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Homologs of escF gene of JQ747523

17

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) escF
( YP_003236072.1 )

T3SS structure protein EscF

NC_013364
(Escherichia coli 11128)

2e-26

88

2) escF
( YP_003232169.1 )

T3SS structure protein EscF

NC_013361
(Escherichia coli 11368)

2e-26

88

3) escF
( YP_003223459.1 )

T3SS structure protein EscF

NC_013353
(Escherichia coli 12009)

2e-26

88

4) escF
( YP_003501858.1 )

type III secretion apparatus needle protein

NC_013941
(Escherichia coli CB9615)

2e-26

88

5) escF
( YP_002331394.1 )

T3SS structure protein EscF

NC_011601
(Escherichia coli E2348/69)

2e-26

88

6) eprI
( YP_002273151.1 )

type III secretion apparatus needle protein

NC_011353
(Escherichia coli EC4115)

2e-26

88

7) escF
( NP_290252.1 )

hypothetical protein

NC_002655
(Escherichia coli EDL933)

2e-26

88

8) ECO55CA74_21150
( YP_006161335.1 )

type III secretion apparatus needle protein

NC_017656
(Escherichia coli RM12579)

2e-26

88

9) ECs4552
( NP_312579.1 )

protein EscF

NC_002695
(Escherichia coli Sakai)

2e-26

88

10) escF
( YP_003080464.1 )

LEE-encoded type III secretion system component

NC_013008
(Escherichia coli TW14359)

2e-26

88

11) CDCO157_4286
( YP_006315152.1 )

protein EscF

NC_017906
(Escherichia coli Xuzhou21)

2e-26

88

12) escF
( YP_003366486.1 )

T3SS structural protein EscF

NC_013716
(Citrobacter rodentium ICC168)

1e-21

62

13) Sbal175_2406
( YP_006020963.1 )

type III secretion system needle protein

NC_017571
(Shewanella baltica BA175)

2e-10

43

14) Sbal117_2075
( YP_006037306.1 )

type III secretion system needle protein

NC_017579
(Shewanella baltica OS117)

2e-10

43

15) Sbal_1959
( YP_001050332.1 )

type III secretion system needle protein

NC_009052
(Shewanella baltica OS155)

2e-10

43

16) Sbal195_2263
( YP_001554691.1 )

type III secretion system needle protein

NC_009997
(Shewanella baltica OS195)

3e-10

41

17) Sbal678_2273
( YP_005273480.1 )

type III secretion system needle protein

NC_016901
(Shewanella baltica OS678)

3e-10

41

• Sequence Alignments

1) escF in NC_013353


> JQ747523|23|G21|397781952|AFO66347.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|20695..20916|escF|SESS1296_03618|putative 
LEE-encoded type III secretion system structural 
component
Length=73

 Score =  111 bits (405),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 64/73 (88%), Positives = 72/73 (99%), Gaps = 0/73 (0%)

Query  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60
           MNLSEIT+QMG VGKTLS+SVP+LLNS+DLVNDP+KM+ELQFAVQQYSAY+NVESGMLKT
Sbjct  1   MNLSEITDQMGKVGKTLSNSVPDLLNSSDLVNDPDKMIELQFAVQQYSAYINVESGMLKT  60

Query  61  IKDLVSTISNRSF  73
           IKDLVSTISNR+F
Sbjct  61  IKDLVSTISNRTF  73

2) escF in NC_013364


> JQ747523|23|G21|397781952|AFO66347.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|20695..20916|escF|SESS1296_03618|putative 
LEE-encoded type III secretion system structural 
component
Length=73

 Score =  111 bits (405),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 64/73 (88%), Positives = 72/73 (99%), Gaps = 0/73 (0%)

Query  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60
           MNLSEIT+QMG VGKTLS+SVP+LLNS+DLVNDP+KM+ELQFAVQQYSAY+NVESGMLKT
Sbjct  1   MNLSEITDQMGKVGKTLSNSVPDLLNSSDLVNDPDKMIELQFAVQQYSAYINVESGMLKT  60

Query  61  IKDLVSTISNRSF  73
           IKDLVSTISNR+F
Sbjct  61  IKDLVSTISNRTF  73

3) escF in NC_011601


> JQ747523|23|G21|397781952|AFO66347.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|20695..20916|escF|SESS1296_03618|putative 
LEE-encoded type III secretion system structural 
component
Length=73

 Score =  111 bits (405),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 64/73 (88%), Positives = 72/73 (99%), Gaps = 0/73 (0%)

Query  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60
           MNLSEIT+QMG VGKTLS+SVP+LLNS+DLVNDP+KM+ELQFAVQQYSAY+NVESGMLKT
Sbjct  1   MNLSEITDQMGKVGKTLSNSVPDLLNSSDLVNDPDKMIELQFAVQQYSAYINVESGMLKT  60

Query  61  IKDLVSTISNRSF  73
           IKDLVSTISNR+F
Sbjct  61  IKDLVSTISNRTF  73

4) eprI in NC_011353


> JQ747523|23|G21|397781952|AFO66347.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|20695..20916|escF|SESS1296_03618|putative 
LEE-encoded type III secretion system structural 
component
Length=73

 Score =  111 bits (405),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 64/73 (88%), Positives = 72/73 (99%), Gaps = 0/73 (0%)

Query  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60
           MNLSEIT+QMG VGKTLS+SVP+LLNS+DLVNDP+KM+ELQFAVQQYSAY+NVESGMLKT
Sbjct  1   MNLSEITDQMGKVGKTLSNSVPDLLNSSDLVNDPDKMIELQFAVQQYSAYINVESGMLKT  60

Query  61  IKDLVSTISNRSF  73
           IKDLVSTISNR+F
Sbjct  61  IKDLVSTISNRTF  73

5) escF in NC_002655


> JQ747523|23|G21|397781952|AFO66347.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|20695..20916|escF|SESS1296_03618|putative 
LEE-encoded type III secretion system structural 
component
Length=73

 Score =  111 bits (405),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 64/73 (88%), Positives = 72/73 (99%), Gaps = 0/73 (0%)

Query  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60
           MNLSEIT+QMG VGKTLS+SVP+LLNS+DLVNDP+KM+ELQFAVQQYSAY+NVESGMLKT
Sbjct  1   MNLSEITDQMGKVGKTLSNSVPDLLNSSDLVNDPDKMIELQFAVQQYSAYINVESGMLKT  60

Query  61  IKDLVSTISNRSF  73
           IKDLVSTISNR+F
Sbjct  61  IKDLVSTISNRTF  73

6) ECs4552 in NC_002695


> JQ747523|23|G21|397781952|AFO66347.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|20695..20916|escF|SESS1296_03618|putative 
LEE-encoded type III secretion system structural 
component
Length=73

 Score =  111 bits (405),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 64/73 (88%), Positives = 72/73 (99%), Gaps = 0/73 (0%)

Query  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60
           MNLSEIT+QMG VGKTLS+SVP+LLNS+DLVNDP+KM+ELQFAVQQYSAY+NVESGMLKT
Sbjct  1   MNLSEITDQMGKVGKTLSNSVPDLLNSSDLVNDPDKMIELQFAVQQYSAYINVESGMLKT  60

Query  61  IKDLVSTISNRSF  73
           IKDLVSTISNR+F
Sbjct  61  IKDLVSTISNRTF  73

7) escF in NC_013008


> JQ747523|23|G21|397781952|AFO66347.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|20695..20916|escF|SESS1296_03618|putative 
LEE-encoded type III secretion system structural 
component
Length=73

 Score =  111 bits (405),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 64/73 (88%), Positives = 72/73 (99%), Gaps = 0/73 (0%)

Query  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60
           MNLSEIT+QMG VGKTLS+SVP+LLNS+DLVNDP+KM+ELQFAVQQYSAY+NVESGMLKT
Sbjct  1   MNLSEITDQMGKVGKTLSNSVPDLLNSSDLVNDPDKMIELQFAVQQYSAYINVESGMLKT  60

Query  61  IKDLVSTISNRSF  73
           IKDLVSTISNR+F
Sbjct  61  IKDLVSTISNRTF  73

8) escF in NC_013361


> JQ747523|23|G21|397781952|AFO66347.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|20695..20916|escF|SESS1296_03618|putative 
LEE-encoded type III secretion system structural 
component
Length=73

 Score =  111 bits (405),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 64/73 (88%), Positives = 72/73 (99%), Gaps = 0/73 (0%)

Query  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60
           MNLSEIT+QMG VGKTLS+SVP+LLNS+DLVNDP+KM+ELQFAVQQYSAY+NVESGMLKT
Sbjct  1   MNLSEITDQMGKVGKTLSNSVPDLLNSSDLVNDPDKMIELQFAVQQYSAYINVESGMLKT  60

Query  61  IKDLVSTISNRSF  73
           IKDLVSTISNR+F
Sbjct  61  IKDLVSTISNRTF  73

9) escF in NC_013941


> JQ747523|23|G21|397781952|AFO66347.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|20695..20916|escF|SESS1296_03618|putative 
LEE-encoded type III secretion system structural 
component
Length=73

 Score =  111 bits (405),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 64/73 (88%), Positives = 72/73 (99%), Gaps = 0/73 (0%)

Query  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60
           MNLSEIT+QMG VGKTLS+SVP+LLNS+DLVNDP+KM+ELQFAVQQYSAY+NVESGMLKT
Sbjct  1   MNLSEITDQMGKVGKTLSNSVPDLLNSSDLVNDPDKMIELQFAVQQYSAYINVESGMLKT  60

Query  61  IKDLVSTISNRSF  73
           IKDLVSTISNR+F
Sbjct  61  IKDLVSTISNRTF  73

10) ECO55CA74_21150 in NC_017656


> JQ747523|23|G21|397781952|AFO66347.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|20695..20916|escF|SESS1296_03618|putative 
LEE-encoded type III secretion system structural 
component
Length=73

 Score =  111 bits (405),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 64/73 (88%), Positives = 72/73 (99%), Gaps = 0/73 (0%)

Query  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60
           MNLSEIT+QMG VGKTLS+SVP+LLNS+DLVNDP+KM+ELQFAVQQYSAY+NVESGMLKT
Sbjct  1   MNLSEITDQMGKVGKTLSNSVPDLLNSSDLVNDPDKMIELQFAVQQYSAYINVESGMLKT  60

Query  61  IKDLVSTISNRSF  73
           IKDLVSTISNR+F
Sbjct  61  IKDLVSTISNRTF  73

11) CDCO157_4286 in NC_017906


> JQ747523|23|G21|397781952|AFO66347.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|20695..20916|escF|SESS1296_03618|putative 
LEE-encoded type III secretion system structural 
component
Length=73

 Score =  111 bits (405),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 64/73 (88%), Positives = 72/73 (99%), Gaps = 0/73 (0%)

Query  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60
           MNLSEIT+QMG VGKTLS+SVP+LLNS+DLVNDP+KM+ELQFAVQQYSAY+NVESGMLKT
Sbjct  1   MNLSEITDQMGKVGKTLSNSVPDLLNSSDLVNDPDKMIELQFAVQQYSAYINVESGMLKT  60

Query  61  IKDLVSTISNRSF  73
           IKDLVSTISNR+F
Sbjct  61  IKDLVSTISNRTF  73

12) escF in NC_013716


> JQ747523|23|G21|397781952|AFO66347.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|20695..20916|escF|SESS1296_03618|putative 
LEE-encoded type III secretion system structural 
component
Length=73

 Score = 96.0 bits (345),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 45/73 (62%), Positives = 70/73 (96%), Gaps = 0/73 (0%)

Query  1   MNLTQITEDMGNIADTLAEPVPKLLSNPDLVNDPQKMLQLSFSINQFSSYINLESGMIKT  60
           MNL++IT++MG+++ TL+++VP LL+++DLVNDP+KM++L F+++Q+S+YIN+ESGM+KT
Sbjct  1   MNLSEITDQMGKVGKTLSNSVPDLLNSSDLVNDPDKMIELQFAVQQYSAYINVESGMLKT  60

Query  61  VKDLISTISNRTF  73
           +KDL+STISNRTF
Sbjct  61  IKDLVSTISNRTF  73

13) Sbal175_2406 in NC_017571


> JQ747523|23|G21|397781952|AFO66347.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|20695..20916|escF|SESS1296_03618|putative 
LEE-encoded type III secretion system structural 
component
Length=73

 Score = 58.7 bits (203),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 30/71 (43%), Positives = 53/71 (75%), Gaps = 1/71 (1%)

Query  1   MDLSAIVNQLSQLSTRSAQEVQAKMSAGDL-NDPDKMIKAQFAMQQYSNFVGYESAMIKA  59
           M+LS I +Q+++++   ++ V   ++++DL NDPDKMI  QFA+QQYS ++  ES+M+K+
Sbjct  1   MNLSEITDQMGKVGKTLSNSVPDLLNSSDLVNDPDKMIELQFAVQQYSAYINVESGMLKT  60

Query  60  IKDMIQGIISK  70
           IKD++  I ++
Sbjct  61  IKDLVSTISNR  71

14) Sbal117_2075 in NC_017579


> JQ747523|23|G21|397781952|AFO66347.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|20695..20916|escF|SESS1296_03618|putative 
LEE-encoded type III secretion system structural 
component
Length=73

 Score = 58.7 bits (203),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 30/71 (43%), Positives = 53/71 (75%), Gaps = 1/71 (1%)

Query  1   MDLSAIVNQLSQLSTRSAQEVQAKMSAGDL-NDPDKMIKAQFAMQQYSNFVGYESAMIKA  59
           M+LS I +Q+++++   ++ V   ++++DL NDPDKMI  QFA+QQYS ++  ES+M+K+
Sbjct  1   MNLSEITDQMGKVGKTLSNSVPDLLNSSDLVNDPDKMIELQFAVQQYSAYINVESGMLKT  60

Query  60  IKDMIQGIISK  70
           IKD++  I ++
Sbjct  61  IKDLVSTISNR  71

15) Sbal_1959 in NC_009052


> JQ747523|23|G21|397781952|AFO66347.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|20695..20916|escF|SESS1296_03618|putative 
LEE-encoded type III secretion system structural 
component
Length=73

 Score = 58.7 bits (203),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 30/71 (43%), Positives = 53/71 (75%), Gaps = 1/71 (1%)

Query  1   MDLSAIVNQLSQLSTRSAQEVQAKMSAGDL-NDPDKMIKAQFAMQQYSNFVGYESAMIKA  59
           M+LS I +Q+++++   ++ V   ++++DL NDPDKMI  QFA+QQYS ++  ES+M+K+
Sbjct  1   MNLSEITDQMGKVGKTLSNSVPDLLNSSDLVNDPDKMIELQFAVQQYSAYINVESGMLKT  60

Query  60  IKDMIQGIISK  70
           IKD++  I ++
Sbjct  61  IKDLVSTISNR  71

16) Sbal195_2263 in NC_009997


> JQ747523|23|G21|397781952|AFO66347.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|20695..20916|escF|SESS1296_03618|putative 
LEE-encoded type III secretion system structural 
component
Length=73

 Score = 58.2 bits (201),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 29/71 (41%), Positives = 52/71 (74%), Gaps = 1/71 (1%)

Query  1   MDLSAIVNQLSQLSTRSAQEVQAKMSAGDL-TDPDKMIKAQFAMQQYSNFVGYESAMIKA  59
           M+LS I +Q+++++   ++ V   ++++DL  DPDKMI  QFA+QQYS ++  ES+M+K+
Sbjct  1   MNLSEITDQMGKVGKTLSNSVPDLLNSSDLVNDPDKMIELQFAVQQYSAYINVESGMLKT  60

Query  60  IKDMIQGIISK  70
           IKD++  I ++
Sbjct  61  IKDLVSTISNR  71

17) Sbal678_2273 in NC_016901


> JQ747523|23|G21|397781952|AFO66347.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|20695..20916|escF|SESS1296_03618|putative 
LEE-encoded type III secretion system structural 
component
Length=73

 Score = 58.2 bits (201),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 29/71 (41%), Positives = 52/71 (74%), Gaps = 1/71 (1%)

Query  1   MDLSAIVNQLSQLSTRSAQEVQAKMSAGDL-TDPDKMIKAQFAMQQYSNFVGYESAMIKA  59
           M+LS I +Q+++++   ++ V   ++++DL  DPDKMI  QFA+QQYS ++  ES+M+K+
Sbjct  1   MNLSEITDQMGKVGKTLSNSVPDLLNSSDLVNDPDKMIELQFAVQQYSAYINVESGMLKT  60

Query  60  IKDMIQGIISK  70
           IKD++  I ++
Sbjct  61  IKDLVSTISNR  71