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PAthogenisity Island DataBase (PAI DB)

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Homologs of unnamed gene of AB462393

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) tnp
( YP_006708799.1 )

transposase for insertion sequence element IS431

NC_018608
(Staphylococcus aureus 08BA02176)

8e-17

100

2) SA957_0041
( YP_008584139.1 )

transposase IS431

NC_022442
(Staphylococcus aureus SA957)

8e-17

100

3) SAPIG0043
( YP_005732853.1 )

hypothetical protein

NC_017333
(Staphylococcus aureus ST398)

8e-17

100

4) tnp
( YP_251961.1 )

transposase for IS431mec

NC_007168
(Staphylococcus haemolyticus JCSC1435)

8e-17

100

5) HMPREF0351_12904
( YP_006377510.1 )

transposase

NC_017963
(Enterococcus faecium DO)

1e-09

6) HMPREF0351_12911
( YP_006377517.1 )

transposase

NC_017963
(Enterococcus faecium DO)

1e-09

7) HMPREF0351_13084
( YP_006377690.1 )

transposase

NC_017963
(Enterococcus faecium DO)

1e-09

8) STND_1028
( YP_006002580.1 )

Transposase for insertion sequence-like element IS1216

NC_017563
(Streptococcus thermophilus ND03)

2e-09

9) pli0042
( NP_569195.1 )

hypothetical protein

NC_003383
(Listeria innocua Clip11262)

3e-06

10) B479_26899
( YP_007232172.1 )

TnpA

NC_019906
(Pseudomonas putida PC9)

4e-06

11) CE0051
( NP_736661.1 )

transposase

NC_004369
(Corynebacterium efficiens YS-314)

5e-06

12) YBT020_29266
( YP_005563643.1 )

integrase catalytic region

NC_017199
(Bacillus thuringiensis YBT-020)

6e-06

• Sequence Alignments

1) tnp in NC_018608


> AB462393|22|G18|229002230|BAH57698.1|Staphylococcus_aureus_PM1|+|16336..16479|-|-|truncated 
transposase for IS431
Length=47

 Score = 80.0 bits (284),  Expect = 8e-17, Method: Compositional matrix adjust.
 Identities = 47/47 (100%), Positives = 47/47 (100%), Gaps = 0/47 (0%)

Query  1   MNYFRYKQFNKDVITVAVGYYLRYALSYRDMSEILRERGVNVHHLTV  47
           MNYFRYKQFNKDVITVAVGYYLRYALSYRDMSEILRERGVNVHHLTV
Sbjct  1   MNYFRYKQFNKDVITVAVGYYLRYALSYRDMSEILRERGVNVHHLTV  47

2) SA957_0041 in NC_022442


> AB462393|22|G18|229002230|BAH57698.1|Staphylococcus_aureus_PM1|+|16336..16479|-|-|truncated 
transposase for IS431
Length=47

 Score = 80.0 bits (284),  Expect = 8e-17, Method: Compositional matrix adjust.
 Identities = 47/47 (100%), Positives = 47/47 (100%), Gaps = 0/47 (0%)

Query  1   MNYFRYKQFNKDVITVAVGYYLRYALSYRDMSEILRERGVNVHHLTV  47
           MNYFRYKQFNKDVITVAVGYYLRYALSYRDMSEILRERGVNVHHLTV
Sbjct  1   MNYFRYKQFNKDVITVAVGYYLRYALSYRDMSEILRERGVNVHHLTV  47

3) SAPIG0043 in NC_017333


> AB462393|22|G18|229002230|BAH57698.1|Staphylococcus_aureus_PM1|+|16336..16479|-|-|truncated 
transposase for IS431
Length=47

 Score = 80.0 bits (284),  Expect = 8e-17, Method: Compositional matrix adjust.
 Identities = 47/47 (100%), Positives = 47/47 (100%), Gaps = 0/47 (0%)

Query  1   MNYFRYKQFNKDVITVAVGYYLRYALSYRDMSEILRERGVNVHHLTV  47
           MNYFRYKQFNKDVITVAVGYYLRYALSYRDMSEILRERGVNVHHLTV
Sbjct  1   MNYFRYKQFNKDVITVAVGYYLRYALSYRDMSEILRERGVNVHHLTV  47

4) tnp in NC_007168


> AB462393|22|G18|229002230|BAH57698.1|Staphylococcus_aureus_PM1|+|16336..16479|-|-|truncated 
transposase for IS431
Length=47

 Score = 80.0 bits (284),  Expect = 8e-17, Method: Compositional matrix adjust.
 Identities = 47/47 (100%), Positives = 47/47 (100%), Gaps = 0/47 (0%)

Query  1   MNYFRYKQFNKDVITVAVGYYLRYALSYRDMSEILRERGVNVHHLTV  47
           MNYFRYKQFNKDVITVAVGYYLRYALSYRDMSEILRERGVNVHHLTV
Sbjct  1   MNYFRYKQFNKDVITVAVGYYLRYALSYRDMSEILRERGVNVHHLTV  47

5) HMPREF0351_12904 in NC_017963


> AB462393|22|G18|229002230|BAH57698.1|Staphylococcus_aureus_PM1|+|16336..16479|-|-|truncated 
transposase for IS431
Length=47

 Score = 56.3 bits (194),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 31/47 (66%), Positives = 39/47 (83%), Gaps = 0/47 (0%)

Query  1   MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVREILYDRGINVSHTTI  47
           MN F+ KQF++DVI VAVGYYLRY LSYR++ EIL +RG+NV H T+
Sbjct  1   MNYFRYKQFNKDVITVAVGYYLRYALSYRDMSEILRERGVNVHHLTV  47

6) HMPREF0351_12911 in NC_017963


> AB462393|22|G18|229002230|BAH57698.1|Staphylococcus_aureus_PM1|+|16336..16479|-|-|truncated 
transposase for IS431
Length=47

 Score = 55.8 bits (192),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 30/47 (64%), Positives = 39/47 (83%), Gaps = 0/47 (0%)

Query  1   MSHFKGKQFQQDVIIVAVGYYLRYNLSYREVREILYDRGINVSHTTI  47
           M+ F+ KQF++DVI VAVGYYLRY LSYR++ EIL +RG+NV H T+
Sbjct  1   MNYFRYKQFNKDVITVAVGYYLRYALSYRDMSEILRERGVNVHHLTV  47

7) HMPREF0351_13084 in NC_017963


> AB462393|22|G18|229002230|BAH57698.1|Staphylococcus_aureus_PM1|+|16336..16479|-|-|truncated 
transposase for IS431
Length=47

 Score = 55.8 bits (192),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 30/47 (64%), Positives = 39/47 (83%), Gaps = 0/47 (0%)

Query  1   MSHFKGKQFQQDVIIVAVGYYLRYNLSYREVREILYDRGINVSHTTI  47
           M+ F+ KQF++DVI VAVGYYLRY LSYR++ EIL +RG+NV H T+
Sbjct  1   MNYFRYKQFNKDVITVAVGYYLRYALSYRDMSEILRERGVNVHHLTV  47

8) STND_1028 in NC_017563


> AB462393|22|G18|229002230|BAH57698.1|Staphylococcus_aureus_PM1|+|16336..16479|-|-|truncated 
transposase for IS431
Length=47

 Score = 55.3 bits (190),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 30/47 (64%), Positives = 39/47 (83%), Gaps = 0/47 (0%)

Query  1   MNHFKGKQFKKDVIIVAVGYYLRYNLSYREVQELLYDRGIDVCHTTI  47
           MN F+ KQF+KDVI VAVGYYLRY LSYR++ E+L +RG++V H T+
Sbjct  1   MNYFRYKQFNKDVITVAVGYYLRYALSYRDMSEILRERGVNVHHLTV  47

9) pli0042 in NC_003383


> AB462393|22|G18|229002230|BAH57698.1|Staphylococcus_aureus_PM1|+|16336..16479|-|-|truncated 
transposase for IS431
Length=47

 Score = 44.5 bits (149),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 24/34 (71%), Positives = 29/34 (86%), Gaps = 0/34 (0%)

Query  1   MNPFKGKQFQQDVIIVAVGYYLRYNLSYREVQEI  34
           MN F+ KQF++DVI VAVGYYLRY LSYR++ EI
Sbjct  1   MNYFRYKQFNKDVITVAVGYYLRYALSYRDMSEI  34

10) B479_26899 in NC_019906


> AB462393|22|G18|229002230|BAH57698.1|Staphylococcus_aureus_PM1|+|16336..16479|-|-|truncated 
transposase for IS431
Length=47

 Score = 44.2 bits (148),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 23/47 (49%), Positives = 37/47 (79%), Gaps = 0/47 (0%)

Query  1   MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTI  47
           MN F+ ++F++D+I  AV  Y +Y++SYR++ E+L ERGVNV+H T+
Sbjct  1   MNYFRYKQFNKDVITVAVGYYLRYALSYRDMSEILRERGVNVHHLTV  47

11) CE0051 in NC_004369


> AB462393|22|G18|229002230|BAH57698.1|Staphylococcus_aureus_PM1|+|16336..16479|-|-|truncated 
transposase for IS431
Length=47

 Score = 44.0 bits (147),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 22/47 (47%), Positives = 33/47 (71%), Gaps = 0/47 (0%)

Query  1   MGIFSGRQFPREIILWAVRWYCRYGVSYRDLEEMMTERGVPVDHTTI  47
           M  F  +QF +++I  AV  Y RY++SYRD+ E++ ERGV V+H T+
Sbjct  1   MNYFRYKQFNKDVITVAVGYYLRYALSYRDMSEILRERGVNVHHLTV  47

12) YBT020_29266 in NC_017199


> AB462393|22|G18|229002230|BAH57698.1|Staphylococcus_aureus_PM1|+|16336..16479|-|-|truncated 
transposase for IS431
Length=47

 Score = 43.7 bits (146),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 18/41 (44%), Positives = 32/41 (79%), Gaps = 0/41 (0%)

Query  5   NLFKWKHYQPDLILLTVRWYLRYNLSFRDLVEMMEERGLSL  45
           N F+ K+++ D+I ++V  YLRY LS+RD+ E++ ERG+++
Sbjct  2   NYFRYKQFNKDVITVAVGYYLRYALSYRDMSEILRERGVNV  42