ ++  +++      L++ +   + RY  L+ + Q  F+ +  +F + Y ++ QI
Sbjct  762  TVMKLNRQAKQKQNDQLLGRLSSVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQI  821

Query  820  ATFIDVDLHKLYIYLNYLLRKLPRDKNDKDVYLADDVALEYYRNQKVFEGSIEL--EKTG  877
               +D +L    I+  +LL+ +P +K+ + + + D V LEYY+ Q  F G I L  E   
Sbjct  822  DRTFDKELLEESIFTGFLLKFIP-EKQRNYIDIEDKVKLEYYKLQEDFKGDIALVNEDVE  880

Query  878  GVEL-DPQRHGAGGAVEDEKTKLSSILEKLNDRFGTEFTEEDLLFDEQVVSTMTKSEDVQ  936
              +L +P    A    E+E   L+ I++K+N+RF  +FT+ D ++  ++  T+ ++ D +
Sbjct  881  NGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAK  940

Query  937  V--RAKNNSYDNFRLAM-KERIIDFVIDR-MEANEKYTHKILGDQEF  979
            +   A+NNS + F  ++ ++++ DF+ID+  +++  Y+  +  +++F
Sbjct  941  LVNMAQNNSEEMFANSLFQQQFQDFLIDQYNQGEAAYSKMFSNNRDF  987

18) BTG_16380 in NC_018500


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  657 bits (2484),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 435/998 (44%), Positives = 681/998 (69%), Gaps = 41/998 (4%)

Query  2    AVDATEKGFETNIEDSLIANGYKKRTLEGETSQLFKQYGLDVEELFAFLEDTQAKQLRVL  61
             +   E  FE +IE SL+  G    ++  + ++   + +LD   L+ F+ +TQ+K+ +  
Sbjct  4    VIKNKEINFEQDIEASLVQYG-GWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRY  62

Query  62   EKSYGADYKKKMLNRICDQLKKQGIMECLRHGIKDRGVTLKLIYNKPPTTMNQLMNDLYR  121
               Y ++  +K L+R+ +++ ++GI++ LR GI+DRGV++K++Y +P++++N      Y 
Sbjct  63   VSIYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYE  122

Query  122  KNRFTVSRQVFYSDKHKNSLDMLLFINGLPLIVMELKNPLTGQTVEDAMNQLKTDRDPRE  181
             NRF   RQ  YS+K +N++DM+L ING+PL+ +ELKN  TGQ VE+A  Q+  DRDP+E
Sbjct  123  ANRFQCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKE  182

Query  182  QLFKFNERVVVYFAVDPDEVFMVTELKREKTYFLPFnkgnngg-----kgnPTVYNNYRT  236
             +F+FN R +VYFAVD  +V+M T L + +TYFLPF++G+NG       GNP+  + Y T
Sbjct  183  LIFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPT  242

Query  237  HYLWEEILAPDSLLDILFRFVFVKKDDILDSNGELIDERKMLIFPRFHQLDVVRELERDV  296
             YLWE++L++  LLDI+ RF+            +L + +K+LIFPR+HQLDVV+ L  D 
Sbjct  243  SYLWENVLTSYQLLDIFERFM------------NLEEKKKLLIFPRYHQLDVVKKLISDT  290

Query  297  QEKSVGQNYLIQHSAGSGKTNSISWLSHRLAKLHDEENNAVFSSVIVITDRRVLDKQLQD  356
            Q+ + G+NYLIQHSAGSGK+NSI+WL+ +LA LH +E+++++SSVIV+TDR VLD+QLQ+
Sbjct  291  QHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQN  350

Query  357  AVYQLEHKAGMVERI--NKDSNQLAQAITGETRIIITTLQKFPFIMEKVSDFDRKKYAVI  414
            ++  +EH  G VE I  NK S++L  AI ++ +IIITTLQKFP I + + +   + +A++
Sbjct  351  TLMSFEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAIL  410

Query  415  IDEAHSSQGGKASTALTNILSDKTLE-DAYEE--DRVAEENLDNIDEQIIETIMKSGKQD  471
            +DEAHSSQ G ++  L + L+DK      Y+E  + V +++LD+ ++QI++T++  G++D
Sbjct  411  VDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDD-QDQIVQTLLSQGQHD  469

Query  472  NISFFAFTATPKPKTIEKFGTMGTDGKPHAFHEYTMRQAIEEGFILDVLSNYTTYKTFYK  531
            N+SFFAFTATPK KTIE FGT  +DG  H+FH Y+MRQAIEEGFIL+VL NY TY+T YK
Sbjct  470  NLSFFAFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYK  529

Query  532  IAKRVDEDPLVSQKQATKKLAQYVSLHPHNVAQKTEIIIEHYRNFTRQKIGGRAKAMVVT  591
            IAK ++EDP +++ +A + +A+Y SLHP  + QK+EI+IE++R+ T++ + GR+KAM+VT
Sbjct  530  IAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVT  589

Query  592  ASRLHAVRYKIAFDQYIDKMGYEDLKTVVAFSGIVKDDEIPYSEQDMN------GFSEKE  645
            ASRLHAVRY   F +YI   GY D+  +VAFSG V DD I Y+E  MN       + E++
Sbjct  590  ASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQ  649

Query  646  LPEKFNSDEYKVLLVAEKYQTGFDEPLLHTMYVDKPLSGIKAVQTLSRLNRTCPGKEDTF  705
            L E F+S+++++L+VAEKYQTGFDEPLLHTM+VDK L G+KAVQTLSRLNRT PGK DTF
Sbjct  650  LKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTF  709

Query  706  VLDFVNDIEDIKDSFQPYYESTGLEEVTDPNILYDLQAELEPYQIFTEKEVQVVNELEIK  765
            +LDFVN  E+I ++FQP+YE+T+L E  + N++YD Q+ L  ++I+ + ++Q V  L+ +
Sbjct  710  ILDFVNTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQ  769

Query  766  GGFKKQTKAQTELNSWIDRGVDRFKNLeeeekdafkaaatkFVRTYAFILQIATFIDLDL  825
            +  K++ +    L+S +   + R+ +L E+ +  F+ +  +F + Y +I QI   +D +L
Sbjct  770  AKQKQNDQLLGRLSSVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKEL  829

Query  826  HKLYIYLNYLLRKLPRSSKDKDVY--MADDVALEYYRNQKVFEGGIEL--EQTGGVDLKP  881
                I+  +LL+ +P   ++   Y  + D V LEYY+ Q  F G+I L  E+    +L  
Sbjct  830  LEESIFTGFLLKFIPEKQRN---YIDIEDKVKLEYYKLQEDFKGDIALVNEDVENGQLAH  886

Query  882  TSHGAGGV-VEDEKVRLSSILDKLNDRFGTEFTETDFLSRDQVKEDMLNSEDIQ--QKAK  938
             S+  + V  E+E   L+ I++K+N+RF  +FT+ D +   +++E ++N+ D +  + A+
Sbjct  887  PSEVNATVRPEEEYDSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAKLVNMAQ  946

Query  939  NNTKDNFKFA-FEKSFINFVIDRMSSNEKFFMKILENE  975
            NN+ + F  + F++ F +F+ID+ +  E  + K++ N+
Sbjct  947  NNSEEMFANSLFQQQFQDFLIDQYNQGEAAYSKMFSNN  984

19) Sgly_0848 in NC_015172


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  652 bits (2465),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 436/1011 (44%), Positives = 685/1011 (68%), Gaps = 36/1011 (3%)

Query  4     TTENTFESALVQSLVEQGGYTEG--NAPDYSPELGMFKYEVIKFLQESQPKRWDKIYSIH  61
               E  FE  +  SLV+ GG      +  +Y +++++    ++ F++++QPK W +  SI 
Sbjct  7     NKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYVSIY  66

Query  62    GEDANNRVIQRLYKELDLRGSLDVLRNGFVDYGVRFQMAFFQPASGLNPDAIDLYNKNSL  121
               +A+++ ++RL  E+  +G L+VLR+G+ D GV F++ +FQPAS+LN + I  Y+ N +
Sbjct  67    RTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEANRF  126

Query  122   KVYRQIFYSTKNKNSLDVLLSLNGIPVATFELKNQFTGQDVGNALKQYASTRDNREILFA  181
             +  RQ+ YS K +N++D++L +NGIP+ ++ELKNQ+TGQ+V +A  Q+   RD +E++F 
Sbjct  127   QCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKELIFQ  186

Query  182   FRKRSLVHFAVDQDEVFMTTKLDGSKTYWLPFNKGANS-----GKGNPLNPNGYRTAYLW  236
             F  R LV FAVD+ +V+MTTKL  ++TY LPF++G+N+     G GNP NP+GY T+YLW
Sbjct  187   FNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLW  246

Query  237   ENILQKDSWMEIIQRFVHLQTEEIEVEGKVYKKEKLIFPRYHQLDAVRRISEKVLEVGTG  296
             EN+L     ++I++RF++L+           KK  LIFPRYHQLD V+++     + G G
Sbjct  247   ENVLTSYQLLDIFERFMNLEE----------KKKLLIFPRYHQLDVVKKLISDTQHHGPG  296

Query  297   KNYLIQHSAGSGKSNSIAWLVYRLSSLHNATDERIFDSVIVVTDRKVLDQQLQNTIYQFE  356
             KNYLIQHSAGSGKSNSIAWL Y+L+SLH+  D+ I+ SVIVVTDR VLD+QLQNT+  FE
Sbjct  297   KNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFE  356

Query  357   HKTGVVQKI--DKDSSQLASALGYGTNIIITTLQKFPFVVDKVGELPDRKYAVIIDEAHS  414
             H  G V+ I  +K S +L +A+    +IIITTLQKFP + D +++ ++R +A+++DEAHS
Sbjct  357   HTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHS  416

Query  415   SQGGEASKKLKEVLAEKSLEKAETEDTDDYNGDDFV--REQIERTAASRGQQPNISFFAF  472
             SQ G +++KLK+ LA+K     E ++ ++   D+ +  ++QI +T  S+GQ+ N+SFFAF
Sbjct  417   SQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAF  476

Query  473   TATPKYKTLQVFGDKDSEGKPKPFHLYSMRQAIEEGFILDVLHYYVTYELYFKLTKAIKE  532
             TATPK KT+++FG K+++G   PFH+YSMRQAIEEGFIL+VL+ Y+TY+  +K++K+I E
Sbjct  477   TATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEE  536

Query  533   DPNLNKKRAAKAIGKFVSLHPHNLAQKTEIIIEHFREIVSKKIGGKAKAMLVCGSRLHAK  592
             DP+L K  A +AI+K+ SLHP  L QK+EI+IE+FR +  K + G++KAM+V +SRLHA 
Sbjct  537   DPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAV  596

Query  593   RYFEEFNRYIKTKGYANEIKILVAFSGKVTDD--NYPDGVSEPQMTG--YGEKELPAIFD  648
             RY +EF++YIK KGY+ ++ +LVAFSG V DD  +Y +   +   +G    E++L   F+
Sbjct  597   RYMQEFKKYIKEKGYT-DMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQLKEAFH  655

Query  649   KDEYRILIVADKYQTGFDQPLLHTMYVDKKLSGVKAVQTLSRLNRIHPGKEDTFVLDFAN  708
              +++ +LIVA+KYQTGFD+PLLHTM+VDK+L GVKAVQTLSRLNR  PGK DTF+LDF N
Sbjct  656   SEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVN  715

Query  709   DRQTILDSFQPYYEITSVIEETDVNHLYDLKARLDEFKIYWKEEIEAFANIYFDPKTKLN  768
               + I ++FQP+YE TS+ EE ++N +YD +++L  F IY  ++I++  ++  ++K K N
Sbjct  716   TAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQN  775

Query  769   NSKQQKLLYAFTDPAVDRYKDIPEHERQDEFKKGLRSWTNLYAFLSQIMPFFDAESEKFY  828
             +    +L   +  P + RY D+PE + Q +F+  LR+  + Y +++QI   FD E     
Sbjct  776   DQLLGRLSSVLR-PVISRYSDLPE-DVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEES  833

Query  829   AYAKLLQTRLPRRGLSESLQLDDEVALEYYRLQKIKEGSIEL--QKGEEGELSGTSEAGL  886
              ++ +L   +P +   + ++++D V LEYY+LQ    G I L  +  E+G+L+  SE   
Sbjct  834   IFTGFLLKFIPEKQ-RNYIDIEDKVKLEYYKLQEDFKGDIALVNEDVENGQLAHPSEVNA  892

Query  887   K-RAKEEKALLSEIINMLNEQFGTEFDEADNLFFDQIEAELMEDET---LQTQAKVNkid  942
               R+ EE   L+EII+ +NE+F  +F ++D ++  ++   L+++     ++   + +   
Sbjct  893   TVRPEEEYDSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAKLVNMAQNNSEEM  952

Query  943   tfkfafddkfidkLIGRMDQNQEIFEKIL-EDKAFGDLVKQLMMKKIYRRM  992
               +  F+++F D LI++ +Q +  + K++ +++ F D V QL+ K  YR++
Sbjct  953   FANSLFQQQFQDFLIDQYNQGEAAYSKMFSNNRDFYDTVYQLLAKDYYRWL  1003

20) TepiRe1_2391 in NC_019954


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  650 bits (2456),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 445/989 (45%), Positives = 695/989 (71%), Gaps = 36/989 (3%)

Query  10   EKGFEEYIEEHLLN-SGY--IKGNPADYNREFALDAKILFEFLEDTQPKKMDKLKEIYKD  66
            E  FE+ IE  L++ +G   ++ + ++Y+ ++ALD+ +L+EF+ +TQPK+  +   IY+ 
Sbjct  9    EINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYVSIYRT  68

Query  67   QHRFKILSRLNRELNNRGMIDVLRHGIKDYGVYLDLAYFQPASKLNEEIVRLYEKNRISV  126
            +   K+L RLN E+ N+G+++VLR GI+D GV + + YFQPAS LN E ++ YE NR+  
Sbjct  69   NAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEANRFQC  128

Query  127  TRQVRYSTKSENSIDMLICVNGLPAVVLELKNPFTGQTYEDAIMQYKQDRNPNELLFQFK  186
             RQ +YS K  N+IDM++ +NG+P V LELKN +TGQ  E+A +Q+ QDR+P+EL+FQF+
Sbjct  129  VRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKELIFQFN  188

Query  187  KRAIVFFAADTSEVYMTTRLAGDKTFFLPFnkgkdgg-----rgnpdnpngFKTAYLWEK  241
             R +V+FA D  +V MTT+LA ++T+FLPF++G +G       GNP NP+G+ T+YLWE+
Sbjct  189  SRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLWEN  248

Query  242  ILQKDSLMDILKRFVFIETEEKKDIDGKTYISEKVIFPRYHQLDVVRKLEADAREKGVGT  301
            +L    L+DI+ RF  ++ EEKK +         +IFPRYHQLDVV+KL +D+++ G G 
Sbjct  249  VLTSYQLLDIFERF--MNLEEKKKL---------LIFPRYHQLDVVKKLISDTQHHGPGK  297

Query  302  NYLVQHSAGSGKTNSISWLAHRLANLHDDDDNSVFDSVIVITDRRVLDKQLQESIYQLEH  361
            NYL+QHSAGSGK+NSI+WLA +LA+LH ++D++++ SVIV+TDR VLD+QLQ+++  +EH
Sbjct  298  NYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFEH  357

Query  362  KHGVVQKI--DKDSNQLVEALKSGTRIIISTLQKFPFIIEKVGELENRKYAVIIDEAHSS  419
              G V+ I  +K S++L  A++   +III+TLQKFP I + +++   R +A+++DEAHSS
Sbjct  358  TVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSS  417

Query  420  SAGENMaslrevlsassleea--arldeeleGKGYDPEEEILNTIKKRGRQPNISFFAFT  477
             +G +   L++ L+           ++E +E+++ D +++I++T+  +G++ N+SFFAFT
Sbjct  418  QTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFT  477

Query  478  ATPKAKTLEMFGTIGEDGLPHPFHLYSMRQAIEEGFILDVLQNYVTYETYFKLAKKIEDD  537
            ATPK KT+EMFGT   DG  HPFH+YSMRQAIEEGFIL+VLQNY+TY+T +K+AK IE+D
Sbjct  478  ATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEED  537

Query  538  PAFDKAKATKALTRYVSLHPHNIAQKTEIMVEHFRNVTSHKIGGRAKAMVVTSSRLHAVR  597
            P + K+ A +A+++Y SLHP  + QK+EIM+E+FR+VT   + GR+KAM+VT+SRLHAVR
Sbjct  538  PELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVR  597

Query  598  YKHAFDEYIKKKGYKGLKTLVAFSGIVRDEGIEYTESDMN------GFKESELPERFATD  651
            Y + F  YIK KGY ++  LVAFSG V D+GIEYTE+ MN       ++E++L E F ++
Sbjct  598  YMQEFKKYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSE  657

Query  652  EYQVLLVAEKYQTGFDQPLLHTMYVDKKLSGVKAVQTLSRLNRTCPGKEDTFVLDFVNKA  711
            ++++L+VAEKYQTGFD+PLLHTM+VDK+L GVKAVQTLSRLNRT PGK DTF+LDFVN A
Sbjct  658  DFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTA  717

Query  712  EDIQEAFKPYYEATIVEEVTEPNLLYDIQSMLDAYGVYIKEELDKFAYIYFKPKEKKTSK  771
            E+I EAF+P+YEAT + E  + NL+YD QS L  + +Y  ++++    +  ++K+K+  +
Sbjct  718  EEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQ  777

Query  772  DRAALNSLIDMAVERFKKLDEEHKEDFSSQATKCVRLYSFILQITPFEDVElhklyvylt  831
              + L+S++   + R+  L E+ + DF     +  + Y++I QI    D EL    ++  
Sbjct  778  LLGRLSSVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFTG  837

Query  832  yllkklrkekGSTIHLADEIALEYYTTKKTFEGSISL-GGNYENVPVSPPRYGGGKVREN  890
            +LLK +   + + I++ D + LEYY  +  F G I+L   + EN  ++ P    + VR +
Sbjct  838  FLLKFIPEKQRNYIDIEDKVKLEYYKLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPE  897

Query  891  QKEY--LSSIIERLNERFGTDFTKADQLSVEQIKEDF--AADEDLVLKAKTNTIDDFRLA  946
            + EY  L+ II+++NERF  DFT++D++ V +++E +   +D  LV  A+ N+ + F  +
Sbjct  898  E-EYDSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAKLVNMAQNNSEEMFANS  956

Query  947  -FEKVFINKVVDRMDQNRTFFTRVLDDEQ  974
             F++ F + ++D+ +Q  + +++++ +++
Sbjct  957  LFQQQFQDFLIDQYNQGEAAYSKMFSNNR  985

21) TepRe1_2223 in NC_015519


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  650 bits (2456),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 445/989 (45%), Positives = 695/989 (71%), Gaps = 36/989 (3%)

Query  10   EKGFEEYIEEHLLN-SGY--IKGNPADYNREFALDAKILFEFLEDTQPKKMDKLKEIYKD  66
            E  FE+ IE  L++ +G   ++ + ++Y+ ++ALD+ +L+EF+ +TQPK+  +   IY+ 
Sbjct  9    EINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYVSIYRT  68

Query  67   QHRFKILSRLNRELNNRGMIDVLRHGIKDYGVYLDLAYFQPASKLNEEIVRLYEKNRISV  126
            +   K+L RLN E+ N+G+++VLR GI+D GV + + YFQPAS LN E ++ YE NR+  
Sbjct  69   NAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEANRFQC  128

Query  127  TRQVRYSTKSENSIDMLICVNGLPAVVLELKNPFTGQTYEDAIMQYKQDRNPNELLFQFK  186
             RQ +YS K  N+IDM++ +NG+P V LELKN +TGQ  E+A +Q+ QDR+P+EL+FQF+
Sbjct  129  VRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKELIFQFN  188

Query  187  KRAIVFFAADTSEVYMTTRLAGDKTFFLPFnkgkdgg-----rgnpdnpngFKTAYLWEK  241
             R +V+FA D  +V MTT+LA ++T+FLPF++G +G       GNP NP+G+ T+YLWE+
Sbjct  189  SRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLWEN  248

Query  242  ILQKDSLMDILKRFVFIETEEKKDIDGKTYISEKVIFPRYHQLDVVRKLEADAREKGVGT  301
            +L    L+DI+ RF  ++ EEKK +         +IFPRYHQLDVV+KL +D+++ G G 
Sbjct  249  VLTSYQLLDIFERF--MNLEEKKKL---------LIFPRYHQLDVVKKLISDTQHHGPGK  297

Query  302  NYLVQHSAGSGKTNSISWLAHRLANLHDDDDNSVFDSVIVITDRRVLDKQLQESIYQLEH  361
            NYL+QHSAGSGK+NSI+WLA +LA+LH ++D++++ SVIV+TDR VLD+QLQ+++  +EH
Sbjct  298  NYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFEH  357

Query  362  KHGVVQKI--DKDSNQLVEALKSGTRIIISTLQKFPFIIEKVGELENRKYAVIIDEAHSS  419
              G V+ I  +K S++L  A++   +III+TLQKFP I + +++   R +A+++DEAHSS
Sbjct  358  TVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSS  417

Query  420  SAGENMaslrevlsassleea--arldeeleGKGYDPEEEILNTIKKRGRQPNISFFAFT  477
             +G +   L++ L+           ++E +E+++ D +++I++T+  +G++ N+SFFAFT
Sbjct  418  QTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFT  477

Query  478  ATPKAKTLEMFGTIGEDGLPHPFHLYSMRQAIEEGFILDVLQNYVTYETYFKLAKKIEDD  537
            ATPK KT+EMFGT   DG  HPFH+YSMRQAIEEGFIL+VLQNY+TY+T +K+AK IE+D
Sbjct  478  ATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEED  537

Query  538  PAFDKAKATKALTRYVSLHPHNIAQKTEIMVEHFRNVTSHKIGGRAKAMVVTSSRLHAVR  597
            P + K+ A +A+++Y SLHP  + QK+EIM+E+FR+VT   + GR+KAM+VT+SRLHAVR
Sbjct  538  PELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVR  597

Query  598  YKHAFDEYIKKKGYKGLKTLVAFSGIVRDEGIEYTESDMN------GFKESELPERFATD  651
            Y + F  YIK KGY ++  LVAFSG V D+GIEYTE+ MN       ++E++L E F ++
Sbjct  598  YMQEFKKYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSE  657

Query  652  EYQVLLVAEKYQTGFDQPLLHTMYVDKKLSGVKAVQTLSRLNRTCPGKEDTFVLDFVNKA  711
            ++++L+VAEKYQTGFD+PLLHTM+VDK+L GVKAVQTLSRLNRT PGK DTF+LDFVN A
Sbjct  658  DFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTA  717

Query  712  EDIQEAFKPYYEATIVEEVTEPNLLYDIQSMLDAYGVYIKEELDKFAYIYFKPKEKKTSK  771
            E+I EAF+P+YEAT + E  + NL+YD QS L  + +Y  ++++    +  ++K+K+  +
Sbjct  718  EEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQ  777

Query  772  DRAALNSLIDMAVERFKKLDEEHKEDFSSQATKCVRLYSFILQITPFEDVElhklyvylt  831
              + L+S++   + R+  L E+ + DF     +  + Y++I QI    D EL    ++  
Sbjct  778  LLGRLSSVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFTG  837

Query  832  yllkklrkekGSTIHLADEIALEYYTTKKTFEGSISL-GGNYENVPVSPPRYGGGKVREN  890
            +LLK +   + + I++ D + LEYY  +  F G I+L   + EN  ++ P    + VR +
Sbjct  838  FLLKFIPEKQRNYIDIEDKVKLEYYKLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPE  897

Query  891  QKEY--LSSIIERLNERFGTDFTKADQLSVEQIKEDF--AADEDLVLKAKTNTIDDFRLA  946
            + EY  L+ II+++NERF  DFT++D++ V +++E +   +D  LV  A+ N+ + F  +
Sbjct  898  E-EYDSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAKLVNMAQNNSEEMFANS  956

Query  947  -FEKVFINKVVDRMDQNRTFFTRVLDDEQ  974
             F++ F + ++D+ +Q  + +++++ +++
Sbjct  957  LFQQQFQDFLIDQYNQGEAAYSKMFSNNR  985

22) Turpa_0053 in NC_018020


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  648 bits (2451),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 423/1007 (43%), Positives = 678/1007 (68%), Gaps = 60/1007 (5%)

Query  26    RLEDADFSQDIALFKAEIIAFVKDTQAET---YATIERTNDDRTDKLIIDDLVKALNSLG  82
             R++D+++  +IAL  + ++ FVK+TQ+     Y +I RTN ++    ++  L   + + G
Sbjct  30    RFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYVSIYRTNAEQK---FLKRLNEEITNHG  86

Query  83    ALEVMRHGFKCFGRTIRIAYFQPAHGMTPELEELFHKNRFRVIRQLHYSSQNRNSLDMVI  142
              L+V+R G++  G ++++ YFQPA ++  E    ++ NRF+ +RQ++YS++ RN++DMV+
Sbjct  87    ILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEANRFQCVRQFQYSNKYRNTIDMVL  146

Query  143   VLNGIPIITVELKNHFTGQNVSHARRQYQNDRDPREIIFTFKKRTLVHFAVDPDLVYMTT  202
             ++NGIP++++ELKN++TGQNV HAR Q+++DRDP+E+IF F+ R LV FAVD   V MTT
Sbjct  147   MINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKELIFQFNSRFLVYFAVDHFNVLMTT  206

Query  203   KLNGASTYFLPFNKGQN-----EGAGNPVAPAGKHRTHYLWEDVFSPVVLLDIIGRFLHI  257
             KL  ++TYFLPF++G N      GAGNP  P+G   T YLWE+V+++  LLDI+ RF+++
Sbjct  207   KLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSG-YPTSYLWENVLTSYQLLDIFERFMNL  265

Query  258   EKKERQIEVTRAGKSDLQKVTSESLIFPRYHQLDVVRKLLANAKAKGPGRNYLVQHSAGS  317
             E K +                   LIFPRYHQLDVV+KL+++++  GPG+NYL+QHSAGS
Sbjct  266   EEKKKL------------------LIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGS  307

Query  318   GKSNSIAWLAHRLSSLHNDKDEKIFHTVIVITDRLVLDRQLQETIYQFEHKQGVVVKI--  375
             GKSNSIAWLA +L+SLH++ D+ I+ +VIV+TDR VLDRQLQ+T+  FEH  G V  I  
Sbjct  308   GKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETIGD  367

Query  376   DRDSAQLAEAIQNSTPIIVTTLQKFPFAASHIERLESRNFAIIVDEAHSSQSGEAATEVR  435
             ++ S +L  AI++   II+TTLQKFP    +I+   +R+FAI+VDEAHSSQ+G +A  ++
Sbjct  368   NKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTGSSAQKLK  427

Query  436   HLLSMNEIE----QTVRQRAEEEDLSDIDEAILKAAAGRSRQKNLSYFAFTATPKEKTLS  491
             H L+ +E      Q   +  E++ L D ++ I+++  +++++ NLS+FAFTATPKEKT+ 
Sbjct  428   HALADKEASLKEYQEFEESVEDQSLDD-QDQIVQTLLSQGQHDNLSFFAFTATPKEKTIE  486

Query  492   IFDEPGENGN-SPFHLYSMRQAIQEHFIKDVLENYTTYKTYYKLVNTAGEDPLVPKSKAA  550
             +F+    +G+  PFH+YSMRQAI+E FI +VL+NY TY+T YK+ ++  EDP +PK+ A 
Sbjct  487   MFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAV  546

Query  551   KALARFMSLHPHNIAQKTEVMIEHFRHHTMHKIGGRAKAMVVTSSRLHAVRYKEAFDKYI  610
             +A+A++ SLHP  + QK+E+MIE+FR  T   + GR+KAM+VT+SRLHAVRY + F KYI
Sbjct  547   RAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYI  606

Query  611   QDNNYQGIKTLVAFSGTVIDKDIPGVSYTEVGMN-----GGIKEKELPEKFATNEYQVLL  665
             +++ Y ++  LVAFSGTV D    G+ YTE  MN       I+E++L E F ++++++L+
Sbjct  607   KEKGYTDMDVLVAFSGTVEDD---GIEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLI  663

Query  666   VAEKYQTGFDQPLLHTMYVDKRLAGIQAVQTLSRLNRTHAGKEDTFVLDFYNETEDIFES  725
             VAEKYQTGFD+PLLHTM+VDKRL G++AVQTLSRLNRT +GK DTF+LDF N +E+I+E+
Sbjct  664   VAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEA  723

Query  726   FKPYYKITESGGHADYARLAELKSEIDTAQILHHDEIDAFCNVFFAPQEIESKKDH--GR  783
             F+P+Y  T    + +   + + +S +   +I ++D+I++  ++    Q  + ++D+  GR
Sbjct  724   FQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKL--NRQAKQKQNDQLLGR  781

Query  784   LESILQSAVDRFKDLATEAREDYRAKLKSFQLLYSYLSQMV-PFQDAEYEKYYTVIRYYI  842
             L S+L++ + R+ DL+ + + D+R  L++F+  Y+Y++Q+   F+    E   +++  ++
Sbjct  782   LSSVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEE--SIFTGFL  839

Query  843   KKLPLPIGDPIPEVDDDINLKYYRLQKISEGRIDL--ESGTANPLKGPMDV-GTGNPDEE  899
              K+         +++D ++L YY+LQ    G I L  E      L  P +V +T  P+EE
Sbjct  840   LKFIPEKQRNYIDIEDKVKLEYYKLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPEEE  899

Query  900   KIRLSELVDMLNERFGTDFTQADQLFFDQVAEEAVN--DEALQAAGRVNTLDNF-KLVFD  956
                L+E+++ +NERF  DFTQ+D+++  ++ E  +N  D  L   ++ N+ + F + +F+
Sbjct  900   YDSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAKLVNMAQNNSEEMFANSLFQ  959

Query  957   QALMDYFIKRMDGNEKIFTKLMNDE-SFRAVASGHLLKKVYGRIRED  1002
             Q + D++I + +  E  ++K+ +++  F       L K  Y ++R +
Sbjct  960   QQFQDFLIDQYNQGEAAYSKMFSNNRDFYDTVYQLLAKDYYRWLRSQ  1006

23) Clocl_0191 in NC_016627


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  638 bits (2413),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 440/988 (45%), Positives = 697/988 (71%), Gaps = 35/988 (3%)

Query  10   EKGFEEYVEEHLLN-SGY--IKGNPDDYNKEFAIDAKLLIDFLEDTQPKKMERLREIYKE  66
            E  FE+ +E  L++ +G   ++ +  +Y+ ++A+D+ +L++F+ +TQPK+  R   IY+ 
Sbjct  9    EINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYVSIYRT  68

Query  67   QYQFKllsrlnrelnnrGMIDVLRHGIKDYGVYLDLAYFRPASKLNDEMIKLYEKNRISV  126
            + + K+L RLN E+ N+G+++VLR GI+D GV + + YF+PAS LN E IK YE NR+  
Sbjct  69   NAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEANRFQC  128

Query  127  TRQVHYSTKNENSIDMLICINGLPVVVLELKNPFTGQTYQDAIMQYKKDRSPNELLFQFK  186
             RQ +YS K  N+IDM++ ING+P+V LELKN +TGQ  ++A +Q+ +DR P+EL+FQF+
Sbjct  129  VRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKELIFQFN  188

Query  187  KRAIVFFAVDTQEAYMTTRLSGDKTSFLPFnkgcdgg-----kgnpdnpdgLKTDYLWEE  241
             R +V+FAVD  +  MTT+L+ ++T FLPF++G +G       GNP NP G  T YLWE+
Sbjct  189  SRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLWEN  248

Query  242  ILQKDSLMDILKRFVFIETQEKKDIDGNTYTSETVIFPRYHQLDVVRKLEADAKKKGVGT  301
            +L    L+DI+ RF  ++ +EKK +         +IFPRYHQLDVV+KL +D++  G G 
Sbjct  249  VLTSYQLLDIFERF--MNLEEKKKL---------LIFPRYHQLDVVKKLISDTQHHGPGK  297

Query  302  NYLVQHSAGSGKTNSISWLAHRLANLHDDNDNPVFDSVIVITDRRVLDRQLQDSIYQLEH  361
            NYL+QHSAGSGK+NSI+WLA +LA+LH ++D+P++ SVIV+TDR VLDRQLQ+++  +EH
Sbjct  298  NYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFEH  357

Query  362  KYGVVQKI--DKDSNQLADALKSGTRIIISTLQKFPFIIEKVGELENRKYAVIIDEAHSS  419
              G V+ I  +K S++L  A++   +III+TLQKFP I + +++   R +A+++DEAHSS
Sbjct  358  TVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSS  417

Query  420  SAGENMASLREVLS--VSTleeaakldeelegkeYDPEEEILKTIKKRGKQPNISFFAFT  477
             +G +   L++ L+   ++L E   ++E +E++  D +++I++T+  +G++ N+SFFAFT
Sbjct  418  QTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFT  477

Query  478  ATPKAKTLEMFGTIGPDGLPHPFHLYSMRQAIEEGFILDVLQNYVTYETYFKLAKKIEDD  537
            ATPK KT+EMFGT  +DG  HPFH+YSMRQAIEEGFIL+VLQNY+TY+T +K+AK IE+D
Sbjct  478  ATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEED  537

Query  538  PTFDRAKATKAITRYVSLHPHNIAQKTEIMVEHFRSVTRHKIGGRAKAMVVTSSRLHAVR  597
            P + ++ A +AI++Y SLHP  + QK+EIM+E+FRSVT+  + GR+KAM+VT+SRLHAVR
Sbjct  538  PELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVR  597

Query  598  YKHAFDEYIKKKGYRDMKTLVAFSGTVKDGGVDYKESDMN------GFKESELPERFATD  651
            Y + F  YIK KGY DM  LVAFSGTV D+G++Y E+ MN       ++E++L E F ++
Sbjct  598  YMQEFKKYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSE  657

Query  652  EYQVLLVAEKYQTGFDQPLLHTMYVDKKLSGVKAVQTLSRLNRTCTGKDDTFILDFVNKA  711
            ++++L+VAEKYQTGFD+PLLHTM+VDK+L GVKAVQTLSRLNRT  GK DTFILDFVN A
Sbjct  658  DFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTA  717

Query  712  EDIQEAFKPYYQATIVEEVTEPNLLYDIETQLHSYGVYLKEELDKFAYIYFKPKDKKTSK  771
            E+I EAF+P+Y+AT + E  + NL+YD +++L+ + +Y  ++++    +  ++K+K+  +
Sbjct  718  EEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQ  777

Query  772  DRAMLNHLIDITVERFKKLEEQRKQDFSSQATKYIRLYSFILQITPFEDVElhklyvylt  831
              + L+ ++   + R+  L E+ + DF     ++ + Y++I QI    D EL    ++  
Sbjct  778  LLGRLSSVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFTG  837

Query  832  yllkklpkgkGSTVHLADEIALEYYTTRKTFEGSISLTADD--EVPVTPVKFAGTGVKEE  889
            +LLK +P  + + +++ D + LEYY  +  F G I+L  +D  +  ++      + V+ E
Sbjct  838  FLLKFIPEKQRNYIDIEDKVKLEYYKLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPE  897

Query  890  QE-EYLSSIIERLNKRFGTDFTKADQLSVEQIKEDF--AADEDLVQKAKTNTIDDFRLA-  945
            +E + L+ II+++N RF  DFT++D++ V +++E +   +D  LV+ A+ N+ + F  + 
Sbjct  898  EEYDSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAKLVNMAQNNSEEMFANSL  957

Query  946  FEKVFINKVIDRMDQNQAFFTRVLDDEQ  973
            F++ F + +ID+ +Q +A +++++ +++
Sbjct  958  FQQQFQDFLIDQYNQGEAAYSKMFSNNR  985

24) Nitsa_1293 in NC_014935


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  626 bits (2365),  Expect = 3e-180, Method: Compositional matrix adjust.
 Identities = 415/1021 (41%), Positives = 673/1021 (66%), Gaps = 49/1021 (4%)

Query  5     TTENTFECAIVDALCKDGGYRQI--EGSDYSAEIGMFKEEVIAFLRETQPKRWEKISAIH  62
               E  FE  I  +L + GG   +  ++++Y A+I++    ++ F+++TQPK W +  +I 
Sbjct  7     NKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYVSIY  66

Query  63    GEDVEKRVLARLYKELDLRGSLDVLRNGFTDYGVKFRMAYFAPESRLNPETIALYEQNRL  122
               + E++ L RL  E+  +G L+VLR+G+ D GV F++ YF P S LN E I  YE NR+
Sbjct  67    RTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEANRF  126

Query  123   AVARQVYFSRKDKKSIDLVIVLNGIPVLTIELKNHFTGQSTDDAKRQYRNTRDPKELLFA  182
                RQ  +S K +++ID+V+++NGIP++++ELKN++TGQ+ ++A+ Q+ + RDPKEL+F 
Sbjct  127   QCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKELIFQ  186

Query  183   FKKRALVHFALDDEEVYMSTKIEGNKTFWLPFNKgynngagnppnddgyK-----TEYFW  237
             F+ R LV FA+D+ +V M+TK+   +T+ LPF++G N  +     ++  +     T Y+W
Sbjct  187   FNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLW  246

Query  238   KEILQRDSLLEIIGRFIHLQKEEITVEGRIYTKEKMIFPRYHQLDAVRLLRNRARKEGAG  297
              ++L    LL+I+ RF++L+            K  +IFPRYHQLD V+ L + ++ +G+G
Sbjct  247   ENVLTSYQLLDIFERFMNLEE----------KKKLLIFPRYHQLDVVKKLISDTQHHGPG  296

Query  298   QNYLIQHSAGSGKSNTIAWLAYRLSSLHDEQDERVFDSVIVITDRRVLDKQLQDTIYQFE  357
             +NYLIQHSAGSGKSN+IAWLAY+L+SLH ++D+ ++ SVIV+TDR VLD+QLQ+T+  FE
Sbjct  297   KNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFE  356

Query  358   HKTGVVRKI--DKDSTQLAESISRGIPIIITTLQKFPYILEKVGDIPGRNYAVLIDEAHS  415
             H  G V  I  +K S +L  +I+    IIITTLQKFP I + +++ +GR++A+L+DEAHS
Sbjct  357   HTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHS  416

Query  416   SQGGEASKKMKEVLG--MPVLDEVTKEDEYDDEDRINDM--VAKSAKARGKQSNLSFFAF  471
             SQ G +++K+K+ L+   + L E    +E  +++ ++D   + ++  ++G++ NLSFFAF
Sbjct  417   SQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAF  476

Query  472   TATPKEKTLSIFGETGDDGKPRPTHLYSMRQAIEEGFILDVLQNYTTYERFVKITKAIEE  531
             TATPKEKT+ +FG    DG  +P H+YSMRQAIEEGFIL+VLQNY TY+   KI+K+IEE
Sbjct  477   TATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEE  536

Query  532   DPKVNKKKAAKAIRSFIDLHPHNIAQKTEVIIEHFRSVVAHKIGGKAKAMVVTSSRLHAK  591
             DP + K  A +AI  +  LHP  + QK+E++IE+FRSV    + G++KAM+VT+SRLHA 
Sbjct  537   DPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAV  596

Query  592   RYFEAFEAYIEEKGYEQELKVLVAFSGKIIDPEDLTYPDGVSEPQLTG--YGEKELPEVF  649
             RY + F  YI EKGY  ++ VLVAFSG + + +++ Y +   +   +G    E++L E F
Sbjct  597   RYMQEFKKYIKEKGYT-DMDVLVAFSGTV-EDDGIEYTEPKMNLTHSGERIQENQLKEAF  654

Query  650   KKDEYRILIVADKYQTGFDQPLLHTMYIDKKLSGVKAVQTLSRLNRIAPGKEDTFVLDFI  709
               +++ +LIVA+KYQTGFD+PLLHTM++DK+L GVKAVQTLSRLNR  PGK DTF+LDF+
Sbjct  655   HSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFV  714

Query  710   NDRETILKSFQDYYEVTSIEEDNDPNHLYDLKNTLDAFQVYWPSEVEALAHIYFDPAYQH  769
             N  E I  +FQ +YE TS+ E+ + N +YD ++ L  F++Y   +++++  +  ++  ++
Sbjct  715   NTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQ  774

Query  770   NARMQSKLYALIDPAVDRFNVLDEEQQDSFKKSLRTWTKLYSYFSQVMPFWDAEFEK---  826
             N ++ ++L +++ P + R++ L E+ Q  F+ +LR   K Y+Y++Q+    D  F+K   
Sbjct  775   NDQLLGRLSSVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQI----DRTFDKELL  830

Query  827   ----FYAYAklllkklpkkelGESLQFEDELALEYYRLEKIKEGRLEL--QKGEEGVLQG  880
                 F ++   ++    +    + +++ED + LEYY+L+    G + L  +  E+G L  
Sbjct  831   EESIFTGFLLKFIPEKQR----NYIDIEDKVKLEYYKLQEDFKGDIALVNEDVENGQLAH  886

Query  881   ISE-AGLHREKDEKEALSEIIKILNERFGTEFEEADRLFFEQIEEDLV--ADETLQKQAK  937
              SE  +  R  +E ++L+EII  +NERF  +F ++DR++  ++ E L+  +D  L + A+
Sbjct  887   PSEVNATVRPEEEYDSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAKLVNMAQ  946

Query  938   VNKLDTFKYA-FNDMFTDKLIERMDQNQDIFEKIL-EDKDFGELVKGMMMKSVYRRLKDM  995
              N  + F  + F++ F D LI++ +Q +  + K++ +++DF + V  ++ K  YR+L+  
Sbjct  947   NNSEEMFANSLFQQQFQDFLIDQYNQGEAAYSKMFSNNRDFYDTVYQLLAKDYYRWLRSQ  1006

Query  996   K  996
             K
Sbjct  1007  K  1007

25) Ethha_1801 in NC_014828


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  620 bits (2341),  Expect = 2e-178, Method: Compositional matrix adjust.
 Identities = 429/949 (46%), Positives = 654/949 (69%), Gaps = 49/949 (5%)

Query  2    AIQTKERNFEQEIEWWLTE-GAVEADRYKKGNPVDFDRKLALDKGAILAFIKDTQPDEWQ  60
             I+ KE NFEQ+IE  L + G+ E+ R++  +   +D ++ALD   +L F+K+TQP +W+
Sbjct  4    VIKNKEINFEQDIEASLVQYGGWESVRFQDTH---YDANIALDPTVLLEFVKQTQPKNWK  60

Query  61   ---GLCRRHGSEVSAEAEFFKRLNSELNSRGMIDVLRHGVVDLGISVRLAYFKPGSGMNQ  117
               ++ R      +AE  F+KRLN E+ ++G+++VLR G+ D G+S ++ YF+P+S++N 
Sbjct  61   RYVSIYR-----TNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNT  115

Query  118  SLTALYAKNVLQITRQVKYSLQNENSIDTVIFLNGLPIITIELKNPLTGQTYRNAITQYE  177
                 Y  N +Q  RQ +YS +  N+ID V+ +NG+P++++ELKN  TGQ   +A  Q+E
Sbjct  116  ENIKNYEANRFQCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFE  175

Query  178  NDRDPRELLLAFKKRAIVHFAVDTEEVWMTTWLRKLDTTFIPFNKGTEDHG----AGNPV  233
            +DRDP+EL++ F+ R +V FAVD  +V MTT L K +T F+PF++G+++ G    AGNP 
Sbjct  176  QDRDPKELIFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPS  235

Query  234  AEGGDYRTAYLWKEILQRDSILDILHRFVQVSKDDKGKEKLIFPRYHQLDAVRKLVADAY  293
              +G Y T+YLW ++L    +LDI++RF+++   +  K  LIFPRYHQLD V+KL++D+ 
Sbjct  236  NPSG-YPTSYLWENVLTSYQLLDIFERFMNL---EEKKKLLIFPRYHQLDVVKKLISDTQ  291

Query  294  ANGSGKNYLIQHSAGSGKSNSIAWLAHHLANLHDIHDEVIFHSIIVITDRRVLDKQLQRD  353
             +G+GKNYLIQHSAGSGKSNSIAWLA HLA+LH  +D+ I+ S+IV+TDR VLD+QLQ  
Sbjct  292  HHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNT  351

Query  354  IYNMEHKPGVVVLV--DKNSKQLTTALNNGDKIIVCTLQKFPFVDVQKVSTTGKRFAIIV  411
            + + EH  G V  +  +K S++L TA+N+  KII+ TLQKFP +  +  +T+G+ FAI+V
Sbjct  352  LMSFEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILV  411

Query  412  DEAHSSQTGDASKRMKEILADISLQGDDVVEKKLHefaveeakaeaeekdldeaiadeMA  471
            DEAHSSQTG +++++K+ LAD         E  L E+   E   E +  D ++ I + + 
Sbjct  412  DEAHSSQTGSSAQKLKHALADK--------EASLKEYQEFEESVEDQSLDDQDQIVQTLL  463

Query  472  AHGQQPNLSFFAFTATPKQKTLEIFGQTTAAGKPEPFHLYSMRQAIEEHFIFNVLENYTT  531
            ++GQ+ NLSFFAFTATPK+KT+E+FG   A G  +PFH+YSMRQAIEE FI+NVL+NY T
Sbjct  464  SQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMT  523

Query  532  YETYFQIGKKIADDPVYGKNLANKALGKYMSLHPHNLAQKAEVIIEHFRSQVQHRIGGQA  591
            Y+T ++I+K I +DP   K  A +A++KY SLHP  L QKAE++IE+FRS  Q  + G++
Sbjct  524  YNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRG  583

Query  592  KAMLVTGSRLHAVRYFFEFQRYIKKMHY-DLGILVAFSGTVKDKVSGEIKEYTESNLN--  648
            KAM+VT+SRLHAVRY  EF++YIK   Y D+++LVAFSGTV D    +  EYTE+++N  
Sbjct  584  KAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVED----DGIEYTEPKMNLT  639

Query  649  ----KFPDSETVEKFDTAEYQLLIVAEKYQTGFDQPLLHTMYVDKKLTGIKAVQTISRVN  704
                ++ +++  E F++ +++LLIVAEKYQTGFD+PLLHTM+VDK+L G+KAVQT+SR+N
Sbjct  640  HSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLN  699

Query  705  RACKGKTETFILDFVNSREDIEKAFQDYYQATGVAETTDPNTIYDIKNFLDRFMLYRDSE  764
            R+  GKT+TFILDFVN+ E+I  AFQ +Y+AT++ E  + N IYD ++ L +F +Y D +
Sbjct  700  RTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDD  759

Query  765  IEAFAKVFFKETKNQGNIDLAKLNGFIDPAVDRYNALTEDQDKMDFKGALAKFIRLYAFL  824
            I++  K+  +  ++Q +  L++L++ + P + RY+ L ED +  DF+ +L +F + Y ++
Sbjct  760  IQTVMKLNRQAKQKQNDQLLGRLSSVLRPVISRYSDLPEDVQ-YDFRVTLRNFNKWYNYI  818

Query  825  THIINLGDENLHKFHAYAKCLLRKLPKSDTERT-PDIGSDVMLQYYRVQKVAEGSIALAN  883
            ++I    D +L     ++  LL+ +P  + +R   DI   V L+YY++Q    G IAL N
Sbjct  819  AQIDRTFDKELLEESIFTGFLLKFIP--EKQRNYIDIEDKVKLEYYKLQEDFKGDIALVN  876

Query  884  ED----GILKSKTSSTGLPIEDEKEALSAIIQSLNERLGTNFTEMDKVL  928
            ED     +  +   ++ +  E+E ++L+ II+ +NER+  +FT+ D+VL
Sbjct  877  EDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPNDFTQGDRVL  925

26) Cyan8802_3992 in NC_013161


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  619 bits (2338),  Expect = 3e-178, Method: Compositional matrix adjust.
 Identities = 400/997 (41%), Positives = 663/997 (67%), Gaps = 47/997 (4%)

Query  1    MNTSEKNFESDIQAYLLENGYHSRTS-----NDYDKKLCLIPQDVLNFINATQPQEWQKY  55
            ++  E NFE DI+A L++  Y ++ S      +YD ++ L P  +L+F++ TQP++W++Y
Sbjct  5    IKNKEINFEQDIEASLVQ--YGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRY  62

Query  56   QTQYGDDAQTKLLQRLAQQIKKRGTVEILRKGLKANGCKFKLAYFRPSTALNDETQRLYQ  115
             + Y  +A+ K+L+RL ++I ++G +++LRKG++  G  FK+ YF+P+++LN E  + Y+
Sbjct  63   VSIYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYE  122

Query  116  GNFFSLIRQFYYSEKNQNSIDLAIFLNGLPLFTCELKNSFKGQTVENAIKQYRNDREPRE  175
            +N F  +RQF YS+K +N+ID+ + +NG+PL + ELKN + GQ VE+A  Q+ +DR+P+E
Sbjct  123  ANRFQCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKE  182

Query  176  TVLSFGVC-LSHFAVDPNLVYMTTHLQGKKTKFLPFNQG-----RDNGHGNPPSALSYPT  229
             ++ F    L  FAVD   V MTT L   +T FLPF+QG     R  G GNP+++ +YPT
Sbjct  183  LIFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPT  242

Query  230  AYLWQQIWQKDSILNLIQNFITQYEEEDDKGNKTGEKKLIFPRYHQLDTINRLINHAKDH  289
            +YLW+++     +L++++ F+     E+ K      K LIFPRYHQLD +++LI+++++H
Sbjct  243  SYLWENVLTSYQLLDIFERFMNL---EEKK------KLLIFPRYHQLDVVKKLISDTQHH  293

Query  290  KTGQKYLIQHSAGSGKSNTIAWLAHQLVSLHEREDNRVFDSILVITDRKALDKQLQRNLK  349
              G++YLIQHSAGSGKSN+IAWLA +L SLH  ED+ ++ S++V+TDR  LD+QLQ  L 
Sbjct  294  GPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTLM  353

Query  350  QFETTSGVVENI--DKTSRQLKEALENGKNIIVTTLQKFPGVIDQINSLKGQKFAIIIDE  407
             FE T G VE I  +KTS++LK A+++ K+II+TTLQKFP + D+I++  G+ FAI++DE
Sbjct  354  SFEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDE  413

Query  408  AHSSQTGENSRQLKTVLStqtleeae-----tqeqdiedyiedrieeAARTRGNLPNLSY  462
            AHSSQTG ++++LK  L+ +     E        +D     +D+I ++  ++G+  NLS+
Sbjct  414  AHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSF  473

Query  463  FAFTATPKPKTLELFGIKQPDGTFKPCSLYSMRQAIEEGFILDVLQNYTTYQTYFSLLKT  522
            FAFTATPK KT+E+FG KQ+DG++ P  +YSMRQAIEEGFIL+VLQNY TY+T + + K+
Sbjct  474  FAFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKS  533

Query  523  VENDPHYDRNKAGRLLRNFVDLHPHNINAKVAIIAEHFHNNVAHQINNQAKAMIVTRSRL  582
            +E+DP+  +  A R + ++  LHP  +  K  I+ E+F++     ++ ++KAMIVT SRL
Sbjct  534  IEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRL  593

Query  583  HAVRYKLALDNYLRENGYP-YQSLVAFTGTVKDGGRDFTETGMNTASSGVSIPEKATADT  641
            HAVRY   + +Y++E+GY   + LVAF+GTV D+G ++TE  MN + SG  I E+   ++
Sbjct  594  HAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQLKEA  653

Query  642  FNQNLYKFLIVANKFQTGFNQPLLTAMYVDKKLGGVNAVQTLSRLNRTYSQKESTVILDF  701
            F+ + +++LIVA+K+QTGF++PLL +M+VDK+L GV+AVQTLSRLNRT + K  T ILDF
Sbjct  654  FHSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDF  713

Query  702  ANEIDVIQSAFENYYDRTVLSQETDVNLVYDIQQQLDDYDFYTASDITDFAQIYFNPKAT  761
             N  + I  AF+ +Y+ T L +E ++NL+YD Q +L  +++Y   DI    ++  ++K  
Sbjct  714  VNTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQK  773

Query  762  QD-----RLHSILMPVIDRYQEATEAEQFSFRNKLKDFIRLYRFIGQLIGCPDSELEQFY  816
            Q+     RL S+L PVI RY +  E  Q+ FR  L++F + Y +I+Q+    D EL +  
Sbjct  774  QNDQLLGRLSSVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEES  833

Query  817  EFARHLAPKLPFAQQQLP--LEVQQNIELSQYRIQRTYTGQIDLKRGE---RQLDPIIAA  871
             F+  L   L F  ++    +++++++ L  Y++Q  + G+I L   +    QL      
Sbjct  834  IFTGFL---LKFIPEKQRNYIDIEDKVKLEYYKLQEDFKGDIALVNEDVENGQLAHPSEV  890

Query  872  GTGNPPVEDREPLSVIIEQLNQQFGTNFTEDEQVFIEQLEHKL-DNSDSLQASLKINSLE  930
             +   P E+ ++L+ II+++N++F  +FT++++V++ ++ + L +N+D+   ++  N+ E
Sbjct  891  NATVRPEEEYDSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAKLVNMAQNNSE  950

Query  931  NV--RLTFNNLTNEFM-QEMIESNFNFYKHFNDDSEF  964
            ++     F++  ++F+ ++  +++  + K F+++ +F
Sbjct  951  EMFANSLFQQQFQDFLIDQYNQGEAAYSKMFSNNRDF  987

27) CLOAM0220 in NC_020449


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  617 bits (2333),  Expect = 9e-178, Method: Compositional matrix adjust.
 Identities = 426/1032 (42%), Positives = 664/1032 (65%), Gaps = 74/1032 (7%)

Query  5    HNEQSFESYIESVMQD--GWTSV--ANTAFDVGNALFAEQTIDFIKQSQPTLWAELAKLN  60
            ++E +FE  IE+ + +  GW SV   +T +D   AL +   ++F+KQ+QP  W     + 
Sbjct  7    NKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYVSIY  66

Query  61   GDLLPGQIIKALVKERNLKGTLHILRHGFKFQGNTLKLAYYRPAHSLSKEAEALYQCNTF  120
                  +++K L  E    G LH+LR G++ +G ++K+ Y++PA SL+ E    Y+ N F
Sbjct  67   RTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEANRF  126

Query  121  QVCRQVFYHPDKQQSIDMVLAINGIPVATLELKNPGTGQNVKHAIKQYQNDRDPSAPLLS  180
            Q  RQ  Y    +++IDMVL INGIP+ +LELKN  TGQNV HA  Q+++DRDP   ++ 
Sbjct  127  QCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKELIFQ  186

Query  181  FKTGALVHFAVDTDEVYMTTHLMKQKTSFLPFNRGSNPQSVDCGKGNPIHPSGHRTAYLW  240
            F++  LV FAVD  +V MTT L K +T FLPF++GSN  +   G GNP +PSG  T+YLW
Sbjct  187  FNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLW  246

Query  241  EDVLQPDSLLEIVGSFIFIENAGKKDEHIIFPRYHQLDSVRRLLAQVKSDQTGKNYLIQH  300
            E+VL +  LL+I   F+ +E+   K   +IFPRYHQLD V++L+++ + +  GKNYLIQH
Sbjct  247  ENVLTSYQLLDIFERFMNLEE---KKKLLIFPRYHQLDVVKKLISDTQHHGPGKNYLIQH  303

Query  301  SAGSGKTNSISWLAHRLANLHTDQDKLIFDCVIVITDRVVLDRQLQDAIYQIEHAMGVVA  360
            SAGSGK+NSI+WLA +LA+LH+++D+ I+  VIV+TDR VLDRQLQ+++  +EH++G V 
Sbjct  304  SAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVE  363

Query  361  PIKEG--SQQLANALVDGTKIVITTLQKFPFILRGLLRIAGAKDTDMPDEAALLKSKAWQ  418
             I +   SQ+L  A+ D  KI+ITTLQKFP I   +                        
Sbjct  364  TIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEI------------------------  399

Query  419  KKIAGRKYAIIVDEAHSSQTGEAARDMKQILGDK------------AVRTEDVEDWQDEL  466
             + AGR +AI+VDEAHSSQTG +A+ +K+ L+DK            +V  + ++D QD++
Sbjct  400  DNTAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDD-QDQI  458

Query  467  NLVMESRGQQPNLSFFAFTATPKGKTLELFGTHG-----KAFHNYSMRQAIEEGFILDVL  521
               + S+GQ+ NLSFFAFTATPK KT+E+FGT        +FH YSMRQAIEEGFIL+VL
Sbjct  459  VQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVL  518

Query  522  QRYTTYSTYFKMIKKTADDPSMPAKKAAKKLCKFMRLHPRNVSQKTEIIIEHFRSCIMPL  581
            Q Y TY+T +K+ K   +DP +P   A + + K+  LHP+ + QK+EI+IE+FRS     
Sbjct  519  QNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKA  578

Query  582  IGRKAKAMVVTDSRLQAVRYMLAFQKYIGENHYTDVHPLVAFSGTVIDPETELEYTEPGM  641
            +  ++KAM+VT SRL+AVRYM  F+KYI E+ YTD++ LVAFSGTV   +  +EYTEP M
Sbjct  579  VQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTV--EDDGIEYTEPKM  636

Query  642  NIDYKNGRHISETQLKDRFGSEDYQILLVANKYQTGYDQPQLCAMYVDKRLDGVQAVQTL  701
            N+   +G +I E QLK+ F SED+++L+VA+KYQTG+D+P L +M+VDKRL GV+AVQTL
Sbjct  637  NLT-HSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTL  695

Query  702  SRLNRIYPGKEAPFVLDFVNKAEDILAAFKPYYTVTELESESDPTHLEEIKHELNQMQIY  761
            SRLNR  PGK   F+LDFVN AE+I  AF+P+Y  T L  E +   + + +  L + +IY
Sbjct  696  SRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIY  755

Query  762  DWKEVEDFAKIFYKPLGEQKRGDH--AALQKHLQSAVERYKQLESDEDRDKFHDKLKAYV  819
            +  +++   K+  +  + QK+ D+  + L   L++ + RY +L +++ +  F+  L+ + 
Sbjct  756  NDDDIQTVMKL--NRQAKQKQNDQLLGRLSSVLRPVISRYSDL-PEDVQYDFRVTLRNFN  812

Query  820  RLYAFVTQLINYTDQE--QEMLYSFGRFLLPHIHPSDSRDAYPEKD--VELQYYRLQKVM  875
            + Y +++Q+    D+E  +E +  F  FLL  I  ++ +  Y + +  V L+YY+LQ   
Sbjct  813  KWYNYIAQIDRTFDKELLEESI--FTGFLLKFI--PEKQRNYIDIEDKVKLEYYKLQEDF  868

Query  876  EGSIDL--SEGEEVKVKSPTD-TGTRKAKEEDKPLSEIIETLNERFGTDFSEADRLFFEQ  932
             G I L   + E+ ++  P++  +T ++ EE  +L+EII+ +NERF  DF+++DR++  +
Sbjct  869  KGDIALVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPNDFTQGDRVLVKN  928

Query  933  IKETALQ--DESVLKTAAANPLDKFELGI-EQIIKDLMMNRLKENDKIVSR-YMDDEKFQ  988
            ++ET ++  D  +++ A  N+ + F  ++ +Q ++D+++++ ++ +   S+ + ++  F 
Sbjct  929  MRETLINNTDAKLVNMAQNNSEEMFANSLFQQQFQDFLIDQYNQGEAAYSKMFSNNRDFY  988

Query  989  KVIFNLLSKELF  1000
              +++LL+K+ +
Sbjct  989  DTVYQLLAKDYY  1000

28) NIES39_A06620 in NC_016640


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  615 bits (2322),  Expect = 6e-177, Method: Compositional matrix adjust.
 Identities = 431/1035 (42%), Positives = 683/1035 (66%), Gaps = 71/1035 (6%)

Query  7     VFPQSEKAFEQVIEDSLIKQG---YVK-PLTPFNKNLAIFPDIALNFIRQTQPKAWAKLE  62
             V+ + E  FEQ IE SL++ G    V+   T ++ N+A+ P + L+F++QTQPK W +  
Sbjct  4     VIKNKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYV  63

Query  63    ALHGENTGNQIITDLCKWMDTYGSLHTLRHGFKCYGRTLRIAYFKAAHSLNSDLETCYKA  122
             ++   N+ ++++  L   +   G LH LR G++  G ++++ YF++A SLN++    Y A
Sbjct  64    SIYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEA  123

Query  123   NQLGITRQLQYSDRHRNELDITLSLNGIPIVTIELKNPLTGQTVEHGKQQYRQDRDPHEI  182
             N++   RQ+QYS++ RN +D+ L +NGIP+V++ELKN  TGQ VEH++ Q+ QDRDP E+
Sbjct  124   NRFQCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKEL  183

Query  183   IFEFKRRTLVHFTVDTEEVWMTTRLAGKATHFLPFNQGDN-----NGAGNPRDPQGRTYR  237
             IF+F+ R LV F+VD  +V MTT+LA   T FLPF+QG N      GAGNP +P G  Y 
Sbjct  184   IFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSG--YP  241

Query  238   TAYFWENILQPDSLLDLLAQFLHVQIEEKYDDRGRKYQKETMIFPRFHQLQAVRKLIAAT  297
             T+Y+WEN+L +  LLD++ +F++  +EEK         K  +IFPR+HQL+ V+KLI+ T
Sbjct  242   TSYLWENVLTSYQLLDIFERFMN--LEEK---------KKLLIFPRYHQLDVVKKLISDT  290

Query  298   QEEGVGSNYLIEHSAGSGKSNTIAWLTHRLVSLHNTENQRIFETVIVISDRRILDRQLQD  357
             Q++G G NYLI+HSAGSGKSN+IAWL+ +L SLH+ E+Q I+ +VIV++DR +LDRQLQ+
Sbjct  291   QHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQN  350

Query  358   TIYQFEHRQGVIQKI--DKDSKQLAEALESAVPLIITTLQKFPFVTRQLLKLAEERNEQG  415
             T+  FEH  G ++ I  +K S++L  A++    +IITTLQKFP +  ++        ++ 
Sbjct  351   TLMSFEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEI--------DNT  402

Query  416   SGRLTTRRCAVIIDEAHSSQSGDTATELKGVLGGETLHQKA----REMAQEEGLEHLEQM  471
             +G    R  A+++DEAHSSQ+G +A  LK  L++     K      E  ++++L++ +Q+
Sbjct  403   AG----RSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQI  458

Query  472   FLSMAKRSRQDNLSFFAFTATPKHKTLKFFG-REGE----PFHRYTMRQAIEEGFIMDVL  526
               ++  ++++DNLSFFAFTATPK+KT+  FG ++++    PFH Y+MRQAIEEGFI++VL
Sbjct  459   VQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVL  518

Query  527   KNYTIYTAYFKLLKDSGDDPHVQRKQAAKSLTHFMRLHPHNIAQKTQIMVEHFHHFTRHK  586
             +NY  Y + +K+ K   +DP++ + +A ++++ +  LHP  + QK++IM+E+F+  T+  
Sbjct  519   QNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKA  578

Query  587   IGGKAKAMVVTGSRLEAVRYKQSFDKYIKEKGY-DIKSLVAFSGIVNDDKIPEKTYTEEE  645
             + G++KAM+VT+SRL+AVRY Q F KYIKEKGY D+  LVAFSG V+DD I    YTE  
Sbjct  579   VQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVEDDGI---EYTEPK  635

Query  646   MN-----QGIREKELAEKFAGDDYQVLLVAEKYQTGFDQPLLHTMYVDKRLAGIKAVQTL  700
             MN     + I+E++L E F ++D+++L+VAEKYQTGFD+PLLHTM+VDKRL G+KAVQTL
Sbjct  636   MNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTL  695

Query  701   SRLNRTHPHKEDTFILDFVNKRQEIQEAFQQFYEGAELGQEAEPGQLYHLKSQLDASGIY  760
             SRLNRT P K DTFILDFVN  +EI EAFQ FYE++ L +E +   +Y+ +S+L    IY
Sbjct  696   SRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIY  755

Query  761   LSEEVNRFCTIYFKPKQRQNPSDHQGMNAALDPAVDRFLALYEQDVEAAELWRRKLTAFR  820
               ++++    +  ++KQ+QN      +++ L P + R+  L  +DV+     R  L  F 
Sbjct  756   NDDDIQTVMKLNRQAKQKQNDQLLGRLSSVLRPVISRYSDL-PEDVQYD--FRVTLRNFN  812

Query  821   NLYSFLSQIIPYQDSDLEQVYIFLRHLATKLLR--PSNQDQY-DFDSEIKLEYYRLQKIS  877
             + Y++++QI    D +L +  IF    +  LL+  P +Q +Y D++  +KLEYY+LQ   
Sbjct  813   KWYNYIAQIDRTFDKELLEESIF----TGFLLKFIPEKQRNYIDIEDKVKLEYYKLQEDF  868

Query  878   EGSIHLKKGETIPQD-GSPAIGTAILR--ENSVKLSQLIDVLNNRFGTDFNQADQLFFDQ  934
              G I L + +    + + P+   A +R  E+   L+++I+ +N+RF  DF Q+D+++  +
Sbjct  869   KGDIALVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPNDFTQGDRVLVKN  928

Query  935   IVEAAVNTEA--LQQAAQVNSVNKFG-LLFEKIVESLFVERVDQNETIFAR-YMNDNDFK  990
             + E+ +N     L + AQ NS + F+  LF++  + +++++ +Q E+ +++ + N+ DF 
Sbjct  929   MRETLINNTDAKLVNMAQNNSEEMFANSLFQQQFQDFLIDQYNQGEAAYSKMFSNNRDFY  988

Query  991   NVVSEWLLSAVYKRL  1005
             + V + L    Y++L
Sbjct  989   DTVYQLLAKDYYRWL  1003

29) Tbd_2685 in NC_007404


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  611 bits (2309),  Expect = 7e-176, Method: Compositional matrix adjust.
 Identities = 428/1032 (42%), Positives = 674/1032 (66%), Gaps = 62/1032 (6%)

Query  6     QECSFEETIEAHLFANG---YASLPASDYDAALALFPTSVLTFVRATQLKEWAKLEALHG  62
             +E +FE+ IEA L   G      +  ++YDA +AL PT +L FV+ TQ K+W +  ++  
Sbjct  8     KEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYVSIYR  67

Query  63    ANTEATVLKDLTHWLDTHGTLAVLRNGFKCYGRTLRVAYFKPAHGMNPELAAQYAANRVG  122
             +N+E   LK L + +  HG L VLR+G++  G +++V YF+PA ++N E   +Y ANR  
Sbjct  68    TNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEANRFQ  127

Query  123   VIRQLRYSQRNTNELDLVLSINGIPVFTAELKNPMTGQTVTNAIAQYQHDRDHREPLFEF  182
              +RQ++YS++  N +D+VL INGIP+ + ELKN  TGQ V +A  Q+++DRD +E +F+F
Sbjct  128   CVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKELIFQF  187

Query  183   KRRALVHFAVDTEQVFMTTRLAGSATHFLPFNKgldg---gagnppdpagraYRTAYLWE  239
             + R LV FAVD  +V+MTT+LA + T FLPF++G +G    +G    +   +Y T+YLWE
Sbjct  188   NSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLWE  247

Query  240   EVWQRDSLLDIFARFIHLQVEEKRTDDGRKIKKETMIFPRYHQLRAVRELEDAARTEGPG  299
             +V     LLDIF RF++L+            KK  +IFPRYHQL  V+ L   ++ +GPG
Sbjct  248   NVLTSYQLLDIFERFMNLEE-----------KKKLLIFPRYHQLDVVKKLISDTQHHGPG  296

Query  300   HNYLVEHSAGSGKSNTIGWLAHRLASLHNESDHKVFDSVIVITDRRVLDRQLQDTIYQFE  359
              NYL++HSAGSGKSN+I+WLA +LASLH++ D+ ++ SVIV+TDR VLDRQLQ+T+  FE
Sbjct  297   KNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFE  356

Query  360   HRQGVVQKIDED--SRQLAEALTNSVPIIISTLQKFPFVARQLARMAEERREGADGILPT  417
             H  G V+ I+++  S++L  A+ +   III+TLQKFP +  ++   A             
Sbjct  357   HTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTA------------G  404

Query  418   RRCAVIIDEAHSSQSGETATDLKEVLGGH--VLRE--EAARYAVDEGVDNLDELYRSMAK  473
             R  A+++DEAHSSQ+G +A  LK+ L++    L+E  E      D+++D+ D++ +++  
Sbjct  405   RSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLS  464

Query  474   RGRQTNLSFFAFTATPKHKTLAVFGRDEAGKAGQPFHRYTMSQAIEEGFIMDVLKNYTTY  533
             +G++ NLSFFAFTATPK+KT+ +FG  +A+ + +PFH Y+M QAIEEGFI++VL+NY TY
Sbjct  465   QGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTY  524

Query  534   ATYYKLVKASEDDPNVERKQAAKALARFMRLHPYNIAQKTEVMVEHFNAVTRHKVGGKAK  593
              T YK+ K+ E+DP++ + +A +A+A++  LHP  + QK+E+M+E+F +VT+  V G++K
Sbjct  525   NTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGK  584

Query  594   AMVVTGSRLEAVRYKLAFDAYIREKGYSWIKTLVAFSGEVVDDEL----PGKTWTEVGMN  649
             AM+VT+SRL+AVRY   F  YI+EKGY+ +  LVAFSG V DD +    P    T+ G  
Sbjct  585   AMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSG--  642

Query  650   GGIKEGVLPEKFDSSEYQVLLVAEKYQTGYDQPLLHTMYVDKRLAGIQAVQTLSRLNRMH  709
               I+E  L E F+S ++++L+VAEKYQTG+D+PLLHTM+VDKRL G++AVQTLSRLNR  
Sbjct  643   ERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTM  702

Query  710   PLKEDTFVLDFVNDRQEIKEAFKQYHEGAEMGEEADPNQMYAIKAELDASGIYLLEEMQR  769
             P K DTF+LDFVN  +EI EAF+ + E++ + EE + N +Y  ++ L    IY  +++Q 
Sbjct  703   PGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQT  762

Query  770   FIGIYFKPKQRQSPADHQAMNAALDPAVDRFRAVQEEDEEQAELWRGKLSAFRNLYAFLS  829
              + +  ++KQ+Q+      +++ L P + R+  + E+ + +    R  L  F + Y +++
Sbjct  763   VMKLNRQAKQKQNDQLLGRLSSVLRPVISRYSDLPEDVQYD---FRVTLRNFNKWYNYIA  819

Query  830   QVAPYQDSDL--ERLYT--FLRFLSPKLPKRTTGQRY-SFDDEVRLEYYRLQKISEGSIS  884
             Q+    D +L  E ++T  +L+F++ K       + Y  ++D V+LEYY+LQ    G I+
Sbjct  820   QIDRTFDKELLEESIFTGFLLKFIPEK------QRNYIDIEDKVKLEYYKLQEDFKGDIA  873

Query  885   LRDGKAE--LLDGPGEVGSGARHDED-VPLSSLIDVINERFGTDFTDADQLFFDQIIEAA  941
             L +   E   L  P+EV +  R +E+  +L+ +I+ INERF  DFT++D+++  ++ E+ 
Sbjct  874   LVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPNDFTQGDRVLVKNMRETL  933

Query  942   ME--DGSLLEAAAVNPEEKFA-LLFAGLLETLFIERMEQNEDIFAR-FMNERDFQSLVSK  997
             ++  D+ L++ A  N+EE FA  LF   ++ ++I++ +Q E  +++ F N+RDF   V +
Sbjct  934   INNTDAKLVNMAQNNSEEMFANSLFQQQFQDFLIDQYNQGEAAYSKMFSNNRDFYDTVYQ  993

Query  998   WISGKVYARLRS  1009
              ++   Y +LRS
Sbjct  994   LLAKDYYRWLRS  1005

30) Dd1591_4250 in NC_012912


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  609 bits (2300),  Expect = 4e-175, Method: Compositional matrix adjust.
 Identities = 431/1041 (42%), Positives = 680/1041 (66%), Gaps = 70/1041 (6%)

Query  3     QTTEKAFESYVEQMLLA-KGWQSG-YTSG-WDRERALFPQAITDFIATTQPQLWKAMRNQ  59
             +  E  FE  +E  L+   GW+S  +     D + AL P  + +F+  TQP+ WK   + 
Sbjct  6     KNKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYVSI  65

Query  60    HGEQLEAMLLATLLKELAIKGSLHVLRHGFKFYGKTFRLAYFKPAHGLNEEVLVHYRANQ  119
                + E  +L  L  E++  G LHVLR G++  G +F++ YF+PA +LN E + +Y AN+
Sbjct  66    YRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEANR  125

Query  120   LTVTRQVPCHPGDHSTVDLVFAINGLPVATCELKNPWTGQSWRNAVRQYKEDRNPRAPLF  179
             +   RQ       ++T+D+V+ ING+P+ + ELKN  TGQ+  +A  Q+ +DR+P+  +F
Sbjct  126   FQCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKELIF  185

Query  180   EFKQRALVHFAADPDEVHMTTRLAGGKTFFLPFNRGSHPGEVQCGAGNPQHPSGHRTGYF  239
             +F+ R LV FA D  +V MTT+LA G+T+FLPF++GS+      GAGNP +PSG  T+Y+
Sbjct  186   QFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYL  245

Query  240   WEEVLERESFLDILGHFVFIekkeekvddgkggSRMASKEAMIFPRYHQLDATRKLIAAA  299
             WE+VL    +LDI+ +F+ +E                 K  +IFPRYHQLD  +KLI+ +
Sbjct  246   WENVLTSYQLLDIFERFMNLE---------------EKKKLLIFPRYHQLDVVKKLISDT  290

Query  300   RAEGPGQNYLIQHSAGSGKTNSISWLSHRLASLHNSDDHKVFDCVIVITDRQVLDRQLQD  359
             + +GPG+NYLIQHSAGSGK+NSI+WL+ +LASLH+++D+ ++  VIV+TDR VLDRQLQ+
Sbjct  291   QHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQN  350

Query  360   AIYQIEHAQGVVKAIDQD--SKQLAEALIDGTKIVVTTLQKFPFVLRGLLHAAGAESVDD  417
             ++  +EH+ G V +I+++  S++L  A+ D  KI++TTLQKFP +   + ++AG      
Sbjct  351   TLMSFEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAG------  404

Query  418   PDEATKAKAKIWEAEIGKRRYAVIVDEAHSSQTGETARELKAILGAKtgg----------  467
                               R +A++VDEAHSSQTG +A+ LK  L+ K ++          
Sbjct  405   ------------------RSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEES  446

Query  468   -ddeetdwedgLNQVIASRGRQPNLSFFAYTATPKGKTLELFGRVGSSGKPEPFHLYSMR  526
              +D+  D +D + Q + S+G++ NLSFFA+TATPK KT+E+FG   + G  +PFH+YSMR
Sbjct  447   VEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFHIYSMR  506

Query  527   QAIEERFILDVLQNYTTYKTYFKLVKAVEDDPNlpkkkaaralakflvlHPTNIAQKIEV  586
             QAIEE FIL+VLQNY TY+T +K+ K++E+DP+LPK  A RA+AK+  LHP  + QK E+
Sbjct  507   QAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEI  566

Query  587   IIEHFRSHVRTHLGGRAKAMVVTSSRLQAVKYMEAFQRYIDEHGYDDIRSLVAFSGTVRD  646
             +IE+FRS  +  + GR+KAM+VT+SRL+AV+YM+ F++YI E GY D+  LVAFSGTV  
Sbjct  567   MIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTV--  624

Query  647   PETGLEYTEPGMNTDVVSGKPISEKQLPERFASPDYQVLLVANKYQTGFDQPLLMAMYVD  706
              + G+EYTEP MN    SG  I E+QL E F S D+++L+VA+KYQTGFD+PLL +M+VD
Sbjct  625   EDDGIEYTEPKMNL-THSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFVD  683

Query  707   KRLDGVQAVQTLSRLNRMVPGKETPFVLDFVNEAEDIYRAFKPYYDTTSLQESSDPALLE  766
             KRL GV+AVQTLSRLNR +PGK   F+LDFVN AE+IY AF+P+Y++TSL+E  +  L+ 
Sbjct  684   KRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININLIY  743

Query  767   QLKHELDAFQVYHWNEVEAFARIFYRVPGKHNPADH--AHLQRHLQPAVDRFKAMEDEEQ  824
             + +  L  F++Y+ +++++  ++     +K++  D+  ++L   L+P + R+  + ++ Q
Sbjct  744   DTQSKLRKFHIYNDDDIQTVMKL--NRQAKQKQNDQLLGRLSSVLRPVISRYSDLPEDVQ  801

Query  825   RGEFRDKLSGYVKVYSFLSQIIPYGDPDLEMLYSFGRFLLPHLPLERDTSAVKLGDEVGL  884
               +FR  L  + K Y++++QI    D +L     F  FLL  +P E++ + + + D V L
Sbjct  802   Y-DFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFTGFLLKFIP-EKQRNYIDIEDKVKL  859

Query  885   QYYRLQRVFSGAIELREGEGDYG-VKSPTEVGTS-KAKEEKAPLSEIIGVLNDRFGTNFT  942
             +YY+LQ  F G I L + + + G +  P+EV ++ ++ EE  +L+EII  +N+RF  +FT
Sbjct  860   EYYKLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPNDFT  919

Query  943   EEDRLFFEQIREKAANSPE--VIRLRQANPFDKFQLGL-RQMLEDLMIQRMSENDKIVSR  999
             + DR++  ++RE   N+ +  ++ + Q N+ + F  +L +Q ++D++I++ ++ +   S+
Sbjct  920   QGDRVLVKNMRETLINNTDAKLVNMAQNNSEEMFANSLFQQQFQDFLIDQYNQGEAAYSK  979

Query  1000  -YMDDKAFEDAAFAVLSKVIY  1019
              + +++ F D+ + +L+K  Y
Sbjct  980   MFSNNRDFYDTVYQLLAKDYY  1000

31) Metme_4222 in NC_015572


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  609 bits (2299),  Expect = 5e-175, Method: Compositional matrix adjust.
 Identities = 426/1043 (41%), Positives = 689/1043 (67%), Gaps = 69/1043 (6%)

Query  1     MAQTTEKAFESYVEQMLLA-KGWQASSVKE--WDKELALFPTQILDFIAATQTPLWDSMR  57
             + +  E  FE  +E  L+   GW++   ++   D ++AL PT +L+F+  TQ   W    
Sbjct  4     VIKNKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYV  63

Query  58    SQHGANLPAMLIKELVKELAIKGALHVLRHGFKFYGKTFRLAYFKPAHGLNAEVLAHYQH  117
             S   +N    ++K L  E++  G LHVLR G++  G +F++ YF+PA +LN+E + +Y+ 
Sbjct  64    SIYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEA  123

Query  118   NRLTVTRQVPCHPGEHSTLDMLFAVNGLPVASCELKNPWTGQNWRHAINQYRNDRNPRAP  177
             NR+   RQ       ++T+DM++ +NG+P+ + ELKN  TGQN  HA  Q+ +DR+P+  
Sbjct  124   NRFQCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKEL  183

Query  178   LFEFKQRALVHFAADPDEVHMTTRLAGKKTFFLPFNRGSHPGEVVCGAGNPQHPSGYRSG  237
             +F+F+ R LV FA D  +V MTT+LA  +T+FLPF++GS+    V GAGNP +PSGY ++
Sbjct  184   IFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTS  243

Query  238   YFWEEVLEREQFLDILGNFIFIERKEEKVEDGKGGSRLLQKEAVIFPRYHQLDATRRLVN  297
             Y+WE+VL   Q+LDI+  F+ +E K           +LL     IFPRYHQLD  ++L++
Sbjct  244   YLWENVLTSYQLLDIFERFMNLEEK----------KKLL-----IFPRYHQLDVVKKLIS  288

Query  298   AAQLEGPGQNYLIQHSAGSGKTNSISWLSHRLASLHNADEQKVFDCVIVITDRQVLDRQL  357
              +Q +GPG+NYLIQHSAGSGK+NSI+WL+ +LASLH+ ++Q ++  VIV+TDR VLDRQL
Sbjct  289   DTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQL  348

Query  358   QDAIYQIEHAQGVVKAIDQD--SKQLAAALIDGTKIVITTLQKFPFVLRGLLHAAGADNI  415
             Q+++  +EH+ G V +I+++  S++L +A+ D  KI+ITTLQKFP +   + ++AG    
Sbjct  349   QNTLMSFEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAG----  404

Query  416   DAADEMAKTQAKAWEMEIGKRCYAVIVDEAHSSQTGETARELKSILGANAA---------  466
                                 R +A++VDEAHSSQTG +A+ LK  L+ + A         
Sbjct  405   --------------------RSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFE  444

Query  467   -NGEDEETDFEDRLNQVMASRGRQPNISFFAYTATPKGKTLELFGRVGHTGKPEPFHLYS  525
              + ED+  D +D++ Q + S+G++ N+SFFA+TATPK KT+E+FG     G  +PFH+YS
Sbjct  445   ESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFHIYS  504

Query  526   MRQAIEEGFILDVLQNYTTYKTYFKLVKAMEDDPSlpkkkaaralakflvlHPTNISQKI  585
             MRQAIEEGFIL+VLQNY TY+T +K+ K++E+DP LPK  A RA+AK+  LHP  + QK 
Sbjct  505   MRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKA  564

Query  586   EIIVEHFRNHVKHHLGGQAKAMVVTSTRLQAVKYVQAFQAYIEQHGYRDVQPLVAFSGTV  645
             EI++E+FR+  +  + G++KAM+VT++RL+AV+Y+Q F+ YI + GY D++ LVAFSGTV
Sbjct  565   EIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTV  624

Query  646   LDPDSGQEYTEPGMNIDSVTGKAISEKQLPERFNSPDYQVLLVANKYQTGFDQPKLMAMY  705
                D G EYTEP MN+ + +G  I E+QL E F+S D+++L+VA+KYQTGFD+P L +M+
Sbjct  625   --EDDGIEYTEPKMNL-THSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMF  681

Query  706   VDKRLDGVQAVQTLSRLNRMLPGKEAPFVLDFVNEAEDIYRAFKPYYDATSLQETSDPAL  765
             VDKRL GV+AVQTLSRLNR +PGK   F+LDFVN AE+IY AF+P+Y+ATSL+E  +  L
Sbjct  682   VDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININL  741

Query  766   LEQVKHDLDSLQVYYWNEVEAFARIFYRSPNKQNPADHAHLQRHLQPAVDRFKAISDDEQ  825
             + + +  L  +++Y  +++++  ++  ++ +KQN    ++L   L+P + R+  +++D Q
Sbjct  742   IYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLLGRLSSVLRPVISRYSDLPEDVQ  801

Query  826   RSVFRDKLSGYVNVYAFLSQIMPYADPDL--EMLYSFGrlllphlpldrdNSNVKLGDEV  883
                FR  L  + + Y +++QI    D +L  E +++    +L  +  +++ + + + D V
Sbjct  802   YD-FRVTLRNFNKWYNYIAQIDRTFDKELLEESIFT---GFLLKFIPEKQRNYIDIEDKV  857

Query  884   DLHYYRLQRVFSGAIDLADEQGEYT-VKSPTDV-GTGKAKDEKAPLSEIIELLNNRFGTN  941
              L+YY+LQ  F G I L +E+ E   +  P++V +T ++ +E  +L+EII+ +N+RF  +
Sbjct  858   KLEYYKLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPND  917

Query  942   FTEEDRLFFEQIKEKATNSPE--VIQLRQANPFDKFQLGV-RQMLEDLMIQRMNENDKIV  998
             FT+ DR++  +++E   N+ +  ++++ Q N+ + F  ++ +Q ++D++I++ N+ +   
Sbjct  918   FTQGDRVLVKNMRETLINNTDAKLVNMAQNNSEEMFANSLFQQQFQDFLIDQYNQGEAAY  977

Query  999   TR-YMDDRAFEDAAFAVLSKVIF  1020
             ++ + ++R F D+ + +L+K  +
Sbjct  978   SKMFSNNRDFYDTVYQLLAKDYY  1000

32) Mic7113_4818 in NC_019738


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  609 bits (2299),  Expect = 5e-175, Method: Compositional matrix adjust.
 Identities = 420/1044 (41%), Positives = 678/1044 (65%), Gaps = 76/1044 (7%)

Query  6     SASRHSEAAFESVIEEHLLAHG---YVRV-NSQFDRTRAIFPDEAINFIRTTQPKEWAKL  61
             S  ++ E  FE  IE  L+  G    VR  ++++D   A+ P   ++F++ TQPK+W + 
Sbjct  3     SVIKNKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRY  62

Query  62    EALHGENTATQILTDLCKWMDAYGSLHTLRHGFKCYGRTLRIAYFKAAHGLNPGLEARYA  121
              ++   N+  ++L  L   +   G LH LR G++  G ++++ YF++A +LN      Y 
Sbjct  63    VSIYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYE  122

Query  122   TNCVGITRQLHYSDRDPAKSLDVTLSLNGIPIATLELKNPLTGQTFENAKQQYRKDRDPR  181
             +N     RQ++YS++   +++D+ L +NGIP+ +LELKN  TGQ  E+A+ Q+ +DRDP+
Sbjct  123   ANRFQCVRQFQYSNKYR-NTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPK  181

Query  182   EPVFEFKRRTLVHFAVDTEEVWMTTRLASDATHFLPFNQGCEG-----GAGNPSDPNGRT  236
             E +F+F+ R LV FAVD  +V MTT+LA + T FLPF+QG +G     GAGNPS+P+G  
Sbjct  182   ELIFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSG--  239

Query  237   YRTAYLWEEVLQRDSLLDLLARFLHLQIEEKHDDDGRKFKKESMIFPRYHQLQAVRRLTD  296
             Y T+YLWE+VL    LLD++ RF++L+            KK  +IFPRYHQL+ V++L  
Sbjct  240   YPTSYLWENVLTSYQLLDIFERFMNLEE-----------KKKLLIFPRYHQLDVVKKLIS  288

Query  297   AARREGVGHNYLIEHSAGSGKSNTIGWLTHRLASLHDDQDRRVFDSVIVITDRRVLDQQL  356
              ++++G G NYLI+HSAGSGKSN+I+WL+ +LASLH ++D+ ++ SVIV+TDR VLD+QL
Sbjct  289   DTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQL  348

Query  357   QDTIYQFEHRQGVVQKIDED--SRQLAQALESAVPIIITTLQKFPFVSRQLLKLTEERNE  414
             Q+T+  FEH  G V+ I+++  S++L  A++    IIITTLQKFP +  ++         
Sbjct  349   QNTLMSFEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEI---------  399

Query  415   QGRGVLPTRRCAVIIDEAHSSQSGETATELKGILGGED--LQE--EARKRAQEEGLENQE  470
                +  + R  A+++DEAHSSQ+G +A  LK  L++ +  L+E  E     ++++L++Q+
Sbjct  400   ---DNTAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQD  456

Query  471   ELFRSMAKRARQANLSFFAFTATPKHKTLKVFSDNG-----KPFHRYTMRQAIEEGFIMD  525
             ++ +++  ++++ NLSFFAFTATPK+KT+ +F+ +       PFH Y+MRQAIEEGFI++
Sbjct  457   QIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILN  516

Query  526   VLHNYTTYKSYYQLIKACKNDPNVERKNAARALARFMRLHPHNIAQKTEVMVEHFNTFSR  585
             VL+NY TY++ Y++ K+  +DP++ + +A RA+A++  LHP  + QK+E+M+E+F + ++
Sbjct  517   VLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQ  576

Query  586   HKIGGRAKAMVVTGSRLEAVRYKQSFDKYIKEKGYP-IKTLVAFSGVVTDDKIKDKTYSE  644
               + GR+KAM+VT+SRL+AVRY Q F KYIKEKGY  +  LVAFSG V DD I    Y+E
Sbjct  577   KAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVEDDGIE---YTE  633

Query  645   EAMN-----QGIRERELPERFATNEYQVLLVAEKYQTGFDQPLLHTMYVDRRLAGIQAVQ  699
               MN     + I+E +L E F ++++++L+VAEKYQTGFD+PLLHTM+VD+RL G++AVQ
Sbjct  634   PKMNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQ  693

Query  700   TLSRLNRTHPQKEDTFVLDFINDREEIREAFQQFYEGAEIGEEAKPEQLYQLQAELDAQG  759
             TLSRLNRT P K DTF+LDF+N  EEI EAFQ FYE++ + EE + + +Y+ Q+ L    
Sbjct  694   TLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFH  753

Query  760   IYLQEEIEYFCQIYFKPKQRQSVSDHQAMNAALDPAVDRFRSLYADNPEEAE-VWRRKVA  818
             IY +++I+   ++  ++KQ+Q+      +++ L P + R+  L    PE+ +   R  + 
Sbjct  754   IYNDDDIQTVMKLNRQAKQKQNDQLLGRLSSVLRPVISRYSDL----PEDVQYDFRVTLR  809

Query  819   AFRNLYSFLSQIIPYQDSDL--ERLYI-FLRHLSPKLPRHKNEAQY-DFDSDIQLEYYRL  874
              F + Y++++QI    D +L  E ++  FL  + P   R+     Y D++  ++LEYY+L
Sbjct  810   NFNKWYNYIAQIDRTFDKELLEESIFTGFLLKFIPEKQRN-----YIDIEDKVKLEYYKL  864

Query  875   QKISEGSIVLRKGYSQ--PLDGPKAVGTGVVRESP-VKLSQLIDTINSRFGTDFNQADQL  931
             Q    G I L +   +   L  P  V + V  E     L+++I+ IN RF  DF Q+D++
Sbjct  865   QEDFKGDIALVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPNDFTQGDRV  924

Query  932   FFDQIVEAAANSEE--LQQAAQVNSADKFA-LLFNQMLESLFVERVDQNETIFAR-YMND  987
             +  ++ E+  N+ +  L + AQ NS + FA  LF+Q ++ +++++ +Q E+ +++ + N+
Sbjct  925   LVKNMRETLINNTDAKLVNMAQNNSEEMFANSLFQQQFQDFLIDQYNQGEAAYSKMFSNN  984

Query  988   RDFQKVVSDWLVSEVYQRLIGNKP  1011
             RDF   V + L  + Y++L ++K+
Sbjct  985   RDFYDTVYQLLAKDYYRWLRSQKA  1008

33) DGI_1301 in NC_022444


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  608 bits (2296),  Expect = 8e-175, Method: Compositional matrix adjust.
 Identities = 419/1045 (41%), Positives = 671/1045 (65%), Gaps = 67/1045 (6%)

Query  4     KTKEADFEDGIEYTLLQ-NGW--TRLAASGYDQERALFPAEVLRFLQVTQGDIWSQMQal  60
             K KE +FE++IE +L+Q  GW   R+  + YD + AL P+ +L F++ TQ   W +  ++
Sbjct  6     KNKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYVSI  65

Query  61    hgealeekllaalvrelDLKGMLAVLRHGFKFHGKVFRMAFFRPAHGLNPEAVALYAHNT  120
                  E+K+L  L  E+   G+L VLR G++ +G  F++ +F+PA +LN E +  Y  N 
Sbjct  66    YRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEANR  125

Query  121   LAVSRQIPCQPGARDTIDLVFSCNGLPVATCELKNPPTGQTWRHAIAQYKQDRDPRAPLF  180
             +   RQ+      R+TID+V+  NG+P+ + ELKN  TGQ   HA  Q+ QDRDP+  +F
Sbjct  126   FQCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKELIF  185

Query  181   AFKKRALVHFAADTEEVYMTTRLSGDKTYFLPFNRGSAPGAIACGAGNPPHPDGARTAYL  240
              F+ R LV FA D  +V MTT+L+ ++TYFLPF++GS   +   GAGNP++P G  T+YL
Sbjct  186   QFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYL  245

Query  241   WQDVLARDSFLDILGSYMFLQREEKRIQDGEGGKKIIIVEKMIFPRFHQLDAVRALVQGA  300
             W++VL+   +LDI+  +M L+ E K++              +IFPR+HQLD V+ L+ ++
Sbjct  246   WENVLTSYQLLDIFERFMNLE-EKKKL--------------LIFPRYHQLDVVKKLISDT  290

Query  301   RREGVGRQYLIQHSAGSGKTNSISWLSHRLASLHDEQDGKVFDCVLVITDRQILDRQLQD  360
             +++G G++YLIQHSAGSGK+NSI+WL+ +LASLH ++D  ++  V+V+TDR +LDRQLQ+
Sbjct  291   QHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQN  350

Query  361   AIYQIEHRQGVVKPIDQD--SKQLAAALVDGTPIVITTLQKFPFVLKGLLRQAGAENLDS  418
             ++  +EH  G V  I+++  S++L +A+ D   I+ITTLQKFP +   +   AG      
Sbjct  351   TLMSFEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRS----  406

Query  419   PDaearaqakaweaaiatrryaiiiDEAHSSQTGDTARELKAILG---AGLQD--ALPAN  473
                                 +AI++DEAHSSQTG +A+ LK  L+   A+L++   +  +
Sbjct  407   --------------------FAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEES  446

Query  474   PEAPGDDFEDALNAVMESRGRQKNLSFFAFTATPKGKTIQLFGRPGASGKPVPFHTYSMR  533
              E  + D +D +   + S+G++ NLSFFAFTATPK KTI++FG   A G   PFH YSMR
Sbjct  447   VEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFHIYSMR  506

Query  534   QAIEEGFILDVLKHYTTYKTYFKLVKAVEDDPKYPKKKATRALGKFMSLHPHNIDQKTEV  593
             QAIEEGFIL+VL++Y TY+T +K+ K++E+DP  PK  A RA++K+ SLHP  + QK+E+
Sbjct  507   QAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEI  566

Query  594   MVEHFRRHVRQRIGGQAKAMVVSSSRLHAVKYMLAFQEYIAANGYTDIRPLVAFSGTVKD  653
             M+E+FR   ++ + G++KAM+V++SRLHAV+YM  F+ YI  +GYTD+  LVAFSGTV  
Sbjct  567   MIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTV--  624

Query  654   PDTGQEFTEPGMNTDVTTGRPIRESQLPETFDSADYQVLLVANKYQTGFDQPLLHTMYVD  713
              D G E+TEP MN   +  R I+E+QL E+F+S D+++L+VA+KYQTGFD+PLLHTM+VD
Sbjct  625   EDDGIEYTEPKMNLTHSGER-IQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFVD  683

Query  714   KRLSDVQAVQTLSRLNRMTPGKDAPFVLDFVNEPDEIYRAFKPYFDSTSLQEEADPQQLE  773
             KRL +V+AVQTLSRLNR  PGK   F+LDFVN ++EIY AF+P++++TSL+EE + + + 
Sbjct  684   KRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININLIY  743

Query  774   SLKHTLDQAQVYHWSEVEAFARIFYKPRERQSPTDHGHMRLHLAPAVDRFKALGLQEGGE  833
               +  L + ++Y+  ++++  ++  +++++Q+    G++   L P + R+  L      E
Sbjct  744   DTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLLGRLSSVLRPVISRYSDL-----PE  798

Query  834   EAQALFRDTLSSYTRLYTFLSQIMPYVDPELEKLYSYGRMLLPELPA-GKGFVLISPEDK  892
             + Q  FR TL ++ + Y +++QI    D EL     +   LL  +P   + +  I  EDK
Sbjct  799   DVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFTGFLLKFIPEKQRNY--IDIEDK  856

Query  893   VDLQYYRLQRIYSGAIDLRPDEAEG--VKSPTDV-GTGKAKDEESPLSGIIDVLNERFQT  949
             V L+YY+LQ  + G I L  ++ E   +  P++V +T ++ +E  +L+ II+ +NERF  
Sbjct  857   VKLEYYKLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPN  916

Query  950   DFSEGDRLFFEQIKAVAVE--DEAVIRTAAANTLDKFQLGI-KKIIESIMIQCMAQNDRI  1006
             DF++GDR++  +++   ++  D  ++  A  N+ + F  ++ ++ ++ ++I+   Q +  
Sbjct  917   DFTQGDRVLVKNMRETLINNTDAKLVNMAQNNSEEMFANSLFQQQFQDFLIDQYNQGEAA  976

Query  1007  VSR-YMDDPEFHSVIFGRLTEEIHR  1030
              S+ + ++ +F   ++  L+ +  R
Sbjct  977   YSKMFSNNRDFYDTVYQLLAKDYYR  1001

34) Oscil6304_1096 in NC_019693


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  601 bits (2271),  Expect = 7e-173, Method: Compositional matrix adjust.
 Identities = 425/1040 (41%), Positives = 676/1040 (65%), Gaps = 67/1040 (6%)

Query  7     VFPQSETAFEQVIEDSLLKQG---YVK-PQTPFNKNLAIFPDIALNFIRQTQPKAWAKLE  62
             V+ + E  FEQ IE SL++ G    V+  +T ++ N+A+ P + L+F++QTQPK W +  
Sbjct  4     VIKNKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYV  63

Query  63    ALHGENTGNQIITDLCKWMDTYGSLHTLRHGFKCYGRTLRIAYFKAAHSLNSDLESCYKA  122
             ++   N+ ++++  L   +   G LH LR G++  G ++++ YF++A SLN++    Y A
Sbjct  64    SIYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEA  123

Query  123   NQLGITRQLQYSTRHRNELDITLSLNGIPIVTIELKNPLTGQTVEHGKQQYRQDRDPHEI  182
             N++   RQ+QYS + RN +D+ L +NGIP+V++ELKN  TGQ VEH++ Q+ QDRDP E+
Sbjct  124   NRFQCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKEL  183

Query  183   IFEFKRRTLVHFTVDTEEVWMTTRLAGKATHFLPFNQGDH-----NGAGNPRDPQGRTYR  237
             IF+F+ R LV F+VD  +V MTT+LA   T FLPF+QG +      GAGNP +P G  Y 
Sbjct  184   IFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSG--YP  241

Query  238   TAYLWENILQPDSlldllaqflhlQIEQKYDDRGRKYQKETMIFPRFHQLQTVRKLIAAT  297
             T+YLWEN+L +         +  L+I +++ +   K  K  +IFPR+HQL+ V+KLI+ T
Sbjct  242   TSYLWENVLTS---------YQLLDIFERFMNLEEK--KKLLIFPRYHQLDVVKKLISDT  290

Query  298   QEEGVGHNYLIDHSAGSGKSNTIAWLTHRLVSLHNTENQRVFESVIVISDRRILDQQLQD  357
             Q++G G NYLI+HSAGSGKSN+IAWL+ +L SLH+ E+Q ++ SVIV++DR +LD+QLQ+
Sbjct  291   QHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQN  350

Query  358   TIYQFEHRQGVIQKI--DKDSKQLAEALESAVPIIVTTLQKFPFVTRQLLKLAEARNEQG  415
             T+  FEH  G ++ I  +K S++L  A++    II+TTLQKFP +  ++        ++ 
Sbjct  351   TLMSFEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEI--------DNT  402

Query  416   SGRLPTRRCAVIIDEAHSSQSGDTATELKGVLGGETLHQKA----REMAQEEGLEHLEEM  471
             +G    R  A+++DEAHSSQ+G +A  LK  L++     K      E  ++++L++ +++
Sbjct  403   AG----RSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQI  458

Query  472   FLSMAKRSLQDNLSFFAFTATPKHKTLKFFG-REGE----PFHRYTMRQAIEEGFIMDVF  526
               ++  ++ +DNLSFFAFTATPK+KT+  FG ++++    PFH Y+MRQAIEEGFI++V+
Sbjct  459   VQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVL  518

Query  527   KNYTIYTAYFKLLKDSGNDPHVQRKQAAKSLTHFMRLHPHNIAQKTQIMVEHFNNFTRHK  586
             +NY  Y + +K+ K   +DP++ + +A ++++ +  LHP  + QK++IM+E+F + T+  
Sbjct  519   QNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKA  578

Query  587   IGGKAKAMVVTGSRLEAVRYKQSFDKYIKEKGY-DIKSLVAFSGIVNDDKIPDKTYTEEE  645
             + G++KAM+VT+SRL+AVRY Q F KYIKEKGY D+  LVAFSG V+DD I    YTE  
Sbjct  579   VQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVEDDGI---EYTEPK  635

Query  646   MN-----QGIREKELTEKFAGDDYQVLLVAEKYQTGFDQPLLHTMYVDKRLSGIKAVQTL  700
             MN     + I+E++L E F ++D+++L+VAEKYQTGFD+PLLHTM+VDKRL G+KAVQTL
Sbjct  636   MNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTL  695

Query  701   SRLNRTHPHKEDTFILDFVNKREEIQEAFQQFYEGAELGKEAEPGQLYQLKSQLDASGIY  760
             SRLNRT P K DTFILDFVN  EEI EAFQ FYE++ L  E +   +Y+ +S+L    IY
Sbjct  696   SRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIY  755

Query  761   LSEEVNRFCTIYFKPKQRQNPSDHQGMNAALDPAVDRFRALYEQDVEEAELWRRKLTAFR  820
               ++++    +  ++KQ+QN      +++ L P + R+  L  +DV+     R  L  F 
Sbjct  756   NDDDIQTVMKLNRQAKQKQNDQLLGRLSSVLRPVISRYSDL-PEDVQYD--FRVTLRNFN  812

Query  821   NLYSFLSQIIPYQDSDLEQVYIFLRHLSTKLFRPSNQGQY-DFDSEIKLEYYRLQKISEG  879
             + Y++++QI    D +L +  IF   L    F P +Q +Y D++  +KLEYY+LQ    G
Sbjct  813   KWYNYIAQIDRTFDKELLEESIFTGFLLK--FIPEKQRNYIDIEDKVKLEYYKLQEDFKG  870

Query  880   SIHLKKGETIPQD-GSPAVGTAILR--ENSLKLSQLIDVLNNRFGTDFNQADQLFFDQIV  936
              I L + +    + + P+   A +R  E+   L+++I+ +N+RF  DF Q+D+++  ++ 
Sbjct  871   DIALVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPNDFTQGDRVLVKNMR  930

Query  937   EAAVNTEA--LQQAAQVNSVNKFG-LLFDKIVESLFVERVDQNENIFAR-YMNDNDFKNV  992
             E+ +N     L + AQ NS + F+  LF++  + +++++ +Q E  +++ + N+ DF + 
Sbjct  931   ETLINNTDAKLVNMAQNNSEEMFANSLFQQQFQDFLIDQYNQGEAAYSKMFSNNRDFYDT  990

Query  993   VSGWLLSEVYKRLSDHHNSE  1012
             V   L  + Y++L  +   +
Sbjct  991   VYQLLAKDYYRWLRSQKADN  1010

35) Hprae_2037 in NC_017455


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  593 bits (2238),  Expect = 3e-170, Method: Compositional matrix adjust.
 Identities = 413/997 (42%), Positives = 670/997 (68%), Gaps = 59/997 (5%)

Query  34    NQNYDKYHALDTEILFEFLETTQEKTMQELKNIYGPEYKQKIVKRLNAELARRSMIDVIK  93
             + +YD   ALD  +L+EF+  TQ K  +   +IY  +  QK++KRLN E++ +++++V++
Sbjct  33    DTHYDANIALDPTVLLEFVKQTQPKNWKRYVSIYRTNAEQKFLKRLNEEITNHGILHVLR  92

Query  94    HGIKDYGKKLDLAYFKPPTDFNAKLNKLYQQNIFSVIDELNYQDNKR--LDIVLFLNGLP  151
              GI+D G  + + YF+P++ +N+   K Y+ N F  + +++Y ++ R  +D+VL +NG+P
Sbjct  93    KGIRDRGVSFKVVYFQPASSLNTENIKNYEANRFQCVRQFQYSNKYRNTIDMVLMINGIP  152

Query  152   IITMELKNQDTSQGYKDAIKQYKTERSPNEKIFRFKQRSIVNFAVDKAEVYMTTELKGKD  211
             ++++ELKNQ T+Q   +A  Q+  +R P+E IF+F+ R +V FAVD  +V MTT L   +
Sbjct  153   LVALELKNQYTGQNVEHARLQFEQDRDPKELIFQFNSRFLVYFAVDHFNVLMTTKLAKGN  212

Query  212   TFFLPFNkgqgkgk-akragNPTVAGKIKTHYLWEDIFKKDQLLEILQKFVFIDQEEDID  270
             T+FLPF++G         AGNP+ ++   T YLWE+++   QLL+I+++F+      +++
Sbjct  213   TYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLWENVLTSYQLLDIFERFM------NLE  266

Query  271   QQGNLKQDEKIIFPRYHQLDVVSKILGDVKEKKAGSKYLIQHSAGSGKTYSITWLAHRLS  330
             ++ +L     +IFPRYHQLDVV K+++D ++  +G +YLIQHSAGSGK+ SI+WLA +L+
Sbjct  267   EKKKL-----LIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLA  321

Query  331   SLHDRENNPIFSSVIVVTDRVSLDQQLQETIYQIDHKLGVVAPI--KKDSHQLAAELNAG  388
             SLH  E++PI+SSVIVVTDR  LD+QLQ+T+  ++H +G V  I  +K S++L + +N  
Sbjct  322   SLHSNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETIGDNKTSQDLKTAINDQ  381

Query  389   TKIIISTIQKFPFILDKVSDTKVKNFAIIIDEAHSSTSGKNIlalkeslsleeaaelDRQ  448
              KIII+T+QKFP I D + +T  ++FAI++DEAHSS +G +   LK++L+  EA+  + Q
Sbjct  382   KKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQ  441

Query  449   AEMNSDDVEDKINKELKRVQSL------DSLSFFGFTATPKPATLELFGSTNQAGKKEAF  502
              E +    ++ ++ + + VQ+L      D+LSFF+FTATPK  T+E+FG+ +  G  ++F
Sbjct  442   -EFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPF  500

Query  503   HLYSMRQAIEEGFILDVLENYMTYKTYYQVNKKIEADPEFEKSRTSKEIARFVSLHPHNI  562
             H+YSMRQAIEEGFIL+VL+NYMTY+T Y++ K IE DPE+ K+ + + IA++ SLHP  +
Sbjct  501   HIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVL  560

Query  563   SQKTEIMIEHFRDKTMHKIGGEAKAMLVTSSRLHAVRYKNAFDKYIRDKGYKNLKSLVAF  622
              QK+EIMIE+FR  T   + G +KAM+VT+SRLHAVRY + F KYI++KGY ++  LVAF
Sbjct  561   RQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAF  620

Query  623   SGTVKDDGFEYTEPKLN-----NGIPESETAKEFDKDEYQILLVANKYQTGFDQPKLHTM  677
             SGTV DDG+EYTEPK+N     + I E++    F+ +++++L+VA+KYQTGFD+P LHTM
Sbjct  621   SGTVEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTM  680

Query  678   FVDKRLQGVNAVQTLSRLNRTYKGIKEDTFVLDFVNEADDIKNAFEPYYDLTKLDSDNID  737
             FVDKRL+GV+AVQTLSRLNRT  G K DTF+LDFVN A++I +AF+P+Y+ T L  ++I+
Sbjct  681   FVDKRLRGVKAVQTLSRLNRTMPG-KTDTFILDFVNTAEEIYEAFQPFYEATSL-KEEIN  738

Query  738   PNQMYT---------LY--DEIMDSMLIDKADIDAFAHCYYENDSTEEIIAAGDNALSHS  786
              N +Y          +Y  D+I   M +++            +   +++++   + L   
Sbjct  739   INLIYDTQSKLRKFHIYNDDDIQTVMKLNRQA---------KQKQNDQLLGRLSSVLRPV  789

Query  787   TARIENLSKEDKLEFRSQMKRFINLYNLVLQVHPIKDIELHKLNIYLKFLLKRIDVETPN  846
              +R  +L+ + + +FR  ++ F + YN + Q++   D EL   +I+  FLLK I     N
Sbjct  790   ISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFTGFLLKFIPEKQRN  849

Query  847   NVDISDKVVLEYYQLENKGQQSIGLIGEK----ELTGPA-LGSGSYQEEEKEHLSVIIER  901
              +DI DKV LEYY+L++  +  I+L+ E     +L+ P+ + +    EEE + L+ II++
Sbjct  850   YIDIEDKVKLEYYKLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHK  909

Query  902   LNEKFQTNFSDSAKVAIDQMknkleknnnl--kkWAQANSFEDFKIPV-QKKFEDTVVES  958
             +NE+F  +F+++ +V + +M++ L +N +    + AQ NS E F  ++ Q++F+D +++ 
Sbjct  910   INERFPNDFTQGDRVLVKNMRETLINNTDAKLVNMAQNNSEEMFANSLFQQQFQDFLIDQ  969

Query  959   YNENTEFYGKVL-NDKDFKEKLMDLIMIDLYQSLRAE  994
             YN+    Y+K++ N++DF + + +L+  D Y+ LR++
Sbjct  970   YNQGEAAYSKMFSNNRDFYDTVYQLLAKDYYRWLRSQ  1006

36) Halhy_2181 in NC_015510


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  592 bits (2237),  Expect = 3e-170, Method: Compositional matrix adjust.
 Identities = 422/1038 (41%), Positives = 673/1038 (65%), Gaps = 72/1038 (6%)

Query  3     NTNESAFETVIETHLLE-NGYKPV--NKNSYDKTRVIFPQKVLDFIQTTQPREWAKLEAL  59
             + +E  FE  IE+ L++  G  +V  +   YD    + P  +L+F++ TQP++W +  ++
Sbjct  6     KNKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYVSI  65

Query  60    HAEHTSEQVLGDLCKWMDTYGALTTLRHGFKCYGRTLYIAYFKAAHTMNPELEANYAANC  119
                ++ ++ L  L   +   G L  LR G++  G ++ + YF++A ++N E   NY AN 
Sbjct  66    YRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEANR  125

Query  120   LGITRQLQYSARGNQSLDLTISLNGVPIATLEIKNPLTNQTVEHAKKQYKQDRDPREILF  179
             +   RQ+QYS +  +++D+ + +NG+P+ +LE+KN  T Q VEHA+ Q+ QDRDP+E++F
Sbjct  126   FQCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKELIF  185

Query  180   EFKRRALVHFAVDTELVFMATRLAGNATYFLPFNK-----GWEGGAGNPPDRNGRTYRTA  234
             +F+ R LV FAVD   V+M+T+LA   TYFLPF++     G+ GGAGNP++ +G  Y T+
Sbjct  186   QFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSG--YPTS  243

Query  235   YLWEEVLQRDSLLDLLARYIHLQVEEKLTDEGRKVKKETMIFPRYHQMEAVRSLVNATQS  294
             YLWE+VL    LLD++ R+++L+   KL           +IFPRYHQ++ V+ L++ TQ 
Sbjct  244   YLWENVLTSYQLLDIFERFMNLEEKKKL-----------LIFPRYHQLDVVKKLISDTQH  292

Query  295   DGIGNNYLIEHSAGSGKSNTIAWLAHRLASLHSAENSRVFDSVIVITDRLVLDKQLQDTI  354
             +G G+NYLI+HSAGSGKSN+IAWLA +LASLHS E+  ++ SVIV+TDR VLD+QLQ+T+
Sbjct  293   HGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTL  352

Query  355   YQFEHKRGVVLKIDDN--SRQLAEALENGVPIVITTLQKFPFVSRQLMKMAEERGEAGGG  412
               FEH  G V  I+DN  S++L  A+++   I+ITTLQKFP +        +E ++++G 
Sbjct  353   MSFEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIY-------DEIDNTAG-  404

Query  413   ILPTRRFAVIIDEAHSSQGGESATDLKEVLGGESLV----EEAQRRATEEGEEKLVELYR  468
                 R FA+++DEAHSSQ G SA  LK+ L++        +E +    +++ +   ++ +
Sbjct  405   ----RSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQ  460

Query  469   SMAKRGRQDNLSFFAFTATPKHKTLKVFGKNGT-----PFHRYTMRQAIEEGFILDVLKN  523
             ++  +G++DNLSFFAFTATPK+KT+ +FG + +     PFH Y+MRQAIEEGFIL+VL+N
Sbjct  461   TLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQN  520

Query  524   YTTYATYFKLVQASGDDPQVERKNAAKALARFLRLHPHNIAQKTEIMVEHFYAVTRHKIG  583
             Y TY T +K+ ++  +DP++ + +A +A+A++  LHP  + QK+EIM+E+F +VT+  + 
Sbjct  521   YMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQ  580

Query  584   GHSKAMVVTGSRLEAVRYKVSFDDYIKAKGYA-IKSLVAFSGTVNDDKIPNKSYTEEGMN  642
             G++KAM+VT+SRL+AVRY   F  YIK KGY+ +  LVAFSGTV+DD I    YTE  MN
Sbjct  581   GRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVEDDGI---EYTEPKMN  637

Query  643   -----EGIKEKELPEKFNTPEYHVLLVAEKYQTGFDQPLLHTMYVDKRLAGIQAVQTLSR  697
                  E I+E++L E F++ ++++L+VAEKYQTGFD+PLLHTM+VDKRL G++AVQTLSR
Sbjct  638   LTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSR  697

Query  698   LNRIHPLKEDTFVLDFVNDREEIRTAFKMYFEGAEIGEEVDPAHMYRLQNELDVSGIYMP  757
             LNR  P K DTF+LDFVN  EEI  AF+ ++E++ + EE++   +Y  Q+ L    IY  
Sbjct  698   LNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYND  757

Query  758   EEIERFCMVYFKPKQRQSPADHEAINASLDPAVSRFTVFLRDNEEEAELWRGRLQSFRNL  817
             ++I+    +  ++KQ+Q+      +++ L P +SR++ +  D + +    R  L++F + 
Sbjct  758   DDIQTVMKLNRQAKQKQNDQLLGRLSSVLRPVISRYSDLPEDVQYD---FRVTLRNFNKW  814

Query  818   YNFLSQVIPYQDSDL--EKLYV-FLRHLSPKLPLRHSGPRY-NFDDEIRLEYYRLQKISE  873
             YN+++Q+    D +L  E ++  FL  + P     +    Y +++D ++LEYY+LQ    
Sbjct  815   YNYIAQIDRTFDKELLEESIFTGFLLKFIP-----EKQRNYIDIEDKVKLEYYKLQEDFK  869

Query  874   GSINLREGYAQA--LDGPTEVGTGVVREDP-MVLSRLIDLINERFGTDFNQADQLFFDQL  930
             G I L +   +   L  P+EV + V  E+    L+ +I+ INERF  DF Q+D+++  ++
Sbjct  870   GDIALVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPNDFTQGDRVLVKNM  929

Query  931   IETAIR--DESIIKAAEVNPEDKFI-LVFQNLLQSLFVERMDQNEDIFAR-FMNDSAFQK  986
              ET I   D  +++ A+ N+E+ F   +FQ+ +Q +++++ +Q E  +++ F N+  F  
Sbjct  930   RETLINNTDAKLVNMAQNNSEEMFANSLFQQQFQDFLIDQYNQGEAAYSKMFSNNRDFYD  989

Query  987   LVTKWLASEAYDKLRGIK  1004
              V + LA + Y  LR+ K
Sbjct  990   TVYQLLAKDYYRWLRSQK  1007

37) B932_2645 in NC_019396


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  589 bits (2226),  Expect = 2e-169, Method: Compositional matrix adjust.
 Identities = 397/953 (42%), Positives = 642/953 (68%), Gaps = 49/953 (5%)

Query  23   ADYNRGLAMDKELVLRFVRSTQPTEWAKLEGHYSTSAEERFFKQLEKALKDRSLLDVLRQ  82
            ++Y+  +A+D  ++L FV+ TQP +W +  + Y T+AE++F+K+L+  + ++++L+VLR+
Sbjct  34   THYDANIALDPTVLLEFVKQTQPKNWKRYVSIYRTNAEQKFLKRLNEEITNHGILHVLRK  93

Query  83   GIKIVPGIKFALCYFQPASALEPKRVAEYEANILSVMKEVEYSERNGNRLDIVLFLNGLP  142
            GI+   G+ F + YFQPAS+L+   + +YEAN +  +++ +YS++  N +D+VL +NG+P
Sbjct  94   GIR-DRGVSFKVVYFQPASSLNTENIKNYEANRFQCVRQFQYSNKYRNTIDMVLMINGIP  152

Query  143  VTTLEAKNLLTGSNFRHAEKQYRKDRSPAGEPLLAFKRGALVHFALDEDNVSMTTRLQNG  202
            + +LE KN  TG N  HA  Q+ +DR P  E ++ F+   LV FA+D+ NV MTT+L +G
Sbjct  153  LVALELKNQYTGQNVEHARLQFEQDRDPK-ELIFQFNSRFLVYFAVDHFNVLMTTKLAKG  211

Query  203  RTRFLPFNRG-----RDGGAGNPDVEGEFRVSYLYSSGIWGEAILSRPVLLDIIGRFMHL  257
             T FLPF++G     R GGAGNP   + +  SYL     W E +L+   LLDI+ RFM+L
Sbjct  212  NTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYL-----W-ENVLTSYQLLDIFERFMNL  265

Query  258  DASGKEEVVLFPRFHQLDAVRKLMSHSQAFGTGQNYLVQHSARSGKSNTIGWLAHHAINL  317
            +   K  +++FPR+HQLD V+KL+S++Q  G G+NYL+QHSA SGKSN+I+WLA H  +L
Sbjct  266  EE--KKKLLIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASL  323

Query  318  HDVQDKALFNTAIIVTDRIVLDRQLQSTVSQFEQVQGIVRKIDG--TSRQLKAAIASGVR  375
            H  +D++++++ I+VTDR VLDRQLQ+T+  FE+  G V  I++  TS++LK+AI    +
Sbjct  324  HSNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETIGDNKTSQDLKTAINDQKK  383

Query  376  IIVTTIQKFSTEHLREISGQSGRTFAVIVDEAHSSQSGKTAQAMTDALT-----------  424
            II+TT+QKF+     EI   +GR+FA++VDEAHSSQ+G +AQ + +AL+           
Sbjct  384  IIITTLQKFPVIY-DEIDNTAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQE  442

Query  425  -REAVSSDDVEDMIAAYQK--ARGPQANISFFAFTATPRNVTLERFGTKGPDGLPHPFHL  481
              E+V  + ++D     Q   ++G + N+SFFAFTATP++ T+E FGTK +DG  HPFH+
Sbjct  443  FEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFHI  502

Query  482  YSMRQAIEEGFILDVLQNYMTYKAYYELEKAVEDDPKLSGRRGQRKVARYANLHPTAIGQ  541
            YSMRQAIEEGFIL+VLQNYMTY++ Y + K++E+DP L+   + R +A+Y +LHP  + Q
Sbjct  503  YSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQ  562

Query  542  KVEIVVEHFRRHVAKLLDGQAKAMIVTSSRDHALRYYFGVRDYITQQGYADLCALVAFSG  601
            K EI++E+FR    K ++G++KAMIVT+SR HA+RY    + YI ++GY+D+  LVAFSG
Sbjct  563  KAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSG  622

Query  602  ELVFNGEKYTEAELNGFAETELPRRFDGFKPDGTAYSEQYQILIVAEKYQTGFDQPKLCA  661
             +  +G  YTE+ +N    T+   R++  +   +  SE++++LIVAEKYQTGFD+P L +
Sbjct  623  TVEDDGIEYTEPKMNL---THSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHT  679

Query  662  MYIDRKLSGLQAVQTLSRLNRTRPGKDQTFILDFQNTIEDIQNAFRPYYEATALEANSDP  721
            M++D++L G++AVQTLSRLNRT PGK +TFILDF NT E+I +AF+P+YEAT+L  + + 
Sbjct  680  MFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEINI  739

Query  722  NLVYDLEGRLFKFGYLDKEEIERFAQIYFKGRLNGGDR--ARLEGLVRQAVTRFECDDDE  779
            NL+YD +++L KF   + ++I+   ++  +++ +  D+  +RL +++R  ++R+  D  E
Sbjct  740  NLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLLGRLSSVLRPVISRY-SDLPE  798

Query  780  GRQEEFRQLLRSYMRFYSFISQVMNLEDTSLEKLSAFAAWLSRLLPDREIPPEIEITDDM  839
            + Q +FR  LR++ + Y++I+Q+    D  L   S F++ L +++P+++    I+I +D 
Sbjct  799  DVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFTGFLLKFIPEKQ-RNYIDI-EDK  856

Query  840  LRLQKFKVEQKEQGDASLSAGD--RTPLKPISEFGAKSYTEDEQKELSEIVKAFNERHGT  897
            ++L+ +K+++  +GD +L   D     L   SE  A    E+E   L+EI+  +NER   
Sbjct  857  VKLEYYKLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPN  916

Query  898  QFTEADMIRFEAVNAEILG---TDLSEMLRNNPPDVVYTAFAQAFFQGAIRMF  947
            +FT++D +    +   ++    + L +M +NN+ ++    FA+++FQ  ++ F
Sbjct  917  DFTQGDRVLVKNMRETLINNTDAKLVNMAQNNSEEM----FANSLFQQQFQDF  965

38) Fjoh_2695 in NC_009441


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  586 bits (2213),  Expect = 3e-168, Method: Compositional matrix adjust.
 Identities = 422/1028 (42%), Positives = 672/1028 (66%), Gaps = 66/1028 (6%)

Query  5    QTKEIAFEKCIETVLLA-TGYKTI--ASSSYDKDKAIFPETTLAFIQKTQPKTWEKLQSI  61
            + KEI FE+ IE+ L+   G  ++    + YD + A+ P   L F+++TQPK W +  SI
Sbjct  6    KNKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYVSI  65

Query  62   LGDNTGNQIFYDLTKWIELHGILSTLRHGFKCYGKQLQLAYFKPSHSMNEEVLERYHKNI  121
               N+ ++++  L   I  HGIL  LR G++  G  +++ YF+P+ S+N E +  Y+ N 
Sbjct  66   YRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEANR  125

Query  122  FGITRQLYYSNRNQNSIDVVLSVNGIPLVTLELKNQLSHQNITHAKKQYSNDRDPRELLF  181
            F   RQ+ YSN+ +N+ID+VL +NGIPLV+LELKNQ + QN+ HA+ Q+ +DRDP+EL+F
Sbjct  126  FQCVRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKELIF  185

Query  182  EFKKRTLVHFVVDTDVVEMTTRLAKEATYFLPFNKGNE-----GGAGNPVDILGLSYKTS  236
            +F+ R LV F VD   V MTT+LAK  TYFLPF++G++     GGAGNP +  G  Y TS
Sbjct  186  QFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSG--YPTS  243

Query  237  YLWKEVLQKDSLMDILGKFIHLQVEERITDEGRKIKKETMIFPRYHQLQAVRSMIETALK  296
            YLW +VL    L+DI+ +F++L+            KK  +IFPRYHQL+ V+ +I  +  
Sbjct  244  YLWENVLTSYQLLDIFERFMNLEE-----------KKKLLIFPRYHQLDVVKKLISDTQH  292

Query  297  DDVGTNYLIEHSAGSGKSNTIAWAAHRLSSLHKTDNTRLFDSVVVITDRLVLDRQLQDTI  356
            ++ G NYLI+HSAGSGKSN+IAW A +L+SLH  ++  ++ SV+V+TDR VLDRQLQ+T+
Sbjct  293  HGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTL  352

Query  357  YQFEHKKGVVLKI--DKDSKQLAEALENGVPIIITTLQKFPFVTDQLRKLAEERGEETIG  414
              FEH  G V  I  +K S++L  A+++   IIITTLQKFP + D++        ++T G
Sbjct  353  MSFEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEI--------DNTAG  404

Query  415  LLKTKNYAILVDEAHSSQSGETAADLKEVLGGealaqea----qekaqeeeaYGLEALYR  470
                +++AILVDEAHSSQ+G +A  LK+ L++   +       +E  +++   + + + +
Sbjct  405  ----RSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQ  460

Query  471  NMAKRGHQKNISFFAFTATPKHKTIKLFATNGE-----PLHKYTMHQAIEEGFILDVLEN  525
             +  +G++ N+SFFAFTATPK+KTI +F+T+       P+H Y+M+QAIEEGFIL+VL+N
Sbjct  461  TLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQN  520

Query  526  YTSYATFYKLIKASEEDPKVERKKAARALGRFMRLHPHNIAQKTEVMVEHFYQSTRHKIG  585
            Y +Y T YK+ K+ EEDP + +  A RA++++  LHP  + QK+E+M+E+F   T+  + 
Sbjct  521  YMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQ  580

Query  586  GKAKAMVVTGSRLEAVRYKQSFDEVIKAKGY-NIKSLVAFSGEVKDDKLPDTLYTEVEMN  644
            G++KAM+VT+SRL+AVRY Q F   IK KGY ++  LVAFSG V DD +    YTE  MN
Sbjct  581  GRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVEDDGIE---YTEPKMN  637

Query  645  -----KGIKEKELPEHFATPEYSILLVADKYQTGFDQPLLHTMYVDKRLSGIQSVQTLSR  699
                   I+E++L E F + ++++L+VA+KYQTGFD+PLLHTM+VDKRL G+++VQTLSR
Sbjct  638  LTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSR  697

Query  700  LNRTHPLKEDTFVLDFVNDREEIQAAFKTYYEGAVLGQEADPNNLYRIQQELLLEDIFTY  759
            LNRT P K DTF+LDFVN  EEI  AF+ +YE++ L +E + N +Y  Q  L   +I+  
Sbjct  698  LNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYND  757

Query  760  DDINHFTEIYFKPKEKQSNKDHENMNHILDIPVENFRHFLQEQKEEAELWRGKITAYKNL  819
            DDI+    +  ++K+KQ+++    ++ +L   +  + ++ ++ + +    R  +  +++ 
Sbjct  758  DDIQTVMKLNRQAKQKQNDQLLGRLSSVLRPVISRYSDLPEDVQYD---FRVTLRNFNKW  814

Query  820  YAFLSQIIPYQDSDLEKLFIFLRHLSNKLPKRNTGAGY-NFDDTVRLEYYRLQKISEGSI  878
            Y +++QI    D +L    IF   L + +P ++    Y +++D V+LEYY+LQ    G I
Sbjct  815  YNYIAQIDRTFDKELLEESIFTGFLLKFIPEKQR--NYIDIEDKVKLEYYKLQEDFKGDI  872

Query  879  SL--KTPKQYQLDGPTDVATGM-VREEYTPISRIVDVVNERYGTDFTQSDQYFFDQIIES  935
            +L      + QL  P++V + +   EEY +++ I++ +NER+  DFTQ+D+ +  ++ E+
Sbjct  873  ALVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPNDFTQGDRVLVKNMRET  932

Query  936  AIENDD--IVQAAQSNPQDKFT-LMFKNVLQQLFLERIDQNEDIFAR-YMEEKDFNKTVT  991
             I+N D  +V+ AQ+N+++ F+  +F++ +Q++++++ +Q E  +++ + +++DF  TV 
Sbjct  933  LINNTDAKLVNMAQNNSEEMFANSLFQQQFQDFLIDQYNQGEAAYSKMFSNNRDFYDTVY  992

Query  992  GLLAKEAF  999
             LLAK+ +
Sbjct  993  QLLAKDYY  1000

39) Metev_0465 in NC_014253


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  580 bits (2191),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 412/1011 (41%), Positives = 657/1011 (65%), Gaps = 58/1011 (5%)

Query  7    ENTFENDIVQTLVNQKGY--IHRKNSDYDKELCMDPEMVIEFIWATQSKEWEKLEKQYGE  64
            E  FE+DI  +LV+  G   ++ ++++YD ++ +DP +++EF+  TQ+K+W +    Y  
Sbjct  9    EINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYVSIYRT  68

Query  65   QVKERFLERLQKNIERRGTLDVLKKGIKDRGCRFDLVYFKPETTLNVEHQDRYKANRFSV  124
            +  ++FL RL+ +I  +G L+VL+KGI+DRG  F +VYF+P ++LN E+   Y ANRF  
Sbjct  69   NAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEANRFQC  128

Query  125  IQQLHYNTKNEKSIDLVLFINGLPIITSELKNPLNEQNVEHAIHQYRKDRSPKEPLLS-P  183
            ++Q++Y+ K  ++ID+VL ING+P+++ ELKN    QNVEHA  Q+ +DR PKE ++   
Sbjct  129  VRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKELIFQFN  188

Query  184  RRCFVHFAVDTDLVYMATKLKGESTKFLPFNRGYENGS---GNPPPEDPEKYKTYYLWEE  240
             R +V FAVD   V M+TKL   +T FLPF++G +  +   G   P +P  Y T YLWE+
Sbjct  189  SRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLWEN  248

Query  241  IWDKDMLLDIISDYIVLLDDDEY-IFPRYHQLKAVNSMIENARLNGPGHRYLVQHSTGSG  299
            +     LLDI+  ++ L +     IFPRYHQL  V+ +I +++ +GPG  YL+QHS+GSG
Sbjct  249  VLTSYQLLDIFERFMNLEEKKKLLIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSG  308

Query  300  KSFTIAWLCNKLSGLHDENNNRIFDSIIVITDRRVLDQQLSSTMFEFEQVRGTVEWIDSN  359
            KS +IAWL   L++LH ++++ I+ S+IV+TDR VLD+QL +T+  FE+  G VE I+ N
Sbjct  309  KSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETIGDN  368

Query  360  KKSEQLKQALESNKEIIVVTLQTFPFLVDEANQLSDRNFAIVVDEAHSSQSGETARGSRK  419
            K S++LK A++ +K II+ TLQ FP + DE ++ ++R+FAI+VDEAHSSQ+G +A+  + 
Sbjct  369  KTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTGSSAQKLKH  428

Query  420  VLVSADDV--QYEDEMEKDVEDVINSEIEKTV------GPAKNISYFAFTATPKQKTLEL  471
             L   +    +Y+ E E  VED    + ++ V      G   N+S+FAFTATPK+KT+E+
Sbjct  429  ALADKEASLKEYQ-EFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEM  487

Query  472  FGTKMPDGSYEPYHLYSMKQAIEEGFILNPLENYTTFETYFELKKKIEDDPEYDRTTAYG  531
            FGTK +DGSY+P+H+YSM+QAIEEGFILN L+NY T++T + + K IE+DPE  +T A  
Sbjct  488  FGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEA--  545

Query  532  LLRSHV--DSSKP-AISKKTSIMLDHFYNNIMTRIGGKAKAMVVTSSRANAVKYKLEFDK  588
             +R+    +S  P  + +K+ IM+++F +     + G++KAM+VT+SR +AV+Y  EF K
Sbjct  546  -VRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKK  604

Query  589  QINDNGYP-FEALVAFSGTVEGNDVEKVYSDYEFTESKMN------GFPDSKTSQYFDEN  641
             I+++GY   + LVAFSGTVE++++       E+TE+KMN       + +++  + F+ +
Sbjct  605  YIKEKGYTDMDVLVAFSGTVEDDGI-------EYTEPKMNLTHSGERIQENQLKEAFH-S  656

Query  642  DDYRILIVANKFQTGFDQPLLHTMYVDKKLGGVNAVQTLSRLNRIHPEKHDTMVLDFAND  701
            +D+ +LIVA+K+QTGFD+PLLHTM+VDK+L GV+AVQTLSRLNR  P K DT +LDF N 
Sbjct  657  EDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNT  716

Query  702  AEDIKKSFENFHVKTTLSEGTDPNKLHDYEDALKDFRIFTEDDVE---KFAQEYFSTSGT  758
            AE+I  +F+ F   T+L E  + N + D +  L+ F+I+ +DD++   K+ ++       
Sbjct  717  AEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQND  776

Query  759  Q--AKLYSILEPVIQEWESRPEEERKDFKKQMQSFTRLYAFLSHI-MTFRDTELEKLYQF  815
            Q  ++L S+L PVI      PE+ + DF+  +++F + Y ++++I  TF D EL     F
Sbjct  777  QLLGRLSSVLRPVISRYSDLPEDVQYDFRVTLRNFNKWYNYIAQIDRTF-DKELLEESIF  835

Query  816  SRFLVKKLKIGYKRLPTEILDCVDLESLRISEDSKGSIVLTDKE---GELKPISDMGTGT  872
            + FL+K +    +R   +I D V LE  ++ ED KG I L + +   G+L   S++ +  
Sbjct  836  TGFLLKFIPEK-QRNYIDIEDKVKLEYYKLQEDFKGDIALVNEDVENGQLAHPSEVNATV  894

Query  873  TREEELAPLSEILNELNERFGTEFTEDDRVAQVIEDMRDRLLKTEKLQRAANPEINSKDN  932
              EEE  +L+EI++ +NERF  +FT++DRV  ++ +MR+ L++    +    ++ NS + 
Sbjct  895  RPEEEYDSLNEIIHKINERFPNDFTQGDRV--LVKNMRETLINNTDAKLVNMAQNNSEEM  952

Query  933  FARTFEWFFDDEVENLI----NTSLDLYKKM-SDDGDLRHNVKQALLKDIY  978
            FA +   +F+++ ++++    N +   Y KM S++ D+ + V Q L KD Y
Sbjct  953  FANS---LFQQQFQDFLIDQYNQGEAAYSKMFSNNRDFYDTVYQLLAKDYY  1000

40) Dole_0278 in NC_009943


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  577 bits (2179),  Expect = 1e-165, Method: Compositional matrix adjust.
 Identities = 394/968 (41%), Positives = 641/968 (67%), Gaps = 64/968 (6%)

Query  7    EQDFEEHIEQHLLK-SGYHKRKPEE--YDKEACLIPAEVLKFIQSSQPKEYKKLQGYLKS  63
            E +FE++IE  L++ +G +  + ++  YD +  L P+ +L F++ +QPK+ K+  +  ++
Sbjct  9    EINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYVSIYRT  68

Query  64   ETDQKILSRLSAEVAKSGALSVLRKGFKTRGCTFKMAFFKPTSGMNPETQKVYKDNRFAI  123
            +++QK+L RL+ E+++ G L VLRKG++ RG +FK+ +F+P+S++N E  K Y  NRF  
Sbjct  69   NAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEANRFQC  128

Query  124  IRQLKYSVKNENSLDIALFLNGVPIITAELKNSLTGQFVENAIKQYKQDRDPREQLFKFK  183
            +RQ++YS K  N++D+ L +NG+P+++ ELKN  TGQ VE+A  Q+ QDRDP+E +F+F+
Sbjct  129  VRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKELIFQFN  188

Query  184  -RCLVHFAVGNEKAFMTTRLQQDKTTFLPFNLDTE---------NPVNPGGHKTAYLWED  233
             R LV FAV++ + +MTT+L +++T FLPF+ +++         NP NP+G  T+YLWE+
Sbjct  189  SRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLWEN  248

Query  234  ILQPDTLLDLIQNYLHIQKVKEQYYDKASGKVKSQEHEVFIFPRFHQLDAVRKILAAVRE  293
            +L +  LLD+++ +++++  K                 ++IFPR+HQLD V+K+++  ++
Sbjct  249  VLTSYQLLDIFERFMNLEEKKK----------------LLIFPRYHQLDVVKKLISDTQH  292

Query  294  DGAGNNYLVQHSAGSGKSNSIAWLAHHLASFYKTSKDTARMFDCIVVVSDRKVLDKQLQD  353
            +G+G+NYL+QHSAGSGKSNSIAWLA HLAS+   S++   ++  ++VV+DR VLD+QLQ+
Sbjct  293  HGPGKNYLIQHSAGSGKSNSIAWLAYHLASL--HSNEDQPIYSSVIVVTDRTVLDRQLQN  350

Query  354  TIKQFEQVKGVVQPI--DKTSGQLKEALEKGKSIIITTIQKFPVISKTMTELKGKRFAVI  411
            T+  FE+  G V+ I  +KTS +LK A++  K IIITT+QKFPVI   + +  G+ FA++
Sbjct  351  TLMSFEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAIL  410

Query  412  IDEAHSSQSGETSKHLKKVLS---VNLee----aeeedtvefdledeIVEEITSRGRQPH  464
            +DEAHSSQ+G +++ LK  L+    +L E     E  +   +D +D+IV+ + S+G++ +
Sbjct  411  VDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDN  470

Query  465  ISFFAFTATPKGKTLELFGRKNSAGKFVAFHTYSMRQAIEEHFILDVLENYTTFKRYFKL  524
            +SFFAFTATPK KT+E+FG K++ G + +FH YSMRQAIEE FIL+VL+NY T++  +K+
Sbjct  471  LSFFAFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKI  530

Query  525  AKKVEGDKEYEKKKALRLLMSYVDLHPHEIEMKSRIMLDHFLEKTANAVQGKGRAMVVTR  584
            AK +E D E  K  A+R +  Y  LHP  +  K+ IM+++F   T +AVQG+G+AM+VT 
Sbjct  531  AKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTA  590

Query  585  SRLHALRFYLNFKRLMKEMNLP-FKPLVAFSGTVKDPDSGDEHTETSLN------ELPSS  637
            SRLHA+R+  +FK+ +KE        LVAFSGTV   D G E TE  +N       +  +
Sbjct  591  SRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVE--DDGIEYTEPKMNLTHSGERIQEN  648

Query  638  QIVTAFKTPIYRIMIVANKFQTGFDEPMLHTMYVDKKLGGVNAVQTLSRLNRTMRGKSST  697
            Q+  AF +  + ++IVA+K+QTGFDEP+LHTM+VDK+L GV+AVQTLSRLNRTM GK+ T
Sbjct  649  QLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDT  708

Query  698  MVLDFVNDTEAIRLAFQDYYQTVFLEEETDPDKLYDLQAEIEGFSLFISKEVDAFAEIFF  757
             +LDFVN +E I  AFQ +Y++  L EE + + +YD Q+ +  F ++   ++++   +  
Sbjct  709  FILDFVNTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNR  768

Query  758  HPSEP-----MEKLQPILDTVVKRWKAIPDDNTKEDFRSALQSFIRLYGYISQI-ITFQD  811
            ++ +      + +L ++L  V+ R   +P+D  + DFR +L++F + Y YI+QI  TF+ 
Sbjct  769  QAKQKQNDQLLGRLSSVLRPVISRYSDLPED-VQYDFRVTLRNFNKWYNYIAQIDRTFDK  827

Query  812  VELEKLYVFCRNLNRKLPKRKGQLPY-EIQDAIDLASFRMQETSSGWIRLEKTDGEAKGI  870
              LE   +F   L + +P +  Q  Y +I+D + L  +++QE   G I L + D E   +
Sbjct  828  ELLEES-IFTGFLLKFIPEK--QRNYIDIEDKVKLEYYKLQEDFKGDIALVNEDVENGQL  884

Query  871  S----LGTPQHTNDEKDLLSNIIKTLNDTYGIELTDDDRVDIGKMQEKLQQRDDLREVMT  926
            +    + +  + ++E D L++II  +N+ +  ++T++DRV + +M+E L +  D + V  
Sbjct  885  AHPSEVNATVRPEEEYDSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAKLVNM  944

Query  927  GDNTLENM  934
            ++N  E+M
Sbjct  945  AQNNSEEM  952

41) lpa_00832 in NC_014125


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  571 bits (2157),  Expect = 7e-164, Method: Compositional matrix adjust.
 Identities = 390/950 (42%), Positives = 634/950 (67%), Gaps = 52/950 (5%)

Query  41   DFDRASALDKTLVMQFIKSTQLDEWKRLQEQYSDSAETEFFKQLEKALKSRGTLDVLRQG  100
            ++D   ALD T++++F+K TQ  +WKR    Y  +AE  F+K+L+  + ++G L+VLR+G
Sbjct  35   HYDANIALDPTVLLEFVKQTQPKNWKRYVSIYRTNAEQKFLKRLNEEITNHGILHVLRKG  94

Query  101  IKLIPGIKFSLCFFKPASGINKELLQLFEANILSVIDELKYSSKHDNRIDIGVFVNGIPL  160
            I+   G+ F + +F+PAS++N E ++ +EAN +  + +++YS+K  N ID+ + +NGIPL
Sbjct  95   IR-DRGVSFKVVYFQPASSLNTENIKNYEANRFQCVRQFQYSNKYRNTIDMVLMINGIPL  153

Query  161  ATIECKNQSTGTTFRHAEKQYRTDRSPAGEPLLTFKQGALVHFAMDEDNVSMTTRLANGK  220
             ++E KNQ TG    HA  Q+  DR P  E ++ F+   LV FA+D+ NV MTT+LA+G+
Sbjct  154  VALELKNQYTGQNVEHARLQFEQDRDPK-ELIFQFNSRFLVYFAVDHFNVLMTTKLAKGN  212

Query  221  TRFLPFNRGHNG-----GAGNPDIADEFRVGYLYADQPEGKAILSRDILLDIVGRFMHLE  275
            T FLPF++G NG     GAGNP  +  +  +YL  +      +L+   LLDI  RFM+LE
Sbjct  213  TYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLWEN------VLTSYQLLDIFERFMNLE  266

Query  276  VKDGKEVMIFPRFQQLDAVLKLLRHAKQHGPGHSYLIQHSAGSGKSNTIGWTAHRMITLH  335
             K  K ++IFPR++QLD V KL+ ++++HGPG +YLIQHSAGSGKSN+I+W A ++ +LH
Sbjct  267  EK--KKLLIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLH  324

Query  336  DEKDQPIFNTAIIVTDRIVLDRQLQNTVAQFEQTKGVVKKIDG--TSRQLKEAIKQGARI  393
             + DQPI+++ I+VTDR VLDRQLQNT+  FE+T G V  I++  TS++LK AI++  +I
Sbjct  325  SNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETIGDNKTSQDLKTAINDQKKI  384

Query  394  IITTIHKFSTEHLKEISGQSKRRFAVLIDEAHGSQSGKHADNLSKTLTREES--------  445
            IITT++KF+     EI   + R FA+L+DEAH+SQ+G  A++L  +L+  E+        
Sbjct  385  IITTLQKFPVIY-DEIDNTAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEF  443

Query  446  ----NNSPSDIEDMIADYQRQRGPQANISYFAFTATPRNVTLERFGTKGSDGLPYPFHLY  501
                ++ + D +D I +    +G + N+S+FAFTATP++ T+E FGTK +DG   PFH+Y
Sbjct  444  EESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFHIY  503

Query  502  SMRQAIEEGFILDVLQNYMTYKQYYKLEKAIEDDPELQGRRAHRRVARFAILHPTAIAQK  561
            SMRQAIEEGFIL+VLQNYMTY+  YK+ K+IE+DPEL    A R +A++  LHP  + QK
Sbjct  504  SMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQK  563

Query  562  VEVIVEHFRRHVMQEINGKAKAMVVTQSREHALKYYFGIKKYIEDKQYVGVKALVAFSGE  621
             E+++E+FR    + ++G++KAM+VT SR HA++Y   +KKYI +K Y ++  LVAFSG 
Sbjct  564  AEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGT  623

Query  622  LEIDGETYTEAELN------GFAETQLPEKFDK-DFQLLIVAEKYQTGFDQPKLCAMYID  674
            +E DG  YTE+ +N       + E QL E F+  DF+LLIVAEKYQTGFD+P L +M++D
Sbjct  624  VEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFVD  683

Query  675  RKLDGLQAVQTLSRLNRTTPGKINTYVLDFQNTIEDIQNAFRPFYEVTSLEEISDPNQVY  734
            ++L G++AVQTLSRLNRT PGK +T++LDF NT E+I +AF+PFYE TSL E  + N +Y
Sbjct  684  KRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININLIY  743

Query  735  ELEGRIKSFSIIDEDEVNRFSEVFYKGALDPHDRI--ALEKLVKNAVQRFEYEEDEGKRE  792
            + +++++ F I ++D+++    +  ++    +D++   L  +++  + R+  +  E+ + 
Sbjct  744  DTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLLGRLSSVLRPVISRYS-DLPEDVQY  802

Query  793  EFRQLLKSYMRFYSFVAQV-MSLQDTWLEKLFSYVSWLNRLLPNREVPPEIEITDDMIRL  851
            +FR  L+++ + Y+++AQ+  +++   LE  + + + L +++P+++    I+I +D ++L
Sbjct  803  DFRVTLRNFNKWYNYIAQIDRTFDKELLEESI-FTGFLLKFIPEKQ-RNYIDI-EDKVKL  859

Query  852  QAFRIEKKEQGSASLSPGT--TSPLSAIKEFGANAYTEDEERSLSEIIESFNQRHGTEFT  909
            + ++++   +G  +L       + L+   E  A    E+E  SL+EII+ +N+R   +FT
Sbjct  860  EYYKLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPNDFT  919

Query  910  KEDFLRFEKVNQEIL--SDENLKDMLKNNPPDVVFGAFSQAFFESAIQLF  957
            + D +   ++ + ++  +D +L +M +NN+ ++    F++++F+  +Q F
Sbjct  920  QGDRVLVKNMRETLINNTDAKLVNMAQNNSEEM----FANSLFQQQFQDF  965

42) hsdR in NC_006300


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  569 bits (2150),  Expect = 2e-163, Method: Compositional matrix adjust.
 Identities = 420/1042 (41%), Positives = 659/1042 (64%), Gaps = 76/1042 (7%)

Query  4     EKDFENEIERFLLAEGGY--VQGKNSEYNKETALFEEDVLSFIQTTQPKRWERLAQGQKA  61
             E +FE++IE  L+  GG   V+ ++++Y+ + AL    +L F++ TQPK W R     ++
Sbjct  9     EINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYVSIYRT  68

Query  62    NVKAVLIKALCQELEAKGALDVLRHGFRCYGKTFQTAYFAPNTSINEETQQRYDANILKI  121
             N    ++K L +E+   G L+VLR G+R  G +F+  YF P +S+N E  + Y+AN ++ 
Sbjct  69    NAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEANRFQC  128

Query  122   TRQVVTEDGDRP--DIVLSLNGIPVATAELKNVLSATHWTVEDAIYQYRKERNPKGKLFT  179
              RQ    +  R   D+VL +NGIP+ + ELKN  ++ +  VE+A  Q+ ++R+PK  +F 
Sbjct  129   VRQFQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQN--VEHARLQFEQDRDPKELIFQ  186

Query  180   FKKRTLVHFAVDTEEVYMTTKLDGEQTYFLPFNRGYNK-----GRGNPPIAGNVKTAYLW  234
             F+ R LV FAVD  +V MTTKL   +TYFLPF++G N      G GNP+ ++   T+YLW
Sbjct  187   FNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLW  246

Query  235   EQILTRHSFLEIIARFLHLSVEEKKVRTDSGLRLLQKETMIFPRFHQLDAVRQLIAHSRE  294
             E++LT   +L+I+ RF++L  EEKK       +LL     IFPR+HQLD V++LI+++++
Sbjct  247   ENVLTSYQLLDIFERFMNL--EEKK-------KLL-----IFPRYHQLDVVKKLISDTQH  292

Query  295   HGAGRNYLIQHSAGSGKSNTIAWLAHQLSSLHNRDDQKIFNSVIVVTDRVVLDRQLQATI  354
             HG+G+NYLIQHSAGSGKSN+IAWLA +L+SLH+ +DQ I++SVIVVTDR VLDRQLQ T+
Sbjct  293   HGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTL  352

Query  355   SQFEHKDGVVQKIEHN--SQQLAVAIASDTPIIITTIQKFPFVMAALARKQESGINVAIS  412
               FEH  G V+ I +N  SQ+L  AI  +  IIITT+QKFP +   +            +
Sbjct  353   MSFEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEID-----------N  401

Query  413   TEGKQFAVIVDEAHSSQSGEAAMELRKVLNKDGIEAAVMAEFLdddddETGLSDEAKKQL  472
             T G+ FA++VDEAHSSQ+G +A  L+  L           EF ++  ++ +L D+   Q+
Sbjct  402   TAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEF-EESVEDQSLDDQD--QI  458

Query  473   FIEAAKRQRQPNLSFFAFTATPKWKTKALFDEPGADGN-TPFHHYTMKQAIEEGFILDVL  531
                   + ++ NLSFFAFTATPK KT  +F+   ADG+  PFH Y+M+QAIEEGFIL+VL
Sbjct  459   VQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVL  518

Query  532   ENYATWKQYFKLLKISENDKELSKSKAKKEMMRFVNLHPSVIAQKVEIIVEHFRTTTMHK  591
             +NY T +  +K+ K  E+D EL+K+ A + + ++ +LHP V+ QK EI++E+FR+ T   
Sbjct  519   QNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKA  578

Query  592   IGGRAKAMVVTNGREHAVRYKLAFDEYIKEKGYTGIKSLVAFSGGITLKEAPEKEYTEAL  651
             + GR+KAM+VT +R HAVRY   F  YIKEKGYT++  LVAFSG +   E    EYTE+ 
Sbjct  579   VQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTV---EDDGIEYTEPK  635

Query  652   MN------GIREVDLPEQFASEHYQVLLVAEKYQTGFDQPLLHTMFVDKKLSGIQAVQTL  705
             MN       I+E +L E F SE++++L+VAEKYQTGFD+PLLHTMFVDK+L G++AVQTL
Sbjct  636   MNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTL  695

Query  706   SRLNRCAKGKTDTFVLDFVNQPEDIYKAFKPFYEVTELGDIPSNEKLDELAATLDQWKIY  765
             SRLNR   GKTDTF+LDFVN +E+IY AF+PFYE T L +  + + + +  + L +  IY
Sbjct  696   SRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIY  755

Query  766   FQPEIRQFAEIWFSAKQQPTGSEHKQLNSILDKAVARFLAVGDEIQQGVDDLSELKNEQQ  825
              + +I+    +   AKQ+  +    +L+S+L   ++R+  + +++Q +            
Sbjct  756   NDDDIQTVMKLNRQAKQKQNDQLLGRLSSVLRPVISRYSDLPEDVQYD------------  803

Query  826   NLFKSQLKSYLSLYQFVSQI-MDYSDDLHEQRYVYLRALQSKLPNNSDRNKVDLSKDVVL  884
               F+  L+++   Y++++QI   +  +L E+  ++  ++  K+  + +RN +D+   V L
Sbjct  804   --FRVTLRNFNKWYNYIAQIDRTFDKELLEES-IF-TGFLLKFIPEKQRNYIDIEDKVKL  859

Query  885   HFYKLQKRSEGKIHL--DEGGADPLKGATDVGSG--RADATDELSNMVQEINGMYGTQFT  940
             ++YKLQ    G I L  ++   + L  +++V +     +  D L+++++ IN  +  +FT
Sbjct  860   EYYKLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPNDFT  919

Query  941   IADQLFFEQIIEDALADNE--IVGAAKNNSLESFT-AYFADKLLDLLFQR-MQGNEEISN  996
              +D+++  ++ E  + + +  +V  A+NNS E F+ + F +++ D+L+++  QG+   S+
Sbjct  920   QGDRVLVKNMRETLINNTDAKLVNMAQNNSEEMFANSLFQQQFQDFLIDQYNQGEAAYSK  979

Query  997   QVMSDESLRNRVVKRLAKQIYQ  1018
                ++  + + V + LAK+ Y+
Sbjct  980   MFSNNRDFYDTVYQLLAKDYYR  1001

43) LPC_2788 in NC_009494


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  567 bits (2142),  Expect = 1e-162, Method: Compositional matrix adjust.
 Identities = 390/950 (42%), Positives = 634/950 (67%), Gaps = 52/950 (5%)

Query  41   DFDRASALDKTLVMQFIKSTQLDEWKRLQEQYSDSAETEFFKQLEKALKSRGTLDVLRQG  100
            ++D   ALD T++++F+K TQ  +WKR    Y  +AE  F+K+L+  + ++G L+VLR+G
Sbjct  35   HYDANIALDPTVLLEFVKQTQPKNWKRYVSIYRTNAEQKFLKRLNEEITNHGILHVLRKG  94

Query  101  IKLIPGIKFSLCFFKPASGINKELLQLFEANILSVIDELKYSSKHDNRIDIGVFVNGIPL  160
            I+   G+ F + +F+PAS++N E ++ +EAN +  + +++YS+K  N ID+ + +NGIPL
Sbjct  95   IR-DRGVSFKVVYFQPASSLNTENIKNYEANRFQCVRQFQYSNKYRNTIDMVLMINGIPL  153

Query  161  ATIECKNQSTGTTFRHAEKQYRTDRSPAGEPLLTFKQGALVHFAMDEDNVSMTTRLANGK  220
             ++E KNQ TG    HA  Q+  DR P  E ++ F+   LV FA+D+ NV MTT+LA+G+
Sbjct  154  VALELKNQYTGQNVEHARLQFEQDRDPK-ELIFQFNSRFLVYFAVDHFNVLMTTKLAKGN  212

Query  221  TRFLPFNRGHNG-----GAGNPDIADEFRVGYLYADQPEGKAILSRDILLDIVGRFMHLE  275
            T FLPF++G NG     GAGNP  +  +  +YL  +      +L+   LLDI  RFM+LE
Sbjct  213  TYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLWEN------VLTSYQLLDIFERFMNLE  266

Query  276  VKDGKEVMIFPRFQQLDAVLRLLRHAKQHGPGHSYLIQHSAGSGKSNTIGWTAHRMITLH  335
             K  K ++IFPR++QLD V +L+ ++++HGPG +YLIQHSAGSGKSN+I+W A ++ +LH
Sbjct  267  EK--KKLLIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLH  324

Query  336  DEKDQPIFNTAIIVTDRIVLDRQLQNTVAQFEQTKGVVKKIDG--TSRQLKEAIKQGARI  393
             + DQPI+++ I+VTDR VLDRQLQNT+  FE+T G V  I++  TS++LK AI++  +I
Sbjct  325  SNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETIGDNKTSQDLKTAINDQKKI  384

Query  394  IITTIHKFSTDHLKEISGQSKRRFAVLIDEAHGSQSGKYADNLSKTLTREEG--------  445
            IITT++KF+     EI   + R FA+L+DEAH+SQ+G  A++L  +L+  E+        
Sbjct  385  IITTLQKFPVIY-DEIDNTAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEF  443

Query  446  ----NNTPSDIEDMIAEYQRQRGPQDNISYFAFTATPRNVTLERFGTKGSDGLPYPFHLY  501
                ++ + D +D I +    +G +DN+S+FAFTATP++ T+E FGTK +DG   PFH+Y
Sbjct  444  EESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFHIY  503

Query  502  SMRQAIEEGFILDVLQNYMTYKQYYKLEKAIEDDPELQGRRAHRRVARFAILHPTAIAQK  561
            SMRQAIEEGFIL+VLQNYMTY+  YK+ K+IE+DPEL    A R +A++  LHP  + QK
Sbjct  504  SMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQK  563

Query  562  VEVIVEHFCRHVMQEINGKAKAMVVTQSREHALKYYFGIKKYIEEKQYVGVKALVAFSGE  621
             E+++E+F     + ++G++KAM+VT SR HA++Y   +KKYI EK Y ++  LVAFSG 
Sbjct  564  AEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGT  623

Query  622  LEIDGETYTEAELN------GFAETQLPEKFDK-DFQLLIVAEKYQTGFDQPKLCAMYID  674
            +E DG  YTE+ +N       + E QL E F+  DF+LLIVAEKYQTGFD+P L +M++D
Sbjct  624  VEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFVD  683

Query  675  RKLDGLQAVQTLSRLNRTTPGKINTYVLDFQNTIEDIQNAFRPFYEVTSLEEISDPNQVY  734
            ++L G++AVQTLSRLNRT PGK +T++LDF NT E+I +AF+PFYE TSL E  + N +Y
Sbjct  684  KRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININLIY  743

Query  735  ELEGRIKSFSIIDEDEVNRFSEVFYKGALDPHDRI--ALEKLVKNAVQRFEYEEDEGKRE  792
            + +++++ F I ++D+++    +  ++    +D++   L  +++  + R+  +  E+ + 
Sbjct  744  DTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLLGRLSSVLRPVISRYS-DLPEDVQY  802

Query  793  EFRQLLKSYMRFYSFVAQV-MSLQDTWLEKLFSYVSWLNRLLPNREVPPEIEITDDMIRL  851
            +FR  L+++ + Y+++AQ+  +++   LE  + + + L +++P+++    I+I +D ++L
Sbjct  803  DFRVTLRNFNKWYNYIAQIDRTFDKELLEESI-FTGFLLKFIPEKQ-RNYIDI-EDKVKL  859

Query  852  QAFRIEKKEQGSASLSPGT--TSPLSAIKEFGANAYTEDEERSLSEIIESFNQRHGTEFT  909
            + ++++   +G  +L       + L+   E  A    E+E  SL+EII+ +N+R   +FT
Sbjct  860  EYYKLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPNDFT  919

Query  910  KEDFLRFEKVNQEIL--SDDNLKDMLKNNPPDVVFGAFSQAFFESAIQLF  957
            + D +   ++ + ++  +D +L +M +NN+ ++    F++++F+  +Q F
Sbjct  920  QGDRVLVKNMRETLINNTDAKLVNMAQNNSEEM----FANSLFQQQFQDF  965

44) Mvol_0516 in NC_014222


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  558 bits (2108),  Expect = 5e-160, Method: Compositional matrix adjust.
 Identities = 404/989 (41%), Positives = 653/989 (67%), Gaps = 50/989 (5%)

Query  34    NKNYDKHYAIDKECLFNFLELTQKNELKELNEIYGDNYRSKIIENLDKQLRIMGIIHILK  93
             + +YD + A+D   L++F+  TQ ++ K    IY  N   K++  L+ ++   GI+H+L+
Sbjct  33    DTHYDANIALDPTVLLEFVKQTQPKNWKRYVSIYRTNAEQKFLKRLNEEITNHGILHVLR  92

Query  94    HGYKDMGVKLKLAYFKPANNLNADQNKLYGQNIVSVTEELNYTQD--KRIDLVIFLNGMP  151
              G +D GV +K+ YF+PA++LN+++ K Y  N      +++Y++   + ID+V+ +NG+P
Sbjct  93    KGIRDRGVSFKVVYFQPASSLNTENIKNYEANRFQCVRQFQYSNKYRNTIDMVLMINGIP  152

Query  152   ITTIEVKNPYTGQTYKNAIKQYKKTRFNTEKLFKFKERAIINFAMDEDQVYMTTQLKGED  211
             + ++E+KN YTGQ   +A  Q+ + R   E +F+F+ R ++ FA+D+ +V MTT+L   +
Sbjct  153   LVALELKNQYTGQNVEHARLQFEQDRDPKELIFQFNSRFLVYFAVDHFNVLMTTKLAKGN  212

Query  212   TIFLPFNLGVGD-----GAGNPNVTGKLKTYYMWENILTKDSLLEIIGKFVYVQKQEHEV  266
             T FLPF+ G  +     GAGNP+  +   T Y+WEN+LT   LL+I+ +F+ ++ +    
Sbjct  213   TYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLWENVLTSYQLLDIFERFMNLEEKK---  269

Query  267   LDDNGDYKIITTEKTIFPRYHQLDCTRDILNHVIQNGSGQKYLIQHSAGSGKTNSITWLS  326
                    K++     IFPRYHQLD  + ++++  ++G+G++YLIQHSAGSGK+NSI+WL+
Sbjct  270   -------KLL-----IFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLA  317

Query  327   HRLSSLHDKNDKVIFDGVIVVTDRKVLDKQLQDSIYQLEHKTGVVAKI--DKDSNQLAKE  384
              +L+SLH ++D+ I+ +VIVVTDR VLD+QLQ+++  +EH  G V  I  +K S++L   
Sbjct  318   YHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETIGDNKTSQDLKTA  377

Query  385   IEKGTKIIISTIQKFPHVLKKLADTKGKKYAIVIDEAHSSTSGKNMMALKESL-----SL  439
             I+   KIII+T+QKFP +   + +T G+ +AI++DEAHSS +G +   LK++L     SL
Sbjct  378   INDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASL  437

Query  440   DeaikiaeeeesqeidsedkiNKELKNFTDQSNVSFFAYTATPKATTLRLFGTKSDDDND  499
              E   + E  E Q +D +D+I + L +  ++ N+SFFA+TATPK  T+ +FGTK   + D
Sbjct  438   KEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTK---QAD  494

Query  500   DKYYPFHIYSMRQAIEEGFILDVLKNYMTYKMCYKVSKTIEEDPEFDKARATKSIMRYVT  559
             + Y PFHIYSMRQAIEEGFIL+VL+NYMTY+  YK++K+IEEDPE+ K+ A ++I +Y +
Sbjct  495   GSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQS  554

Query  560   LHPCNISQKTEIIIEHFRNYTMKKIGGHAKAMLITPSRLHAVRYKLEFDKYIKEKGYDDL  619
             LHP  + QK+EI+IE+FR+ T K + G++KAM++T+SRLHAVRY  EF KYIKEKGY D+
Sbjct  555   LHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDM  614

Query  620   KTLVAFSGTVKDTNSLEYTESGMN------EISQANLPVEFDKEESKILIVANKYQTGFD  673
               LVAFSGTV D +++EYTE+ MN       I + +L   F+ E+ ++LIVA+KYQTGFD
Sbjct  615   DVLVAFSGTVED-DGIEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFD  673

Query  674   QPKLHTMYIDKKLFGVKAVQTLSRLNRIYPGKEDTFILDFVNEPEDIQRAFMPFYSMTTL  733
             +P LHTM++DK+L GVKAVQTLSRLNR  PGK DTFILDFVN +E+I  AF PFY  T+L
Sbjct  674   EPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSL  733

Query  734   NNDIDPNDIYTLENEIYAKQVINEEDVKKFTDLFYKDNLTNRGRALE--SNYINNSLKRi  791
             +++I+ N IY  ++ +   ++ N++D++    L  + +  + ++ L   S+ +   + R 
Sbjct  734   KEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLLGRLSSVLRPVISRY  793

Query  792   ekftteetiefkNLAKKFINLYNLIIQIFALKDSDIHRLNIYLRYLLKKIEIENTGGVDL  851
               +  +   +F+   ++F + YN I QI    D ++   +I+  +LLK I   +   +D+
Sbjct  794   SDLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFTGFLLKFIPEKQRNYIDI  853

Query  852   TNKVILEYYSLKKGKLDEIELRSSD--GGIDIHISE--GGTKGENP-DLLSNIIKTLNDK  906
              +KV LEYY L+ +  ++I L + D   G   H SE  +  + E+  D L++II  +N++
Sbjct  854   EDKVKLEYYKLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINER  913

Query  907   FGTEFSDSEKLAVEQIsnnlksneklklnATANDY--ELFRLA-FDKSFEEGVVNEFSKN  963
             F  +F++++++ V ++ + L +N   KL   A++   E+F  + F++ F++ +++++++ 
Sbjct  914   FPNDFTQGDRVLVKNMRETLINNTDAKLVNMAQNNSEEMFANSLFQQQFQDFLIDQYNQG  973

Query  964   EIFYGKILKDN-DFKNKLIDLLAMDIYRW  991
             E  Y+K++ +N DF + + +LLA D YRW
Sbjct  974   EAAYSKMFSNNRDFYDTVYQLLAKDYYRW  1002

45) Cbei_3156 in NC_009617


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  552 bits (2082),  Expect = 6e-158, Method: Compositional matrix adjust.
 Identities = 392/902 (44%), Positives = 613/902 (68%), Gaps = 30/902 (3%)

Query  67   FLDLVDSHIKKRGLIDVLRNGITDIMMNGKFEFVYFKPNSNLNKTAIDKYNENIFKITRQ  126
            FL  ++ +I ++G+++VLR+GI D      F  VYF+P S+LN   I +Y+ N F+  RQ
Sbjct  74   FLKRLNEEITNHGILHVLRKGIRD--RGVSFKVVYFQPASSLNTENIKNYEANRFQCVRQ  131

Query  127  FKYSTKNNNTLDVVLSINGFPVIVIELKNQFTNQNVYDAIKQYKEDRDPKEKLFGFNERV  186
            F+YS K  NT+D+VL ING+P++ +ELKNQ+T QNV +A  Q+ +DRDPKE +F FN R 
Sbjct  132  FQYSNKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPKELIFQFNSRF  191

Query  187  LVYFTVDTDEVYMTTQLKGDKTFFLPFnkgnnkg-----kgnPTVEGKVKTHYLWEEILV  241
            LVYF+VD  +V MTT+L  ++T+FLPF++G+N        GNP+  +   T YLWE++L 
Sbjct  192  LVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLWENVLT  251

Query  242  HDSLLDIINRFYFIQEDEDKKKKAIFPRYHQLDAVRKMVKDLEVNKAGLNYLIQHSAGSG  301
               LLDI++RF    + E+KKK  IFPRYHQLD V+K++ D + + +G NYLIQHSAGSG
Sbjct  252  SYQLLDIFERF---MNLEEKKKLLIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSG  308

Query  302  KTNTIAWSAHRLSSLHDEENNPIFDSVIVITDRKVLDKQLQDAIYQLEHKKGLVVKIDDK  361
            K+N+IAW A +L+SLH +E++PI+ SVIV+TDR VLD+QLQ+++  +EH  G V  I+D+
Sbjct  309  KSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETIGDN  368

Query  362  KNSSDLAKAIESGVKIIITTIQKFPYALQKIESLEKRKYAVIIDEAHSSTAGENMGALKE  421
            K S DL  AI+   KIIITT+QKFP   + I++   R +A+++DEAHSS +G +   LK+
Sbjct  369  KTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTGSSAQKLKH  428

Query  422  TLAGK--TLeeaakqeseeeknekssMDKMTDLIEKRTDLGNVSFFAFTATPKNKTLQIF  479
            +LA+K  +L E    E   E +     D++ + +  + + +N+SFFAFTATPK+KT+++F
Sbjct  429  ALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMF  488

Query  480  GRAGEDGKSHEFHLYSMRQAIEEKFILDVLKNYMPVSVYYKVGKKIADNPEFDKGEAKKA  539
            G    DG  H FH+YSMRQAIEE FIL+VL+NYM  +  YK++K I ++PE+ K EA +A
Sbjct  489  GTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRA  548

Query  540  INRFVSLNEHNIRQKVETIVDDFMDNRSMWIDGKAKGMVVTASRLHAVRYKIAIDKYIKE  599
            I ++ SL+   +RQK E ++++F       ++G++K+M+VTASRLHAVRY   + KYIKE
Sbjct  549  IAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKE  608

Query  600  KGY-NIKALVAFSGTVKDGEEEFTEVEMNRIVAAD-ITDSNLPNIFDKNDFKILIVAEKY  657
            KGY ++  LVAFSGTV D+  E+TE  MN   +++ I +++L + F+ +DF++LIVAEKY
Sbjct  609  KGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLIVAEKY  668

Query  658  QTGFDQPKLCAMYVDKKLDGVKTVQTLSRLNRTYPSK-QTFVLDFQNSTEDIQEAYKPYF  716
            QTGFD+P L +M+VDK+L GVK+VQTLSRLNRT P+K +TF+LDF N++E+I EA++P++
Sbjct  669  QTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFY  728

Query  717  EATNIDKVTDPNVVNDLWYQLHEYGIYNDEELNDFAILYYKEKRTANQD--AKMNNIIDK  774
            EAT++    + N++ D   +L+ + IYND++++    L  + K+  N++  +++++++  
Sbjct  729  EATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLLGRLSSVLRP  788

Query  775  GVERFCLLeanseeegeefkkkaskYITFYNFLLQIYPLKNLNLLRLQIYLVALLKKLPK  834
             + R+  L   +E+   +F+    ++   YN++ QI    + +LL   I+   LLK +P 
Sbjct  789  VISRYSDL---PEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFTGFLLKFIPE  845

Query  835  TGKHKIDIDNLLSLDYYKLQKLGKDDKRGEDISLSYGEGELVGISEDAQSRIN-EPEEEY  893
              ++ IDI++ + L+YYKLQ    +D +G DI+L   + E   +++ ++      PEEEY
Sbjct  846  KQRNYIDIEDKVKLEYYKLQ----EDFKG-DIALVNEDVENGQLAHPSEVNATVRPEEEY  900

Query  894  --LDDIIKRINDIFGINLTEEDRIIIDQYEEMFKNDKQVMDIAKANSYEDLVKTFAKSHF  951
              L++II +IN+ F  ++T+ DR+++ +  E + N+ +   +  A++  +    FA+S F
Sbjct  901  DSLNEIIHKINERFPNDFTQGDRVLVKNMRETLINNTDAKLVNMAQNNSE--EMFANSLF  958

Query  952  KR  953
            ++
Sbjct  959  QQ  960

46) BLASA_2161 in NC_016943


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  552 bits (2082),  Expect = 7e-158, Method: Compositional matrix adjust.
 Identities = 385/861 (45%), Positives = 577/861 (68%), Gaps = 67/861 (7%)

Query  4    HTESDFEAAIEAHLLQHG-WRHGS--PTDYDVAFSLDPVQLVEFVQETQPKVWANLTQQH  60
            + E +FE  IEA L+Q G W       T+YD  ++LDP  L+EFV++TQPK W       
Sbjct  7    NKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYVSIY  66

Query  61   GAAVVPKVVKRIADEIDAHGVVQVLRRGVKERGQRIQLAFFRPTHGLTPELVENYARNRL  120
             +    K +KR+ +EI  HG+++VLR+G+++RG  +++ +F+P+ +L  E + NY  NR+
Sbjct  67   RTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEANRF  126

Query  121  LVYRQLHHSESSPHQSLDLMLAVNGIPVATAELKNHFTGQTVEHAKAQYRDPKQRNPADR  180
               RQ++ S+   ++++D++L +NGIP+ + ELKN++TGQ VEHA+ Q+   ++R+P + 
Sbjct  127  QCVRQFQYSNKY-RNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQF--EQDRDPKEL  183

Query  181  IF--ARRALAHFAVDPDVVFMTTKLDGPKTVFLPFNQGSDgpgrkggkgnpinpkgHRTA  238
            IF    R L  FAVD   V+MTTKL   +T FLPF+QGS+GPGR GG GNP NP G  T+
Sbjct  184  IFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTS  243

Query  239  YLWEQVWARDTWLDLLHRYVQEEVTKQGGRKVLFPRYHQWDVVERLTAHAAVHGAGQSYL  298
            YLWE+V +    LD+++R+++ E  K   + ++FPRYHQ DVV +L +++  HG+G++YL
Sbjct  244  YLWENVLTSYQLLDIFERFMNLEEKK---KLLIFPRYHQLDVVKKLISDTQHHGPGKNYL  300

Query  299  LQHSAGSGKSNSIAWLAHRLADLHSPSDAAALAPGAQTGTDELVFDKVVVITDRRVLDTQ  358
            +QHSAGSGKSNSIAWLA +LA LHS  D +             ++  V+V+TDR VLD Q
Sbjct  301  IQHSAGSGKSNSIAWLAYHLASLHSNEDQP-------------IYSSVIVVTDRTVLDRQ  347

Query  359  LQATISGFEHVQGLLQRIDQD--SQQLKAALADAKTKIIITTLQKFPVIAKD-AAVVGKR  415
            LQ T+ +FEH  G ++ I+++  SQ+LK+A+ D K KIIITTLQKFPVI  +     G+ 
Sbjct  348  LQNTLMSFEHTVGQVETIGDNKTSQDLKTAINDQK-KIIITTLQKFPVIYDEIDNTAGRS  406

Query  416  VAVIVDEAHSSQSGDAAQGLKKVLGGSASNGADPLTaaeaeaagaesaqaddqdLLvsav  475
             A++VDEAHSSQ+G +AQ LK  L++  ++  +                   Q++  S  
Sbjct  407  FAILVDEAHSSQTGSSAQKLKHALADKEASLKE------------------YQEFEESVE  448

Query  476  taavnsanpvaESAESRGRSPNLSFFAFTATPKGKTLQLFGTPRDEAGTTVYEPFHLYSM  535
              +++  + + ++  S+G+  NLSFFAFTATPK KT+++FGT + +++   Y+PFH+YSM
Sbjct  449  DQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQADGS---YHPFHIYSM  505

Query  536  RQAIEEGFILDVLANYVTYKRYYRLANGLTSDDPEVEKGKAAVALARFVDLHPSNLDQRA  595
            RQAIEEGFIL+VL NY+TY+  Y++A+++  +DPE+ K  A  A+A++  LHP  L Q+A
Sbjct  506  RQAIEEGFILNVLQNYMTYNTSYKIAKSI-EEDPELPKTEAVRAIAKYQSLHPWVLRQKA  564

Query  596  EIIIEHFRTVTAGKIGGKAKAMVVTGSRLHAVRYLAAVQRYLDKKQLTGIRALVAFSGSV  655
            EI+IE+FR+VT   + G++KAM+VT+SRLHAVRY+   ++Y+  K  T++  LVAFSG+V
Sbjct  565  EIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTV  624

Query  656  LDSDV----PGDPVTESGLNGFPETQTKQRFHDEG-QLLIVAEKYQTGFDEPLLHTMYVD  710
             D ++    P   +T+SG + + E Q K+ FH E+ +LLIVAEKYQTGFDEPLLHTM+VD
Sbjct  625  EDDGIEYTEPKMNLTHSG-ERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFVD  683

Query  711  KKLEGVKAVQTLSRLNRIHAGKEDTFVLDFRNTAEEMRAQFAPFYE-TSWTEETDPNLLY  769
            K+L GVKAVQTLSRLNR  +GK DTF+LDF NTAEE+   F PFYE TS  EE + NL+Y
Sbjct  684  KRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININLIY  743

Query  770  NLQTRIENHHVIDPEEQQKAVTAFLLGNSATH-------ATVSANVDPAVLRAGNLPEHE  822
            + Q+++ + H+ + ++ Q  +    L   A +       + +S+ + P + R ++LPE+ 
Sbjct  744  DTQSKLRKFHIYNDDDIQTVMK---LNRQAKQKQNDQLLGRLSSVLRPVISRYSDLPEDV  800

Query  823  LADLRDALKAFVRAYAFLGQV  843
              D+R +L+ F + Y +++Q+
Sbjct  801  QYDFRVTLRNFNKWYNYIAQI  821

47) Tgr7_0598 in NC_011901


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  519 bits (1957),  Expect = 4e-148, Method: Compositional matrix adjust.
 Identities = 341/833 (41%), Positives = 538/833 (65%), Gaps = 73/833 (8%)

Query  3    KARENVFQQAIVTDLVG-QGWLEGK--SEHYDRVLALYPEDLVGYVRNTQPEALEKLTKF  59
            K +E  F+Q I + LV   GW   +    HYD  +AL P  L+ +V++TQP    +   +
Sbjct  6    KNKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYVSI  65

Query  60   YGDKVEDKLLQRAAEQMDKHGALHVLRHGFKDRGAKIRLCTFKPDHGLNPETLARYEANR  119
            Y  + E+K+L+R  E++ +HG LHVLR G++DRG  +++  F+P  +LN E +  YEANR
Sbjct  66   YRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEANR  125

Query  120  LRVVQEVSYSPHAREGYNPRLDLVLFVNGVPVATLELKSEFK-QAIDNAKWQYkkdrppk  178
            ++ V++  YS    + Y   +D+VL +NG+P+ +LELK+++  Q +++A+ Q+ +DR PK
Sbjct  126  FQCVRQFQYS----NKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDRDPK  181

Query  179  dpktrkpepLLAFGKRALVHFAVSQEEVWMATRLDGMKTFFLPFNKGFEG-----GAGNP  233
            +        ++ F  R LV FAV + +V M+T+L   +T+FLPF++G +G     GAGNP
Sbjct  182  EL-------IFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNP  234

Query  234  PNPDGYATDYLWRQVFARDAWLDILGRFIHLQKEEKEDGFGKRYTKENLIFPRFHQWDAV  293
            +NP GY+T YLW +V++    LDI+ RF++L+             K  LIFPR+HQ D V
Sbjct  235  SNPSGYPTSYLWENVLTSYQLLDIFERFMNLEE-----------KKKLLIFPRYHQLDVV  283

Query  294  NQLVTTARAEGPGHKYLIQHSAGSGKSNSIAWTAHRLASLHDDQDQRVFDSVIVITDRTV  353
            ++L++ ++ +GPG +YLIQHSAGSGKSNSIAW A +LASLH ++DQ ++ SVIV+TDRTV
Sbjct  284  KKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTDRTV  343

Query  354  LDDQLQETIYQFEHAEGVVCRISRDEGEGSKSAQLAEALMGNTRIIIVTLQTFPFVLEAI  413
            LD QLQ+T+  FEH+ G V  I    G+   S +L  A+ ++ +III TLQ FP + + I
Sbjct  344  LDRQLQNTLMSFEHTVGQVETI----GDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEI  399

Query  414  QQQTSLKERRFAVIADEAHSSQTGATARKLRQVLMA-----------DELEEDAEISAED  462
            ++ ++   R FA++ DEAHSSQTG++A+KL++ L             +E  ED  +  +D
Sbjct  400  DNTAG---RSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQD  456

Query  463  VLDATLAARSQAHNISYFAFTATPKAKTLQLFGRPPDPNQEPGPDNLPEAFHVYTMQQAI  522
             +  TL +++Q +N+S+FAFTATPK KT+++FG     +Q  G+ +   +FH+Y+M+QAI
Sbjct  457  QIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFG----TKQADGSYH---PFHIYSMRQAI  509

Query  523  EEGFILDVLKRYTTYSMAFRLEQKQAAEEAVDKGKAATRLYQWVKLHPYNIEQKVQVIVE  582
            EEGFIL+VL+ Y TY+ ++++ +    +  + K  A   + +   LHP  + QK ++++E
Sbjct  510  EEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMIE  569

Query  583  HFRQHVAAQLSRQAKAMVVTDSRKAAVRYKLALDKYVTEHGYTDVHALVAFSGDVEDKES  642
            +FR      +  ++KAM+VT SR  AVRY   + KY+ E GYTD++ LVAFSG VED   
Sbjct  570  QFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVED---  626

Query  643  GASVDGGAFNERNMNPG-----LKGRDLRDAFDTDEYQVMIVANKFQTGFDQPKLCAMYV  697
                DG  + E +MN       ++  +L++AF++++++++IVA+K+QTGFD+P L +M+V
Sbjct  627  ----DGIEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFV  682

Query  698  DKKLSGVDCVQTLSRLNRTYPGKEDPFVLDFVNKPEDVLAAFKPYYRTAELEDVSDPNLI  757
            DK+L GV  VQTLSRLNRT PGK D F+LDFVN +E++  AF+P+Y ++ L +  + NLI
Sbjct  683  DKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININLI  742

Query  758  YDLQEKLESERIFRWEEVEAFADAFFDPKKTQD-----KLNYHVRPAVDRYRE  805
            YD Q KL   +I+  +++++      ++K+ Q+     +L+  +RP + RY +
Sbjct  743  YDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLLGRLSSVLRPVISRYSD  795

48) M635_08100 in NC_021834


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  512 bits (1933),  Expect = 4e-146, Method: Compositional matrix adjust.
 Identities = 370/909 (41%), Positives = 600/909 (67%), Gaps = 59/909 (6%)

Query  28   NENYDKNLCLDVELFENFLQATQSVALEELKKRCGQNYKKE----LFDRIFSQIKTKGIV  83
            + +YD N+ LD  ++ +F++ TQ+       KR    Y+ +    ++ R+  +I   GI+
Sbjct  33   DTHYDANIALDPTVLLEFVKQTQPKNW----KRYVSIYRTNAEQKFLKRLNEEITNHGIL  88

Query  84   KALQGYVEIKGIKIYLAFAKPNTNANEESVKKYEQNSLSIIRQLHYSTQNKNSLDIVIFL  143
              L+  +  +G+ + + + +P ++ N E++K+YE N +  +RQ++YS + +N++D+V+ +
Sbjct  89   HVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEANRFQCVRQFQYSNKYRNTIDMVLMI  148

Query  144  NGLPLITIELKNHFTGQNVFHAIKQYKKDRNPKEAIFNYT---IVHFALDHDLCYMSTKL  200
            NG+PL+++ELKN++TGQNV HA  Q+ +DR+PKE IF++    +V FA+DH    M+TKL
Sbjct  149  NGIPLVALELKNQYTGQNVEHARLQFEQDRDPKELIFQFNSRFLVYFAVDHFNVLMTTKL  208

Query  201  DQDATIFLPFNLGLNNGSGKIGLANGAGNPP-SDGIKTAYLWEKIFKKDTLLNLFFNFVQ  259
             ++ T FLPF+ G +NG+G++G   GAGNP+ + G  T+YLWE+++    LL++F  F++
Sbjct  209  AKGNTYFLPFDQG-SNGPGRVG---GAGNPSNPSGYPTSYLWENVLTSYQLLDIFERFMN  264

Query  260  VVKKKNEEIIIFPRYHQFDVVEKLLAHAKENGTGQRYLIQHSAGSGKSNSISWLAHNLVS  319
            +  KK+  ++IFPRYHQ+DVV KL+++++++G G+ YLIQHSAGSGKSNSI+WLA +L S
Sbjct  265  LEEKKK--LLIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLAS  322

Query  320  LHRLE-KNIFDSIIVVTDRKVLDSQIRENVKSFSQTKNLVEAITHG--SKQLKNALEEGK  376
            LH  E + I+ S+IVVTDR VLD Q+++ + SF +T   VE+I +   S++LK A+++ K
Sbjct  323  LHSNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETIGDNKTSQDLKTAINDQK  382

Query  377  KIIITTIQKFPFILDEIKTLKSKTFAIIIDEAHSSQSGSNAQKMAEAIRDKSGD------  430
            KIIITT+QKFP I DEI    +++FAI++DEAHSSQ+GS+AQK+ +A+ DK +       
Sbjct  383  KIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQE  442

Query  431  -----ESQNLDDE--ILEIIKNKKLQSNASYFAFTATPKPKTLEMFGMPCDVNGEQRFIP  483
                 E Q+LDD+  I++ + ++  + N S+FAFTATPK KT+EMFG     +++  + P
Sbjct  443  FEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTK---QADGSYHP  499

Query  484  FHLYSMKQAMEEGFILDVLKGYTTYKSYYKIISCTNDNPKYDKKRASTKLKAYVQNNIKT  543
            FH+YSM+QA+EEGFIL+VL+ Y TY++ YKI    +++P   K  A   +  Y   +   
Sbjct  500  FHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWV  559

Query  544  IEQKSQIMCEHFFQNSFKKINGKAKAMIVTSSRENAVKYYLVFREYLR-KNYPHFKAIVA  602
            + QK++IM E+F   + K ++G++KAMIVT+SR +AV+Y   F+ Y++ K Y +   +VA
Sbjct  560  LRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVA  619

Query  603  FSGEVNLEGEIYSESALN------GFAENVLKDEFKKDEYRFLIVAEKYQTGFDEPLLHT  656
            FSG V+ +G  Y+E+ +N       + EN LK+ F  +++ +LIVAEKYQTGFDEPLLHT
Sbjct  620  FSGTVEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHT  679

Query  657  MYVDKALSGVSAVQTLSRLNRTCKNKENTFVLDFVNTHEDIAKSFSVFYEQTYLSEATDD  716
            M+VDK L GV AVQTLSRLNRT   K +TF+LDFVNT E+I  +F  FYE T L E  + 
Sbjct  680  MFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEINI  739

Query  717  NRIFDLKANLNEYEIYTQEEIDD---FANAILRKEKENIIHAKLDIML----DRFNQKSD  769
            N I+D +++L  ++IY +++I+    +     +K++++++ ++L  +L     R+++ ++
Sbjct  740  NLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLL-GRLSSVLRPVISRYSDLPE  798

Query  770  DEKLDFYNKAKTYLKEYSFLAQILPyedieleklyillkklaskiilpkSEDLAKGILDN  829
            D + DF    + + K Y+++AQI    D EL    I+   L   I   + + +  +I D+
Sbjct  799  DVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFTGFLLKFIPEKQRNYI--DIEDK  856

Query  830  VDFDSYRLQLDKTQDIVLQG----NGELKPSFADGSSKSVEAELEELSNIIKDFNNKYAN  885
            V ++ Y+LQ D   DI L      NG+L  +    ++   E E + L++II  +N++++N
Sbjct  857  VKLEYYKLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPN  916

Query  886  IDFNESDKI  894
             DF ++D++
Sbjct  917  -DFTQGDRV  924

49) Mbar_A1014 in NC_007355


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  511 bits (1927),  Expect = 1e-145, Method: Compositional matrix adjust.
 Identities = 405/991 (41%), Positives = 644/991 (65%), Gaps = 67/991 (6%)

Query  1    MLFDFLRTTQPETWDEFKK--RRGPRHRELFLERLQKQIDRRGVLDLLRKGIKDSGCHFK  58
            +L++F++ TQP  W  +    R  + ++  FL RL+ +I  +G+L++LRKGI+D G  FK
Sbjct  46   VLLEFVKQTQPKNWKRYVSIYRTNAEQK--FLKRLNEEITNHGILHVLRKGIRDRGVSFK  103

Query  59   LAYFKPESDLNEEHRRLYNGNIFSVVRQLHYSKKEPLLSLDLALFLNGFPVVTAELKNPL  118
            + YF+P S LN E+ + Y++N F  VRQ++YS+K    ++D+ L +NG+P+V+ ELKN  
Sbjct  104  VVYFQPASSLNTENIKNYEANRFQCVRQFQYSNKYRN-TIDMVLMINGIPLVALELKNQY  162

Query  119  KDQNVQDAVKQYRDTRNQNEPLFKLGRCF-AHFAVDPDLVFMTTELKGSYTDFLPFnrgr  177
             +QNV++A  Q+ + R+ +E +F++   F   FAVD   V+MTT L  + T FLPF++G 
Sbjct  163  TGQNVEHARLQFEQDRDPKELIFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGS  222

Query  178  ngg-----agnpdnpngYRTFYLWKRVWQKDQMLEIIQNFLQFVKEEKEGRTgknkkdgk  232
            NG      AGNP NP+GY T YLW  V    Q+L+I++ F+++  EEK            
Sbjct  223  NGPGRVGGAGNPSNPSGYPTSYLWENVLTSYQLLDIFERFMNL--EEKK-----------  269

Query  233  dgkekkIVRKFIFPRYHQLYSVKNLVTHAKYHGTGYNYLIQHSAGSGKSNTIAWLCLQLC  292
                    + +IFPRYHQL  VK+L+++++ HG G NYLIQHSAGSGKSN+IAWL  +L 
Sbjct  270  --------KLLIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLA  321

Query  293  GLHDTENKRVFDSIIVVTDRRVLDRQLQETITQFEHVKGTVATIKKDKA-KSLTAALQEG  351
            +LH  E++ ++ S+IVVTDR VLDRQLQ+T+  FEH  G V TI  +K+ + L +A+++ 
Sbjct  322  SLHSNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETIGDNKTSQDLKTAINDQ  381

Query  352  KDIIICTLQTFPFAVNAISEMSGKHFAVVVDEAHSSQSGEGADSVKKILGS--Adlesde  409
            K III TLQ FP   + I + +G+ FA++VDEAHSSQ+G +A+ +K  L+   A L   +
Sbjct  382  KKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQ  441

Query  410  qeeepeddedLVNQ-RVEAELKHKGRLPNVSffaftatpktktLELFGTQQPDGSYEPFS  468
            + EE+ +D+ L +Q ++   L  +G+  N+SFFAFTATPK KT+E+FGT+Q+DGSY+PF 
Sbjct  442  EFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFH  501

Query  469  LYTMKQAIEEKFILDVLENYTTFKVYFNLLKTIEDDPRYSKKKGMHLLKAYVDNHDHSIR  528
            +Y+M+QAIEE FIL+VL+NY T++  +++ K+IE+DP  +K  +++ +  Y   H   +R
Sbjct  502  IYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLR  561

Query  529  TKTVIIVENFREQVMHRIDGQAKAMLVTKSRASAVKYKLAFDRYIKTHEYP-FKALVAFS  587
             K+ I++E+FR      ++G++KAM+VT SR  AV+Y   F +YIK   Y     LVAFS
Sbjct  562  QKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFS  621

Query  588  GTVQDGETGREFTEAIMN------GFSESQTAEVFKREEYRILIVANKFQTGFDQPLLYA  641
            GTV+D+  G E+TE+ MN       + E+Q  E F  E++ +LIVA+K+QTGFD+PLL +
Sbjct  622  GTVEDD--GIEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHT  679

Query  642  MYVDKRLGGVNAVQTLSRLNRKYPDKEDTMVLDFENEADLIQRSFQPYYEKTLLTEATDP  701
            M+VDKRL GV+AVQTLSRLNR  P+K DT +LDF N A+ I  +FQP+YE T L E  + 
Sbjct  680  MFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEINI  739

Query  702  NKLYDFEYELKEYHIFEEEDVETFAREYFSPKGKQE-----KLHSILSPVVDRYLAKPKE  756
            N +YD +  L+ +HI++++D++T  +    +K KQ+     +L S+L PV+ RY   P +
Sbjct  740  NLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLLGRLSSVLRPVISRYSDLPED  799

Query  757  KQHDFRTLAKRYVRLYSYLSHVIPFKDVDLEKLYQFLRHLHRKLPVSRDRLPVEITENIN  816
             Q DFR   + + + Y+Y++++    D +L     F   L + +P  ++R  ++I ++++
Sbjct  800  VQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFTGFLLKFIP-EKQRNYIDIEDKVK  858

Query  817  MDSYRIQQTSNGKIALADEE---GKLGpsrepenfsepeeeLTPLSIIIQEINERFGDID  873
            ++ Y++Q+  +G IAL +E+   G+L+ + E +    PEEE  +L+ II+ INERF + D
Sbjct  859  LEYYKLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPN-D  917

Query  874  FTDADRLRYFSEDMERRLVENENLARAANPEINTKDNF-KLIYNDYFDDILNDMIDSNFD  932
            FT++DR+  +  +M   L++N +      ++ N+ + F + ++++ F+D+L D  +    
Sbjct  918  FTQGDRV--LVKNMRETLINNTDAKLVNMAQNNSEEMFANSLFQQQFQDFLIDQYNQGEA  975

Query  933  LYTKI-NDDRDFGNIFRKALFESVYRHLTKG  962
             Y+K+ +++RDF        +++VY+ L+K+
Sbjct  976  AYSKMFSNNRDF--------YDTVYQLLAKD  998

50) CJJ81176_0780 in NC_008787


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  509 bits (1919),  Expect = 5e-145, Method: Compositional matrix adjust.
 Identities = 371/909 (41%), Positives = 599/909 (66%), Gaps = 59/909 (6%)

Query  28   NENYDKNLCLDVELFENFLQATQSVALEELKKRCGQNYKKE----LFDRIFSQIKAKGIV  83
            + +YD N+ LD  ++ +F++ TQ+       KR    Y+ +    ++ R+  +I   GI+
Sbjct  33   DTHYDANIALDPTVLLEFVKQTQPKNW----KRYVSIYRTNAEQKFLKRLNEEITNHGIL  88

Query  84   KALQGYVEIKGIKIYLAFAKPNTNANEESVKKYEQNTLSIIRQLYYSTQNKNSLDIVIFL  143
              L+  +  +G+ + + + +P ++ N E++K+YE N +  +RQ+ YS + +N++D+V+ +
Sbjct  89   HVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEANRFQCVRQFQYSNKYRNTIDMVLMI  148

Query  144  NGLPLITIELKNHFTGQNVFHAIKQYKKDRNPKEAIFNYT---IVHFALDHDLCYMSTKL  200
            NG+PL+++ELKN++TGQNV HA  Q+ +DR+PKE IF++    +V FA+DH    M+TKL
Sbjct  149  NGIPLVALELKNQYTGQNVEHARLQFEQDRDPKELIFQFNSRFLVYFAVDHFNVLMTTKL  208

Query  201  DQDATTFLPFNLGLNNGSGKIGLANGAGNPP-SDGIKTAYLWEKIFKKDTLLNLFFNFVQ  259
             ++ T FLPF+ G +NG+G++G   GAGNP+ + G  T+YLWE+++    LL++F  F++
Sbjct  209  AKGNTYFLPFDQG-SNGPGRVG---GAGNPSNPSGYPTSYLWENVLTSYQLLDIFERFMN  264

Query  260  VVKKKNEEIIIFPRYHQFDVVEKLLAHAKENGTGQRYLIQHSAGSGKSNSISWLAHNLVS  319
            +  KK+  ++IFPRYHQ+DVV KL+++++++G G+ YLIQHSAGSGKSNSI+WLA +L S
Sbjct  265  LEEKKK--LLIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLAS  322

Query  320  LHRLE-KNIFDSIIVVTDRKVLDSQIRENVKSFSQTKNLVEAITHG--SKQLKNALEEGK  376
            LH  E + I+ S+IVVTDR VLD Q+++ + SF +T   VE+I +   S++LK A+++ K
Sbjct  323  LHSNEDQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETIGDNKTSQDLKTAINDQK  382

Query  377  KIIITTIQKFPFILDEIKTLKSKTFAIIIDEAHSSQSGSNAQKMAEAIRDKSGD------  430
            KIIITT+QKFP I DEI    +++FAI++DEAHSSQ+GS+AQK+ +A+ DK +       
Sbjct  383  KIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQE  442

Query  431  -----ESQNLDDE--ILEIIKNKKLQSNASYFAFTATPKPKTLEMFGMPCDVNGEQRFIP  483
                 E Q+LDD+  I++ + ++  + N S+FAFTATPK KT+EMFG     +++  + P
Sbjct  443  FEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTK---QADGSYHP  499

Query  484  FHLYSMKQAIEEGFILDVLKGYTTYKSYYKIISCTNDNPKYDKKRANTKLKAYVQNNIKT  543
            FH+YSM+QAIEEGFIL+VL+ Y TY++ YKI    +++P   K  A   +  Y   +   
Sbjct  500  FHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWV  559

Query  544  IEQKSQIMCEHFFQNSFKKINGKAKAMIVTSSRENAVKYYLVFREYLR-KNYPHFKAIVA  602
            + QK++IM E+F   + K ++G++KAMIVT+SR +AV+Y   F+ Y++ K Y +   +VA
Sbjct  560  LRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVA  619

Query  603  FSGEVNLEGEIYSESGLN------GFAENVLKDEFKKDEYRFLIVAEKYQTGFDEPLLHT  656
            FSG V+ +G  Y+E+ +N       + EN LK+ F  +++ +LIVAEKYQTGFDEPLLHT
Sbjct  620  FSGTVEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHT  679

Query  657  MYVDKALSGVSAVQTLSRLNRTCKNKENTFVLDFVNTHEDIAKSFSVFYEQTYLSEATDD  716
            M+VDK L GV AVQTLSRLNRT   K +TF+LDFVNT E+I  +F  FYE T L E  + 
Sbjct  680  MFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEINI  739

Query  717  NRIFDLKANLNEYEIYTQEEIDD---FANAILRKEKENIIHAKLDIML----DRFNQKSD  769
            N I+D +++L  ++IY +++I+    +     +K++++++ ++L  +L     R+++ ++
Sbjct  740  NLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLL-GRLSSVLRPVISRYSDLPE  798

Query  770  DEKLDFYNKAKTYLKEYSFLAQILPyedieleklyillkklaskiilpkSEDLAKGILDN  829
            D + DF    + + K Y+++AQI    D EL    I+   L   I   + + +  +I D+
Sbjct  799  DVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFTGFLLKFIPEKQRNYI--DIEDK  856

Query  830  VDFDSYRLQLDKTQDIVLQG----NGELKPSFADGSSKSVEAELEELSNIIKDFNNKYAN  885
            V ++ Y+LQ D   DI L      NG+L  +    ++   E E + L++II  +N++++N
Sbjct  857  VKLEYYKLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPN  916

Query  886  IDFNESDKI  894
             DF ++D++
Sbjct  917  -DFTQGDRV  924

51) TVNIR_1050 in NC_019902


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  507 bits (1913),  Expect = 1e-144, Method: Compositional matrix adjust.
 Identities = 320/799 (41%), Positives = 514/799 (65%), Gaps = 61/799 (7%)

Query  2    MADSREARFQQDIIDAMTA-DGWLTA--PASGYDAADALYTEDLVAYLQEAWPQRWEKFA  58
            +  ++E  F+QDI  ++   +GW +     + YDA  AL    L+ +++++ P+ W ++ 
Sbjct  4    VIKNKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYV  63

Query  59   AKNPQDPQKALVRAVTRELERGGTLEVLRHGVKTPGVKLELCSFRPDHEMNPESVARYRA  118
            +    ++++ +++ +  E+   G L+VLR G++  GV + +  F+P   +N E++  Y A
Sbjct  64   SIYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEA  123

Query  119  NRLRVVPEVSYSPHARSGEYNPRLDLVLFVNGIPTATLELKSEFK-QSVENAKRQYRLDR  177
            NR++ V +  YS       Y   +D+VL +NGIP  +LELK+++  Q+VE+A+ Q+  DR
Sbjct  124  NRFQCVRQFQYS-----NKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDR  178

Query  178  PVKDPVTRKLEPLLTFRRGALVHFAVSQDEVAMTTRLNGKDTVFLPFNQGTEDGG--AGN  235
              K+ +       + F    LV FAV + +V MTT+L   +T FLPF+QG+++ G  +G 
Sbjct  179  DPKELI-------FQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGA  231

Query  236  PTPPDRDSYATGYLWQRVFQPDAWLRITGRFLHLEQKTEEDFHGKRRKKEALIFPRFHQW  295
              P++  +Y+T+YLW+ V+ +   L I  RF++LE+K           K  LIFPR+HQ 
Sbjct  232  GNPSNPSGYPTSYLWENVLTSYQLLDIFERFMNLEEK-----------KKLLIFPRYHQL  280

Query  296  DVVNRLIEATREEGAGQRYLIQHSAGSGKSNSIAWIAHQLAALYDDAGGKLFNSVVVVTD  355
            DVV++LI  T+++G+G+ YLIQHSAGSGKSNSIAW+A +LA+L  + +  +++SV+VVTD
Sbjct  281  DVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTD  340

Query  356  RTVLDSQLQDTIYQFDHAHGVVRPITRDVGSQSKSEQLAGALAEQTRIIIVTIQTFPALF  415
            RTVLD QLQ+T+  F+H+ G V  I    G +  S++L  A+ +Q +III T+Q FP ++
Sbjct  341  RTVLDRQLQNTLMSFEHTVGQVETI----GDNKTSQDLKTAINDQKKIIITTLQKFPVIY  396

Query  416  DALDRRPDLAAGR-YAVIADEAHSSQTGSSATKLKAILGT------------DMPEDEEI  462
            D +D     +AGR +A++ DEAHSSQTGSSA KLK  L+             +  ED+ +
Sbjct  397  DEIDN----TAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSL  452

Query  463  SAEELLDAAVAARKPAERISYYAFTATPKAKTLELFGRPPNPERPASKDNKPEPFHLYSM  522
              ++ +  ++ ++   + +S++AFTATPK KT+E+FG           D   +PFH+YSM
Sbjct  453  DDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQA-------DGSYHPFHIYSM  505

Query  523  RQAIEEGFILDVLKNYTTYSTAWKLAHPHGDDQEVESRKASTRIARWVRLHPYNIAQRVE  582
            RQAIEEGFIL+VL+NY TY+T+ K+A +  +D E+    A   IA+   LHP  + Q+ E
Sbjct  506  RQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAE  565

Query  583  VIVEHFRANVRHLLDGQAKAMVVTGSRQEAVRYMLAMREYIQDRGYPGIHALVAFSGTVL  642
            +++E+FR+  +  ++G++KAM+VT+SR +AVRYM   + YI+++GY +++ LVAFSGTV 
Sbjct  566  IMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVE  625

Query  643  PDDVIPEEVTETSALLNPG--LKGRDLAEAFDTAEFNVMIVANKFQTGFDQPRLCAMYVD  700
             D++  E       L ++G  ++  +L EAF++ +FN++IVA+K+QTGFD+P L +M+VD
Sbjct  626  DDGI--EYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFVD  683

Query  701  KKLQGVDCVQTLSRLNRIFPGKENTFVLDFFNDAEDVLAAFRPYYNKAELADVSDPNVVY  760
            K+L+GV  VQTLSRLNR  PGK +TF+LDF N AE++  AF+P+Y+ + L +  + N++Y
Sbjct  684  KRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININLIY  743

Query  761  DLQKSLDAAGIYHWDEVEN  779
            D Q  L    IY+ D+++ 
Sbjct  744  DTQSKLRKFHIYNDDDIQT  762


 Score = 47.1 bits (159),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 38/167 (23%), Positives = 95/167 (57%), Gaps = 4/167 (2%)

Query  855   FRKNLQSFVRSYEFLSQIVDFDDRELEQLCVYARALHPLLRIENLEEDPIDVDE-LELTH  913
             FR  L++F + Y++++QI    D+EL +  +++  L  +  I + + + ID+++ + L  
Sbjct  804   FRVTLRNFNKWYNYIAQIDRTFDKELLEESIFTGFLLKF--IPEKQRNYIDIEDKVKLEY  861

Query  914   YRLNKRAEHRLNLAEEGGDYSGLKPVTDVGSGKPHDPEKKRLSEIIDQLNELFGAEVSDA  973
             Y+L+      + L +E+ + + L   ++V +    + E   L+EII+++NE F  + +++
Sbjct  862   YKLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPNDFTQG  921

Query  974   DKLQFANGIADRIRRDDAVMAQVENHSPDQVM-HGLFPKRVTDTVLD  1019
             D++   N     I   DA + ++ +++++++  ++LF ++  D ++D
Sbjct  922   DRVLVKNMRETLINNTDAKLVNMAQNNSEEMFANSLFQQQFQDFLID  968

52) BN865_13620c in NC_022132


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  505 bits (1903),  Expect = 9e-144, Method: Compositional matrix adjust.
 Identities = 340/807 (43%), Positives = 545/807 (68%), Gaps = 56/807 (6%)

Query  28   NENFDKNLCIDTEFFENFLQATQSVALEELKKRCGQNYKKE----LFDRIFSQIKTKGIV  83
            + ++D N+ +D   + +F++ TQ+       KR    Y+ +    ++ R+  +I   GI+
Sbjct  33   DTHYDANIALDPTVLLEFVKQTQPKNW----KRYVSIYRTNAEQKFLKRLNEEITNHGIL  88

Query  84   KALQGYVEIKGIKFYLAFAKPNTNANAQSLRNYEQNTLSIIRQLYYSTQNKNSIDMVLFL  143
              L+  +  +G+ F + + +P ++ N+++++NYE N +  +RQ+ YS + +N+IDMVL +
Sbjct  89   HVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEANRFQCVRQFQYSNKYRNTIDMVLMI  148

Query  144  NGLPLITIELKNHFTGQNVFHAIEQYKKDRNPKETLF---NHTIVHFALDHDLCYMSTRL  200
            NG+PL+++ELKN++TGQNV HA  Q+ +DR+PKE +F   ++ +V FA+DH    M+T+L
Sbjct  149  NGIPLVALELKNQYTGQNVEHARLQFEQDRDPKELIFQFNSRFLVYFAVDHFNVLMTTKL  208

Query  201  DQSATTFLPFNLGLNNGSGKIGLANGAGNPP-SDGIKTAYLWEKIFKKDTLLNLLFNFVQ  259
             ++ T FLPF+ G +NG+G++G   GAGNP+ + G  T+YLWE+++    LL+++  F++
Sbjct  209  AKGNTYFLPFDQG-SNGPGRVG---GAGNPSNPSGYPTSYLWENVLTSYQLLDIFERFMN  264

Query  260  VIKKENKEIIIFPRYHQFDVVEKLLAHAKEKGAGQRYLIQHSAGSGKSNSISWLAHHLVS  319
            +   E+K ++IFPRYHQ+DVV KL++++++ G+G+ YLIQHSAGSGKSNSI+WLA HL S
Sbjct  265  L--EEKKKLLIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLAS  322

Query  320  LHKLEENSFKNIFDSIIVVTDRKVLDSQIRENVKAFSHTKNLVEVITHG--SKQLKEALE  377
            LH  E+++   I+ S+IVVTDR VLD Q+++ + +F HT   VE I +   S++LK A++
Sbjct  323  LHSNEDQP---IYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETIGDNKTSQDLKTAIN  379

Query  378  EGKKIIITTIQKFPYILNEVKSLKSKTFAIIIDEAHSSQSGSNAQKMAEAIRDKSGD---  434
            + KKIIITT+QKFP I +E+ +  +++FAI++DEAHSSQ+GS+AQK+ +A+ DK +    
Sbjct  380  DQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKE  439

Query  435  --------ESQNLEDE--ILEIIKSKKLQPNASYFAFTATPKPKTLEMFGMPCEVDEGQK  484
                    E Q+L+D+  I++ + S+  + N S+FAFTATPK KT+EMFG     + +  
Sbjct  440  YQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTK---QADGS  496

Query  485  FIPFHLYSMKQAIEEGFILDVLKGYTTYKSYYKIISCTNDNPKYDKKRANAKLKAYVQNN  544
            + PFH+YSM+QAIEEGFIL+VL+ Y TY++ YKI    +++P   K  A   +  Y   +
Sbjct  497  YHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLH  556

Query  545  IRTIEQKSQIMCEHFFQNSFKKINGKAKAMIVTSSRENAVKYYLVFREYLR-KNYPHFKT  603
             + + QK++IM E+F   + K ++G++KAMIVT+SR +AV+Y   F+ Y++ K Y +   
Sbjct  557  PWVLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDV  616

Query  604  IVAFSGEINLEGEIYSESGLN------GFSEGVLKDEFKKDEYRFLIVAEKYQTGFDEPL  657
            +VAFSG ++ +G  Y+E+ +N       + E  LK+ F  +++ +LIVAEKYQTGFDEPL
Sbjct  617  LVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPL  676

Query  658  LHTMYVDKTLSGVSAVQTLSRLNRTCKNKEDTFVLDFANTHEDIAKAFSVFYEQTYLNEP  717
            LHTM+VDK L GV AVQTLSRLNRT   K DTF+LDF NT E+I  AF  FYE T L+E 
Sbjct  677  LHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEE  736

Query  718  TDDNRIFDLKANLSEYEIYTQEEIDDFTNAILGRE----KENVIHSKLDIML----ARFD  769
             + N I+D +++L  ++IY +++I+  T   L R+    +++ + ++L  +L    +R+ 
Sbjct  737  ININLIYDTQSKLRKFHIYNDDDIQ--TVMKLNRQAKQKQNDQLLGRLSSVLRPVISRYS  794

Query  770  EKSDDEKLDFYSKAKTYLKEYSFLAQI  796
            + ++D + DF    + + K Y+++AQI
Sbjct  795  DLPEDVQYDFRVTLRNFNKWYNYIAQI  821

53) PSPA7_0077 in NC_009656


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  505 bits (1903),  Expect = 9e-144, Method: Compositional matrix adjust.
 Identities = 331/800 (42%), Positives = 518/800 (65%), Gaps = 58/800 (7%)

Query  1    MADSKEAQFQQDIITAMVA-QGWLTG--PASGYDRRTALYTEDFLGYFKDAWPERWDKFA  57
            +  +KE +F+QDI +++V   GW +     + YD   AL    +L + K++ P  W ++ 
Sbjct  4    VIKNKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYV  63

Query  58   KANPNNPESVLVQKLVRELEQDGTLDVLRHGFKLPGVKIEACSFKPDHGMNPDTLKRYQC  117
                 N+E  ++++L  E+ ++G L+VLR G++  GV +    F+P  ++N + +K Y+ 
Sbjct  64   SIYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEA  123

Query  118  NRLRVVQEVSYSPHCREGEYNPRLDLVLFVNGIPVATLELKSEFK-QSVENAKRQYRYDR  176
            NR++ V++  YS   R+      +D+VL +NGIP+ +LELK+++  Q+VE+A+ Q+  DR
Sbjct  124  NRFQCVRQFQYSNKYRNT-----IDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDR  178

Query  177  PVKDPLTRKPEPLLTFKRGALVHFAVSQDEVAMTTQLAGKETFFLPFNLGSLD----GGA  232
              K       E ++ F+   LV FAV + +V MTT+LA  +T+FLPF+ GS +    GGA
Sbjct  179  DPK-------ELIFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGA  231

Query  233  GNPPAPDDSQYATGYLWQRLFQPDAWLKVLGRFLHLQKSVKEDADGKRVTKETLIFPRYH  292
            GNP+ P  S Y+T+YLW+ ++ +   L ++ RF++L+             K  LIFPRYH
Sbjct  232  GNPSNP--SGYPTSYLWENVLTSYQLLDIFERFMNLEEK-----------KKLLIFPRYH  278

Query  293  QWEVVNRLIETTRNEGPGKRYLIQHSAGSGKSNSIAWTAHQLASLYDAEGQRLFNSVIVI  352
            Q +VV++LI  T+++GPGK YLIQHSAGSGKSNSIAW A +LASL   E+Q +++SVIV+
Sbjct  279  QLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVV  338

Query  353  TDRTVLDKQLQDTIYQFEHAQGVVKCITRDIGSQSKSEQLAEALAEQTRIIIVTIQTFPA  412
            TDRTVLD+QLQ+T+  FEH+ G V  I    G +  S++L  A+ +Q +III T+Q FP 
Sbjct  339  TDRTVLDRQLQNTLMSFEHTVGQVETI----GDNKTSQDLKTAINDQKKIIITTLQKFPV  394

Query  413  LFDALDKYPKLASGHYAVIADEAHSSQTGSSASKLKQILGSDAV-------LGKEGDAEE  465
            ++D +D+    A+  +A++ DEAHSSQTGSSA KLK+ L+           +    + + 
Sbjct  395  IYDEIDN---TAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQS  451

Query  466  ISAEELLDAAVAARAPNERISYYAFTATPKAKTLELFGRVPDPTLPASADNKPEAFHLYS  525
            +  ++ +  ++ +++ ++ +S++AFTATPK KT+E+FG          AD   ++FH+YS
Sbjct  452  LDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFG-------TKQADGSYHPFHIYS  504

Query  526  MRQAIEEGFILDVLQNYTTYSTAWKIAHPDGDDEEVDSKKARMKLARWVRLHPYNINQKV  585
            MRQAIEEGFIL+VLQNY TY+T+ KIA +  +D E+    A   +A+   LHP  + QK 
Sbjct  505  MRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKA  564

Query  586  EVIVGHFRANIRHLLGGQAKAMVVTSSRQEAVRYQLAVQAYVKQMGYTDVHPLVAFSGSV  645
            E+++ +FR+  +  + G++KAM+VT+SR +AVRY    + Y+K+ GYTD++ LVAFSG+V
Sbjct  565  EIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTV  624

Query  646  LPDGVIPEEVTESSSLLNPG--LNGRDLAEAFDTQDFNVMIAANKYQTGFDQPKLCAMYV  703
              DG+  E      +L ++G  ++  +L EAF+++DFN++I A+KYQTGFD+P L +M+V
Sbjct  625  EDDGI--EYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFV  682

Query  704  DKKLQGVDCVQTLSRLNRTFGDSKPTFILDFFNDPQDILDAFLPYYTKAELTDVTDPQLI  763
            DK+L+GV  VQTLSRLNRT  +   TFILDF N +++I +AF P+Y  + L +  + +LI
Sbjct  683  DKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININLI  742

Query  764  YDLQKKLDAEGIYHWEEVAA  783
            YD Q KL    IY+ +++ +
Sbjct  743  YDTQSKLRKFHIYNDDDIQT  762


 Score = 40.6 bits (134),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 34/172 (20%), Positives = 92/172 (54%), Gaps = 3/172 (1%)

Query  859   FKKNLQSFVRLYEFLSQIIPYEDRELEQLCVYAKHLHPLLRVDRLDQEDVDVGELQLTHY  918
             F+  L++F + Y++++QI    D+EL +  +++  L  ++   + +  D++ + ++L  Y
Sbjct  804   FRVTLRNFNKWYNYIAQIDRTFDKELLEESIFTGFLLKFIPEKQRNYIDIE-DKVKLEYY  862

Query  919   RLTKRAEHQLRLSEEQGDYG-LKPPTGLGSGKPHDPEKKRLSEIIEALNDIFGAEVSDED  977
             +L      ++ L +E+ + G L  P+ + +    + E   L+EII+ +N+ F  + ++ D
Sbjct  863   KLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPNDFTQGD  922

Query  978   QLQFLTGIANRISRQEDVMAQVNNHSVEQVM-HGLFPKRVLDTVLDAMTDNE  1028
             ++         I+  +  + ++ +++ E++  ++LF ++  D ++D   + E
Sbjct  923   RVLVKNMRETLINNTDAKLVNMAQNNSEEMFANSLFQQQFQDFLIDQYNQGE  974

54) PSTAA_0898 in NC_017532


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  502 bits (1892),  Expect = 7e-143, Method: Compositional matrix adjust.
 Identities = 333/806 (42%), Positives = 517/806 (65%), Gaps = 70/806 (8%)

Query  1    MADSKEAQFQQDIITAMVA-QGWLTG--PASGYDRRTALYTEDFLGYFKDAWPERWDKFA  57
            +  +KE +F+QDI +++V   GW +     + YD   AL    +L + K++ P  W ++ 
Sbjct  4    VIKNKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYV  63

Query  58   KANPNNPEGVLVQKLVRELEQDGTLDVLRHGFKLPGVKIEACSFKPDHGMNPDTLKRYQC  117
                 N+E  ++++L  E+ ++G L+VLR G++  GV +    F+P  ++N + +K Y+ 
Sbjct  64   SIYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEA  123

Query  118  NRLRVVPEVSYSPHALETESREGGYNPRLDLVLFVNGIPTATLELKSEFK-QSVENAKRQ  176
            NR++ V +  YS            Y   +D+VL +NGIP  +LELK+++  Q+VE+A+ Q
Sbjct  124  NRFQCVRQFQYSNK----------YRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQ  173

Query  177  YRVDRPVKDPLTRKPEPLLSFKRGALVHFAVSQDEVAMTTKLAGKETFFLPFNLGSLD--  234
            +  DR  K       E ++ F+   LV FAV + +V MTTKLA  +T+FLPF+ GS +  
Sbjct  174  FEQDRDPK-------ELIFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPG  226

Query  235  --GGAGNPPAPDDSQYATGYLWQRLFQPDAWLKVLGRFLHLQKSVKEDPDGKRVTKETLI  292
              GGAGNP+ P  S Y+T+YLW+ ++ +   L ++ RF++L+             K  LI
Sbjct  227  RVGGAGNPSNP--SGYPTSYLWENVLTSYQLLDIFERFMNLEEK-----------KKLLI  273

Query  293  FPRYHQWEVVNRLIETTRTEGPGKRYLIQHSAGSGKSNSIAWTAHQLASLYDAEGQRLFN  352
            FPRYHQ +VV++LI  T+ +GPGK YLIQHSAGSGKSNSIAW A +LASL   E+Q +++
Sbjct  274  FPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYS  333

Query  353  SVIVITDRTVLDKQLQDTIYQFEHAQGVVKCITRDIGSQSKSEQLAEALAEQTRIIIVTI  412
            SVIV+TDRTVLD+QLQ+T+  FEH+ G V  I    G +  S++L  A+ +Q +III T+
Sbjct  334  SVIVVTDRTVLDRQLQNTLMSFEHTVGQVETI----GDNKTSQDLKTAINDQKKIIITTL  389

Query  413  QTFPALFDALDKYPKLASGR-YAVIADEAHSSQTGSSASKLKQILGS------------D  459
            Q FP ++D +D+    ++GR +A++ DEAHSSQTGSSA KLK+ L+             +
Sbjct  390  QKFPVIYDEIDN----TAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEE  445

Query  460  APDAEEISAEELLDAAVAARAPNERISYYAFTATPKAKTLELFGRPANPALPASADNKPE  519
            + + + +  ++ +  ++ +++ ++ +S++AFTATPK KT+E+FG          AD   +
Sbjct  446  SVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFG-------TKQADGSYH  498

Query  520  AFHLYSMRQAIEEGFILDVLQNYTTYSTAWKIAHPDGDDEEVDSKKARMKLARWVRLHPY  579
            +FH+YSMRQAIEEGFIL+VLQNY TY+T+ KIA +  +D E+    A   +A+   LHP 
Sbjct  499  PFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPW  558

Query  580  NISQKVEVIVEHFRANIRHLLGGQAKAMVVTSSRQEAVRYQLAVQAYVKQMGYGDVHPLV  639
             + QK E+++E+FR+  +  + G++KAM+VT+SR +AVRY    + Y+K+ GY D++ LV
Sbjct  559  VLRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLV  618

Query  640  AFSGSVLPDGVIPEEVTESSSLLNPG--LNGRDLAEAFDTQDFNVMIAANKYQTGFDQPK  697
            AFSG+V  DG+  E      +L ++G  ++  +L EAF+++DFN++I A+KYQTGFD+P 
Sbjct  619  AFSGTVEDDGI--EYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPL  676

Query  698  LCAMYVDKKLQGVDCVQTLSRLNRTFGDSKPTFILDFFNDPQDILDAFLPYYTKAELTDV  757
            L +M+VDK+L+GV  VQTLSRLNRT  +   TFILDF N +++I +AF P+Y  + L + 
Sbjct  677  LHTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEE  736

Query  758  TDPQLIYDLQKKLDAEGIYHWEEVTA  783
             + +LIYD Q KL    IY+ +++ +
Sbjct  737  ININLIYDTQSKLRKFHIYNDDDIQT  762


 Score = 39.5 bits (130),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 32/166 (20%), Positives = 89/166 (54%), Gaps = 3/166 (1%)

Query  859   FKKNLQSFVRLYEFLSQIIPYEDRELEQLCVYAKHLHPLLRVDRLDQADVDVGELQLTHY  918
             F+  L++F + Y++++QI    D+EL +  +++  L  ++   + +  D++ + ++L  Y
Sbjct  804   FRVTLRNFNKWYNYIAQIDRTFDKELLEESIFTGFLLKFIPEKQRNYIDIE-DKVKLEYY  862

Query  919   RLTKRAEQQLRLSEEKGDYG-LDPATGLGSGKPHDPEKKRLSEIIEALNDIFGAEVSDED  977
             +L      ++ L +E  + G L  ++ + +    + E   L+EII+ +N+ F  + ++ D
Sbjct  863   KLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPNDFTQGD  922

Query  978   QLQFLTGIANRISRQEDVMAQVNNHSVEQVM-HGLFPKRVLDTVLD  1022
             ++         I+  +  + ++ +++ E++  ++LF ++  D ++D
Sbjct  923   RVLVKNMRETLINNTDAKLVNMAQNNSEEMFANSLFQQQFQDFLID  968

55) K734_03225 in NC_021286


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  499 bits (1882),  Expect = 4e-142, Method: Compositional matrix adjust.
 Identities = 333/801 (42%), Positives = 517/801 (65%), Gaps = 67/801 (8%)

Query  1    MADTKERQFQTDILNSLEK-DGW--LIGSAANYDKANAVYTEDLIDFVKDAYPDRWERFC  57
            +   KE +F+ DI  SL + +GW  +    ++YD   A+    L++FVK++ P  W R+ 
Sbjct  4    VIKNKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYV  63

Query  58   KSNPGDPEKLLVHAAVKGMTRDGALHVLRHGFKAIGGTIKVCAFRPDHGMNPDTERRYQA  117
                 ++E+ ++      +T +G LHVLR G++  G ++KV  F+P  ++N +  + Y+A
Sbjct  64   SIYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEA  123

Query  118  NRLRVVEEVSYSPHAHEGDYNPRIDLVFFVNGIPTATMELKSEFK-QTVEHAKRQYKFDR  176
            NR++ V +  YS       Y   ID+V+ +NGIP  ++ELK+++  Q VEHA+ Q+  DR
Sbjct  124  NRFQCVRQFQYS-----NKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDR  178

Query  177  PVKDPVTRKPEPLLTFKRGALVHFAVSQDEVAMTTKLAGKETFFLPFNLGKEDGA--AGN  234
              K+ +       + F+   LV FAV + +V MTTKLA  +T+FLPF+ G ++ +  +G 
Sbjct  179  DPKELI-------FQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGA  231

Query  235  PQSTSENSYATSYLWERLLNKDAWLKVIGRFMHLEVEEKENFDGRTQKKETLIFPRYHQW  294
             ++++ ++Y+TSYLWE +L     L ++ RFM+LE           +KK  LIFPRYHQ 
Sbjct  232  GNPSNPSGYPTSYLWENVLTSYQLLDIFERFMNLE-----------EKKKLLIFPRYHQL  280

Query  295  DVVNQLIDTTRREGPGSKYLIQHSAGSGKSNSIAWTAHQLSSLYADDGSKLFNSIVVVTD  354
            DVV++LI  T+++GPG +YLIQHSAGSGKSNSIAW A +L+SL ++++  +++S++VVTD
Sbjct  281  DVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTD  340

Query  355  RTVLDSQLQNTIRQFEHADGVVRAITRDVGNKSKSEQLAEALQEQVRIIVVTIQTFPALY  414
            RTVLD QLQNT+  FEH+ G V +I    G++  S++L  A+++Q +II+ T+Q FP +Y
Sbjct  341  RTVLDRQLQNTLMSFEHTVGQVETI----GDNKTSQDLKTAINDQKKIIITTLQKFPVIY  396

Query  415  DAIDKYPALQAGNYAIIADEAHSSQTGASASKLKALLGS------------DRPEGDDIS  462
            D ID+     + ++AI+ DEAHSSQTG+SA KLK  L+             +  E++ + 
Sbjct  397  DEIDN---TAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLD  453

Query  463  AEELLDAAVQARMPNERISYYAFTATPKGKTLELFGRPDDPHSPISDDNKPKAFHVYSMR  522
             ++ +  ++ ++  ++ +S++AFTATPK KT+E+FG  +        D    +FH+YSMR
Sbjct  454  DQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQA-------DGSYHPFHIYSMR  506

Query  523  QAIEEGFILDVLKNYTTYATAWKIAHPEGEDKEVDSKKARIKLAKWVRLHPYNINQRVEI  582
            QAIEEGFIL+VL+NY TY T+ KIA +  ED E+    A   +AK   LHP  + Q+ EI
Sbjct  507  QAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEI  566

Query  583  IVEHFRENVRHLLNGQAKAMVVTGSRQEAVRYQLAMTSYIIEKGYQDVHALVAFSGEVPA  642
            ++E+FR   +  ++G++KAM+VT+SR +AVRY      YI EKGY D++ LVAFSG V  
Sbjct  567  MIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVED  626

Query  643  DDYITESVTEY-DKKLNPGLNG-RKHDKAL----DSDDFNVMIVANKYQTGFDQPKLCAM  696
            D+       EY + K+N   +G R +++ L    +S+DFN++IVA+KYQTGFD+P L +M
Sbjct  627  DG------IEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTM  680

Query  697  YVDKKLQGVECVQTLSRLNRTFPGKDQTFVLDFFNSEEDILESFKPYYTTAELDSVTDPH  756
            +VDK+L+GV  VQTLSRLNRT PGK +TF+LDF N+ E+I E+F+P+Y ++ L    + +
Sbjct  681  FVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININ  740

Query  757  ILFDIMSKLDEEHIYEWSEVE  777
            +++D  SKL   HIY+  +++
Sbjct  741  LIYDTQSKLRKFHIYNDDDIQ  761

56) IL0644 in NC_006512


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  499 bits (1882),  Expect = 4e-142, Method: Compositional matrix adjust.
 Identities = 333/801 (42%), Positives = 517/801 (65%), Gaps = 67/801 (8%)

Query  1    MADTKERQFQTDILNSLEK-DGW--LIGSAANYDKANAVYTEDLIDFVKDAYPDRWERFC  57
            +   KE +F+ DI  SL + +GW  +    ++YD   A+    L++FVK++ P  W R+ 
Sbjct  4    VIKNKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYV  63

Query  58   KSNPGDPEKLLVHAAVKGMTRDGALHVLRHGFKAIGGTIKVCAFRPDHGMNPDTERRYQA  117
                 ++E+ ++      +T +G LHVLR G++  G ++KV  F+P  ++N +  + Y+A
Sbjct  64   SIYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEA  123

Query  118  NRLRVVEEVSYSPHAHEGDYNPRIDLVFFVNGIPTATMELKSEFK-QTVEHAKRQYKFDR  176
            NR++ V +  YS       Y   ID+V+ +NGIP  ++ELK+++  Q VEHA+ Q+  DR
Sbjct  124  NRFQCVRQFQYS-----NKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQFEQDR  178

Query  177  PVKDPVTRKPEPLLTFKRGALVHFAVSQDEVAMTTKLAGKETFFLPFNLGKEDGA--AGN  234
              K+ +       + F+   LV FAV + +V MTTKLA  +T+FLPF+ G ++ +  +G 
Sbjct  179  DPKELI-------FQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPGRVGGA  231

Query  235  PQSTSENSYATSYLWERLLNKDAWLKVIGRFMHLEVEEKENFDGRTQKKETLIFPRYHQW  294
             ++++ ++Y+TSYLWE +L     L ++ RFM+LE           +KK  LIFPRYHQ 
Sbjct  232  GNPSNPSGYPTSYLWENVLTSYQLLDIFERFMNLE-----------EKKKLLIFPRYHQL  280

Query  295  DVVNQLIDTTRREGPGSKYLIQHSAGSGKSNSIAWTAHQLSSLYADDGSKLFNSIVVVTD  354
            DVV++LI  T+++GPG +YLIQHSAGSGKSNSIAW A +L+SL ++++  +++S++VVTD
Sbjct  281  DVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSVIVVTD  340

Query  355  RTVLDSQLQNTIRQFEHADGVVRAITRDVGNKSKSEQLAEALQEQVRIIVVTIQTFPALY  414
            RTVLD QLQNT+  FEH+ G V +I    G++  S++L  A+++Q +II+ T+Q FP +Y
Sbjct  341  RTVLDRQLQNTLMSFEHTVGQVETI----GDNKTSQDLKTAINDQKKIIITTLQKFPVIY  396

Query  415  DAIDKYPALQAGNYAIIADEAHSSQTGASASKLKALLGS------------DRPEGDDIS  462
            D ID+     + ++AI+ DEAHSSQTG+SA KLK  L+             +  E++ + 
Sbjct  397  DEIDN---TAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLD  453

Query  463  AEELLDAAVQARMPNERISYYAFTATPKGKTLELFGRPDDPHSPISDDNKPKAFHVYSMR  522
             ++ +  ++ ++  ++ +S++AFTATPK KT+E+FG  +        D    +FH+YSMR
Sbjct  454  DQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQA-------DGSYHPFHIYSMR  506

Query  523  QAIEEGFILDVLKNYTTYATAWKIAHPEGEDKEVDSKKARIKLAKWVRLHPYNINQRVEI  582
            QAIEEGFIL+VL+NY TY T+ KIA +  ED E+    A   +AK   LHP  + Q+ EI
Sbjct  507  QAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEI  566

Query  583  IVEHFRENVRHLLNGQAKAMVVTGSRQEAVRYQLAMTSYIIEKGYQDVHALVAFSGEVPA  642
            ++E+FR   +  ++G++KAM+VT+SR +AVRY      YI EKGY D++ LVAFSG V  
Sbjct  567  MIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVED  626

Query  643  DDYITESVTEY-DKKLNPGLNG-RKHDKAL----DSDDFNVMIVANKYQTGFDQPKLCAM  696
            D+       EY + K+N   +G R +++ L    +S+DFN++IVA+KYQTGFD+P L +M
Sbjct  627  DG------IEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTM  680

Query  697  YVDKKLQGVECVQTLSRLNRTFPGKDQTFVLDFFNSEEDILESFKPYYTTAELDSVTDPH  756
            +VDK+L+GV  VQTLSRLNRT PGK +TF+LDF N+ E+I E+F+P+Y ++ L    + +
Sbjct  681  FVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININ  740

Query  757  ILFDIMSKLDEEHIYEWSEVE  777
            +++D  SKL   HIY+  +++
Sbjct  741  LIYDTQSKLRKFHIYNDDDIQ  761

57) PSF113_5186 in NC_016830


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  495 bits (1866),  Expect = 7e-141, Method: Compositional matrix adjust.
 Identities = 330/798 (42%), Positives = 514/798 (65%), Gaps = 68/798 (8%)

Query  1    MANSKEAQFQQDIIETLAA-QGWLVG--TASGYDRRTALYTEDVLGYFKDAWPERWDKFA  57
            + ++KE +F+QDI  +L    GW       + YD   AL    +L + K++ P  W ++ 
Sbjct  4    VIKNKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYV  63

Query  58   KANPNAPEDVLVQKLVRELEQSGTLDVLRHGFKLPAVKVELCSFQPDHGMNPDTLKRYEC  117
                  +E+ ++++L  E+ + G L+VLR G++  +V   +  FQP  ++N + +K YE 
Sbjct  64   SIYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEA  123

Query  118  NRLRVVPEVSYSPHAREAGGSGQSYNPRLDLVLFVNGIPSATLELKSEFK-QSVENAKRQ  176
            NR++ V +  YS          + Y   +D+VL +NGIP  +LELK+++  Q+VE+A+ Q
Sbjct  124  NRFQCVRQFQYS----------NKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQ  173

Query  177  YRYDRPVKDPLTRKPEPLLTFKRGALVHFAVGQNEVAMTTKLAGKDTFFLPFNLGSEEGG  236
            +  DR  K       E ++ F+   LV FAV++ +V MTTKLA  +T+FLPF+ GS+  G
Sbjct  174  FEQDRDPK-------ELIFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPG  226

Query  237  --AGNPMPADANQYATSYLWQRLLQPDAWLKVLGRFLHLDKKTSEGFDGAPVTKETMIFP  294
              +G   P++++ Y+TSYLW+ +L +   L ++ RF++L+ K           K  +IFP
Sbjct  227  RVGGAGNPSNPSGYPTSYLWENVLTSYQLLDIFERFMNLEEK-----------KKLLIFP  275

Query  295  RYHQWEVVNTLIDTTRAEGPGKRYLIQHSAGSGKSNSIAWTAHQLASLYDDAGQRQFNSV  354
            RYHQ +VV+ LI  T+ +GPGK YLIQHSAGSGKSNSIAW A +LASL  + +Q  ++SV
Sbjct  276  RYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSV  335

Query  355  IVVTDRTVLDSQLQNTIYQFEHAQGVVKPISRDIGNQSKSEQLAEALAEQTRIIIVTIQT  414
            IVVTDRTVLD QLQNT+  FEH+ G V  I    G++  S++L  A+ +Q +III T+Q 
Sbjct  336  IVVTDRTVLDRQLQNTLMSFEHTVGQVETI----GDNKTSQDLKTAINDQKKIIITTLQK  391

Query  415  FPALFDALDKYPKLASGR-YAVIADEAHSSQTGSSASKLKQILGS------------DAL  461
            FP ++D +D+    ++GR +A++ DEAHSSQTGSSA KLK+ L+             +++
Sbjct  392  FPVIYDEIDN----TAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESV  447

Query  462  DAEEVSAEELLDAAVQARQPNERISYYAFTATPKPKTLELFG-RPADPTLPASSSNKPEP  520
            + + +  ++ +  ++ ++  ++ +S++AFTATPK KT+E+FG + AD +         +P
Sbjct  448  EDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSY--------HP  499

Query  521  FHLYSMRQAIEEGFILDVLRNYTTYSTAWKIAHPDGEDDEVESKKARIKLARWVRLHPYN  580
            FH+YSMRQAIEEGFIL+VL+NY TY+T+ KIA +  ED E+    A   +A+   LHP  
Sbjct  500  FHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWV  559

Query  581  ISQKVEVIVEHFRANIRNLLNGQAKAMVVTSSRQEAVRYQLAVRAYVKQMGYNDVHPLVA  640
            + QK E+++E+FR+  ++ ++G++KAM+VT+SR +AVRY    + Y+K+ GY D++ LVA
Sbjct  560  LRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVA  619

Query  641  FSGSVLPDEAIPEEVTENSSLLNPG--LNGRDLALAFDTPDFNVMIAANKYQTGFDQPKL  698
            FSG+V  D++I E    + +L ++G  ++  +L  AF++ DFN++I A+KYQTGFD+P L
Sbjct  620  FSGTV-EDDGI-EYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLL  677

Query  699  CAMYVDKKLQGVDCVQTLSRLNRTFGDSKETFILDFFNEPQDILDAFLPYYTKAELSDVT  758
             +M+VDK+L+GV  VQTLSRLNRT  +  +TFILDF N +++I +AF P+Y  + L +  
Sbjct  678  HTMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEI  737

Query  759  DPQIIYDLQKKLDAEGIY  776
            + ++IYD Q KL    IY
Sbjct  738  NINLIYDTQSKLRKFHIY  755

58) ICDCCJ07001_731 in NC_014802


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  494 bits (1862),  Expect = 1e-140, Method: Compositional matrix adjust.
 Identities = 352/840 (42%), Positives = 564/840 (68%), Gaps = 51/840 (6%)

Query  8    KGIKIYLAFAKPNTNANEESVKKYEQNSLSIIRQLHYSTQNKNSLDIVIFLNGLPLITIE  67
            +G+ + + + +P ++ N E++K+YE N +  +RQ++YS + +N++D+V+ +NG+PL+++E
Sbjct  98   RGVSFKVVYFQPASSLNTENIKNYEANRFQCVRQFQYSNKYRNTIDMVLMINGIPLVALE  157

Query  68   LKNHFTGQNVFHAIKQYKKDRNPKEAIFNYT---IVHFALDNDLCYMSAKLDQDATTFLP  124
            LKN++TGQNV HA  Q+ +DR+PKE IF++    +V FA+D+    M++KL ++ T FLP
Sbjct  158  LKNQYTGQNVEHARLQFEQDRDPKELIFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLP  217

Query  125  FNLGLNNGSGKIGLANGAGNPP-SDGIKTAYLWKKIFKKDTLLNLFFNFVQVVKKKNEEI  183
            F+ G +NG+G++G   GAGNP+ + G  T+YLW +++    LL++F  F+++  KK+  +
Sbjct  218  FDQG-SNGPGRVG---GAGNPSNPSGYPTSYLWENVLTSYQLLDIFERFMNLEEKKK--L  271

Query  184  IIFPRYHQFDVVEKLLAHAKENGTGQRYLIQHSAGSGKSNSISWLAHNLVSLHRLE-KNI  242
            +IFPRYHQ+DVV KL+++++++G G+ YLIQHSAGSGKSNSI+WLA +L SLH  E + I
Sbjct  272  LIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPI  331

Query  243  FDSIIVVTDRKVLDSQIRENVKSFSQTKNLVEAITHG--SKQLKNALEEGKKIIITTIQK  300
            + S+IVVTDR VLD Q+++ + SF +T   VE+I +   S++LK A+++ KKIIITT+QK
Sbjct  332  YSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQK  391

Query  301  FPFILDEIKTLKSKTFAIIIDEAHSSQNGSNAQKMAEAIRDKSGD-----------ESQN  349
            FP I DEI    +++FAI++DEAHSSQ GS+AQK+ +A+ DK +            E Q+
Sbjct  392  FPVIYDEIDNTAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQS  451

Query  350  LDDE--ILEIIKNKKLQSNASYFAFTATPKPKTLEMFGMPCDVNGEQMFIPFHLYSMKQA  407
            LDD+  I++ + ++  + N S+FAFTATPK KT+EMFG     +++  + PFH+YSM+QA
Sbjct  452  LDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTK---QADGSYHPFHIYSMRQA  508

Query  408  IEEGFILDVLKGYTTYKSYYKIISCTNDNPKHDKKRASVKLKAYVQNNIKTIEQKSQIMC  467
            IEEGFIL+VL+ Y TY++ YKI    +++P   K  A   +  Y   +   + QK++IM 
Sbjct  509  IEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKAEIMI  568

Query  468  EHFFQNSFKKINGKAKAMIVTSSRENAVKYYLVFREYLR-KNYPHFKAIVAFSGEVNLEG  526
            E+F   + K ++G++KAMIVT+SR +AV+Y   F+ Y++ K Y +   +VAFSG V+ +G
Sbjct  569  EQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSGTVEDDG  628

Query  527  EIYSESGLN------GFAENVLKDEFKKDEYRFLIVAEKYQTGFDEPLLHTMYVDKALSG  580
              Y+E+ +N       + EN LK+ F  +++ +LIVAEKYQTGFDEPLLHTM+VDK L G
Sbjct  629  IEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFVDKRLRG  688

Query  581  VSAVQTLSRLNRTCKNKENTFVLDFVNTHEDIAKSFSVFYEQTYLSEATDDNRIFDLKAN  640
            V AVQTLSRLNRT   K +TF+LDFVNT E+I  +F  FYE T L E  + N I+D +++
Sbjct  689  VKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININLIYDTQSK  748

Query  641  LNEYEIYTQEEIDD---FANAILRKEKENIIHAKLDIML----DRFNQKSDDEKLDFYNK  693
            L  ++IY +++I+    +     +K++++++ ++L  +L     R+++ ++D + DF   
Sbjct  749  LRKFHIYNDDDIQTVMKLNRQAKQKQNDQLL-GRLSSVLRPVISRYSDLPEDVQYDFRVT  807

Query  694  AKTYLKEYSFLAQILPyedieleklyillkklaskiilpkSEDLAKGILDNVDFDSYRLQ  753
             + + K Y+++AQI    D EL    I+   L   I   + + +  +I D+V ++ Y+LQ
Sbjct  808  LRNFNKWYNYIAQIDRTFDKELLEESIFTGFLLKFIPEKQRNYI--DIEDKVKLEYYKLQ  865

Query  754  LDKTQDIVLQG----NGELKPSFADGSSKSVEAELEELSNIIKDFNNKYANIDFNESDKI  809
             D   DI L      NG+L  +    ++   E E + L++II  +N++++N DF ++D++
Sbjct  866  EDFKGDIALVNEDVENGQLAHPSEVNATVRPEEEYDSLNEIIHKINERFPN-DFTQGDRV  924

59) Psest_0876 in NC_019936


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  494 bits (1861),  Expect = 2e-140, Method: Compositional matrix adjust.
 Identities = 329/804 (41%), Positives = 523/804 (66%), Gaps = 67/804 (8%)

Query  1    MADSKEAQFQQDIITAMVA-QGWLTG--PASGYDRRTALYTEDFLGYFKDAWPERWDKFA  57
            +  +KE +F+QDI +++V   GW +     + YD   AL    +L + K++ P  W ++ 
Sbjct  4    VIKNKEINFEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYV  63

Query  58   KANPNNPDDVLVQKLVRELEQSGTLDVLRHGFKLPAVKVELCSFQPDHGMNPDTLKRYWC  117
                 N+++ ++++L  E+ + G L+VLR G++  +V   +  FQP  ++N + +K Y  
Sbjct  64   SIYRTNAEQKFLKRLNEEITNHGILHVLRKGIRDRGVSFKVVYFQPASSLNTENIKNYEA  123

Query  118  NRLRVVPEVSYSPHAREAGSSGQSYNPRLDLVLFVNGIPTATLELKSEFK-QSVENAKRQ  176
            NR++ V +  YS          + Y   +D+VL +NGIP  +LELK+++  Q+VE+A+ Q
Sbjct  124  NRFQCVRQFQYS----------NKYRNTIDMVLMINGIPLVALELKNQYTGQNVEHARLQ  173

Query  177  YRYDRPVKDPLTRKPEPLLTFKRGALVHFAVGQNEVAMTTKLDGKDTFFLPFNLGSAEGG  236
            +  DR  K       E ++ F+   LV FAV++ +V MTTKL   +T+FLPF+ GS   G
Sbjct  174  FEQDRDPK-------ELIFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFDQGSNGPG  226

Query  237  --AGNPPPPDDSQYATGYLWQQLFQPDAWLKVLGRFLHLDKKTSEGFDGSLTTRETMIFP  294
              +G   P++ S Y+T+YLW++++ +   L ++ RF++L+ K           +  +IFP
Sbjct  227  RVGGAGNPSNPSGYPTSYLWENVLTSYQLLDIFERFMNLEEK-----------KKLLIFP  275

Query  295  RYHQWDVVNQLIQTTHAEGPGKRYLIQHSAGSGKSNSIAWTAHQLASMYSDDGQRLFSSV  354
            RYHQ DVV++LI  T+ +GPGK YLIQHSAGSGKSNSIAW A +LAS+ S+++Q ++SSV
Sbjct  276  RYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPIYSSV  335

Query  355  IVVTDRTVLDSQLQNTIYQFVHAQGVVRPITRDVGNQSKSEQLAEALAEQTRIIIVTIQT  414
            IVVTDRTVLD QLQNT+  F H+ G V  I    G++  S++L  A+ +Q +III T+Q 
Sbjct  336  IVVTDRTVLDRQLQNTLMSFEHTVGQVETI----GDNKTSQDLKTAINDQKKIIITTLQK  391

Query  415  FPALFDALEKYPKLASGR-YAVIADEAHSSQTGSSASKLKQILGS------------DAL  461
            FP ++D +++    ++GR +A++ DEAHSSQTGSSA KLK+ L+             +++
Sbjct  392  FPVIYDEIDN----TAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESV  447

Query  462  DAEEISAEDLLDAAVQARQPNERISYYAFTATPKAKTLELFGRVPDPTLPPSASNRPEAF  521
            + + +  +D +  ++ ++  ++ +S++AFTATPK KT+E+FG     T  + +S +P  F
Sbjct  448  EDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFG-----TKQADGSYHP--F  500

Query  522  HLYSMRQAIEEGFILDVLQNYTTYSTAWKIAHPDGEDDEVDSKKARMKLARWVRLHPYNI  581
            H+YSMRQAIEEGFIL+VLQNY TY+T+ KIA +  ED E+    A   +A+   LHP  +
Sbjct  501  HIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVL  560

Query  582  DKKVEIIVEHFRGNIRHLLGGQAKAMVVTSSRQEAVRYQLAVKAYVQQMGYADVHPLVAF  641
             +K EI++E+FR+  +  + G++KAM+VT+SR +AVRY    K Y+++ GY+D++ LVAF
Sbjct  561  RQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAF  620

Query  642  SGSVLPDEVIPEEVTESSSLLNAG--LNGRDLADAFDTQDFNVMIAANKYQTGFDQPKLC  699
            SG+V  D +  E      +L ++G  ++  +L +AF+++DFN++I A+KYQTGFD+P L 
Sbjct  621  SGTVEDDGI--EYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLH  678

Query  700  AMYVDKKLQGVDCVQTLSRLNRTFPAK-QTFILDFFNEPQDILDAFLPYYTKAELSDVTD  758
            +M+VDK+L+GV  VQTLSRLNRT P+K +TFILDF N +++I +AF P+Y  + L +  +
Sbjct  679  TMFVDKRLRGVKAVQTLSRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEIN  738

Query  759  PQIIYDLQKKLDAEGIYHWQEVEA  782
             ++IYD Q KL    IY+ +++++
Sbjct  739  INLIYDTQSKLRKFHIYNDDDIQT  762

60) DelCs14_4347 in NC_015563


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  469 bits (1769),  Expect = 4e-133, Method: Compositional matrix adjust.
 Identities = 331/825 (41%), Positives = 509/825 (62%), Gaps = 99/825 (12%)

Query  10   FQDDIIRQLLA-NGW--LLGSPEKYNRELALYPEDALGFVQETQDAQWQRFCANHPKDAE  66
            F++DI   L+   GW  +      Y+ ++AL P   L FV++TQ  +W+R+ +    +AE
Sbjct  12   FEQDIEASLVQYGGWESVRFQDTHYDANIALDPTVLLEFVKQTQPKNWKRYVSIYRTNAE  71

Query  67   QKFLQLIAAQLGKADPNATHKDSRTFGTLGVLRHELRDRNARLSLCQFKPEHGLNPDTLA  126
            QKFL+ +  ++ +             G L VLR  +RDR   + +  F+P  +LN + + 
Sbjct  72   QKFLKRLNEEITNH------------GILHVLRKGIRDRGVSFKVVYFQPASSLNTENIK  119

Query  127  RYAKNRLRVVPELVYSPWCTDACFTEAGTKAKAWRIDLVLFVNGVPVATLELKSEFK-QA  185
             Y  NR++ V ++ YS    ++             ID+VL +NG+P+ +LELK+++  Q 
Sbjct  120  NYEANRFQCVRQFQYSNKYRNT-------------IDMVLMINGIPLVALELKNQYTGQN  166

Query  186  VDRAVRQYKTTRLPVDPVAKKPEPLLTFKRGALVHFAVSQYEVHMATRLEGEETYFLPFN  245
            V++A  Q+   R P        E ++ F+   LV FAV +++V M+T+L   +TYFLPF+
Sbjct  167  VEHARLQFEQDRDP-------KELIFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFD  219

Query  246  KGTADGG--AGNDVPDDIHRYATDYLWNEVLLPDNLLNILARFVHLQIEDKEDWEGRKYK  303
            +G+ + G  +G + P +   Y+T YLW++VL + +LL+I+ RF++L+            K
Sbjct  220  QGSNGPGRVGGAGNPSNPSGYPTSYLWENVLTSYQLLDIFERFMNLEE-----------K  268

Query  304  KESLIFPRYHQWDVVGKLLAAAHSEGPGQKYLIQHSAGSGKSNSIAWVAHQLSSLYKHDG  363
            K  LIFPRYHQ DVV KL++ ++ +GPG++YLIQHSAGSGKSNSIAW+A +L+SL  +++
Sbjct  269  KKLLIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNED  328

Query  364  KKQFDSVIVVTDRTVLDAQLQDTIYQFEHTDGVVGRINNKEGDGSKSEKLAAALESAQPI  423
            +  + SVIVVTDRTVLD QLQ+T+  FEHT G V  I    GD   S+ L +A++  + I
Sbjct  329  QPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETI----GDNKTSQDLKTAINDQKKI  384

Query  424  IIVTIQTFPFVLKAIENSVSLKERCYAIIADEAHSSQSGSTARQLKEVLMKeage-----  478
            II T+Q FP +   I+N+ +   R +AI+ DEAHSSQ+GS+A++LK+ L    +      
Sbjct  385  IITTLQKFPVIYDEIDNTAG---RSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQ  441

Query  479  ---agdeaaeldsddIIAATVASRRASGNLSYFAFTATPKAKTLELFGRVPRPDEVPSAT  535
                + E   LD +D I  T+ S+   +NLS+FAFTATPK KT+E+FG          A 
Sbjct  442  EFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFG-------TKQAD  494

Query  536  NKPAAFHVYSMRQAIEEGFILDVLKNYTNYKVAYKLALKVQDAD--AEVESKRAKVK---  590
                +FH+YSMRQAIEEGFIL+VL+NY  Y+ +YK+A  +++    +  E+ RA  K   
Sbjct  495  GSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQS  554

Query  591  LNQWVRLHDHNIAQKVMVIVEHFKDNVMGLLGGQAKAMVVTSSRKEAVRYKQCFDKYITE  650
            L+ WV      + QK  +++E+F+      + G++KAM+VT+SR +AVRY Q F KYI E
Sbjct  555  LHPWV------LRQKAEIMIEQFRSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKE  608

Query  651  KGYQKIHAMVAFSGEVEFTDKDPAAAGQIGEKFTETNMN-----PNLKGRDMRKAFDSDD  705
            KGY  ++ +VAFSG VE          + G  +TE +MN       ++  +++ AF+S+D
Sbjct  609  KGYTDMDVLVAFSGTVE----------DDGIEYTEPKMNLTHSGERIQENQLKEAFHSED  658

Query  706  YQVMIVANKFQTGFDQPKLCAMYVDKKLVGVECVQTLSRLNRTYPNKAETGTYVLDFFNE  765
            ++++IVA+K+QTGFD+P L +M+VDK+L GV  VQTLSRLNRT P K++  T++LDF N 
Sbjct  659  FNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMPGKTD--TFILDFVNT  716

Query  766  SDEILEAFQPYYQTAELLDVSDPNLIFALQDKLRAGGIFTWQEVE  810
            ++EI EAFQP+Y+++ L +  + NLI+  Q KLR   I+  ++++
Sbjct  717  AEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQ  761


 Score = 29.3 bits (91),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 45/203 (23%), Positives = 111/203 (55%), Gaps = 13/203 (6%)

Query  887   FKKDLGTFVRFYEFMSQIVDYDDTDLEKLSLYARSLRPMLRETLLDEDDIDLGNVVLSHY  946
             F+  L  F + Y++++QI    D +L   S+++  L   + E   +  DI+ ++V L  Y
Sbjct  804   FRVTLRNFNKWYNYIAQIDRTFDKELLEESIFTGFLLKFIPEKQRNYIDIE-DKVKLEYY  862

Query  947   RV-AKIREQDLVLKENSADYKLV-PGEGLGTAKPQDKKEEFLSQIIDRLNEVFVTD-QLT  1003
             ++   ++ +  +++E+  + +L  P+E  +T +P++  +  L++II+++NE F  D    
Sbjct  863   KLQEDFKGDIALVNEDVENGQLAHPSEVNATVRPEEEYDS-LNEIIHKINERFPNDFTQG  921

Query  1004  DKDMVNYAYTIRDKV--GENAKVMKQIENNSPEQAMLGDFSKAIDDAIMDSSEAHQNQMM  1061
             D+ +V+    +R+ +    +AK+++  +NNS E    + F + ++D ++D  +  +    
Sbjct  922   DRVLVK---NMRETLINNTDAKLVNMAQNNSEEMFANSLFQQQFQDFLIDQYNQGEAAYS  978

Query  1062  QLLADPGKAANFARVVFDLLVQG  1084
             +++++     +F   V++LL ++
Sbjct  979   KMFSN---NRDFYDTVYQLLAKD  998

61) TL13_0247 in NC_021213


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  450 bits (1696),  Expect = 2e-127, Method: Compositional matrix adjust.
 Identities = 335/813 (42%), Positives = 536/813 (66%), Gaps = 35/813 (4%)

Query  30   PQSNYNQRLAMDTDILWEFLRATQEDE-IDY--LLKKLDKEVILNLINQEIIKGGLLFAL  86
             +++Y+  +A+D  +L EF++ TQ  +   Y  + +    + +L+ +N+EI + G+L  L
Sbjct  32   QDTHYDANIALDPTVLLEFVKQTQPKNWKRYVSIYRTNAEQKFLKRLNEEITNHGILHVL  91

Query  87   KSGVYIENKQLKLVYPKPATSFNAKAVKRYEQNRFTVMEEVVYKDK--DRIDLVIFLNGL  144
            + G+      +K+VY +PA+S+N+  +K YE NRF  + +  Y +K  + ID+V+ +NG+
Sbjct  92   RKGIRDRGVSFKVVYFQPASSLNTENIKNYEANRFQCVRQFQYSNKYRNTIDMVLMINGI  151

Query  145  ALFAIELKLNSSGQSVDDAIRQL-KKRDSKNRLFKFNAGVLASFAVDTLEVYMTTELKEQ  203
            +L A+ELK + +GQ+V++A  Q+ + RD+K+ +F+FN+  L  FAVD ++V MTT L   
Sbjct  152  PLVALELKNQYTGQNVEHARLQFEQDRDPKELIFQFNSRFLVYFAVDHFNVLMTTKLAKG  211

Query  204  DTYFLPFNMG-KGEGVDQGAGNPHNESGPDTAYFWKEVLTKDSILQLIERFIFLKVDRDK  262
            +TYFLPF+ G +G G   GAGNP N SG  T+Y+W +VLT   +L+++ERF+ L      
Sbjct  212  NTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLWENVLTSYQLLDIFERFMNLE-----  266

Query  263  KGKKTLIFPRYQQRRAVNRVLEDMKVNHTDSNYLIQHSAGSGKTNTIAWLAHSLISLHDQ  322
              KK LIFPRY+Q   V++++ D + +  + NYLIQHSAGSGK+N+IAWLA  L SLH +
Sbjct  267  EKKKLLIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSN  326

Query  323  EDRNVVDTVLIVTDRIVVDRQLQDAVQAIQHQPGVIKVMDDKATSSDLADALAGNTKIIA  382
            ED+ +  +V++VTDR V+DRQLQ+++ +++H  G +  ++D+ TS DL  A+ ++ KII 
Sbjct  327  EDQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETIGDNKTSQDLKTAINDQKKIII  386

Query  383  TTIHKFAQINKSDWMTAGPTAQKRFAILIDEAHSSTTGSYMSAVSQVLTETDVE------  436
            TT++KF+ I        + TA + FAIL+DEAHSS TGS    + + L++ +        
Sbjct  387  TTLQKFPVIYDE----IDNTAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQE  442

Query  437  -DGTIDEVQEVSVADAIEQEIARTGKQDNISIIAFTATPKATTLQLFGKTLPDGSKGPFD  495
             + ++++ Q +   D I Q +   G++DN+S++AFTATPK  T+++FG   +DGS  PF+
Sbjct  443  FEESVED-QSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFH  501

Query  496  VYSMKQAIQEDFILDVlnnyttyktyyklnkAVEEDPQFKTGLAKRKIAKFIELSDENID  555
            +YSM+QAI+E+FIL+VL+NY TY+T YK+ K++EEDP++    A R IAK+  L    + 
Sbjct  502  IYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLR  561

Query  556  QKVEIIMDHFISHGIMAELGGQGKAMIVTSGREAAVKYQKSFKRYFKEHHITSIGALVAF  615
            QK EI++++F S    A + G+GKAMIVT++R  AV+Y + FK+Y+KE   T ++ LVAF
Sbjct  562  QKAEIMIEQFRSVTQKA-VQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAF  620

Query  616  SGKVSMDDQDYTEALMN------GIAEDKLKERFDTDDYQVLIVANKYQTGFDQPKLVAM  669
            SG V  D+ +YTE+ MN       I E++LKE F+++D+++LIVA+KYQTGFD+P L +M
Sbjct  621  SGTVEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTM  680

Query  670  YVDKKLRDVAAVQTLSRLNRIVGGYNKKTFVLDFKNTYEDINKAFSPYYKETILAETITP  729
            +VDK+LR+V AVQTLSRLNR + G +  TF+LDF NT E+I  AF P+Y  T L E I  
Sbjct  681  FVDKRLRGVKAVQTLSRLNRTMPG-KTDTFILDFVNTAEEIYEAFQPFYEATSLKEEINI  739

Query  730  SDVFDLVRKIDEYGILDSDVIHEFNQFLYQEKRSSRDK--QKMIALLNKGYSRVQEFDEK  787
            + ++D   K+  + I + D I+   ++  Q K+   D+   ++ ++L    SR  ++ E 
Sbjct  740  NLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLLGRLSSVLRPVISRYSDLPED  799

Query  788  EQLEIKKVFRGFLRMYTFLIQ-ATAYQNEVLHE  819
             Q +++  +R F + Y ++ Q   ++++E+L+E
Sbjct  800  VQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEE  832

62) CYCME_2461 in NC_021917


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  442 bits (1664),  Expect = 7e-125, Method: Compositional matrix adjust.
 Identities = 314/775 (41%), Positives = 507/775 (66%), Gaps = 69/775 (8%)

Query  116  FNLMYPAPLASSSEKVKQNFSENLFSCTRQLRYSQANPLQEIDMVLFINGIPLITLELKN  175
            F+++Y  P +S +    +N+  N F C RQ++YS+    + IDMVL INGIPL++LELKN
Sbjct  102  FKVVYFQPASSLNTENIKNYEANRFQCVRQFQYSNKYR-NTIDMVLMINGIPLVALELKN  160

Query  176  AWTNQTARYHGQKQYREDRDTNQPLLNF-GRCLVHMAVDTDEVYMTTKLAGKATFFLPFN  234
              T Q    H++ Q+ +DRD ++ +++F +R LV  AVD  +V MTTKLA   T+FLPF+
Sbjct  161  QYTGQNVE-HARLQFEQDRDPKELIFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFD  219

Query  235  KGHNL-----GQGNPPNQTGHKTAYLWEEVFTKESLANIIQHFVRLDGSSKDPLNKRTLF  289
            +G N      G GNP+N +G  T+YLWE+V+T   L +I+++F+ L+       +K+ L+
Sbjct  220  QGSNGPGRVGGAGNPSNPSGYPTSYLWENVLTSYQLLDIFERFMNLEE------KKKLLI  273

Query  290  FPRYHQMDVVRKLVNDASENGVGQTYLIQHSAGSGKSNSITWAAYQLIETYPANEGVQGS  349
            FPRYHQ+DVV+KL++D+ ++G G+ YLIQHSAGSGKSNSI+W AY+L    + +      
Sbjct  274  FPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHLASLHSNE------  327

Query  350  RGLDQPLFDSVIVVTDRRLLDKQLRDNIKDFSEVK---NIVAPAHKSSELKSALENGKKI  406
               DQP++ SVIVVTDR +LD+QL++ +  F +     + ++    S +LK+A+++ KKI
Sbjct  328  ---DQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETIGDNKTSQDLKTAINDQKKI  384

Query  407  IITTIQKFPFIIDGIADLSDKRFAVIIDEAHSSQSGSAHDNMNRAMGKSEV---------  457
            IITT+QKFP I D I + +++ FA+++DEAHSSQ+GS+ +++++A++  E          
Sbjct  385  IITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFE  444

Query  458  ----EGAEDAQDKILQAMKSRKMRGNASYLAFTATPKNTTLEKFGQQQPDGSFEPFHLYT  513
                + + D QD+I+Q++ S+  ++N S++AFTATPK+ T+E FG +Q+DGS++PFH+Y+
Sbjct  445  ESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFHIYS  504

Query  514  MKQAIEEGFILDVLANYTTYKSYYEIEKSIQDNPEFDTKKAQKKLRAYVESSQHTIDTKA  573
            M+QAIEEGFIL+VL NY TY++ Y I KSI+++PE+    A + +  Y       +  KA
Sbjct  505  MRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKA  564

Query  574  EIMLEHFVPHVVNAkklkgkgkgMVVTQNIETAIRYYKAITRFLEEQG-NPFKAVIAFSG  632
            EIM+E+F  + V  K ++G+GK+M+VT +   A+RY + + +++ E+G      ++AFSG
Sbjct  565  EIMIEQF--RSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSG  622

Query  633  EKEVDGIKYTEAEMN------GFAENETKDKFDKDEYRLLVVANKYLTGFDQPKLCAMYV  686
              E DGI YTE+ MN       + EN+ K+ F+ +++ LL+VA+KY TGFD+P L +M+V
Sbjct  623  TVEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFV  682

Query  687  DKKLASVLCVQALSRLNRSAPKLGKKTEDLFVLDFFNSIEEIKTAFDPFYTATSLSEATD  746
            DK+L +V  VQ+LSRLNR+ P  GK   D F+LDF N+ EEI  AF+PFY ATSL E  +
Sbjct  683  DKRLRGVKAVQTLSRLNRTMP--GKT--DTFILDFVNTAEEIYEAFQPFYEATSLKEEIN  738

Query  747  VNVLHELKDEMDDVGVYEWTEVEEFVKRYFDNEDAQ--------RLSPIIDIAAARFNIE  798
            +N++ + +  +    +Y+  +++  +K  ++ +  Q        RLS+++    +R++  
Sbjct  739  INLIYDTQSKLRKFHIYNDDDIQTVMK--LNRQAKQKQNDQLLGRLSSVLRPVISRYS--  794

Query  799  LELENEAKIDFKIKAKQFVKIYGQMASI-MSYEIAVW-EKLF--WFLKFLIPKLK  849
             +L ++ + DF++  ++F K Y  +A I  +++  +  E +F   +LKF+  K +
Sbjct  795  -DLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFTGFLLKFIPEKQR  848

63) Tola_2270 in NC_012691


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  435 bits (1640),  Expect = 5e-123, Method: Compositional matrix adjust.
 Identities = 319/746 (43%), Positives = 494/746 (67%), Gaps = 62/746 (8%)

Query  118  LTLMYPAPLASSSQAVKQNFTANIFSCTRQVCYSQLNPLQEIDMVLFINGIPLVTLELKN  177
            + ++Y  P +S +    +N+ AN F C RQ  YS+    + IDMVL INGIPLV+LELKN
Sbjct  102  FKVVYFQPASSLNTENIKNYEANRFQCVRQFQYSNKYR-NTIDMVLMINGIPLVALELKN  160

Query  178  AWTGQTARYHGQKQYREDRDINQPLLNF-GRCLVHMAVDTDEVYMTTKLAGKETFFLPFN  236
              TGQ    H++ Q+ +DRD ++ +++F +R LV  AVD  +V MTTKLA  +T+FLPF+
Sbjct  161  QYTGQNVE-HARLQFEQDRDPKELIFQFNSRFLVYFAVDHFNVLMTTKLAKGNTYFLPFD  219

Query  237  KGNNH-----GQGNPPNLFGHKTAYLWEEVFTKVSLANIIQHFVRLDGSSKDLLNKRTLF  291
            +G+N      G GNP+N  G  T+YLWE+V+T   L +I+++F+ L+       +K+ L+
Sbjct  220  QGSNGPGRVGGAGNPSNPSGYPTSYLWENVLTSYQLLDIFERFMNLEE------KKKLLI  273

Query  292  FPRYHQLDVVRRLVDHAAHYGVGHTYLIQHSAGSGKSNSITWAAYQLIEAYPATNDVHGS  351
            FPRYHQLDVV++L+ ++ H G G  YLIQHSAGSGKSNSI+W AY+L         +H++
Sbjct  274  FPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIAWLAYHL-------ASLHSN  326

Query  352  HGIDQPLFDSVIVVTDRRLLDKQLRENIKEFSEVK---NIIAPANKSSELKSALENGKKI  408
            +  DQP++ SVIVVTDR +LD+QL++ +  F +     + I+  + S +LK+A+++ KKI
Sbjct  327  E--DQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETIGDNKTSQDLKTAINDQKKI  384

Query  409  IITTIQKFPFIVDGISDLSDKRFAVIIDEAHSSQSGTAHSKMNEAMG-------------  455
            IITT+QKFP I D I + +++ FA+++DEAHSSQ+G++  K+++A++             
Sbjct  385  IITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFE  444

Query  456  -KTEEEAEDIQDLILQSMLSRKMRGNASYLAFTATPKNTTLEKFGQRQEDGSYRPFHLYS  514
               E+++ D QD I+Q++LS+  ++N S++AFTATPK+ T+E FG +Q DGSY+PFH+YS
Sbjct  445  ESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFHIYS  504

Query  515  MKQAIEEGFILDVVANYTTYRSYYEISKSVEDNPQFDSKKAQKKLRAYVEGSQETINVKA  574
            M+QAIEEGFIL+V+ NY TY + Y I+KS+E++P++    A + +  Y       +  KA
Sbjct  505  MRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEAVRAIAKYQSLHPWVLRQKA  564

Query  575  EIMLEHFIPHVVNAkklkgkgkgMVVTQNIVSAIRYFKAITKQLDAIG-NPFKVLIAFSG  633
            EIM+E+F  + V  K ++G+GK+M+VT + + A+RY + + K +   G     VL+AFSG
Sbjct  565  EIMIEQF--RSVTQKAVQGRGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDMDVLVAFSG  622

Query  634  TKEVDGIEYTEADLN------GFAENDTRDKFDTDEYRLLIVANKYLTGFDQPKLCAMYV  687
            T E DGIEYTE+ +N       + EN+ ++ F+++++ LLIVA+KY TGFD+P L +M+V
Sbjct  623  TVEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLIVAEKYQTGFDEPLLHTMFV  682

Query  688  DKKLAGVLCVQALSRLNRAAPKWGKKTEDLFILDFFNAVDDIKAAFDPFYTATSLSQATD  747
            DK+L GV  VQ+LSRLNR+ P  GK   D FILDF N+ ++I  AF+PFY ATSL +  +
Sbjct  683  DKRLRGVKAVQTLSRLNRTMP--GKT--DTFILDFVNTAEEIYEAFQPFYEATSLKEEIN  738

Query  748  INVLHELKDALDDVGVYEWYEVEEFV--QRYFKG-DDAQL---LSGIIDVAAERFNQELE  801
            IN++ + +  L    +Y+  +++  +  +R  K  ++ QL   LS+++     R++   +
Sbjct  739  INLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLLGRLSSVLRPVISRYS---D  795

Query  802  LTNAEQVDFKIKAKQFVKIYGQMASI  827
            L +  Q DF++  ++F K Y  +A I
Sbjct  796  LPEDVQYDFRVTLRNFNKWYNYIAQI  821

64) APA42C_43180 in NC_017105


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  403 bits (1516),  Expect = 3e-113, Method: Compositional matrix adjust.
 Identities = 298/730 (41%), Positives = 475/730 (66%), Gaps = 67/730 (9%)

Query  1    MDMVLFLNGLPIVTLELKNAWTHQTARYHGQKQY-RERDANQTLLRF-GRVLVHMTADTD  58
            +DMVL +NG+P+V+LELKN  T Q    H++ Q+ ++RD+++ +++F +R LV  + D  
Sbjct  142  IDMVLMINGIPLVALELKNQYTGQNVE-HARLQFEQDRDPKELIFQFNSRFLVYFAVDHF  200

Query  59   EVWMATKLAGASTFFLPFNKGHNEg-----agnppnpngHKTSYLWEEVLQPQSLAGIIQ  113
            +V M+TKLA ++T+FLPF++G N       AGNP+NP+G  TSYLWE+VL +  L +I++
Sbjct  201  NVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLWENVLTSYQLLDIFE  260

Query  114  HFVLLEGKKTDPLTKKTLIFPRYHQLNVVRKLLSHAAQTGVGHKYLIQHSAGSGKSNSIT  173
            +F+ LE KK      K LIFPRYHQL+VV+KL+S++ + G G +YLIQHSAGSGKSNSI+
Sbjct  261  RFMNLEEKK------KLLIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIA  314

Query  174  WAAYQLIETYPAKLDLPGVRALDAPLFDSVIVVTDRRLLDKQLRDNIKDFSEVK---NIV  230
            W AY+L    +           D P++ SVIVVTDR +LD+QL++ +  F +     + +
Sbjct  315  WLAYHLASLHSNE---------DQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETI  365

Query  231  APALKSSDLKAALENGKKIIITTIQKFPFIIDGIEDLGDKRFAVIIDEAHSGQSGIASDK  290
            +    S DLK+A+++ KKIIITT+QKFP I D I++ +++ FA+++DEAHS+Q+G +++K
Sbjct  366  GDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTGSSAQK  425

Query  291  MNQAMGG------------DPDED---DAQDKILAAMQARKMRGNASYFAFTATPKPITL  335
            +++A+++            ++ ED   D QD+I+ ++ ++  ++N S+FAFTATPK  T+
Sbjct  426  LKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTI  485

Query  336  EKFGEQQSDGRFRPFHLYSMKQAIEEGFILDVLANYTTYKGYYEIQKSIEDNPLFDTSKA  395
            E FG +Q+DG ++PFH+YSM+QAIEEGFIL+VL NY TY+  Y I KSIE++P +  + A
Sbjct  486  EMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEA  545

Query  396  QKKLRAYVERSQQTINTKAEIMVENFIDKVVNPKKLRGKGKGMIVTQNIEVAIRYYKAVQ  455
             + +  Y       +  KAEIM+E+F  + V  K ++G+GK+MIVT +   A+RY +  +
Sbjct  546  VRAIAKYQSLHPWVLRQKAEIMIEQF--RSVTQKAVQGRGKAMIVTASRLHAVRYMQEFK  603

Query  456  AELAKRG-NPFKALIAFSGEKEVDGVKYTETEMN------GVPEDKTRSEFDKDEFRLLI  508
              +  +G      L+AFSG  E DG+ YTE  MN       + E++ +  F+ ++F LLI
Sbjct  604  KYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLI  663

Query  509  VANKYLTGFDQPKLCAMYVDKKLQSVLAVQALSRLNRSSPKLGKRTEDLFVLDFFNSIED  568
            VA+KY TGFD+P L +M+VDK+L++V AVQ+LSRLNR+ P  GK   D F+LDF N+ E+
Sbjct  664  VAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMP--GK--TDTFILDFVNTAEE  719

Query  569  IKAAFDPFFTVTTLSEATDVNVLHELKAALDDVGVYEWSEVEEFCKRFFDGEDSE-----  623
            I  AF+PF+  T+L E  ++N++ + ++ L    +Y+  +++   K   ++ + +     
Sbjct  720  IYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLL  779

Query  624  -KLSPLIDVAAERFNTGLELEDPEKIDFKIKAKQFVKIYGQMAAI-MPFEVEAW-EKLF-  679
             +LS+++     R++   +L +  + DF++  ++F K Y  +A I   F+ E   E +F 
Sbjct  780  GRLSSVLRPVISRYS---DLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFT  836

Query  680  -WFLKFLVPK  688
              +LKF+  K
Sbjct  837  GFLLKFIPEK  846

65) APA01_43180 in NC_013211


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  403 bits (1516),  Expect = 3e-113, Method: Compositional matrix adjust.
 Identities = 298/730 (41%), Positives = 475/730 (66%), Gaps = 67/730 (9%)

Query  1    MDMVLFLNGLPIVTLELKNAWTHQTARYHGQKQY-RERDANQTLLRF-GRVLVHMTADTD  58
            +DMVL +NG+P+V+LELKN  T Q    H++ Q+ ++RD+++ +++F +R LV  + D  
Sbjct  142  IDMVLMINGIPLVALELKNQYTGQNVE-HARLQFEQDRDPKELIFQFNSRFLVYFAVDHF  200

Query  59   EVWMATKLAGASTFFLPFNKGHNEg-----agnppnpngHKTSYLWEEVLQPQSLAGIIQ  113
            +V M+TKLA ++T+FLPF++G N       AGNP+NP+G  TSYLWE+VL +  L +I++
Sbjct  201  NVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLWENVLTSYQLLDIFE  260

Query  114  HFVLLEGKKTDPLTKKTLIFPRYHQLNVVRKLLSHAAQTGVGHKYLIQHSAGSGKSNSIT  173
            +F+ LE KK      K LIFPRYHQL+VV+KL+S++ + G G +YLIQHSAGSGKSNSI+
Sbjct  261  RFMNLEEKK------KLLIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIA  314

Query  174  WAAYQLIETYPAKLDLPGVRALDAPLFDSVIVVTDRRLLDKQLRDNIKDFSEVK---NIV  230
            W AY+L    +           D P++ SVIVVTDR +LD+QL++ +  F +     + +
Sbjct  315  WLAYHLASLHSNE---------DQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETI  365

Query  231  APALKSSDLKAALENGKKIIITTIQKFPFIIDGIEDLGDKRFAVIIDEAHSGQSGIASDK  290
            +    S DLK+A+++ KKIIITT+QKFP I D I++ +++ FA+++DEAHS+Q+G +++K
Sbjct  366  GDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTGSSAQK  425

Query  291  MNQAMGG------------DPDED---DAQDKILAAMQARKMRGNASYFAFTATPKPITL  335
            +++A+++            ++ ED   D QD+I+ ++ ++  ++N S+FAFTATPK  T+
Sbjct  426  LKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTI  485

Query  336  EKFGEQQSDGRFRPFHLYSMKQAIEEGFILDVLANYTTYKGYYEIQKSIEDNPLFDTSKA  395
            E FG +Q+DG ++PFH+YSM+QAIEEGFIL+VL NY TY+  Y I KSIE++P +  + A
Sbjct  486  EMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEA  545

Query  396  QKKLRAYVERSQQTINTKAEIMVENFIDKVVNPKKLRGKGKGMIVTQNIEVAIRYYKAVQ  455
             + +  Y       +  KAEIM+E+F  + V  K ++G+GK+MIVT +   A+RY +  +
Sbjct  546  VRAIAKYQSLHPWVLRQKAEIMIEQF--RSVTQKAVQGRGKAMIVTASRLHAVRYMQEFK  603

Query  456  AELAKRG-NPFKALIAFSGEKEVDGVKYTETEMN------GVPEDKTRSEFDKDEFRLLI  508
              +  +G      L+AFSG  E DG+ YTE  MN       + E++ +  F+ ++F LLI
Sbjct  604  KYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLI  663

Query  509  VANKYLTGFDQPKLCAMYVDKKLQSVLAVQALSRLNRSSPKLGKRTEDLFVLDFFNSIED  568
            VA+KY TGFD+P L +M+VDK+L++V AVQ+LSRLNR+ P  GK   D F+LDF N+ E+
Sbjct  664  VAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMP--GK--TDTFILDFVNTAEE  719

Query  569  IKAAFDPFFTVTTLSEATDVNVLHELKAALDDVGVYEWSEVEEFCKRFFDGEDSE-----  623
            I  AF+PF+  T+L E  ++N++ + ++ L    +Y+  +++   K   ++ + +     
Sbjct  720  IYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLL  779

Query  624  -KLSPLIDVAAERFNTGLELEDPEKIDFKIKAKQFVKIYGQMAAI-MPFEVEAW-EKLF-  679
             +LS+++     R++   +L +  + DF++  ++F K Y  +A I   F+ E   E +F 
Sbjct  780  GRLSSVLRPVISRYS---DLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFT  836

Query  680  -WFLKFLVPK  688
              +LKF+  K
Sbjct  837  GFLLKFIPEK  846

66) APA03_43180 in NC_017118


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  403 bits (1516),  Expect = 3e-113, Method: Compositional matrix adjust.
 Identities = 298/730 (41%), Positives = 475/730 (66%), Gaps = 67/730 (9%)

Query  1    MDMVLFLNGLPIVTLELKNAWTHQTARYHGQKQY-RERDANQTLLRF-GRVLVHMTADTD  58
            +DMVL +NG+P+V+LELKN  T Q    H++ Q+ ++RD+++ +++F +R LV  + D  
Sbjct  142  IDMVLMINGIPLVALELKNQYTGQNVE-HARLQFEQDRDPKELIFQFNSRFLVYFAVDHF  200

Query  59   EVWMATKLAGASTFFLPFNKGHNEg-----agnppnpngHKTSYLWEEVLQPQSLAGIIQ  113
            +V M+TKLA ++T+FLPF++G N       AGNP+NP+G  TSYLWE+VL +  L +I++
Sbjct  201  NVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLWENVLTSYQLLDIFE  260

Query  114  HFVLLEGKKTDPLTKKTLIFPRYHQLNVVRKLLSHAAQTGVGHKYLIQHSAGSGKSNSIT  173
            +F+ LE KK      K LIFPRYHQL+VV+KL+S++ + G G +YLIQHSAGSGKSNSI+
Sbjct  261  RFMNLEEKK------KLLIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIA  314

Query  174  WAAYQLIETYPAKLDLPGVRALDAPLFDSVIVVTDRRLLDKQLRDNIKDFSEVK---NIV  230
            W AY+L    +           D P++ SVIVVTDR +LD+QL++ +  F +     + +
Sbjct  315  WLAYHLASLHSNE---------DQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETI  365

Query  231  APALKSSDLKAALENGKKIIITTIQKFPFIIDGIEDLGDKRFAVIIDEAHSGQSGIASDK  290
            +    S DLK+A+++ KKIIITT+QKFP I D I++ +++ FA+++DEAHS+Q+G +++K
Sbjct  366  GDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTGSSAQK  425

Query  291  MNQAMGG------------DPDED---DAQDKILAAMQARKMRGNASYFAFTATPKPITL  335
            +++A+++            ++ ED   D QD+I+ ++ ++  ++N S+FAFTATPK  T+
Sbjct  426  LKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTI  485

Query  336  EKFGEQQSDGRFRPFHLYSMKQAIEEGFILDVLANYTTYKGYYEIQKSIEDNPLFDTSKA  395
            E FG +Q+DG ++PFH+YSM+QAIEEGFIL+VL NY TY+  Y I KSIE++P +  + A
Sbjct  486  EMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEA  545

Query  396  QKKLRAYVERSQQTINTKAEIMVENFIDKVVNPKKLRGKGKGMIVTQNIEVAIRYYKAVQ  455
             + +  Y       +  KAEIM+E+F  + V  K ++G+GK+MIVT +   A+RY +  +
Sbjct  546  VRAIAKYQSLHPWVLRQKAEIMIEQF--RSVTQKAVQGRGKAMIVTASRLHAVRYMQEFK  603

Query  456  AELAKRG-NPFKALIAFSGEKEVDGVKYTETEMN------GVPEDKTRSEFDKDEFRLLI  508
              +  +G      L+AFSG  E DG+ YTE  MN       + E++ +  F+ ++F LLI
Sbjct  604  KYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLI  663

Query  509  VANKYLTGFDQPKLCAMYVDKKLQSVLAVQALSRLNRSSPKLGKRTEDLFVLDFFNSIED  568
            VA+KY TGFD+P L +M+VDK+L++V AVQ+LSRLNR+ P  GK   D F+LDF N+ E+
Sbjct  664  VAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMP--GK--TDTFILDFVNTAEE  719

Query  569  IKAAFDPFFTVTTLSEATDVNVLHELKAALDDVGVYEWSEVEEFCKRFFDGEDSE-----  623
            I  AF+PF+  T+L E  ++N++ + ++ L    +Y+  +++   K   ++ + +     
Sbjct  720  IYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLL  779

Query  624  -KLSPLIDVAAERFNTGLELEDPEKIDFKIKAKQFVKIYGQMAAI-MPFEVEAW-EKLF-  679
             +LS+++     R++   +L +  + DF++  ++F K Y  +A I   F+ E   E +F 
Sbjct  780  GRLSSVLRPVISRYS---DLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFT  836

Query  680  -WFLKFLVPK  688
              +LKF+  K
Sbjct  837  GFLLKFIPEK  846

67) APA07_43180 in NC_017122


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  403 bits (1516),  Expect = 3e-113, Method: Compositional matrix adjust.
 Identities = 298/730 (41%), Positives = 475/730 (66%), Gaps = 67/730 (9%)

Query  1    MDMVLFLNGLPIVTLELKNAWTHQTARYHGQKQY-RERDANQTLLRF-GRVLVHMTADTD  58
            +DMVL +NG+P+V+LELKN  T Q    H++ Q+ ++RD+++ +++F +R LV  + D  
Sbjct  142  IDMVLMINGIPLVALELKNQYTGQNVE-HARLQFEQDRDPKELIFQFNSRFLVYFAVDHF  200

Query  59   EVWMATKLAGASTFFLPFNKGHNEg-----agnppnpngHKTSYLWEEVLQPQSLAGIIQ  113
            +V M+TKLA ++T+FLPF++G N       AGNP+NP+G  TSYLWE+VL +  L +I++
Sbjct  201  NVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLWENVLTSYQLLDIFE  260

Query  114  HFVLLEGKKTDPLTKKTLIFPRYHQLNVVRKLLSHAAQTGVGHKYLIQHSAGSGKSNSIT  173
            +F+ LE KK      K LIFPRYHQL+VV+KL+S++ + G G +YLIQHSAGSGKSNSI+
Sbjct  261  RFMNLEEKK------KLLIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIA  314

Query  174  WAAYQLIETYPAKLDLPGVRALDAPLFDSVIVVTDRRLLDKQLRDNIKDFSEVK---NIV  230
            W AY+L    +           D P++ SVIVVTDR +LD+QL++ +  F +     + +
Sbjct  315  WLAYHLASLHSNE---------DQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETI  365

Query  231  APALKSSDLKAALENGKKIIITTIQKFPFIIDGIEDLGDKRFAVIIDEAHSGQSGIASDK  290
            +    S DLK+A+++ KKIIITT+QKFP I D I++ +++ FA+++DEAHS+Q+G +++K
Sbjct  366  GDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTGSSAQK  425

Query  291  MNQAMGG------------DPDED---DAQDKILAAMQARKMRGNASYFAFTATPKPITL  335
            +++A+++            ++ ED   D QD+I+ ++ ++  ++N S+FAFTATPK  T+
Sbjct  426  LKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTI  485

Query  336  EKFGEQQSDGRFRPFHLYSMKQAIEEGFILDVLANYTTYKGYYEIQKSIEDNPLFDTSKA  395
            E FG +Q+DG ++PFH+YSM+QAIEEGFIL+VL NY TY+  Y I KSIE++P +  + A
Sbjct  486  EMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEA  545

Query  396  QKKLRAYVERSQQTINTKAEIMVENFIDKVVNPKKLRGKGKGMIVTQNIEVAIRYYKAVQ  455
             + +  Y       +  KAEIM+E+F  + V  K ++G+GK+MIVT +   A+RY +  +
Sbjct  546  VRAIAKYQSLHPWVLRQKAEIMIEQF--RSVTQKAVQGRGKAMIVTASRLHAVRYMQEFK  603

Query  456  AELAKRG-NPFKALIAFSGEKEVDGVKYTETEMN------GVPEDKTRSEFDKDEFRLLI  508
              +  +G      L+AFSG  E DG+ YTE  MN       + E++ +  F+ ++F LLI
Sbjct  604  KYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLI  663

Query  509  VANKYLTGFDQPKLCAMYVDKKLQSVLAVQALSRLNRSSPKLGKRTEDLFVLDFFNSIED  568
            VA+KY TGFD+P L +M+VDK+L++V AVQ+LSRLNR+ P  GK   D F+LDF N+ E+
Sbjct  664  VAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMP--GK--TDTFILDFVNTAEE  719

Query  569  IKAAFDPFFTVTTLSEATDVNVLHELKAALDDVGVYEWSEVEEFCKRFFDGEDSE-----  623
            I  AF+PF+  T+L E  ++N++ + ++ L    +Y+  +++   K   ++ + +     
Sbjct  720  IYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLL  779

Query  624  -KLSPLIDVAAERFNTGLELEDPEKIDFKIKAKQFVKIYGQMAAI-MPFEVEAW-EKLF-  679
             +LS+++     R++   +L +  + DF++  ++F K Y  +A I   F+ E   E +F 
Sbjct  780  GRLSSVLRPVISRYS---DLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFT  836

Query  680  -WFLKFLVPK  688
              +LKF+  K
Sbjct  837  GFLLKFIPEK  846

68) APA12_43180 in NC_017113


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  403 bits (1516),  Expect = 3e-113, Method: Compositional matrix adjust.
 Identities = 298/730 (41%), Positives = 475/730 (66%), Gaps = 67/730 (9%)

Query  1    MDMVLFLNGLPIVTLELKNAWTHQTARYHGQKQY-RERDANQTLLRF-GRVLVHMTADTD  58
            +DMVL +NG+P+V+LELKN  T Q    H++ Q+ ++RD+++ +++F +R LV  + D  
Sbjct  142  IDMVLMINGIPLVALELKNQYTGQNVE-HARLQFEQDRDPKELIFQFNSRFLVYFAVDHF  200

Query  59   EVWMATKLAGASTFFLPFNKGHNEg-----agnppnpngHKTSYLWEEVLQPQSLAGIIQ  113
            +V M+TKLA ++T+FLPF++G N       AGNP+NP+G  TSYLWE+VL +  L +I++
Sbjct  201  NVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLWENVLTSYQLLDIFE  260

Query  114  HFVLLEGKKTDPLTKKTLIFPRYHQLNVVRKLLSHAAQTGVGHKYLIQHSAGSGKSNSIT  173
            +F+ LE KK      K LIFPRYHQL+VV+KL+S++ + G G +YLIQHSAGSGKSNSI+
Sbjct  261  RFMNLEEKK------KLLIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIA  314

Query  174  WAAYQLIETYPAKLDLPGVRALDAPLFDSVIVVTDRRLLDKQLRDNIKDFSEVK---NIV  230
            W AY+L    +           D P++ SVIVVTDR +LD+QL++ +  F +     + +
Sbjct  315  WLAYHLASLHSNE---------DQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETI  365

Query  231  APALKSSDLKAALENGKKIIITTIQKFPFIIDGIEDLGDKRFAVIIDEAHSGQSGIASDK  290
            +    S DLK+A+++ KKIIITT+QKFP I D I++ +++ FA+++DEAHS+Q+G +++K
Sbjct  366  GDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTGSSAQK  425

Query  291  MNQAMGG------------DPDED---DAQDKILAAMQARKMRGNASYFAFTATPKPITL  335
            +++A+++            ++ ED   D QD+I+ ++ ++  ++N S+FAFTATPK  T+
Sbjct  426  LKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTI  485

Query  336  EKFGEQQSDGRFRPFHLYSMKQAIEEGFILDVLANYTTYKGYYEIQKSIEDNPLFDTSKA  395
            E FG +Q+DG ++PFH+YSM+QAIEEGFIL+VL NY TY+  Y I KSIE++P +  + A
Sbjct  486  EMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEA  545

Query  396  QKKLRAYVERSQQTINTKAEIMVENFIDKVVNPKKLRGKGKGMIVTQNIEVAIRYYKAVQ  455
             + +  Y       +  KAEIM+E+F  + V  K ++G+GK+MIVT +   A+RY +  +
Sbjct  546  VRAIAKYQSLHPWVLRQKAEIMIEQF--RSVTQKAVQGRGKAMIVTASRLHAVRYMQEFK  603

Query  456  AELAKRG-NPFKALIAFSGEKEVDGVKYTETEMN------GVPEDKTRSEFDKDEFRLLI  508
              +  +G      L+AFSG  E DG+ YTE  MN       + E++ +  F+ ++F LLI
Sbjct  604  KYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLI  663

Query  509  VANKYLTGFDQPKLCAMYVDKKLQSVLAVQALSRLNRSSPKLGKRTEDLFVLDFFNSIED  568
            VA+KY TGFD+P L +M+VDK+L++V AVQ+LSRLNR+ P  GK   D F+LDF N+ E+
Sbjct  664  VAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMP--GK--TDTFILDFVNTAEE  719

Query  569  IKAAFDPFFTVTTLSEATDVNVLHELKAALDDVGVYEWSEVEEFCKRFFDGEDSE-----  623
            I  AF+PF+  T+L E  ++N++ + ++ L    +Y+  +++   K   ++ + +     
Sbjct  720  IYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLL  779

Query  624  -KLSPLIDVAAERFNTGLELEDPEKIDFKIKAKQFVKIYGQMAAI-MPFEVEAW-EKLF-  679
             +LS+++     R++   +L +  + DF++  ++F K Y  +A I   F+ E   E +F 
Sbjct  780  GRLSSVLRPVISRYS---DLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFT  836

Query  680  -WFLKFLVPK  688
              +LKF+  K
Sbjct  837  GFLLKFIPEK  846

69) APA22_43180 in NC_017126


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  403 bits (1516),  Expect = 3e-113, Method: Compositional matrix adjust.
 Identities = 298/730 (41%), Positives = 475/730 (66%), Gaps = 67/730 (9%)

Query  1    MDMVLFLNGLPIVTLELKNAWTHQTARYHGQKQY-RERDANQTLLRF-GRVLVHMTADTD  58
            +DMVL +NG+P+V+LELKN  T Q    H++ Q+ ++RD+++ +++F +R LV  + D  
Sbjct  142  IDMVLMINGIPLVALELKNQYTGQNVE-HARLQFEQDRDPKELIFQFNSRFLVYFAVDHF  200

Query  59   EVWMATKLAGASTFFLPFNKGHNEg-----agnppnpngHKTSYLWEEVLQPQSLAGIIQ  113
            +V M+TKLA ++T+FLPF++G N       AGNP+NP+G  TSYLWE+VL +  L +I++
Sbjct  201  NVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLWENVLTSYQLLDIFE  260

Query  114  HFVLLEGKKTDPLTKKTLIFPRYHQLNVVRKLLSHAAQTGVGHKYLIQHSAGSGKSNSIT  173
            +F+ LE KK      K LIFPRYHQL+VV+KL+S++ + G G +YLIQHSAGSGKSNSI+
Sbjct  261  RFMNLEEKK------KLLIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIA  314

Query  174  WAAYQLIETYPAKLDLPGVRALDAPLFDSVIVVTDRRLLDKQLRDNIKDFSEVK---NIV  230
            W AY+L    +           D P++ SVIVVTDR +LD+QL++ +  F +     + +
Sbjct  315  WLAYHLASLHSNE---------DQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETI  365

Query  231  APALKSSDLKAALENGKKIIITTIQKFPFIIDGIEDLGDKRFAVIIDEAHSGQSGIASDK  290
            +    S DLK+A+++ KKIIITT+QKFP I D I++ +++ FA+++DEAHS+Q+G +++K
Sbjct  366  GDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTGSSAQK  425

Query  291  MNQAMGG------------DPDED---DAQDKILAAMQARKMRGNASYFAFTATPKPITL  335
            +++A+++            ++ ED   D QD+I+ ++ ++  ++N S+FAFTATPK  T+
Sbjct  426  LKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTI  485

Query  336  EKFGEQQSDGRFRPFHLYSMKQAIEEGFILDVLANYTTYKGYYEIQKSIEDNPLFDTSKA  395
            E FG +Q+DG ++PFH+YSM+QAIEEGFIL+VL NY TY+  Y I KSIE++P +  + A
Sbjct  486  EMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEA  545

Query  396  QKKLRAYVERSQQTINTKAEIMVENFIDKVVNPKKLRGKGKGMIVTQNIEVAIRYYKAVQ  455
             + +  Y       +  KAEIM+E+F  + V  K ++G+GK+MIVT +   A+RY +  +
Sbjct  546  VRAIAKYQSLHPWVLRQKAEIMIEQF--RSVTQKAVQGRGKAMIVTASRLHAVRYMQEFK  603

Query  456  AELAKRG-NPFKALIAFSGEKEVDGVKYTETEMN------GVPEDKTRSEFDKDEFRLLI  508
              +  +G      L+AFSG  E DG+ YTE  MN       + E++ +  F+ ++F LLI
Sbjct  604  KYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLI  663

Query  509  VANKYLTGFDQPKLCAMYVDKKLQSVLAVQALSRLNRSSPKLGKRTEDLFVLDFFNSIED  568
            VA+KY TGFD+P L +M+VDK+L++V AVQ+LSRLNR+ P  GK   D F+LDF N+ E+
Sbjct  664  VAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMP--GK--TDTFILDFVNTAEE  719

Query  569  IKAAFDPFFTVTTLSEATDVNVLHELKAALDDVGVYEWSEVEEFCKRFFDGEDSE-----  623
            I  AF+PF+  T+L E  ++N++ + ++ L    +Y+  +++   K   ++ + +     
Sbjct  720  IYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLL  779

Query  624  -KLSPLIDVAAERFNTGLELEDPEKIDFKIKAKQFVKIYGQMAAI-MPFEVEAW-EKLF-  679
             +LS+++     R++   +L +  + DF++  ++F K Y  +A I   F+ E   E +F 
Sbjct  780  GRLSSVLRPVISRYS---DLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFT  836

Query  680  -WFLKFLVPK  688
              +LKF+  K
Sbjct  837  GFLLKFIPEK  846

70) APA26_43180 in NC_017131


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  403 bits (1516),  Expect = 3e-113, Method: Compositional matrix adjust.
 Identities = 298/730 (41%), Positives = 475/730 (66%), Gaps = 67/730 (9%)

Query  1    MDMVLFLNGLPIVTLELKNAWTHQTARYHGQKQY-RERDANQTLLRF-GRVLVHMTADTD  58
            +DMVL +NG+P+V+LELKN  T Q    H++ Q+ ++RD+++ +++F +R LV  + D  
Sbjct  142  IDMVLMINGIPLVALELKNQYTGQNVE-HARLQFEQDRDPKELIFQFNSRFLVYFAVDHF  200

Query  59   EVWMATKLAGASTFFLPFNKGHNEg-----agnppnpngHKTSYLWEEVLQPQSLAGIIQ  113
            +V M+TKLA ++T+FLPF++G N       AGNP+NP+G  TSYLWE+VL +  L +I++
Sbjct  201  NVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLWENVLTSYQLLDIFE  260

Query  114  HFVLLEGKKTDPLTKKTLIFPRYHQLNVVRKLLSHAAQTGVGHKYLIQHSAGSGKSNSIT  173
            +F+ LE KK      K LIFPRYHQL+VV+KL+S++ + G G +YLIQHSAGSGKSNSI+
Sbjct  261  RFMNLEEKK------KLLIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIA  314

Query  174  WAAYQLIETYPAKLDLPGVRALDAPLFDSVIVVTDRRLLDKQLRDNIKDFSEVK---NIV  230
            W AY+L    +           D P++ SVIVVTDR +LD+QL++ +  F +     + +
Sbjct  315  WLAYHLASLHSNE---------DQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETI  365

Query  231  APALKSSDLKAALENGKKIIITTIQKFPFIIDGIEDLGDKRFAVIIDEAHSGQSGIASDK  290
            +    S DLK+A+++ KKIIITT+QKFP I D I++ +++ FA+++DEAHS+Q+G +++K
Sbjct  366  GDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTGSSAQK  425

Query  291  MNQAMGG------------DPDED---DAQDKILAAMQARKMRGNASYFAFTATPKPITL  335
            +++A+++            ++ ED   D QD+I+ ++ ++  ++N S+FAFTATPK  T+
Sbjct  426  LKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTI  485

Query  336  EKFGEQQSDGRFRPFHLYSMKQAIEEGFILDVLANYTTYKGYYEIQKSIEDNPLFDTSKA  395
            E FG +Q+DG ++PFH+YSM+QAIEEGFIL+VL NY TY+  Y I KSIE++P +  + A
Sbjct  486  EMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEA  545

Query  396  QKKLRAYVERSQQTINTKAEIMVENFIDKVVNPKKLRGKGKGMIVTQNIEVAIRYYKAVQ  455
             + +  Y       +  KAEIM+E+F  + V  K ++G+GK+MIVT +   A+RY +  +
Sbjct  546  VRAIAKYQSLHPWVLRQKAEIMIEQF--RSVTQKAVQGRGKAMIVTASRLHAVRYMQEFK  603

Query  456  AELAKRG-NPFKALIAFSGEKEVDGVKYTETEMN------GVPEDKTRSEFDKDEFRLLI  508
              +  +G      L+AFSG  E DG+ YTE  MN       + E++ +  F+ ++F LLI
Sbjct  604  KYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLI  663

Query  509  VANKYLTGFDQPKLCAMYVDKKLQSVLAVQALSRLNRSSPKLGKRTEDLFVLDFFNSIED  568
            VA+KY TGFD+P L +M+VDK+L++V AVQ+LSRLNR+ P  GK   D F+LDF N+ E+
Sbjct  664  VAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMP--GK--TDTFILDFVNTAEE  719

Query  569  IKAAFDPFFTVTTLSEATDVNVLHELKAALDDVGVYEWSEVEEFCKRFFDGEDSE-----  623
            I  AF+PF+  T+L E  ++N++ + ++ L    +Y+  +++   K   ++ + +     
Sbjct  720  IYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLL  779

Query  624  -KLSPLIDVAAERFNTGLELEDPEKIDFKIKAKQFVKIYGQMAAI-MPFEVEAW-EKLF-  679
             +LS+++     R++   +L +  + DF++  ++F K Y  +A I   F+ E   E +F 
Sbjct  780  GRLSSVLRPVISRYS---DLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFT  836

Query  680  -WFLKFLVPK  688
              +LKF+  K
Sbjct  837  GFLLKFIPEK  846

71) APA32_43180 in NC_017149


> NC_002953_R1|2|G1|49484937|YP_042158.1|Staphylococcus_aureus_subsp._aureus_MSSA476|-|397..3435|-|SAS0025|type 
I restriction 
enzyme protein
Length=1012

 Score =  403 bits (1516),  Expect = 3e-113, Method: Compositional matrix adjust.
 Identities = 298/730 (41%), Positives = 475/730 (66%), Gaps = 67/730 (9%)

Query  1    MDMVLFLNGLPIVTLELKNAWTHQTARYHGQKQY-RERDANQTLLRF-GRVLVHMTADTD  58
            +DMVL +NG+P+V+LELKN  T Q    H++ Q+ ++RD+++ +++F +R LV  + D  
Sbjct  142  IDMVLMINGIPLVALELKNQYTGQNVE-HARLQFEQDRDPKELIFQFNSRFLVYFAVDHF  200

Query  59   EVWMATKLAGASTFFLPFNKGHNEg-----agnppnpngHKTSYLWEEVLQPQSLAGIIQ  113
            +V M+TKLA ++T+FLPF++G N       AGNP+NP+G  TSYLWE+VL +  L +I++
Sbjct  201  NVLMTTKLAKGNTYFLPFDQGSNGPGRVGGAGNPSNPSGYPTSYLWENVLTSYQLLDIFE  260

Query  114  HFVLLEGKKTDPLTKKTLIFPRYHQLNVVRKLLSHAAQTGVGHKYLIQHSAGSGKSNSIT  173
            +F+ LE KK      K LIFPRYHQL+VV+KL+S++ + G G +YLIQHSAGSGKSNSI+
Sbjct  261  RFMNLEEKK------KLLIFPRYHQLDVVKKLISDTQHHGPGKNYLIQHSAGSGKSNSIA  314

Query  174  WAAYQLIETYPAKLDLPGVRALDAPLFDSVIVVTDRRLLDKQLRDNIKDFSEVK---NIV  230
            W AY+L    +           D P++ SVIVVTDR +LD+QL++ +  F +     + +
Sbjct  315  WLAYHLASLHSNE---------DQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETI  365

Query  231  APALKSSDLKAALENGKKIIITTIQKFPFIIDGIEDLGDKRFAVIIDEAHSGQSGIASDK  290
            +    S DLK+A+++ KKIIITT+QKFP I D I++ +++ FA+++DEAHS+Q+G +++K
Sbjct  366  GDNKTSQDLKTAINDQKKIIITTLQKFPVIYDEIDNTAGRSFAILVDEAHSSQTGSSAQK  425

Query  291  MNQAMGG------------DPDED---DAQDKILAAMQARKMRGNASYFAFTATPKPITL  335
            +++A+++            ++ ED   D QD+I+ ++ ++  ++N S+FAFTATPK  T+
Sbjct  426  LKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDNLSFFAFTATPKEKTI  485

Query  336  EKFGEQQSDGRFRPFHLYSMKQAIEEGFILDVLANYTTYKGYYEIQKSIEDNPLFDTSKA  395
            E FG +Q+DG ++PFH+YSM+QAIEEGFIL+VL NY TY+  Y I KSIE++P +  + A
Sbjct  486  EMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKIAKSIEEDPELPKTEA  545

Query  396  QKKLRAYVERSQQTINTKAEIMVENFIDKVVNPKKLRGKGKGMIVTQNIEVAIRYYKAVQ  455
             + +  Y       +  KAEIM+E+F  + V  K ++G+GK+MIVT +   A+RY +  +
Sbjct  546  VRAIAKYQSLHPWVLRQKAEIMIEQF--RSVTQKAVQGRGKAMIVTASRLHAVRYMQEFK  603

Query  456  AELAKRG-NPFKALIAFSGEKEVDGVKYTETEMN------GVPEDKTRSEFDKDEFRLLI  508
              +  +G      L+AFSG  E DG+ YTE  MN       + E++ +  F+ ++F LLI
Sbjct  604  KYIKEKGYTDMDVLVAFSGTVEDDGIEYTEPKMNLTHSGERIQENQLKEAFHSEDFNLLI  663

Query  509  VANKYLTGFDQPKLCAMYVDKKLQSVLAVQALSRLNRSSPKLGKRTEDLFVLDFFNSIED  568
            VA+KY TGFD+P L +M+VDK+L++V AVQ+LSRLNR+ P  GK   D F+LDF N+ E+
Sbjct  664  VAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRTMP--GK--TDTFILDFVNTAEE  719

Query  569  IKAAFDPFFTVTTLSEATDVNVLHELKAALDDVGVYEWSEVEEFCKRFFDGEDSE-----  623
            I  AF+PF+  T+L E  ++N++ + ++ L    +Y+  +++   K   ++ + +     
Sbjct  720  IYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIYNDDDIQTVMKLNRQAKQKQNDQLL  779

Query  624  -KLSPLIDVAAERFNTGLELEDPEKIDFKIKAKQFVKIYGQMAAI-MPFEVEAW-EKLF-  679
             +LS+++     R++   +L +  + DF++  ++F K Y  +A I   F+ E   E +F 
Sbjct  780  GRLSSVLRPVISRYS---DLPEDVQYDFRVTLRNFNKWYNYIAQIDRTFDKELLEESIFT  836

Query  680  -WFLKFLVPK  688
              +LKF+  K
Sbjct  837  GFLLKFIPEK  846