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PAthogenisity Island DataBase (PAI DB)

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Homologs of hrcQa gene of AY597278

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrcQa
( NP_791224.1 )

type III secretion protein HrcQa

NC_004578
(Pseudomonas syringae DC3000)

3e-72

2) hrcQa
( YP_273546.1 )

type III secretion component protein HrcQa

NC_005773
(Pseudomonas syringae 1448A)

6e-65

3) Psyr_1210
( YP_234302.1 )

type III secretion protein HrcQa

NC_007005
(Pseudomonas syringae B728a)

6e-62

4) Pmen_0044
( YP_001185550.1 )

hypothetical protein

NC_009439
(Pseudomonas mendocina ymp)

2e-46

• Sequence Alignments

1) hrcQa in NC_004578


> AY597278|20|G20|51103052|AAT96198.1|Pseudomonas_viridiflava_PNA3.3a|+|19496..20212|hrcQa|-|HrcQa
Length=238

 Score =  264 bits (985),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 150/222 (68%), Positives = 196/222 (89%), Gaps = 0/222 (0%)

Query  1    MSALCLRKVDPLLAKVSRELGAGQCLSFSAKGQQAELTLLPLIASDETPAKGVWLNTAVG  60
            MSAL LRKVDPLLA+ +R LGAGQ L+F A+GQ++ELTLLPL  ++E+PA+G+WL++A G
Sbjct  1    MSALQLRKVDPLLAQATRALGAGQSLAFEAQGQRGELTLLPLAYGQEAPANGIWLDSAAG  60

Query  61   ALCLSDAEALLSLLGDIPLTLGGEQQAWYWQFFNQRLSPTIADLLAPVEPLPQACAELTV  120
            ++CLSDAEA+LSLLGD PLTLGGE+Q WYWQFFNQRLSP+IAD+LAP+EPL +A  + + 
Sbjct  61   PMCLSDAEAVLSLLGDAPLTLGGEHQDWYWQFFNQRLSPSIADVLAPLEPLLDAPDDASF  120

Query  121  GCRIQVRLADQQVHAHLHATPETLLTLLRSAAWQARLKPLDERWSISTPLILGELSLTLE  180
            GCR+QVRL+++ +HAHLH+ ++TLL LL+ A+WQAR KP+D+ W+++TPLI+GEL LTL+
Sbjct  121  GCRVQVRLGGESLHAHLHSPSHTLLRLLHLAPWQARYKPVDDTWPVTTPLIIGELVLTLN  180

Query  181  QLASLRPGDVLLPANCKFDSAGQGFLTLAGRQWAAQTDSQDQ  222
            +LASLRPGDV+LPA C+FDSAGQG L+L+GRQWAA+ DSQ Q
Sbjct  181  ELASLRPGDVVLPARCQFDSAGQGRLALGGRQWAAHVDSQAQ  222

2) hrcQa in NC_005773


> AY597278|20|G20|51103052|AAT96198.1|Pseudomonas_viridiflava_PNA3.3a|+|19496..20212|hrcQa|-|HrcQa
Length=238

 Score =  239 bits (893),  Expect = 6e-65, Method: Compositional matrix adjust.
 Identities = 149/222 (68%), Positives = 192/222 (87%), Gaps = 0/222 (0%)

Query  1    MSALRLRKVDALLAQATRELGAGQSLGFSAAGQDAELTLLPLLADAGEPAGAVWLSTAIG  60
            MSAL+LRKVD+LLAQATR LGAGQSL+F A GQ +ELTLLPL  +   PA ++WL +A G
Sbjct  1    MSALQLRKVDPLLAQATRALGAGQSLAFEAQGQRGELTLLPLAYGQEAPANGIWLDSAAG  60

Query  61   PlllsdaeallsllGDIPLTLGGEQQAWYWQLFNQRLSPTVARLLAPVEPLHNKPQAPTL  120
            P+ LSDAEA+LSLLGD PLTLGGE+Q WYWQ+FNQRLSP++A +LAP+EPL + P+ +++
Sbjct  61   PMCLSDAEAVLSLLGDAPLTLGGEHQDWYWQFFNQRLSPSIADVLAPLEPLLDAPDDASF  120

Query  121  GCRVQIRRGGEQLHAHMHATPDTLLRLLRSASWQARTRTVDESWSVASPLIIGEMSLTRE  180
            GCRVQ+R GGE LHAH+H+ ++TLLRLL+ A+WQAR + VD++W+V++PLIIGE+ LT +
Sbjct  121  GCRVQVRLGGESLHAHLHSPSHTLLRLLHLAPWQARYKPVDDTWPVTTPLIIGELVLTLN  180

Query  181  QIASLRPGDVVLPAHCQFDSAGQGFLSLAGRQWAAQTDQHAQ  222
            ++ASLRPGDVVLPA+CQFDSAGQG L+L+GRQWAA+ D +AQ
Sbjct  181  ELASLRPGDVVLPARCQFDSAGQGRLALGGRQWAAHVDSQAQ  222

3) Psyr_1210 in NC_007005


> AY597278|20|G20|51103052|AAT96198.1|Pseudomonas_viridiflava_PNA3.3a|+|19496..20212|hrcQa|-|HrcQa
Length=238

 Score =  229 bits (855),  Expect = 6e-62, Method: Compositional matrix adjust.
 Identities = 144/221 (66%), Positives = 191/221 (87%), Gaps = 0/221 (0%)

Query  1    MSALRLRKVDALLAQATRALGAGRRLGFSTRGQHAELSLLPQLEDARIPADGVWLNTAVG  60
            MSAL+LRKVD+LLAQATRALGAG+ L+F ++GQ++EL+LLP   +   PA+G+WL++A G
Sbjct  1    MSALQLRKVDPLLAQATRALGAGQSLAFEAQGQRGELTLLPLAYGQEAPANGIWLDSAAG  60

Query  61   PlllsdaeallsllGEIPFSLGGEHQAWYWQLFNQRLSPVIADLLAPVAPFSDAPTEPAI  120
            P+ LSDAEA+LSLLG+ P++LGGEHQ WYWQ+FNQRLSP IAD+LAP+ P+ DAP ++++
Sbjct  61   PMCLSDAEAVLSLLGDAPLTLGGEHQDWYWQFFNQRLSPSIADVLAPLEPLLDAPDDASF  120

Query  121  GCRVHVRLGSERLDAHLHAAPATLLRLLGSADWQVLKRDVDQSWSVATPLIVGELSLTLE  180
            GCRV+VRLG+E L+AHLH+++ TLLRLL  A WQ   + VD++W+V+TPLI+GEL LTL+
Sbjct  121  GCRVQVRLGGESLHAHLHSPSHTLLRLLHLAPWQARYKPVDDTWPVTTPLIIGELVLTLN  180

Query  181  QIAALRPGDVVLPARCRFDSAGQGTVTLAGRQWAACTDQQA  221
            ++A+LRPGDVVLPARC+FDSAGQG ++L+GRQWAA  D QA
Sbjct  181  ELASLRPGDVVLPARCQFDSAGQGRLALGGRQWAAHVDSQA  221

4) Pmen_0044 in NC_009439


> AY597278|20|G20|51103052|AAT96198.1|Pseudomonas_viridiflava_PNA3.3a|+|19496..20212|hrcQa|-|HrcQa
Length=238

 Score =  178 bits (659),  Expect = 2e-46, Method: Compositional matrix adjust.
 Identities = 108/239 (46%), Positives = 177/239 (75%), Gaps = 2/239 (0%)

Query  1    MTPLALGAISSVLAQASRALGAGVTLNFRARGHDGELKLLPM-LPNAPSRAGTWLHTNVG  59
            M++L L  + ++LAQA+RALGAG +L F A+G+ GEL LLP+   + ++  G WL++  G
Sbjct  1    MSALQLRKVDPLLAQATRALGAGQSLAFEAQGQRGELTLLPLAYGQEAPANGIWLDSAAG  60

Query  60   PLCLGDAGAVLSLLGELPVTCEGDDQPWYWQLISQRLSQGVAGALGAISPLDGDAPAGAL  119
            P+CL+DA AVLSLLG+ P+T  G++Q WYWQ+++QRLS ++A+ L+++ PL  DAP +A 
Sbjct  61   PMCLSDAEAVLSLLGDAPLTLGGEHQDWYWQFFNQRLSPSIADVLAPLEPLL-DAPDDAS  119

Query  120  LHAQLHVRLGDERVQAQLAAPPETWLNWLQAPEWQRIRTALHEALVLHIPLQLGQLELSA  179
            +  +++VRLG+E ++A+L +P++T L  L+ + WQ    +++++  +  PL +G+L L+ 
Sbjct  120  FGCRVQVRLGGESLHAHLHSPSHTLLRLLHLAPWQARYKPVDDTWPVTTPLIIGELVLTL  179

Query  180  EQLASLQPGDIVLPAQASFTCDGSGHLALASRYWAAQVSSRGEKLFLNLRHEESSQHEH  238
            ++LASL+PGD+VLPA+  F   G G+LAL++R WAA+V S++++LFL L HEE +++E 
Sbjct  180  NELASLRPGDVVLPARCQFDSAGQGRLALGGRQWAAHVDSQAQQLFLRLSHEEHGHNEY  238