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PAthogenisity Island DataBase (PAI DB)

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Homologs of hrcQb gene of AY597278

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrcQb
( YP_273545.1 )

type III secretion component protein HrcQb

NC_005773
(Pseudomonas syringae 1448A)

2e-26

2) HrcQb
( YP_234301.1 )

type III secretion protein HrcQb

NC_007005
(Pseudomonas syringae B728a)

6e-26

3) hrcQb
( NP_791223.1 )

type III secretion protein HrcQb

NC_004578
(Pseudomonas syringae DC3000)

1e-19

4) Pmen_0045
( YP_001185551.1 )

surface presentation of antigens (SPOA) protein

NC_009439
(Pseudomonas mendocina ymp)

2e-15

• Sequence Alignments

1) hrcQb in NC_005773


> AY597278|21|G21|51103053|AAT96199.1|Pseudomonas_viridiflava_PNA3.3a|+|20034..20594|hrcQb|-|HrcQb
Length=186

 Score =  111 bits (405),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 83/131 (64%), Positives = 107/131 (82%), Gaps = 4/131 (3%)

Query  1    MSTEDLYQEDVEMLDDYEDPSTEQHWSEEDGEPS---GYATAEPDDHAAQEEQDEPPALD  57
            MSTEDLYQE+V+ LDD ++ + E    ++++EPS   +   +E  D+   +   EP+A++
Sbjct  57   MSTEDLYQEEVDYLDDDDETAGEFS-EDDHAEPSNEHSWHNSETADDEQSQAVTEPAAFE  115

Query  58   SLALDLTLRCGelrltlaelrrlDAGTILEVTGISPGHATLCHGEQVVAEGELVDVEGRL  117
            SL+LDLTLRCGEL LTLA LRRLDAGTILEV+GI+PGHATLCHGE+VVAEGELVDV+GRL
Sbjct  116  SLTLDLTLRCGELTLTLAALRRLDAGTILEVAGIAPGHATLCHGERVVAEGELVDVDGRL  175

Query  118  GLQITRLVTRS  128
            GLQITR+VT++
Sbjct  176  GLQITRMVTQP  186

2) HrcQb in NC_007005


> AY597278|21|G21|51103053|AAT96199.1|Pseudomonas_viridiflava_PNA3.3a|+|20034..20594|hrcQb|-|HrcQb
Length=186

 Score =  110 bits (399),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 79/132 (60%), Positives = 104/132 (79%), Gaps = 2/132 (1%)

Query  1    MSTEDLYQDDVEMLDDYEEPVPEQADQQPHDDEHAEQAFGYADEPEHEKQSGDHHESPML  60
            MSTEDLYQ++V+ LDD ++  + +  ++ H +   E++     E  ++ QS    E++ +
Sbjct  57   MSTEDLYQEEVDYLDD-DDETAGEFSEDDHAEPSNEHSW-HNSETADDEQSQAVTEPAAF  114

Query  61   DSLELDLTLRCGelrltlaelrrlDAGTILEVSGIAPGHATLCHGEQVVAEGELVDVEGR  120
            +SL LDLTLRCGEL LTLA LRRLDAGTILEV+GIAPGHATLCHGE+VVAEGELVDV+GR
Sbjct  115  ESLTLDLTLRCGELTLTLAALRRLDAGTILEVAGIAPGHATLCHGERVVAEGELVDVDGR  174

Query  121  LGLQITRLVARS  132
            LGLQITR+V+++
Sbjct  175  LGLQITRMVTQP  186

3) hrcQb in NC_004578


> AY597278|21|G21|51103053|AAT96199.1|Pseudomonas_viridiflava_PNA3.3a|+|20034..20594|hrcQb|-|HrcQb
Length=186

 Score = 89.1 bits (319),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 79/137 (58%), Positives = 108/137 (79%), Gaps = 7/137 (5%)

Query  1    MSTEDLYQDDVESLEDYDDETAeqeheheheqqWaepddeseyaeaepdddeqeeqeeqq  60
            MSTEDLYQ++V+ L+D D+ ++E  ++++ E         +E +  +++  ++E+ +   
Sbjct  57   MSTEDLYQEEVDYLDDDDETAGEFSEDDHAEPS-------NEHSWHNSETADDEQSQAVT  109

Query  61   apSGLDSLALDLTLRCGelrltlaelrrlDAGTILEVGGVAPGYATLCHGERVVAEGELV  120
             P++++SL+LDLTLRCGEL LTLA LRRLDAGTILEV+G+APG ATLCHGERVVAEGELV
Sbjct  110  EPAAFESLTLDLTLRCGELTLTLAALRRLDAGTILEVAGIAPGHATLCHGERVVAEGELV  169

Query  121  DVDGRLGLQITRLAAQP  137
            DVDGRLGLQITR+ +QP
Sbjct  170  DVDGRLGLQITRMVTQP  186

4) Pmen_0045 in NC_009439


> AY597278|21|G21|51103053|AAT96199.1|Pseudomonas_viridiflava_PNA3.3a|+|20034..20594|hrcQb|-|HrcQb
Length=186

 Score = 75.5 bits (267),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 65/131 (50%), Positives = 92/131 (71%), Gaps = 3/131 (2%)

Query  1    MSTEHLSQESLQEMAEMDADALPEGFEERPGEMHLEGQEFAPQDEHASAVEPQQMAALGS  60
            MSTE+L QE ++ +   D D  +  F E       + +    + E A   ++Q ++  ++
Sbjct  57   MSTEDLYQEEVDYLD--DDDETAGEFSEDDHAEPSNEHSW-HNSETADDEQSQAVTEPAA  113

Query  61   IAHLPLQLTLRCGQLTLSVDQLRQLGSGSVLEIHGVAPGHATLCHgervvgegelvdvdg  120
            +  L L+LTLRCG+LTL++  LR+L++G++LE+ G+APGHATLCHGERVV+EGELVDVDG
Sbjct  114  FESLTLDLTLRCGELTLTLAALRRLDAGTILEVAGIAPGHATLCHGERVVAEGELVDVDG  173

Query  121  rLGLQITRMAT  131
            RLGLQITRM T
Sbjct  174  RLGLQITRMVT  184