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Homologs of hrpH gene of NC_004578_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrpH
( NP_791205.1 )

membrane-bound lytic murein transglycosylase D

NC_004578
(Pseudomonas syringae DC3000)

0.0

100

2) Psyr_1189
( YP_234281.1 )

hypothetical protein

NC_007005
(Pseudomonas syringae B728a)

2e-162

3) PSPPH_1269
( YP_273528.1 )

lytic murein transglycosylase

NC_005773
(Pseudomonas syringae 1448A)

5e-155

4) L483_23070
( YP_008096376.1 )

lytic transglycosylase

NC_021491
(Pseudomonas putida H8234)

4e-81

5) mltD
( YP_002441101.1 )

membrane-bound lytic murein transglycosylase D

NC_011770
(Pseudomonas aeruginosa LESB58)

2e-77

• Sequence Alignments

1) hrpH in NC_004578


> NC_004578_P1|22|G15|28868586|NP_791205.1|Pseudomonas_syringae_pv._tomato_str._DC3000|+|17330..18817|hrpH|PSPTO_1378|membrane-bound 
lytic murein transglycosylase D
Length=495

 Score =  665 bits (2515),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 495/495 (100%), Positives = 495/495 (100%), Gaps = 0/495 (0%)

Query  1    MPAVAFPVSSPRLLARAVQIAVLAMGALCVGCQSVDYSPPRQDRPPRLVSGLVYWGGDDK  60
            MPAVAFPVSSPRLLARAVQIAVLAMGALCVGCQSVDYSPPRQDRPPRLVSGLVYWGGDDK
Sbjct  1    MPAVAFPVSSPRLLARAVQIAVLAMGALCVGCQSVDYSPPRQDRPPRLVSGLVYWGGDDK  60

Query  61   EGSRAADKISDLPVYNGEDVWQRVAQRCRLVDGQGMNERIARQRDWLLSNRGFITGASVR  120
            EGSRAADKISDLPVYNGEDVWQRVAQRCRLVDGQGMNERIARQRDWLLSNRGFITGASVR
Sbjct  61   EGSRAADKISDLPVYNGEDVWQRVAQRCRLVDGQGMNERIARQRDWLLSNRGFITGASVR  120

Query  121  ASPYLHFIVERLDERNMPLELALLPMIESSYNPMANSPAAAAGLWQFIPSTGRSFNLHQS  180
            ASPYLHFIVERLDERNMPLELALLPMIESSYNPMANSPAAAAGLWQFIPSTGRSFNLHQS
Sbjct  121  ASPYLHFIVERLDERNMPLELALLPMIESSYNPMANSPAAAAGLWQFIPSTGRSFNLHQS  180

Query  181  ATYDARRDVVASSKAAMDYLTRLHDQFNNDWLLALAAYNAGEGTVGRAIEANRRRGLPVD  240
            ATYDARRDVVASSKAAMDYLTRLHDQFNNDWLLALAAYNAGEGTVGRAIEANRRRGLPVD
Sbjct  181  ATYDARRDVVASSKAAMDYLTRLHDQFNNDWLLALAAYNAGEGTVGRAIEANRRRGLPVD  240

Query  241  YWNLNLPKETQDYVPRLLALSMVVRNPNAYGVKLTPVANTPYFDVVELNHAVDLTQLAAT  300
            YWNLNLPKETQDYVPRLLALSMVVRNPNAYGVKLTPVANTPYFDVVELNHAVDLTQLAAT
Sbjct  241  YWNLNLPKETQDYVPRLLALSMVVRNPNAYGVKLTPVANTPYFDVVELNHAVDLTQLAAT  300

Query  301  AGVDEGQLLRLNSAFLRKKTFDGPGRLLIPKTQNRVLTTSIARITGESPVTASIPLVTPS  360
            AGVDEGQLLRLNSAFLRKKTFDGPGRLLIPKTQNRVLTTSIARITGESPVTASIPLVTPS
Sbjct  301  AGVDEGQLLRLNSAFLRKKTFDGPGRLLIPKTQNRVLTTSIARITGESPVTASIPLVTPS  360

Query  361  AIVKraaerlpapapvaerpvrvaerpplpKPVQSAQLAENLPSPKTAQPLPVaqqptap  420
            AIVKRAAERLPAPAPVAERPVRVAERPPLPKPVQSAQLAENLPSPKTAQPLPVAQQPTAP
Sbjct  361  AIVKRAAERLPAPAPVAERPVRVAERPPLPKPVQSAQLAENLPSPKTAQPLPVAQQPTAP  420

Query  421  ealqpapaaesapaveiaqSAPVVEPDPLTNRIQLprirddrssprkrdddEYRSGPREL  480
            EALQPAPAAESAPAVEIAQSAPVVEPDPLTNRIQLPRIRDDRSSPRKRDDDEYRSGPREL
Sbjct  421  EALQPAPAAESAPAVEIAQSAPVVEPDPLTNRIQLPRIRDDRSSPRKRDDDEYRSGPREL  480

Query  481  PTGPRVVVFASDPRQ  495
            PTGPRVVVFASDPRQ
Sbjct  481  PTGPRVVVFASDPRQ  495

2) Psyr_1189 in NC_007005


> NC_004578_P1|22|G15|28868586|NP_791205.1|Pseudomonas_syringae_pv._tomato_str._DC3000|+|17330..18817|hrpH|PSPTO_1378|membrane-bound 
lytic murein transglycosylase D
Length=495

 Score =  565 bits (2134),  Expect = 2e-162, Method: Compositional matrix adjust.
 Identities = 364/516 (71%), Positives = 418/516 (82%), Gaps = 30/516 (5%)

Query  1    MAAVALHVSSPRLLARSVQIAVLALGALCVGCQSVDDSPSRLDRLPRLVAGLGYRSADAQ  60
            M+AVA+ VSSPRLLAR+VQIAVLA+GALCVGCQSVD SP+R DR PRLV+GL Y+++D +
Sbjct  1    MPAVAFPVSSPRLLARAVQIAVLAMGALCVGCQSVDYSPPRQDRPPRLVSGLVYWGGDDK  60

Query  61   ADPLAATTVADLPVYNGEDVWQRVAQRCRLVDGQGVNERIARQRDWLLNNRGFLTGASKR  120
             ++ AA  ++DLPVYNGEDVWQRVAQRCRLVDGQG+NERIARQRDWLL+NRGF+TGAS R
Sbjct  61   EGSRAADKISDLPVYNGEDVWQRVAQRCRLVDGQGMNERIARQRDWLLSNRGFITGASVR  120

Query  121  ATPYLHFIVERLDERNMPLELALLPMIESSYNPLANSPAAAAGLWQFIPSTGRQFNLNQS  180
            A+PYLHFIVERLDERNMPLELALLPMIESSYNP+ANSPAAAAGLWQFIPSTGR FNL+QS
Sbjct  121  ASPYLHFIVERLDERNMPLELALLPMIESSYNPMANSPAAAAGLWQFIPSTGRSFNLHQS  180

Query  181  ATYDARRDVVASSKAAMDYLTRLHDQFNNDWLLALAAYNAGEGTVARAIDANRRRGMPVD  240
            ATYDARRDVVASSKAAMDYLTRLHDQFNNDWLLALAAYNAGEGTV+RAI+ANRRRG+PVD
Sbjct  181  ATYDARRDVVASSKAAMDYLTRLHDQFNNDWLLALAAYNAGEGTVGRAIEANRRRGLPVD  240

Query  241  YWHLNLPRETQDYVPRLLALSLVVRNPGAYGVQLTPVANMPYFDVVELNHTVDLTQLAAT  300
            YW+LNLP+ETQDYVPRLLALS+VVRNP AYGV+LTPVAN PYFDVVELNH+VDLTQLAAT
Sbjct  241  YWNLNLPKETQDYVPRLLALSMVVRNPNAYGVKLTPVANTPYFDVVELNHAVDLTQLAAT  300

Query  301  TGVDEAQLLRLNPAFLRKKTPDGPGRLLIPKTHTQVLTAGIERITGESPTTAVIPASPGK  360
            +GVDE+QLLRLN+AFLRKKT DGPGRLLIPKT+ +VLT++I RITGESP TA IP     
Sbjct  301  AGVDEGQLLRLNSAFLRKKTFDGPGRLLIPKTQNRVLTTSIARITGESPVTASIPLVTPS  360

Query  361  RVIEREPSSQVAERAPTPEPLQAAGREQTAGLMQVLEREPAPESVQPVRREPQPKVVQVA  420
             ++ R      AER P+P P+           ++V ER P P +VQ+          Q+A
Sbjct  361  AIVKRA-----AERLPAPAPVAERP-------VRVAERPPLPKPVQS---------AQLA  399

Query  421  RQEPLPGPAQPVQAAEQVTVSDPIQPARQ---------ASSQATNERSLLDRRIQKRLYI  471
             + P P  AQP+  A+Q T ++++QPA           A S +  E   L  RIQ     
Sbjct  400  ENLPSPKTAQPLPVAQQPTAPEALQPAPAAESAPAVEIAQSAPVVEPDPLTNRIQLPRIR  459

Query  472  DDRSSPRKRDEIAYRDEPRELPNGPRVVVYASDPRQ  507
            DDRSSPRKRD+  YR  PRELP GPRVVV+ASDPRQ
Sbjct  460  DDRSSPRKRDDDEYRSGPRELPTGPRVVVFASDPRQ  495

3) PSPPH_1269 in NC_005773


> NC_004578_P1|22|G15|28868586|NP_791205.1|Pseudomonas_syringae_pv._tomato_str._DC3000|+|17330..18817|hrpH|PSPTO_1378|membrane-bound 
lytic murein transglycosylase D
Length=495

 Score =  541 bits (2040),  Expect = 5e-155, Method: Compositional matrix adjust.
 Identities = 369/507 (73%), Positives = 431/507 (86%), Gaps = 33/507 (6%)

Query  1    MPAVASIVSSPrllaraiqiallalGSLCVGCQSVDYSAPRQERNPRLVTGLVYWGGDDQ  60
            MPAVA  VSSPRLLARA+QIA+LA+G+LCVGCQSVDYS+PRQ+R PRLV+GLVYWGGDD+
Sbjct  1    MPAVAFPVSSPRLLARAVQIAVLAMGALCVGCQSVDYSPPRQDRPPRLVSGLVYWGGDDK  60

Query  61   DGARAAEKISDLPVYNGEDVWQRVAQRSRLADGQGMNERIARQRDWLLSNRGFISGASVR  120
            +G+RAA+KISDLPVYNGEDVWQRVAQR RL DGQGMNERIARQRDWLLSNRGFI+GASVR
Sbjct  61   EGSRAADKISDLPVYNGEDVWQRVAQRCRLVDGQGMNERIARQRDWLLSNRGFITGASVR  120

Query  121  ASPYLHFIVERLDERNMPLELALLPMIESSYNPMANSPAAAAGLWQFMPSTGRSFNLYQS  180
            ASPYLHFIVERLDERNMPLELALLPMIESSYNPMANSPAAAAGLWQF+PSTGRSFNL QS
Sbjct  121  ASPYLHFIVERLDERNMPLELALLPMIESSYNPMANSPAAAAGLWQFIPSTGRSFNLHQS  180

Query  181  ATYDARRDVVASSKAAMDYLTRLHDQFNNDWLLALAAYNSGEGTVGRAIEANRRRGLPVD  240
            ATYDARRDVVASSKAAMDYLTRLHDQFNNDWLLALAAYN+GEGTVGRAIEANRRRGLPVD
Sbjct  181  ATYDARRDVVASSKAAMDYLTRLHDQFNNDWLLALAAYNAGEGTVGRAIEANRRRGLPVD  240

Query  241  YWHLNLPRETLDYVPRLLALSLIVRNAATYGVKLTPVANTPYFDVVELNHAVDLTQLAAT  300
            YW+LNLP+ET DYVPRLLALS++VRN+ +YGVKLTPVANTPYFDVVELNHAVDLTQLAAT
Sbjct  241  YWNLNLPKETQDYVPRLLALSMVVRNPNAYGVKLTPVANTPYFDVVELNHAVDLTQLAAT  300

Query  301  AGVDEGQLLRLNSAFLSKKTPDGPGRLLLPKTQKQVLTAGIARITGESPVTTG----TPQ  356
            AGVDEGQLLRLNSAFL KKT DGPGRLL+PKTQ++VLT++IARITGESPVT++    TP 
Sbjct  301  AGVDEGQLLRLNSAFLRKKTFDGPGRLLIPKTQNRVLTTSIARITGESPVTASIPLVTPS  360

Query  357  RIDKPVVEHLALPQTAQpvrvvertpvprpAQPVEVAERAPVPNPVEPMRVAEQSSAPQT  416
             I K   E+L+ P                + +PV VAER+P+P+PV++ ++AE+ ++P+T
Sbjct  361  AIVKRAAERLPAPAPV-------------AERPVRVAERPPLPKPVQSAQLAENLPSPKT  407

Query  417  PPLVPAVEHKEPP----------------MTPRTPAREALSVPSVLQAGRYVddrssprr  460
            +  +P  ++  +P                ++  +P  E+ ++ + +Q  R  DDRSSPR+
Sbjct  408  AQPLPVAQQPTAPEALQPAPAAESAPAVEIAQSAPVVEPDPLTNRIQLPRIRDDRSSPRK  467

Query  461  rddiedrTGPRELPSGPRIVVYASGSR  487
            RDD E R+GPRELP+GPR+VV+AS++R
Sbjct  468  RDDDEYRSGPRELPTGPRVVVFASDPR  494

4) L483_23070 in NC_021491


> NC_004578_P1|22|G15|28868586|NP_791205.1|Pseudomonas_syringae_pv._tomato_str._DC3000|+|17330..18817|hrpH|PSPTO_1378|membrane-bound 
lytic murein transglycosylase D
Length=495

 Score =  295 bits (1105),  Expect = 4e-81, Method: Compositional matrix adjust.
 Identities = 179/350 (52%), Positives = 254/350 (73%), Gaps = 32/350 (9%)

Query  14   LTRLAQISALALAATLVGCQSTRQLDDSESVRAHNYQARIKHKPAPLLV-----------  62
            L+R  QI+ LA++A  VGCQS             +Y +  +++P+ L+            
Sbjct  14   LARAVQIAVLAMGALCVGCQSV------------DYSPPRQDRPPRLVSGLVYWGGDDKE  61

Query  63   --KPVEKTP-------QDVWERMRQGFALQDSIDVNPRIEQQRLWFASNPTFIESAGERG  113
              ++ +K +       +DVW+R+ Q   L D+ ++N RI +QR W+ SN  FI +A+ R+
Sbjct  62   GSRAADKISDLPVYNGEDVWQRVAQRCRLVDGQGMNERIARQRDWLLSNRGFITGASVRA  121

Query  114  SLYLHYIVERLEERDMPLELALLPAIESAYNPMAYSRASAAGMWQFMPATGRHFNLRQTN  173
            S YLH+IVERL+ER+MPLELALLP IES+YNPMA S A+AAG+WQF+P+TGR FNL+Q+ 
Sbjct  122  SPYLHFIVERLDERNMPLELALLPMIESSYNPMANSPAAAAGLWQFIPSTGRSFNLHQSA  181

Query  174  FYDGRRDITASTNAALDYLTRLHDMFNGDWLLALAAYNAGEGTVSRAMERNERLGLPTDY  233
             YD+RRD+ AS++AA+DYLTRLHD FN DWLLALAAYNAGEGTV+RA+E N R GLP DY
Sbjct  182  TYDARRDVVASSKAAMDYLTRLHDQFNNDWLLALAAYNAGEGTVGRAIEANRRRGLPVDY  241

Query  234  WNLPLPQETRDYVPKLLALSQVVLTPEAYGVNLNPIANEPYFEAVAINDRLDLSRVAAFA  293
            WNL LP+ET+DYVP+LLALS VV  P+AYGV+L P+AN PYF+ V +N+ +DL+++AA A
Sbjct  242  WNLNLPKETQDYVPRLLALSMVVRNPNAYGVKLTPVANTPYFDVVELNHAVDLTQLAATA  301

Query  294  NIDEDELIQLNPAFKKRMTVDGPQQLLVPTAKAQLLSDSLSNLKPEQLVS  343
             +DE++L++LN+AF ++ T DGP +LL+P ++ ++L+ S++ +  E  V+
Sbjct  302  GVDEGQLLRLNSAFLRKKTFDGPGRLLIPKTQNRVLTTSIARITGESPVT  351

5) mltD in NC_011770


> NC_004578_P1|22|G15|28868586|NP_791205.1|Pseudomonas_syringae_pv._tomato_str._DC3000|+|17330..18817|hrpH|PSPTO_1378|membrane-bound 
lytic murein transglycosylase D
Length=495

 Score =  283 bits (1060),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 170/390 (44%), Positives = 272/390 (70%), Gaps = 11/390 (2%)

Query  14   LARAVRVSILLIAGALVGCQGS--GQIKGEaqakaarpgaraVDVQFNPSWLHTQPGQNA  71
            LARAV++++L +++  VGCQ+   +  + +  ++         + + + S+   + ++ +
Sbjct  14   LARAVQIAVLAMGALCVGCQSVDYSPPRQDRPPRLVSGLVYWGGDDKEGSRAADKISDLP  73

Query  72   AYN--DIWDRMRDGFQLQDAISTNPRIERQRLWFLSNQSFLEQSSARGSLYMHYVVERLE  129
             YN  D+W+R+ +  +L D+ + N RI RQR W+LSN++F+  +S R+S Y+H++VERL+
Sbjct  74   VYNGEDVWQRVAQRCRLVDGQGMNERIARQRDWLLSNRGFITGASVRASPYLHFIVERLD  133

Query  130  ERNMPLELALLPVIESAYNPFALSRSNAAGLWQFIPATGQHFNLRQTNFYDGRRDITAST  189
            ERNMPLELALLP+IES+YNP A S + AAGLWQFIP+TG+ FNL+Q+  YD+RRD+ AS+
Sbjct  134  ERNMPLELALLPMIESSYNPMANSPAAAAGLWQFIPSTGRSFNLHQSATYDARRDVVASS  193

Query  190  NAALTYLERLHDMFNGDWMLALAAYNAGEGTVSRAIERNEKLGLPTDYWNLPLPQETQDY  249
            +AA+ YL RLHD FN DW+LALAAYNAGEGTV+RAIE N + GLP DYWNL LP+ETQDY
Sbjct  194  KAAMDYLTRLHDQFNNDWLLALAAYNAGEGTVGRAIEANRRRGLPVDYWNLNLPKETQDY  253

Query  250  VPKLLALSQIVMAPDSYGISLNPINNEPYFQAVRVKRGIDLSSVAALANLDEDELYQLNP  309
            VP+LLALS +V  P++YG+ L P+ N PYF+ V +++++DL+ +AA A +DE++L +LN+
Sbjct  254  VPRLLALSMVVRNPNAYGVKLTPVANTPYFDVVELNHAVDLTQLAATAGVDEGQLLRLNS  313

Query  310  AYKRRVTMDGPQQLLVPMEKAAFLTASLDTLKPKEVTAWQQYRVRSGDSLHSIANRYRIT  369
            A+ R+ T DGP +LL+P  +   LT+S+  +         +  V ++ +L + +   + +
Sbjct  314  AFLRKKTFDGPGRLLIPKTQNRVLTTSIARIT-------GESPVTASIPLVTPSAIVKRA  366

Query  370  VAELKSANRLSSNHLRKGQQLSIPGQIAGG  399
               L ++  ++   +R +++ ++P  + ++
Sbjct  367  AERLPAPAPVAERPVRVAERPPLPKPVQSA  396