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Homologs of VPI2_0023c gene of EU272902

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) PCNPT3_07915
( YP_007640359.1 )

sialic acid utilization regulator, RpiR family protein

NC_020802
(Psychromonas sp. CNPT3)

1e-88

2) hexR
( YP_004953434.1 )

hexR

NC_016514
(Enterobacter cloacae EcWSU1)

8e-53

3) CSSP291_02665
( YP_007439420.1 )

hypothetical protein

NC_020260
(Cronobacter sakazakii Sp291)

3e-52

4) ESA_00527
( YP_001436654.1 )

hypothetical protein

NC_009778
(Cronobacter sakazakii ATCC BAA-894)

3e-51

5) CTU_33360
( YP_003211699.1 )

hypothetical protein

NC_013282
(Cronobacter turicensis z3032)

4e-51

6) ES15_0784
( YP_006341868.1 )

hypothetical protein

NC_017933
(Cronobacter sakazakii ES15)

8e-51

7) ENC_30210
( YP_007846521.1 )

Transcriptional regulators

NC_021046
(Enterobacter cloacae NCTC 9394)

3e-50

8) ECED1_5003
( YP_002400757.1 )

putative Transcriptional regulator

NC_011745
(Escherichia coli ED1a)

2e-49

9) ECENHK_17790
( YP_006580013.1 )

transcriptional regulator

NC_018405
(Enterobacter cloacae ENHKU01)

9e-49

10) D782_2386
( YP_007340540.1 )

transcriptional regulator

NC_020063
(Enterobacteriaceae bacterium FGI 57)

2e-48

11) O3M_22120
( YP_006772038.1 )

transcriptional regulator

NC_018650
(Escherichia coli 2009EL-2050)

2e-48

12) O3O_03170
( YP_006786226.1 )

transcriptional regulator

NC_018661
(Escherichia coli 2009EL-2071)

2e-48

13) O3K_22225
( YP_006781102.1 )

transcriptional regulator

NC_018658
(Escherichia coli 2011C-3493)

2e-48

14) EC55989_4916
( YP_002405773.1 )

Transcriptional regulator

NC_011748
(Escherichia coli 55989)

2e-48

15) ECSF_4174
( YP_003352164.1 )

transcriptional regulator

NC_013654
(Escherichia coli SE15)

2e-48

16) Ent638_3232
( YP_001177947.1 )

transcriptional regulator

NC_009436
(Enterobacter sp. 638)

2e-48

17) ECL_04111
( YP_003614594.1 )

putative transcriptional regulator

NC_014121
(Enterobacter cloacae ATCC 13047)

3e-48

18) Entcl_0937
( YP_003940493.1 )

RpiR family transcriptional regulator

NC_014618
(Enterobacter cloacae SCF1)

4e-48

19) Q7S_03055
( YP_005400441.1 )

RpiR family transcriptional regulator

NC_017047
(Rahnella aquatilis HX2)

4e-46

20) Rahaq_0665
( YP_004211419.1 )

RpiR family transcriptional regulator

NC_015061
(Rahnella sp. Y9602)

4e-46

21) A3UG_18085
( YP_006479039.1 )

putative transcriptional regulator

NC_018079
(Enterobacter cloacae SDM)

5e-44

22) RORB6_23680
( YP_007876968.1 )

putative Transcriptional regulator

NC_021066
(Raoultella ornithinolytica B6)

1e-43

23) EBL_c08530
( YP_006318484.1 )

putative transcriptional regulator

NC_017910
(Escherichia blattae DSM 4481)

2e-42

24) D781_1577
( YP_007344063.1 )

transcriptional regulator

NC_020064
(Serratia marcescens FGI94)

1e-41

• Sequence Alignments

1) O3Y_08595 in NC_016944


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  422 bits (1588),  Expect = 9e-120, Method: Compositional matrix adjust.
 Identities = 278/278 (100%), Positives = 278/278 (100%), Gaps = 0/278 (0%)

Query  1    MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR  60
            MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR
Sbjct  1    MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR  60

Query  61   DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI  120
            DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI
Sbjct  61   DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI  120

Query  121  CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA  180
            CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA
Sbjct  121  CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA  180

Query  181  ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK  240
            ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK
Sbjct  181  ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK  240

Query  241  VGAlllvdvlintlldvYPEYSASVFGTAEVILPLMDS  278
            VGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLMDS
Sbjct  241  VGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLMDS  278

2) VCM66_1713 in NC_012578


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  422 bits (1588),  Expect = 9e-120, Method: Compositional matrix adjust.
 Identities = 278/278 (100%), Positives = 278/278 (100%), Gaps = 0/278 (0%)

Query  1    MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR  60
            MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR
Sbjct  1    MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR  60

Query  61   DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI  120
            DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI
Sbjct  61   DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI  120

Query  121  CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA  180
            CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA
Sbjct  121  CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA  180

Query  181  ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK  240
            ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK
Sbjct  181  ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK  240

Query  241  VGAlllvdvlintlldvYPEYSASVFGTAEVILPLMDS  278
            VGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLMDS
Sbjct  241  VGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLMDS  278

3) VC1775 in NC_002505


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  422 bits (1588),  Expect = 9e-120, Method: Compositional matrix adjust.
 Identities = 278/278 (100%), Positives = 278/278 (100%), Gaps = 0/278 (0%)

Query  1    MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR  60
            MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR
Sbjct  1    MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR  60

Query  61   DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI  120
            DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI
Sbjct  61   DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI  120

Query  121  CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA  180
            CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA
Sbjct  121  CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA  180

Query  181  ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK  240
            ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK
Sbjct  181  ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK  240

Query  241  VGAlllvdvlintlldvYPEYSASVFGTAEVILPLMDS  278
            VGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLMDS
Sbjct  241  VGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLMDS  278

4) VC395_1889 in NC_012582


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  422 bits (1588),  Expect = 9e-120, Method: Compositional matrix adjust.
 Identities = 278/278 (100%), Positives = 278/278 (100%), Gaps = 0/278 (0%)

Query  1    MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR  60
            MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR
Sbjct  1    MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR  60

Query  61   DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI  120
            DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI
Sbjct  61   DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI  120

Query  121  CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA  180
            CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA
Sbjct  121  CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA  180

Query  181  ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK  240
            ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK
Sbjct  181  ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK  240

Query  241  VGAlllvdvlintlldvYPEYSASVFGTAEVILPLMDS  278
            VGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLMDS
Sbjct  241  VGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLMDS  278

5) VC0395_A1373 in NC_009457


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  422 bits (1588),  Expect = 9e-120, Method: Compositional matrix adjust.
 Identities = 278/278 (100%), Positives = 278/278 (100%), Gaps = 0/278 (0%)

Query  1    MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR  60
            MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR
Sbjct  1    MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR  60

Query  61   DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI  120
            DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI
Sbjct  61   DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI  120

Query  121  CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA  180
            CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA
Sbjct  121  CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA  180

Query  181  ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK  240
            ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK
Sbjct  181  ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK  240

Query  241  VGAlllvdvlintlldvYPEYSASVFGTAEVILPLMDS  278
            VGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLMDS
Sbjct  241  VGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLMDS  278

6) VCLMA_A1537 in NC_017270


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  421 bits (1584),  Expect = 2e-119, Method: Compositional matrix adjust.
 Identities = 276/278 (99%), Positives = 277/278 (99%), Gaps = 0/278 (0%)

Query  1    MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR  60
            MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR
Sbjct  1    MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR  60

Query  61   DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI  120
            DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI
Sbjct  61   DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI  120

Query  121  CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA  180
            CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA
Sbjct  121  CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA  180

Query  181  ISSSGSTKEVVHAVTQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK  240
            ISSSGSTKEVVHA TQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK
Sbjct  181  ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK  240

Query  241  VGAlllvdvlintlldvYPEYSASVFGTAEVVLPLMDS  278
            VGALLLVDVLINTLLDVYPEYSASVFGTAEV+LPLMDS
Sbjct  241  VGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLMDS  278

7) VCD_002595 in NC_012668


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  418 bits (1575),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 275/276 (99%), Positives = 276/276 (100%), Gaps = 0/276 (0%)

Query  1    MPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDL  60
            +PKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDL
Sbjct  3    LPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDL  62

Query  61   GYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICE  120
            GYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICE
Sbjct  63   GYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICE  122

Query  121  LVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFAIS  180
            LVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFAIS
Sbjct  123  LVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFAIS  182

Query  181  SSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSKVG  240
            SSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSKVG
Sbjct  183  SSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSKVG  242

Query  241  AlllvdvlintlldvYPEYSASVFGTAEVILPLMDS  276
            ALLLVDVLINTLLDVYPEYSASVFGTAEVILPLMDS
Sbjct  243  ALLLVDVLINTLLDVYPEYSASVFGTAEVILPLMDS  278

8) Vch1786_I1269 in NC_016445


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  410 bits (1543),  Expect = 3e-116, Method: Compositional matrix adjust.
 Identities = 271/271 (100%), Positives = 271/271 (100%), Gaps = 0/271 (0%)

Query  1    MVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDLGYKGY  60
            MVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDLGYKGY
Sbjct  8    MVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDLGYKGY  67

Query  61   SDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICELVHGA  120
            SDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICELVHGA
Sbjct  68   SDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICELVHGA  127

Query  121  KFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFAISSSGST  180
            KFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFAISSSGST
Sbjct  128  KFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFAISSSGST  187

Query  181  KEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSKVGAlllv  240
            KEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSKVGALLLV
Sbjct  188  KEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSKVGALLLV  247

Query  241  dvlintlldvYPEYSASVFGTAEVILPLMDS  271
            DVLINTLLDVYPEYSASVFGTAEVILPLMDS
Sbjct  248  DVLINTLLDVYPEYSASVFGTAEVILPLMDS  278

9) VV2_0729 in NC_004460


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  344 bits (1291),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 217/278 (79%), Positives = 250/278 (90%), Gaps = 0/278 (0%)

Query  1    MGSPKNLLVRLRSNMEPFSKKLRVVADYILENAHDVQFQTITDLARNTQTSEATVVRLCR  60
            M  PKNL+VRLRSN EP+SKKLRVVADY+LENAH+VQ+QTITDLA NT+TSEATVVRLCR
Sbjct  1    MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR  60

Query  61   DMGYKGYSDFRMALAVDLSQTESRQQNHIEGDICDVSAQSAVDSLQDTAKLIDRKSLARI  120
            D+GYKGYSDFRMALAVDLSQ+ ++ Q  ++GDIC+VSAQSAVDSL DTAKLIDR +L RI
Sbjct  61   DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI  120

Query  121  VERVHQAEFIGCIGVGASSIVGRYLAYRLIRIGKKAIMFEDTHLAAMSASRSSQGDLWFA  180
             E VH A FIGC+GVGASSIVGRYLAYRL+RIGKKAIM+EDTHLAAMSA++S  GD WFA
Sbjct  121  CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA  180

Query  181  VSSSGSTKEVIHAAGLAYKRDIPVVSLTNINHSPLSSLSTEMLVAARPEGPLTGGAFASK  240
            +SSSGSTKEV+HAA  A +R++PVVSLTNI+HSPLSS+S EMLVAARPEGPLTGGAF+SK
Sbjct  181  ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK  240

Query  241  VGAlllvdvlvnsllESYPEYKDSVQETAEVVIPLMAN  278
            VGALLLVDVL+N+LL+ YPEY  SV  TAEV++PLM +
Sbjct  241  VGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLMDS  278

10) VVMO6_04102 in NC_014966


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  344 bits (1291),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 217/278 (79%), Positives = 250/278 (90%), Gaps = 0/278 (0%)

Query  1    MGSPKNLLVRLRSNMEPFSKKLRVVADYILENAHDVQFQTITDLARNTQTSEATVVRLCR  60
            M  PKNL+VRLRSN EP+SKKLRVVADY+LENAH+VQ+QTITDLA NT+TSEATVVRLCR
Sbjct  1    MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR  60

Query  61   DMGYKGYSDFRMALAVDLSQTESRQQNHIEGDICDVSAQSAVDSLQDTAKLIDRKSLARI  120
            D+GYKGYSDFRMALAVDLSQ+ ++ Q  ++GDIC+VSAQSAVDSL DTAKLIDR +L RI
Sbjct  61   DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI  120

Query  121  VERVHQAEFIGCIGVGASSIVGRYLAYRLIRIGKKAIMFEDTHLAAMSASRSSQGDLWFA  180
             E VH A FIGC+GVGASSIVGRYLAYRL+RIGKKAIM+EDTHLAAMSA++S  GD WFA
Sbjct  121  CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA  180

Query  181  VSSSGSTKEVIHAAGLAYKRDIPVVSLTNINHSPLSSLSTEMLVAARPEGPLTGGAFASK  240
            +SSSGSTKEV+HAA  A +R++PVVSLTNI+HSPLSS+S EMLVAARPEGPLTGGAF+SK
Sbjct  181  ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK  240

Query  241  VGAlllvdvlvnsllESYPEYKDSVQETAEVVIPLMAN  278
            VGALLLVDVL+N+LL+ YPEY  SV  TAEV++PLM +
Sbjct  241  VGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLMDS  278

11) VVA1198 in NC_005140


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  344 bits (1291),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 217/278 (79%), Positives = 250/278 (90%), Gaps = 0/278 (0%)

Query  1    MGSPKNLLVRLRSNMEPFSKKLRVVADYILENAHDVQFQTITDLARNTQTSEATVVRLCR  60
            M  PKNL+VRLRSN EP+SKKLRVVADY+LENAH+VQ+QTITDLA NT+TSEATVVRLCR
Sbjct  1    MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR  60

Query  61   DMGYKGYSDFRMALAVDLSQTESRQQNHIEGDICDVSAQSAVDSLQDTAKLIDRKSLARI  120
            D+GYKGYSDFRMALAVDLSQ+ ++ Q  ++GDIC+VSAQSAVDSL DTAKLIDR +L RI
Sbjct  61   DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI  120

Query  121  VERVHQAEFIGCIGVGASSIVGRYLAYRLIRIGKKAIMFEDTHLAAMSASRSSQGDLWFA  180
             E VH A FIGC+GVGASSIVGRYLAYRL+RIGKKAIM+EDTHLAAMSA++S  GD WFA
Sbjct  121  CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA  180

Query  181  VSSSGSTKEVIHAAGLAYKRDIPVVSLTNINHSPLSSLSTEMLVAARPEGPLTGGAFASK  240
            +SSSGSTKEV+HAA  A +R++PVVSLTNI+HSPLSS+S EMLVAARPEGPLTGGAF+SK
Sbjct  181  ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK  240

Query  241  VGAlllvdvlvnsllESYPEYKDSVQETAEVVIPLMAN  278
            VGALLLVDVL+N+LL+ YPEY  SV  TAEV++PLM +
Sbjct  241  VGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLMDS  278

12) PCNPT3_07915 in NC_020802


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  318 bits (1194),  Expect = 1e-88, Method: Compositional matrix adjust.
 Identities = 206/277 (75%), Positives = 245/277 (89%), Gaps = 0/277 (0%)

Query  1    MSTPKNLLVRLRSNIEPLSKKLKIVADHILENAHDVQFQTITNLARNTQTSEATIVRFCR  60
            M+ PKNL+VRLRSN EPLSKKL++VAD +LENAH+VQ+QTIT+LA NT+TSEAT+VR+CR
Sbjct  1    MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR  60

Query  61   DMGYKGYSDFRMALAIDLSQNFNLNKPVFEGDISDVSAQCAVTSLQDTAKLLDRGSLQRI  120
            D+GYKGYSDFRMALA+DLSQ+ N ++P  +GDI +VSAQ AV SL DTAKL+DR++L+RI
Sbjct  61   DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI  120

Query  121  CKLVHDAQFISCVGVGASSIVGRYLAFRLLRIGKKVIMYEDTHLAAMNAVCCRPGDLWFT  180
            C LVH+A+FI+CVGVGASSIVGRYLA+RL+RIGKK IMYEDTHLAAM+A     GD WF+
Sbjct  121  CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA  180

Query  181  ISSSGSTKEVIHAATQAFLRQVPVVTFTNINPSPLSAVSSEILVAARPEGPLTGGAFASK  240
            ISSSGSTKEV+HAATQA  R VPVV++TNI+ SPLS++S E+LVAARPEGPLTGGAF+SK
Sbjct  181  ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK  240

Query  241  VGAlllvdvlvntlldKYPEYSQVVQETAESVLPLMK  277
            VGALLLVDVL+NTLLD YPEYS  V  TAE +LPLM 
Sbjct  241  VGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLMD  277

13) hexR in NC_016514


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  199 bits (741),  Expect = 8e-53, Method: Compositional matrix adjust.
 Identities = 118/271 (44%), Positives = 195/271 (72%), Gaps = 3/271 (1%)

Query  6    NLLLKLRQEASGYSPTQRKLGGFVLNDPARVLYLTITELARESHTSEASVTRLCRTLGCK  65
            NL+++LR ++   S   R ++++VL+++  V Y TIT+LA ++ TSEA+V RLCR LG K
Sbjct  6    NLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDLGYK  65

Query  66   GYTEFKMALALDIQQGQPERQA---GDEIDSVVEESVQALQDTARLLDRALLEKAAQALH  122
            GY++F+MALA+D+ Q+  + Q+   GD  +   + +V++L DTA+L+DRA L++  + +H
Sbjct  66   GYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICELVH  125

Query  123  QAQSVQIYGVAASAILGEYLHYKLLRLGKPVQLFSDMHRAAMNATTLSKASLVVAISSSG  182
             A+ +   GV+AS+I+G YL Y+L+R+GK   ++ D H AAM+A     +    AISSSG
Sbjct  126  GAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFAISSSG  185

Query  183  STRDLLHVVKLARKRGVPVLALSNTPRSPLASLSDMLLVAAKPEGPLSAGALNAKVGVML  242
            ST++++H    A++RGVPV++L+N ++SPL+S+SD +LVAA+PEGPL++GA+++KVG +L
Sbjct  186  STKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSKVGALL  245

Query  243  LVELLTHSLIAIDGHYGEVSQQTASATLPLL  273
            LV++L ++L+ +  +Y+     TA   LPL+
Sbjct  246  LVDVLINTLLDVYPEYSASVFGTAEVILPLM  276

14) CSSP291_02665 in NC_020260


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  198 bits (734),  Expect = 3e-52, Method: Compositional matrix adjust.
 Identities = 121/271 (45%), Positives = 193/271 (72%), Gaps = 2/271 (0%)

Query  6    NLLLKLRQALSGFSPTQRKLGDYVLSDPARVLYLTITELARESDTSEASVTRLCRALGCK  65
            NL+++LR     +S   R ++DYVL ++  V Y TIT+LA ++ TSEA+V RLCR LG K
Sbjct  6    NLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDLGYK  65

Query  66   GYTEFKMALALDVQRG--QAPRAQNGDALDALVEESVQALRDTAQLLDRAVLEQAAQALH  123
            GY++F+MALA+D+ ++  Q+    +GD  +   + +V++L DTA+L+DRA L++  + +H
Sbjct  66   GYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICELVH  125

Query  124  QARSVQIYGVAASAIIGEYLHYKLLRLGKAAHLFSDMHRASMNATTLGETDLVVAISSSG  183
             A+ +   GV+AS+I+G YL Y+L+R+GK A ++ D H A+M+A      D   AISSSG
Sbjct  126  GAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFAISSSG  185

Query  184  STRDLLHAVTLARKAGAPVLTLSNTPRSPLASLSNMLLVAAKPEGPLNAGALNAKVGAML  243
            ST++++HA T A++ G PV++L+N ++SPL+S+S+ +LVAA+PEGPL +GA+++KVGA+L
Sbjct  186  STKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSKVGALL  245

Query  244  LVELLTAGLIATDSHYSETSQQTASATLPLL  274
            LV++L   L+   ++YS +   TA   LPL+
Sbjct  246  LVDVLINTLLDVYPEYSASVFGTAEVILPLM  276

15) ESA_00527 in NC_009778


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  194 bits (720),  Expect = 3e-51, Method: Compositional matrix adjust.
 Identities = 120/271 (45%), Positives = 190/271 (71%), Gaps = 2/271 (0%)

Query  6    NLLLKLRQALSGFSPTQRKLGDYVLSDPARVLYLTITELARESDTSEASVTRLCRALGCK  65
            NL+++LR     +S   R ++DYVL ++  V Y TIT+LA ++ TSEA+V RLCR LG K
Sbjct  6    NLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDLGYK  65

Query  66   GYTEFKMALALDVQRG--QAPRAQSGDALDALVEESVQALRDTAQLLDRAVLEQAAQALH  123
            GY++F+MALA+D+ ++  Q+     GD  +   + +V++L DTA+L+DRA L++  + +H
Sbjct  66   GYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICELVH  125

Query  124  QARSVQIYGVAASAIIGEYLHYKLLRLGKAAHLFSDMHRASMNATTLGETDLVVAISSSG  183
             A+ +   GV+AS+I+G YL Y+L+R+GK A ++ D H A+M+A      D   AISSSG
Sbjct  126  GAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFAISSSG  185

Query  184  STRDLLHAVTLARKAGAPVLTLSNTPRSPLASLSNMLLVAAKPEGPLNAGALNAKVGAML  243
            ST++++HA T A++ G PV++L+N ++SPL+S+S+ +LVAA+PEGPL +GA+++KVGA+L
Sbjct  186  STKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSKVGALL  245

Query  244  LVELLTAGLIATDSHYREISQQTASATLPLL  274
            LV++L   L+   ++Y      TA   LPL+
Sbjct  246  LVDVLINTLLDVYPEYSASVFGTAEVILPLM  276

16) CTU_33360 in NC_013282


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  194 bits (720),  Expect = 4e-51, Method: Compositional matrix adjust.
 Identities = 121/271 (45%), Positives = 191/271 (71%), Gaps = 2/271 (0%)

Query  12   NLLLKLRQELSGFSPTQRKLGEYVLGDPARVLYLTITELARESDTSEASVTRLCRTLGCK  71
            NL+++LR +   +S   R +++YVL ++  V Y TIT+LA ++ TSEA+V RLCR LG K
Sbjct  6    NLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDLGYK  65

Query  72   GYTEFKMALALDVQRG--QAPRAQNGDALDALVEESVQALRDTAQLLDRAMLERAAQALH  129
            GY++F+MALA+D+ ++  Q+    +GD  +   + +V++L DTA+L+DRA L+R  + +H
Sbjct  66   GYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICELVH  125

Query  130  QAGSVQIYGVAASAIIGEYLHYKLLRLGKPAHLFSDMHRASMNATTLGERDLVVAISSSG  189
             A  +   GV+AS+I+G YL Y+L+R+GK A ++ D H A+M+A      D   AISSSG
Sbjct  126  GAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFAISSSG  185

Query  190  STRDLLHAVKLARKAGAPVLTLSNTPRSPLASISDMLLVAAKPEGPLNAGALNAKVGAML  249
            ST++++HA   A++ G PV++L+N ++SPL+SISD +LVAA+PEGPL +GA+++KVGA+L
Sbjct  186  STKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSKVGALL  245

Query  250  LVELLTASLIASDSRYTEISQQTASATLPLL  280
            LV++L  +L+   + Y+     TA   LPL+
Sbjct  246  LVDVLINTLLDVYPEYSASVFGTAEVILPLM  276

17) ES15_0784 in NC_017933


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  193 bits (716),  Expect = 8e-51, Method: Compositional matrix adjust.
 Identities = 119/271 (44%), Positives = 190/271 (71%), Gaps = 2/271 (0%)

Query  6    NLLLKLRQALSGFSPTQRKLGDYLLSDPARVLYLTITELARESDTSEASVTRLCRALGCK  65
            NL+++LR     +S   R ++DY+L ++  V Y TIT+LA ++ TSEA+V RLCR LG K
Sbjct  6    NLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDLGYK  65

Query  66   GYTEFKMALALDVQRG--QAPRAQSGDALDALVEESVQALRDTAQLLDRAVLEQAAQALH  123
            GY++F+MALA+D+ ++  Q+     GD  +   + +V++L DTA+L+DRA L++  + +H
Sbjct  66   GYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICELVH  125

Query  124  QARSVQIYGVAASTIIGEYLHYKLLRLGKAAHLFSDMHRASMNATTLGETDLVVAISSSG  183
             A+ +   GV+AS+I+G YL Y+L+R+GK A ++ D H A+M+A      D   AISSSG
Sbjct  126  GAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFAISSSG  185

Query  184  STRDLLHAVTLARKAGAPVLTLSNTPRSPLASLSNMLLVAAKPEGPLNAGALNAKVGAML  243
            ST++++HA T A++ G PV++L+N ++SPL+S+S+ +LVAA+PEGPL +GA+++KVGA+L
Sbjct  186  STKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSKVGALL  245

Query  244  LVELLTASLIASDSRYREISQQTASATLPLL  274
            LV++L  +L+   + Y      TA   LPL+
Sbjct  246  LVDVLINTLLDVYPEYSASVFGTAEVILPLM  276

18) ENC_30210 in NC_021046


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  191 bits (708),  Expect = 3e-50, Method: Compositional matrix adjust.
 Identities = 119/271 (44%), Positives = 192/271 (71%), Gaps = 3/271 (1%)

Query  6    NLLLKLRQEASGYSPTQQKLGEFVLNDPARVLYLTITELARESGTSEASVTRLCRTLGCK  65
            NL+++LR ++   S   + ++++VL+++  V Y TIT+LA ++ TSEA+V RLCR LG K
Sbjct  6    NLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDLGYK  65

Query  66   GYNEFKMALALDIQQGLPERQA---GDAIDNVVDESVQALQDTAKLLDRAQLEQATLALH  122
            GY++F+MALA+D+ Q+  + Q+   GD  +   + +V++L DTAKL+DRA L++    +H
Sbjct  66   GYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICELVH  125

Query  123  QAQSVQIYGVAASAILGEYLHYKLLRLGKPAQLFSDMHRAAMNATTLSKETLVVAISSSG  182
             A+ +   GV+AS+I+G YL Y+L+R+GK A ++ D H AAM+A          AISSSG
Sbjct  126  GAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFAISSSG  185

Query  183  STRDLLHVVKLARKRGVKVLALSNTPRSPLASLSDLQLVAAKPEGPLSAGALNAKVGVML  242
            ST++++H    A++RGV V++L+N ++SPL+S+SD  LVAA+PEGPL++GA+++KVG +L
Sbjct  186  STKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSKVGALL  245

Query  243  LVELLTTSLIAVDSHYGDVSQQTASATLPLL  273
            LV++L  +L+ V ++Y+     TA   LPL+
Sbjct  246  LVDVLINTLLDVYPEYSASVFGTAEVILPLM  276

19) ECED1_5003 in NC_011745


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  188 bits (699),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 120/278 (44%), Positives = 194/278 (70%), Gaps = 7/278 (2%)

Query  1    MSENENLLLRLRQSVDGYSRTQQKLGEFVLSDPAKVVYLTITELARESGTSEASVTRLCR  60
            M+   NL++RLR + +  S+  + ++++VL ++  V Y TIT+LA ++ TSEA+V RLCR
Sbjct  1    MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR  60

Query  61   TLGCKGYNEFKMALALDLRQVQSVEH---GGDEIDNVVNESVQALQDTAKLLDRTLLEAA  117
             LG KGY++F+MALA+DL Q  +  +   +GD  +   + +V++L DTAKL+DR+ L+  
Sbjct  61   DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI  120

Query  118  TLALHQAQSVQIYGVAASAILGEYLHYKLLRLGKPAQLFSDMHRAAMNA--TTLSKNTFV  175
               +H A+ +   GV+AS+I+G YL Y+L+R+GK A ++ D H AAM+A  + ++   F 
Sbjct  121  CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWF-  179

Query  176  VAISSSGSTRDLLHVVKLARKQGVRVLALSNTPRSPLASLSDIQLVAAKPEGPLSAGALN  235
             AISSSGST++++H    A+++GV V++L+N ++SPL+S+SD  LVAA+PEGPL++GA++
Sbjct  180  -AISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFS  238

Query  236  AKVGVMLLVELLTTSLIALDHKYSDVSQQTASATLPLL  273
            +KVG +LLV++L  +L+ +   YS     TA   LPL+
Sbjct  239  SKVGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLM  276

20) ECENHK_17790 in NC_018405


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  186 bits (690),  Expect = 9e-49, Method: Compositional matrix adjust.
 Identities = 115/271 (43%), Positives = 188/271 (70%), Gaps = 3/271 (1%)

Query  6    NLLLKLRQEASGYSPTQQKLGEFVLSDPARVLYLTITELARESHTSEASVTRLCRTLGCK  65
            NL+++LR ++   S   + ++++VL ++  V Y TIT+LA ++ TSEA+V RLCR LG K
Sbjct  6    NLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDLGYK  65

Query  66   GYNEFKMALALDIQQGQPAREA---GDEIDNVVDESILALQDTARLLDRALLEKAALALH  122
            GY++F+MALA+D+ Q+    ++   GD  +   + ++ +L DTA+L+DRA L++    +H
Sbjct  66   GYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICELVH  125

Query  123  QAHSVQIYGVAASAILGEYLHYKLLRLGKPAQLFSDMHRAAMNAATLSAETLVVAISSSG  182
             A  +   GV+AS+I+G YL Y+L+R+GK A ++ D H AAM+A+         AISSSG
Sbjct  126  GAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFAISSSG  185

Query  183  STRDLLHVVKLARKRGVKVLALSNTPRSPLASLSDMQLVAAKPEGPLSAGALNAKVGVML  242
            ST++++H    A++RGV V++L+N ++SPL+S+SD  LVAA+PEGPL++GA+++KVG +L
Sbjct  186  STKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSKVGALL  245

Query  243  LVELLTTSLIALDNHYADVSQQTASATLPLL  273
            LV++L  +L+ +  +Y+     TA   LPL+
Sbjct  246  LVDVLINTLLDVYPEYSASVFGTAEVILPLM  276

21) D782_2386 in NC_020063


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  185 bits (685),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 123/276 (45%), Positives = 187/276 (68%), Gaps = 1/276 (0%)

Query  1    MSETDNLLLRLRQAQSGFSPTQARLGNFVHAHPDKVLYMTITELARESGTSEASVTRLCR  60
            M+   NL++RLR     +S     ++++V  +++ V Y TIT+LA ++ TSEA+V RLCR
Sbjct  1    MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR  60

Query  61   ALGCKGYNEFKMALALDIRRDSAASSMAGKDDIDALVNQS-VRALQDTAKLLDREQLDAG  119
             LG KGY++F+MALA+D+ + +  S     +DI  +  QS V +L DTAKL+DR  L+  
Sbjct  61   DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI  120

Query  120  ARALHEARSIVIYGVAASAIVGDYLHYKLLRLGKSVQLFSDMHRAAMSTVGLSSDDLVVA  179
               +H A+ I   GV+AS+IVG YL Y+L+R+GK   ++ D H AAMS+     +D   A
Sbjct  121  CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA  180

Query  180  ISSSGSTRELLHVTKLAHQKGARVMSLSNTPRSPLASMSDILLVAAQPEDPLSAGALNAK  239
            ISSSGST+E++H +  AHQ+G  V+SL+N ++SPL+S+SD +LVAA+PE+PL++GA+++K
Sbjct  181  ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK  240

Query  240  VGVMLLVELLITDLITRDARYKSISQQTASATLPLL  275
            VG +LLV++LI  L+   + Y +    TA   LPL+
Sbjct  241  VGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLM  276

22) EC55989_4916 in NC_011748


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  185 bits (686),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 119/273 (44%), Positives = 191/273 (70%), Gaps = 7/273 (2%)

Query  6    NLLLRLRQSVDGYSRTQQKLGEFVLSDPAKVVYLTITELARESGTSEASVTRLCRTLGCK  65
            NL++RLR + +  S+  + ++++VL ++  V Y TIT+LA ++ TSEA+V RLCR LG K
Sbjct  6    NLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDLGYK  65

Query  66   GYNEFKMALALDLRQVQS---VEYGGDEIDNVVNESVQALQDTAKLLDRTLLEAATLALH  122
            GY++F+MALA+DL Q  +      +GD  +   + +V++L DTAKL+DR+ L+     +H
Sbjct  66   GYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICELVH  125

Query  123  QAQSVQIYGVAASAILGEYLHYKLLRLGKPAQLFSDMHRAAMNA--TTLSKNTFVVAISS  180
             A+ +   GV+AS+I+G YL Y+L+R+GK A ++ D H AAM+A  + ++   F  AISS
Sbjct  126  GAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWF--AISS  183

Query  181  SGSTRDLLHVVKLARKQGVRVLALSNTPRSPLASLSDIQLVAAKPEGPLSAGALNAKVGV  240
            SGST++++H    A+++GV V++L+N ++SPL+S+SD  LVAA+PEGPL++GA+++KVG 
Sbjct  184  SGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSKVGA  243

Query  241  MLLVELLTTSLIALDHKYSDVSQQTASATLPLL  273
            +LLV++L  +L+ +   YS     TA   LPL+
Sbjct  244  LLLVDVLINTLLDVYPEYSASVFGTAEVILPLM  276

23) O3M_22120 in NC_018650


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  185 bits (686),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 119/273 (44%), Positives = 191/273 (70%), Gaps = 7/273 (2%)

Query  6    NLLLRLRQSVDGYSRTQQKLGEFVLSDPAKVVYLTITELARESGTSEASVTRLCRTLGCK  65
            NL++RLR + +  S+  + ++++VL ++  V Y TIT+LA ++ TSEA+V RLCR LG K
Sbjct  6    NLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDLGYK  65

Query  66   GYNEFKMALALDLRQVQS---VEYGGDEIDNVVNESVQALQDTAKLLDRTLLEAATLALH  122
            GY++F+MALA+DL Q  +      +GD  +   + +V++L DTAKL+DR+ L+     +H
Sbjct  66   GYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICELVH  125

Query  123  QAQSVQIYGVAASAILGEYLHYKLLRLGKPAQLFSDMHRAAMNA--TTLSKNTFVVAISS  180
             A+ +   GV+AS+I+G YL Y+L+R+GK A ++ D H AAM+A  + ++   F  AISS
Sbjct  126  GAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWF--AISS  183

Query  181  SGSTRDLLHVVKLARKQGVRVLALSNTPRSPLASLSDIQLVAAKPEGPLSAGALNAKVGV  240
            SGST++++H    A+++GV V++L+N ++SPL+S+SD  LVAA+PEGPL++GA+++KVG 
Sbjct  184  SGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSKVGA  243

Query  241  MLLVELLTTSLIALDHKYSDVSQQTASATLPLL  273
            +LLV++L  +L+ +   YS     TA   LPL+
Sbjct  244  LLLVDVLINTLLDVYPEYSASVFGTAEVILPLM  276

24) O3O_03170 in NC_018661


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  185 bits (686),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 119/273 (44%), Positives = 191/273 (70%), Gaps = 7/273 (2%)

Query  6    NLLLRLRQSVDGYSRTQQKLGEFVLSDPAKVVYLTITELARESGTSEASVTRLCRTLGCK  65
            NL++RLR + +  S+  + ++++VL ++  V Y TIT+LA ++ TSEA+V RLCR LG K
Sbjct  6    NLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDLGYK  65

Query  66   GYNEFKMALALDLRQVQS---VEYGGDEIDNVVNESVQALQDTAKLLDRTLLEAATLALH  122
            GY++F+MALA+DL Q  +      +GD  +   + +V++L DTAKL+DR+ L+     +H
Sbjct  66   GYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICELVH  125

Query  123  QAQSVQIYGVAASAILGEYLHYKLLRLGKPAQLFSDMHRAAMNA--TTLSKNTFVVAISS  180
             A+ +   GV+AS+I+G YL Y+L+R+GK A ++ D H AAM+A  + ++   F  AISS
Sbjct  126  GAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWF--AISS  183

Query  181  SGSTRDLLHVVKLARKQGVRVLALSNTPRSPLASLSDIQLVAAKPEGPLSAGALNAKVGV  240
            SGST++++H    A+++GV V++L+N ++SPL+S+SD  LVAA+PEGPL++GA+++KVG 
Sbjct  184  SGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSKVGA  243

Query  241  MLLVELLTTSLIALDHKYSDVSQQTASATLPLL  273
            +LLV++L  +L+ +   YS     TA   LPL+
Sbjct  244  LLLVDVLINTLLDVYPEYSASVFGTAEVILPLM  276

25) O3K_22225 in NC_018658


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  185 bits (686),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 119/273 (44%), Positives = 191/273 (70%), Gaps = 7/273 (2%)

Query  6    NLLLRLRQSVDGYSRTQQKLGEFVLSDPAKVVYLTITELARESGTSEASVTRLCRTLGCK  65
            NL++RLR + +  S+  + ++++VL ++  V Y TIT+LA ++ TSEA+V RLCR LG K
Sbjct  6    NLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDLGYK  65

Query  66   GYNEFKMALALDLRQVQS---VEYGGDEIDNVVNESVQALQDTAKLLDRTLLEAATLALH  122
            GY++F+MALA+DL Q  +      +GD  +   + +V++L DTAKL+DR+ L+     +H
Sbjct  66   GYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICELVH  125

Query  123  QAQSVQIYGVAASAILGEYLHYKLLRLGKPAQLFSDMHRAAMNA--TTLSKNTFVVAISS  180
             A+ +   GV+AS+I+G YL Y+L+R+GK A ++ D H AAM+A  + ++   F  AISS
Sbjct  126  GAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWF--AISS  183

Query  181  SGSTRDLLHVVKLARKQGVRVLALSNTPRSPLASLSDIQLVAAKPEGPLSAGALNAKVGV  240
            SGST++++H    A+++GV V++L+N ++SPL+S+SD  LVAA+PEGPL++GA+++KVG 
Sbjct  184  SGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSKVGA  243

Query  241  MLLVELLTTSLIALDHKYSDVSQQTASATLPLL  273
            +LLV++L  +L+ +   YS     TA   LPL+
Sbjct  244  LLLVDVLINTLLDVYPEYSASVFGTAEVILPLM  276

26) ECSF_4174 in NC_013654


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  185 bits (686),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 119/273 (44%), Positives = 191/273 (70%), Gaps = 7/273 (2%)

Query  6    NLLLRLRQSVDGYSRTQQKLGEFVLSDPAKVVYLTITELARESGTSEASVTRLCRTLGCK  65
            NL++RLR + +  S+  + ++++VL ++  V Y TIT+LA ++ TSEA+V RLCR LG K
Sbjct  6    NLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDLGYK  65

Query  66   GYNEFKMALALDLRQVQS---VEYGGDEIDNVVNESVQALQDTAKLLDRTLLEAATLALH  122
            GY++F+MALA+DL Q  +      +GD  +   + +V++L DTAKL+DR+ L+     +H
Sbjct  66   GYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICELVH  125

Query  123  QAQSVQIYGVAASAILGEYLHYKLLRLGKPAQLFSDMHRAAMNA--TTLSKNTFVVAISS  180
             A+ +   GV+AS+I+G YL Y+L+R+GK A ++ D H AAM+A  + ++   F  AISS
Sbjct  126  GAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWF--AISS  183

Query  181  SGSTRDLLHVVKLARKQGVRVLALSNTPRSPLASLSDIQLVAAKPEGPLSAGALNAKVGV  240
            SGST++++H    A+++GV V++L+N ++SPL+S+SD  LVAA+PEGPL++GA+++KVG 
Sbjct  184  SGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSKVGA  243

Query  241  MLLVELLTTSLIALDHKYSDVSQQTASATLPLL  273
            +LLV++L  +L+ +   YS     TA   LPL+
Sbjct  244  LLLVDVLINTLLDVYPEYSASVFGTAEVILPLM  276

27) Ent638_3232 in NC_009436


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  185 bits (685),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 114/276 (42%), Positives = 192/276 (70%), Gaps = 3/276 (1%)

Query  1    MSENENLLLRLRQGVSGYSPTQQKLGSFVLNDPSRVLYLTITELARESDTSEASVTRLCR  60
            M+   NL++RLR      S   + ++ +VL+++  V Y TIT+LA ++ TSEA+V RLCR
Sbjct  1    MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR  60

Query  61   TLGCKGYTEFKMALALDVQR--EHVPLKKGDEIDEIVEESIL-ALQDTSRLLDREILLKA  117
             LG KGY++F+MALA+D+ +  ++   K +++I E+  +S + +L DT++L+DR  L + 
Sbjct  61   DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI  120

Query  118  AQALHQSRSVYIYGVAASAIIGDYLHYKLLRLGKPAQLFSDMHRASMNATTLTSDDLVVA  177
             + +H ++ +   GV+AS+I+G YL Y+L+R+GK A ++ D H A+M+A     +D   A
Sbjct  121  CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA  180

Query  178  ISSSGSTRDLLHVVKLARKRGAHVLALSNTPRSPLTSLSDMLLVAAKPEGPLSAGALNAK  237
            ISSSGST++++H    A++RG  V++L+N ++SPL+S+SD +LVAA+PEGPL++GA+++K
Sbjct  181  ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK  240

Query  238  VGVMLLVELLATTMISLDDRYGDASQQTASATLPLL  273
            VG +LLV++L  T++ +   Y+ +   TA   LPL+
Sbjct  241  VGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLM  276

28) ECL_04111 in NC_014121


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  184 bits (683),  Expect = 3e-48, Method: Compositional matrix adjust.
 Identities = 118/271 (44%), Positives = 195/271 (72%), Gaps = 3/271 (1%)

Query  6    NLLLKLRQEASGYSPTQKKLGEFVLNDPARVLYLTITELARESHTSEASVTRLCRTLGCK  65
            NL+++LR ++   S   + ++++VL+++  V Y TIT+LA ++ TSEA+V RLCR LG K
Sbjct  6    NLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDLGYK  65

Query  66   GYNEFKMALALDIQQG---QPARVAGDEIDNVVDESVQALQDTARLLDRallekaaqalh  122
            GY++F+MALA+D+ Q+     +++ GD  +   + +V++L DTA+L+DRA L++  + +H
Sbjct  66   GYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICELVH  125

Query  123  qaqaVQIYGVAASAILGEYLHYKLLRLGKPAQLFSDMHRAAMNAATLSEGTLVVAISSSG  182
             A+ +   GV+AS+I+G YL Y+L+R+GK A ++ D H AAM+A+    G    AISSSG
Sbjct  126  GAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFAISSSG  185

Query  183  STRDLLHVVKLARKRGVKVLSLSNTPRSPLASLSDMQLVAAKPEGPLSAGALNAKVGVML  242
            ST++++H    A++RGV V+SL+N ++SPL+S+SD  LVAA+PEGPL++GA+++KVG +L
Sbjct  186  STKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSKVGALL  245

Query  243  LVELLTTSLIAIDSHYGEVSQQTASATLPLL  273
            LV++L  +L+ + ++Y+     TA   LPL+
Sbjct  246  LVDVLINTLLDVYPEYSASVFGTAEVILPLM  276

29) Entcl_0937 in NC_014618


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  184 bits (682),  Expect = 4e-48, Method: Compositional matrix adjust.
 Identities = 115/252 (46%), Positives = 181/252 (72%), Gaps = 3/252 (1%)

Query  25   LGEFVLSAPAKVLYLTITELARETETSEASVTRLCRTLGCKGYNEFKMALALDIQQ--NQ  82
            ++++VL  +  V Y TIT+LA +T TSEA+V RLCR LG KGY++F+MALA+D+ Q  NQ
Sbjct  25   VADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDLGYKGYSDFRMALAVDLSQSANQ  84

Query  83   APQPVGDEIDGVVSES-VQALQDTATLLDRALLETAAGALHQARSVQIYGVAASAILGEY  141
            +   ++++I  V ++S V++L DTA L+DRA L+     +H A+ +   GV+AS+I+G Y
Sbjct  85   SQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICELVHGAKFIGCVGVGASSIVGRY  144

Query  142  LHYKLLRLGKPAQLFSDMHRAAMNATTLTKDDLVVAISSSGSTRDLLHVVKLARKRGARV  201
            L Y+L+R+GK A ++ D H AAM+A     +D   AISSSGST++++H    A++RG  V
Sbjct  145  LAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFAISSSGSTKEVVHAATQAHQRGVPV  204

Query  202  LALSNTPRSPLATLSDMLLVAAKPEGPLSAGALTAKVGVMLLVELLTTSLIALDGHYSEV  261
            ++L+N ++SPL+++SD +LVAA+PEGPL++GA+++KVG +LLV++L  +L+ +  +YS  
Sbjct  205  VSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSKVGALLLVDVLINTLLDVYPEYSAS  264

Query  262  SQQTASATLPLL  273
               TA   LPL+
Sbjct  265  VFGTAEVILPLM  276

30) Q7S_03055 in NC_017047


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  177 bits (657),  Expect = 4e-46, Method: Compositional matrix adjust.
 Identities = 115/271 (43%), Positives = 190/271 (71%), Gaps = 1/271 (0%)

Query  9    TLLLRMRQGLENYSPTLHKLGSFVLEQPQRVLYLTITELARESDTSEASVTRLCRQLGCK  68
             L++R+R   E  S  L+ ++ +VLE+++ V Y TIT+LA ++ TSEA+V RLCR+LG K
Sbjct  6    NLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDLGYK  65

Query  69   GFTEFKMGLALETRQNPTLPSAGGNDDV-QTLIEDSITALRDTGKLLDRQVLADAAFRIH  127
            G+++F+M+LA++  Q++  + +  ++D+ +   + ++ +L DT+KL+DR  L      +H
Sbjct  66   GYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICELVH  125

Query  128  NARSVQVYGVAASAIVADYLGYKLLRLGKASQCFADMHRAAMNAvsldsqdivvvisssg  187
             A+ +   GV+AS+IV+ YL+Y+L+R+GK +  + D H AAM+A      D    ISSSG
Sbjct  126  GAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFAISSSG  185

Query  188  sTKDVLHAAALAKRQGTTVIGISNTLRSPLSSLADILLVAAKPEGPLTAGLLTSKVGGML  247
            STK+V+HAA+ A ++G  V++++N  +SPLSS++D +LVAA+PEGPLT+G ++SKVG++L
Sbjct  186  STKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSKVGALL  245

Query  248  LVELLINQLLTHSPDYLQASEHSASATLSLL  278
            LV++LIN LL   P+Y  +   +A   L+L+
Sbjct  246  LVDVLINTLLDVYPEYSASVFGTAEVILPLM  276

31) Rahaq_0665 in NC_015061


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  177 bits (657),  Expect = 4e-46, Method: Compositional matrix adjust.
 Identities = 115/271 (43%), Positives = 190/271 (71%), Gaps = 1/271 (0%)

Query  9    TLLLRMRQGLENYSPTLHKLGSFVLEQPQRVLYLTITELARESDTSEASVTRLCRQLGCK  68
             L++R+R   E  S  L+ ++ +VLE+++ V Y TIT+LA ++ TSEA+V RLCR+LG K
Sbjct  6    NLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDLGYK  65

Query  69   GFTEFKMGLALETRQNPTLPSAGGNDDV-QTLIEDSITALRDTGKLLDRQVLADAAFRIH  127
            G+++F+M+LA++  Q++  + +  ++D+ +   + ++ +L DT+KL+DR  L      +H
Sbjct  66   GYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICELVH  125

Query  128  NARSVQVYGVAASAIVADYLGYKLLRLGKASQCFADMHRAAMNAvsldsqdivvvisssg  187
             A+ +   GV+AS+IV+ YL+Y+L+R+GK +  + D H AAM+A      D    ISSSG
Sbjct  126  GAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFAISSSG  185

Query  188  sTKDVLHAAALAKRQGTTVIGISNTLRSPLSSLADILLVAAKPEGPLTAGLLTSKVGGML  247
            STK+V+HAA+ A ++G  V++++N  +SPLSS++D +LVAA+PEGPLT+G ++SKVG++L
Sbjct  186  STKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSKVGALL  245

Query  248  LVELLINQLLTHSPDYLQASEHSASATLSLL  278
            LV++LIN LL   P+Y  +   +A   L+L+
Sbjct  246  LVDVLINTLLDVYPEYSASVFGTAEVILPLM  276

32) A3UG_18085 in NC_018079


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  170 bits (630),  Expect = 5e-44, Method: Compositional matrix adjust.
 Identities = 118/271 (44%), Positives = 191/271 (71%), Gaps = 3/271 (1%)

Query  6    NLLLKLRQEASGYSPTQKKLGEFVLNDPARVLYLTITELARESHTSEASVTRLCRTLGCK  65
            NL+++LR ++   S   + ++++VL+++  V Y TIT+LA ++ TSEA+V RLCR LG K
Sbjct  6    NLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDLGYK  65

Query  66   GYNEFKMALALDIQQG---QPARAAGDDIDNVVDESVQALQDTarlldralleqaaqalh  122
            GY++F+MALA+D+ Q+     ++  GD  +   + +V++L DTA+L+DRA L++  + +H
Sbjct  66   GYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICELVH  125

Query  123  qahaVQIYGVAASAILGEYLHYKLLRLGKPAQLFSDMHRAAMNATTLSAQTLVVAISSSG  182
             A  +   GV+AS+I+G YL Y+L+R+GK A ++ D H AAM+A          AISSSG
Sbjct  126  GAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFAISSSG  185

Query  183  STRDLLHVVKLARKRGVKVLSLSNTPRSPLASLSDIQLVAAKPEGPLSAGALNAKVGVML  242
            ST++++H    A++RGV V+SL+N ++SPL+S+SD  LVAA+PEGPL++GA+++KVG +L
Sbjct  186  STKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSKVGALL  245

Query  243  LVELLTTSLIAIDAHYSDVSQQTASATLPLL  273
            LV++L  +L+ + ++YS     TA   LPL+
Sbjct  246  LVDVLINTLLDVYPEYSASVFGTAEVILPLM  276

33) RORB6_23680 in NC_021066


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  169 bits (626),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 123/276 (45%), Positives = 193/276 (70%), Gaps = 3/276 (1%)

Query  1    MSENENLLLRLRQGVSGYSPTQQKLGEFVLGDPAKVLYLTITELARESETSEASVTRLCR  60
            M+   NL++RLR      S   + ++++VL ++  V Y TIT+LA ++ TSEA+V RLCR
Sbjct  1    MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR  60

Query  61   TLGCKGYNEFKMALALDIQQG--QPTQRSGDEIDNVVNES-VQALQDTAKlldralleqa  117
             LG KGY++F+MALA+D+ Q+  Q+  + +++I +V  +S V++L DTAKL+DRA L++ 
Sbjct  61   DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI  120

Query  118  aqalhqadavqIYGVAASAILGEYLHYKLLRLGKPAQLFSDMHRAAMNATTLSKNTLVVA  177
             + +H A  +   GV+AS+I+G YL Y+L+R+GK A ++ D H AAM+A          A
Sbjct  121  CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA  180

Query  178  ISSSGSTRDLLHVVKLARKRGVQVLSLSNTPRSPLASLSDIQLVAAKPEGPLSAGALNAK  237
            ISSSGST++++H    A++RGV V+SL+N ++SPL+S+SD  LVAA+PEGPL++GA+++K
Sbjct  181  ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK  240

Query  238  VGVMLLVELLTTSLIALDEHYSDVNQQTASATLPLL  273
            VG +LLV++L  +L+ +  +YS     TA   LPL+
Sbjct  241  VGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLM  276

34) EBL_c08530 in NC_017910


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  165 bits (609),  Expect = 2e-42, Method: Compositional matrix adjust.
 Identities = 118/276 (43%), Positives = 196/276 (72%), Gaps = 3/276 (1%)

Query  1    MSENENLLLRLRQSVDGYSRTQQKLGEFVLSDPAKVVYLTITELARESSTSEASVTRLCR  60
            M+   NL++RLR + +  S+  + ++++VL ++  V Y TIT+LA ++ TSEA+V RLCR
Sbjct  1    MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR  60

Query  61   ALGCKGYNEFKMALALDIQQSQPVYQP--EDEIDSVVSES-VQalrdttrlldrallena  117
             LG KGY++F+MALA+D+ QS    QP  +++I  V ++S V++L DT++L+DRA L+  
Sbjct  61   DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI  120

Query  118  alalhhaQSVQIYGVAASAILGEYLHYKMLRFGKPAQLFSDMHRAAMNATTLSKDALVVA  177
               +H A+ +   GV+AS+I+G YL Y+++R+GK A ++ D H AAM+A     +    A
Sbjct  121  CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA  180

Query  178  ISSSGSTRDLLHVVKLARKRSVPILALSNTPQSPLASLSDIQLVAAKPEGPLSAGALNTK  237
            ISSSGST++++H    A++R+VP+++L+N ++SPL+S+SD  LVAA+PEGPL++GA+++K
Sbjct  181  ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK  240

Query  238  VGVMLLIELLTTSLIAIDKHYNDISQQTASSTLPLL  273
            VG +LL+++L  +L+ +  +Y+     TA   LPL+
Sbjct  241  VGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLM  276

35) D781_1577 in NC_020064


> EU272902|24|G23|167832530|ACA01840.1|Vibrio_cholerae_Amazonia_3509|-|33400..34236|-|VPI2_0023c|RpiR 
family transcriptional 
regulator
Length=278

 Score =  162 bits (599),  Expect = 1e-41, Method: Compositional matrix adjust.
 Identities = 120/271 (45%), Positives = 196/271 (73%), Gaps = 2/271 (0%)

Query  5    NLLLRLRQELAGYSPTLQKLGTYVIEHPGQVLYFTITELARESGASEASITRLCRHVGCK  64
            NL++RLR +    S  L+ ++ YV+E++ +V Y TIT+LA ++ +SEA++ RLCR++G K
Sbjct  6    NLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDLGYK  65

Query  65   GYTEFKMALALCVQQGAAAADPVRSGS--ETLVEESVQALRDTGalldrqalqqaaqalh  122
            GY++F+MALA+ + Q+A  ++P   G   E   + +V++L DT+ L+DR AL++  + +H
Sbjct  66   GYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICELVH  125

Query  123  qartlqIYGVAASAIIGDFLQYKLLRAGKPAQLFSDMHRAAMNAASLTAGDVAIAISSSG  182
             A+ +   GV+AS+I+G +L Y+L+R GK A ++ D H AAM+A+    GD  +AISSSG
Sbjct  126  GAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFAISSSG  185

Query  183  STKDVLHAVSQARQHHAQVIVISNTQRSPlakladvllvaaRPEGPLNAGALPAKVGAML  242
            STK+V+HA +QA+Q+   V+ ++N  +SPL+ ++D +LVAARPEGPL +GA+++KVGA+L
Sbjct  186  STKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSKVGALL  245

Query  243  LVELLVAEMTQLDPAYGRSVQDTASATLPLL  273
            LV++L+  + ++ P Y+ SV +TA   LPL+
Sbjct  246  LVDVLINTLLDVYPEYSASVFGTAEVILPLM  276