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Homologs of avrF gene of AY597281

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) shcE
( NP_791203.1 )

type III chaperone ShcE

NC_004578
(Pseudomonas syringae DC3000)

2e-34

2) avrF
( YP_273526.1 )

type III chaperone protein AvrF

NC_005773
(Pseudomonas syringae 1448A)

3e-34

3) Psyr_1187
( YP_234279.1 )

hypothetical protein

NC_007005
(Pseudomonas syringae B728a)

1e-33

4) dspF
( YP_003539938.1 )

avirulence protein

NC_013971
(Erwinia amylovora ATCC 49946)

7e-24

5) dspF
( YP_003529916.1 )

Hrp secreted pathogenicity-like protein

NC_013961
(Erwinia amylovora CFBP1430)

7e-24

6) dspF
( YP_005804063.1 )

Hrp secreted pathogenicity-related protein

NC_017390
(Erwinia pyrifoliae DSM 12163)

1e-23

7) dspF
( YP_002650046.1 )

hrp/hrc type III secretion system-Hrp elicitor/effector region-dsp protein B/F

NC_012214
(Erwinia pyrifoliae Ep1/96)

1e-23

8) dspF
( YP_005818283.1 )

hrp/hrc Type III secretion system-Hrp elicitor/effector region-dsp protein B/F

NC_017445
(Erwinia sp. Ejp617)

3e-23

9) dspF
( YP_001906491.1 )

protein DspF

NC_010694
(Erwinia tasmaniensis Et1/99)

2e-22

10) Dd586_2005
( YP_003333566.1 )

DspFAvrF family protein

NC_013592
(Dickeya dadantii Ech586)

2e-20

11) Dd1591_2023
( YP_003004348.1 )

DspFAvrF family protein

NC_012912
(Dickeya zeae Ech1591)

6e-20

12) Ser39006_2860
( YP_008523242.1 )

Tir chaperone family protein

NC_022268
(Serratia sp. ATCC 39006)

5e-19

13) dspF
( YP_003883117.1 )

protein DspF

NC_014500
(Dickeya dadantii 3937)

8e-19

14) PSEBR_a5377
( YP_004356887.1 )

type III chaperone protein

NC_015379
(Pseudomonas brassicacearum NFM421)

1e-17

15) avrF
( YP_005210964.1 )

AvrF, srcB

NC_016830
(Pseudomonas fluorescens F113)

5e-15

• Sequence Alignments

1) shcE in NC_004578


> AY597281|25|G25|51103128|AAT96271.1|Pseudomonas_viridiflava_ME3.1b|-|27468..27866|avrF|-|AvrF
Length=132

 Score =  138 bits (507),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 73/125 (59%), Positives = 101/125 (81%), Gaps = 0/125 (0%)

Query  3    MKTSQPDFARFINSLGAQLGTSLTLQNGVCALYDGQNNEAAIIELPEHSEMVIFHCRIGR  62
            M  SQ D  RFI  L+A LGT+LTLQNGVCALYDGQ+ +AA+IE++ HS+ V++H R+G+
Sbjct  1    MANSQRDMQRFIARLSATLGTPLTLQNGVCALYDGQQRQAAVIEVAAHSDHVVIHSRLGQ  60

Query  63   CPERAPDLLRLLSLNFDVARLHGCWFAVDQGDVRLCAQRELASLDEPAFCDVTRGFISQA  122
                + +L RLLS NFD A+L+GCW+A+DQ DVRLC+QRELA+LDE +FCD+  GFI+Q+
Sbjct  61   LRKSPENLQRLLSANFDTAKLRGCWLALDQQDVRLCTQRELAGLDEGTFCDLVNGFIAQT  120

Query  123  REARA  127
            +++R+
Sbjct  121  QQTRT  125

2) avrF in NC_005773


> AY597281|25|G25|51103128|AAT96271.1|Pseudomonas_viridiflava_ME3.1b|-|27468..27866|avrF|-|AvrF
Length=132

 Score =  137 bits (504),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 73/125 (59%), Positives = 101/125 (81%), Gaps = 0/125 (0%)

Query  1    MRNPTPDFARFINALGVQLGTSLALQNGVCALYDGQNNEAAVIELPEHSEMVVFHCRVGR  60
            M N+  D  RFI  L+  LGT+L+LQNGVCALYDGQ+ +AAVIE++ HS+ VV+H R+G+
Sbjct  1    MANSQRDMQRFIARLSATLGTPLTLQNGVCALYDGQQRQAAVIEVAAHSDHVVIHSRLGQ  60

Query  61   CPERSTDLQRLLSLNFDVARLHGCWFAIDQGDVRLCAQRELASLDEPAFCDVTRGFISQA  120
                + +LQRLLS NFD A+L+GCW+A+DQ DVRLC+QRELA+LDE +FCD+  GFI+Q+
Sbjct  61   LRKSPENLQRLLSANFDTAKLRGCWLALDQQDVRLCTQRELAGLDEGTFCDLVNGFIAQT  120

Query  121  REARA  125
            +++R+
Sbjct  121  QQTRT  125

3) Psyr_1187 in NC_007005


> AY597281|25|G25|51103128|AAT96271.1|Pseudomonas_viridiflava_ME3.1b|-|27468..27866|avrF|-|AvrF
Length=132

 Score =  135 bits (497),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 71/125 (57%), Positives = 102/125 (82%), Gaps = 0/125 (0%)

Query  1    MNTSQHEFSRFITALGAQLGTSLTWQNGVCALYDSQDNEAAVIELPEHSEMVIFHCRVGR  60
            M  SQ++  RFI+ L+A LGT+LT QNGVCALYD+Q+ +AAVIE++ HS+ V++H R+G+
Sbjct  1    MANSQRDMQRFIARLSATLGTPLTLQNGVCALYDGQQRQAAVIEVAAHSDHVVIHSRLGQ  60

Query  61   CPERSADLQQLLSLNFDVARLHGCWFAVDQGDVRLCAQRELVSLDEPAFCDVTRGFIAQA  120
                + +LQ+LLS NFD A+L+GCW+A+DQ DVRLC+QREL +LDE +FCD+  GFIAQ+
Sbjct  61   LRKSPENLQRLLSANFDTAKLRGCWLALDQQDVRLCTQRELAGLDEGTFCDLVNGFIAQT  120

Query  121  REARA  125
            +++R+
Sbjct  121  QQTRT  125

4) dspF in NC_013971


> AY597281|25|G25|51103128|AAT96271.1|Pseudomonas_viridiflava_ME3.1b|-|27468..27866|avrF|-|AvrF
Length=132

 Score =  103 bits (373),  Expect = 7e-24, Method: Compositional matrix adjust.
 Identities = 58/133 (44%), Positives = 94/133 (71%), Gaps = 3/133 (2%)

Query  1    MTSSQQRVERFLQYFSAGCKTPIHLKDGVCALYNEQDEEAAVLEVPQHSDSLLLHCRIIE  60
            M++SQ+ ++RF+  +SA   TP+ L++GVCALY+ Q+ +AAV+EV+ HSD +++H R+  
Sbjct  1    MANSQRDMQRFIARLSATLGTPLTLQNGVCALYDGQQRQAAVIEVAAHSDHVVIHSRL--  58

Query  61   ADPQTSITLYSMLLQLNFEMAAMRGCWLALDELHNVRLCFQQSLEHLDEASFSDIVSGFI  120
            ++ + S      LL  NF+ A +RGCWLALD+ ++VRLC Q+ L  LDE++F D+V+GFI
Sbjct  59   GQLRKSPENLQRLLSANFDTAKLRGCWLALDQ-QDVRLCTQRELAGLDEGTFCDLVNGFI  117

Query  121  EHAAEVREYIAQL  133
             ++ + R  +  L
Sbjct  118  AQTQQTRTAVVSL  130

5) dspF in NC_013961


> AY597281|25|G25|51103128|AAT96271.1|Pseudomonas_viridiflava_ME3.1b|-|27468..27866|avrF|-|AvrF
Length=132

 Score =  103 bits (373),  Expect = 7e-24, Method: Compositional matrix adjust.
 Identities = 58/133 (44%), Positives = 94/133 (71%), Gaps = 3/133 (2%)

Query  1    MTSSQQRVERFLQYFSAGCKTPIHLKDGVCALYNEQDEEAAVLEVPQHSDSLLLHCRIIE  60
            M++SQ+ ++RF+  +SA   TP+ L++GVCALY+ Q+ +AAV+EV+ HSD +++H R+  
Sbjct  1    MANSQRDMQRFIARLSATLGTPLTLQNGVCALYDGQQRQAAVIEVAAHSDHVVIHSRL--  58

Query  61   ADPQTSITLYSMLLQLNFEMAAMRGCWLALDELHNVRLCFQQSLEHLDEASFSDIVSGFI  120
            ++ + S      LL  NF+ A +RGCWLALD+ ++VRLC Q+ L  LDE++F D+V+GFI
Sbjct  59   GQLRKSPENLQRLLSANFDTAKLRGCWLALDQ-QDVRLCTQRELAGLDEGTFCDLVNGFI  117

Query  121  EHAAEVREYIAQL  133
             ++ + R  +  L
Sbjct  118  AQTQQTRTAVVSL  130

6) dspF in NC_017390


> AY597281|25|G25|51103128|AAT96271.1|Pseudomonas_viridiflava_ME3.1b|-|27468..27866|avrF|-|AvrF
Length=132

 Score =  102 bits (371),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 56/131 (43%), Positives = 92/131 (71%), Gaps = 3/131 (2%)

Query  1    MTASQQQVERFLQYFSAGCKTPIHLKDGVCALYNEQNEEAAVLEIPEHSDSLLLHCRIIE  60
            M+ SQ++++RF+  +SA   TP+ L++GVCALY+ Q+ +AAV+E++ HSD +++H R+  
Sbjct  1    MANSQRDMQRFIARLSATLGTPLTLQNGVCALYDGQQRQAAVIEVAAHSDHVVIHSRL--  58

Query  61   TDPQTSITLYSMLLQLNFEMAAMRGCWLALDELHNVRLCFQQPLEHLDEASFSDIISGFI  120
             + + S      LL  NF+ A +RGCWLALD+ ++VRLC Q+ L  LDE++F D+++GFI
Sbjct  59   GQLRKSPENLQRLLSANFDTAKLRGCWLALDQ-QDVRLCTQRELAGLDEGTFCDLVNGFI  117

Query  121  EQAAEVREYIA  131
             Q+ + R  + 
Sbjct  118  AQTQQTRTAVV  128

7) dspF in NC_012214


> AY597281|25|G25|51103128|AAT96271.1|Pseudomonas_viridiflava_ME3.1b|-|27468..27866|avrF|-|AvrF
Length=132

 Score =  102 bits (371),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 56/131 (43%), Positives = 92/131 (71%), Gaps = 3/131 (2%)

Query  1    MTASQQQVERFLQYFSAGCKTPIHLKDGVCALYNEQNEEAAVLEIPEHSDSLLLHCRIIE  60
            M+ SQ++++RF+  +SA   TP+ L++GVCALY+ Q+ +AAV+E++ HSD +++H R+  
Sbjct  1    MANSQRDMQRFIARLSATLGTPLTLQNGVCALYDGQQRQAAVIEVAAHSDHVVIHSRL--  58

Query  61   TDPQTSITLYSMLLQLNFEMAAMRGCWLALDELHNVRLCFQQPLEHLDEASFSDIISGFI  120
             + + S      LL  NF+ A +RGCWLALD+ ++VRLC Q+ L  LDE++F D+++GFI
Sbjct  59   GQLRKSPENLQRLLSANFDTAKLRGCWLALDQ-QDVRLCTQRELAGLDEGTFCDLVNGFI  117

Query  121  EQAAEVREYIA  131
             Q+ + R  + 
Sbjct  118  AQTQQTRTAVV  128

8) dspF in NC_017445


> AY597281|25|G25|51103128|AAT96271.1|Pseudomonas_viridiflava_ME3.1b|-|27468..27866|avrF|-|AvrF
Length=132

 Score =  101 bits (366),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 56/131 (43%), Positives = 92/131 (71%), Gaps = 3/131 (2%)

Query  1    MTASQQQVERFLQYFSAGCKTPIHLKDGVCALYNEQNEEAAVLEIPEHSDSLLLHCQIIE  60
            M+ SQ++++RF+  +SA   TP+ L++GVCALY+ Q+ +AAV+E++ HSD +++H ++  
Sbjct  1    MANSQRDMQRFIARLSATLGTPLTLQNGVCALYDGQQRQAAVIEVAAHSDHVVIHSRL--  58

Query  61   TDPQTSITLYSMLLQLNFEMAAMRGCWLALDELHNVRLCFQQPLEHLDEASFSDIVSGFI  120
             + + S      LL  NF+ A +RGCWLALD+ ++VRLC Q+ L  LDE++F D+V+GFI
Sbjct  59   GQLRKSPENLQRLLSANFDTAKLRGCWLALDQ-QDVRLCTQRELAGLDEGTFCDLVNGFI  117

Query  121  EQAAEVREYIA  131
             Q+ + R  + 
Sbjct  118  AQTQQTRTAVV  128

9) dspF in NC_010694


> AY597281|25|G25|51103128|AAT96271.1|Pseudomonas_viridiflava_ME3.1b|-|27468..27866|avrF|-|AvrF
Length=132

 Score = 98.3 bits (354),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 57/133 (43%), Positives = 94/133 (71%), Gaps = 3/133 (2%)

Query  1    MTSSQQRVEKLLQHFSAGCKTPLNLKEGVCALYNEQGEEVAVLEVPEHSDSLLLHCQLVE  60
            M++SQ+ +++++ ++SA   TPL L++GVCALY+ Q  + AV+EV+ HSD +++H +L +
Sbjct  1    MANSQRDMQRFIARLSATLGTPLTLQNGVCALYDGQQRQAAVIEVAAHSDHVVIHSRLGQ  60

Query  61   TDPQASIALYPMLLQLNFEMAAMRGCWLALDELHKVRLCFQQPLAQLGEAEFSHVVSGFI  120
               +++  L   LL  NF+ A +RGCWLALD+ + VRLC Q+ LA L+E+ F ++V+GFI
Sbjct  61   L-RKSPENL-QRLLSANFDTAKLRGCWLALDQ-QDVRLCTQRELAGLDEGTFCDLVNGFI  117

Query  121  EQAAEVREFIVQL  133
             Q+ + R  +V L
Sbjct  118  AQTQQTRTAVVSL  130

10) Dd586_2005 in NC_013592


> AY597281|25|G25|51103128|AAT96271.1|Pseudomonas_viridiflava_ME3.1b|-|27468..27866|avrF|-|AvrF
Length=132

 Score = 92.3 bits (331),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 53/131 (41%), Positives = 91/131 (70%), Gaps = 3/131 (2%)

Query  1    MTSAQQQAARLLQHFSQFNHTRLTLNNGICVLNDAQGQEAAVIEVPAQSDNLLLHCQIVN  60
            M+++Q++  R++ ++S    T LTL+NG+C L D+Q ++AAVIEV+A+SD++++H ++ +
Sbjct  1    MANSQRDMQRFIARLSATLGTPLTLQNGVCALYDGQQRQAAVIEVAAHSDHVVIHSRLGQ  60

Query  61   LQGEERPAIYRLMLLLNFEMAAMRGCWLALDEFDNLRLCTQHPLDTLDEPGFTSLLTGYI  120
            L+    P   + +L  NF+ A +RGCWLALD+ +++RLCTQ+ L  LDE  F  L+ G+I
Sbjct  61   LR--KSPENLQRLLSANFDTAKLRGCWLALDQ-QDVRLCTQRELAGLDEGTFCDLVNGFI  117

Query  121  RQVSDVRAFIT  131
             Q  + R+ + 
Sbjct  118  AQTQQTRTAVV  128

11) Dd1591_2023 in NC_012912


> AY597281|25|G25|51103128|AAT96271.1|Pseudomonas_viridiflava_ME3.1b|-|27468..27866|avrF|-|AvrF
Length=132

 Score = 90.2 bits (323),  Expect = 6e-20, Method: Compositional matrix adjust.
 Identities = 54/130 (42%), Positives = 93/130 (72%), Gaps = 3/130 (2%)

Query  1    MTSAQQQAARLLQHFSQFNKTRLTLNNGICVLNGADGREAAVIEVPAQSDNLLLHCQVVN  60
            M+++Q++  R++ ++S    T LTL+NG+C L +++ R+AAVIEV+A+SD++++H ++ +
Sbjct  1    MANSQRDMQRFIARLSATLGTPLTLQNGVCALYDGQQRQAAVIEVAAHSDHVVIHSRLGQ  60

Query  61   LKGENRAAIYRLMLLLNFEMAAMRGCWLALDEFDNLRLCSQYPLDKLDEPGFNALLNGYI  120
            L+  +   + RL L  NF+ A +RGCWLALD+ +++RLC+Q  L  LDE  F  L+NG+I
Sbjct  61   LR-KSPENLQRL-LSANFDTAKLRGCWLALDQ-QDVRLCTQRELAGLDEGTFCDLVNGFI  117

Query  121  RQVAETRSFI  130
             Q  +TR+ +
Sbjct  118  AQTQQTRTAV  127

12) Ser39006_2860 in NC_022268


> AY597281|25|G25|51103128|AAT96271.1|Pseudomonas_viridiflava_ME3.1b|-|27468..27866|avrF|-|AvrF
Length=132

 Score = 87.3 bits (312),  Expect = 5e-19, Method: Compositional matrix adjust.
 Identities = 47/115 (41%), Positives = 85/115 (74%), Gaps = 3/115 (2%)

Query  21   TEITLNEGICVLLGDDGQEAAVIEVPEHGDSLLVHCQILNLQGEENPVVYKLMLQLNFEM  80
            T +TL++G+C L +++ ++AAVIEV+ H+D +++H ++ +L+   +P   + +L  NF+ 
Sbjct  21   TPLTLQNGVCALYDGQQRQAAVIEVAAHSDHVVIHSRLGQLR--KSPENLQRLLSANFDT  78

Query  81   AAMRGCWLALDEYYNLRLCAQHSLATLDEARFSAILSGFIQQVKETQSFIASLLE  135
            A +RGCWLALD+  ++RLC+Q+ LA LDE+ F  +++GFI Q ++T++ + SLL+
Sbjct  79   AKLRGCWLALDQQ-DVRLCTQRELAGLDEGTFCDLVNGFIAQTQQTRTAVVSLLN  132

13) dspF in NC_014500


> AY597281|25|G25|51103128|AAT96271.1|Pseudomonas_viridiflava_ME3.1b|-|27468..27866|avrF|-|AvrF
Length=132

 Score = 86.5 bits (309),  Expect = 8e-19, Method: Compositional matrix adjust.
 Identities = 50/109 (46%), Positives = 80/109 (74%), Gaps = 5/109 (4%)

Query  38   LMLNNGICVLNGADGREAAVIEVPAHSDNLLLHCQVVSL-KGEDRLAVYRLMLLLNFEMA  96
            L L+NG+C L +++ R+AAVIEV+AHSD++++H ++  L K+ + L   + +L  NF+ A
Sbjct  23   LTLQNGVCALYDGQQRQAAVIEVAAHSDHVVIHSRLGQLRKSPENL---QRLLSANFDTA  79

Query  97   AMRGCWLALDEYDNLRLCSQYPLDKLDEAGFSALMNGYIRQVEETRTFI  145
             +RGCWLALD+ +++RLC+Q  L  LDE+ F  L+NG+I Q ++TRT +
Sbjct  80   KLRGCWLALDQ-QDVRLCTQRELAGLDEGTFCDLVNGFIAQTQQTRTAV  127

14) PSEBR_a5377 in NC_015379


> AY597281|25|G25|51103128|AAT96271.1|Pseudomonas_viridiflava_ME3.1b|-|27468..27866|avrF|-|AvrF
Length=132

 Score = 82.8 bits (295),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 54/118 (46%), Positives = 79/118 (67%), Gaps = 1/118 (0%)

Query  8    QRLISALAEHLHADLQLEGGVCALYDASNREAVVIELPGHGDVAILHSSIDVPAHAPGLH  67
            QR+I+ L+  L + L L+ GVCALYD+ +R+A VIE+++H+D  ++HS ++    +P   
Sbjct  9    QRFIARLSATLGTPLTLQNGVCALYDGQQRQAAVIEVAAHSDHVVIHSRLGQLRKSPENL  68

Query  68   KRllelnfrldllGGSWLALDDKSSVRLCAHCPLAMLDEVQFCHWVVGFIAQVGDVRA  125
            +RLL  NF    L G WLALD++  VRLC++  LA LDE  FC+ V GFIAQ  + R+
Sbjct  69   QRLLSANFDTAKLRGCWLALDQQ-DVRLCTQRELAGLDEGTFCDLVNGFIAQTQQTRT  125

15) avrF in NC_016830


> AY597281|25|G25|51103128|AAT96271.1|Pseudomonas_viridiflava_ME3.1b|-|27468..27866|avrF|-|AvrF
Length=132

 Score = 73.9 bits (261),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 54/118 (46%), Positives = 77/118 (66%), Gaps = 1/118 (0%)

Query  8    QRLISalaehlhahlQLEGGVCALYDASNREAVVIELPDHGDVAILHCLIDVPAHAPGLH  67
            QR+I+ L+  L + L L+ GVCALYD+ +R+A VIE++ H+D  ++H  ++    +P   
Sbjct  9    QRFIARLSATLGTPLTLQNGVCALYDGQQRQAAVIEVAAHSDHVVIHSRLGQLRKSPENL  68

Query  68   KRllelnfrldllGGSWLALDDKSSVRLCAHCPLAMLDEVQFCHWVVGFIAQVAEVRT  125
            +RLL  NF    L G WLALD++  VRLC++  LA LDE  FC+ V GFIAQ  + RT
Sbjct  69   QRLLSANFDTAKLRGCWLALDQQ-DVRLCTQRELAGLDEGTFCDLVNGFIAQTQQTRT  125