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Homologs of hrcC gene of AY597282

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrcC
( YP_050195.1 )

type III secretion system protein

NC_004547
(Pectobacterium atrosepticum SCRI1043)

2e-173

2) PC1_2192
( YP_003017767.1 )

type III secretion outer membrane pore, YscC/HrcC family

NC_012917
(Pectobacterium carotovorum PC1)

2e-173

3) PCC21_022700
( YP_006646926.1 )

HrcC

NC_018525
(Pectobacterium carotovorum PCC21)

4e-173

4) hrcC
( YP_003883223.1 )

type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG)

NC_014500
(Dickeya dadantii 3937)

5e-165

5) Dd1591_1907
( YP_003004236.1 )

type III secretion outer membrane pore, YscC/HrcC family

NC_012912
(Dickeya zeae Ech1591)

5e-165

6) hrcC
( YP_003539947.1 )

type III secretion system protein

NC_013971
(Erwinia amylovora ATCC 49946)

1e-164

7) hrcC
( YP_003529907.1 )

type III secretion system outer membrane pore HrcC

NC_013961
(Erwinia amylovora CFBP1430)

1e-164

8) hrcC
( YP_005818274.1 )

hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcC protein

NC_017445
(Erwinia sp. Ejp617)

3e-163

9) Ser39006_2900
( YP_008523282.1 )

type III secretion outer membrane pore, YscC/HrcC family

NC_022268
(Serratia sp. ATCC 39006)

7e-163

10) hrcC
( YP_001906482.1 )

HrcC protein

NC_010694
(Erwinia tasmaniensis Et1/99)

1e-162

11) hrcC
( YP_005804072.1 )

type III secretion system outer membrane pore HrcC

NC_017390
(Erwinia pyrifoliae DSM 12163)

2e-162

12) hrcC
( YP_002650055.1 )

Hrp/hrc secretion/translocation pathway protein HrcC

NC_012214
(Erwinia pyrifoliae Ep1/96)

2e-162

13) D781_3931
( YP_007346306.1 )

type III secretion outer membrane pore, YscC/HrcC family

NC_020064
(Serratia marcescens FGI94)

2e-161

14) PSEBR_a5375
( YP_004356884.1 )

type III secretion protein

NC_015379
(Pseudomonas brassicacearum NFM421)

6e-155

15) hrcC
( YP_005210961.1 )

protein HrcC

NC_016830
(Pseudomonas fluorescens F113)

2e-154

16) Marme_1063
( YP_004312174.1 )

type III secretion outer membrane pore, YscC/HrcC family

NC_015276
(Marinomonas mediterranea MMB-1)

3e-142

17) rscC
( YP_006322237.1 )

type III secretion outer membrane protein RscC

NC_017911
(Pseudomonas fluorescens A506)

4e-142

18) H045_00215
( YP_007395615.1 )

putative type III secretion protein

NC_020209
(Pseudomonas poae RE*1-1-14)

9e-141

19) Pmen_0023
( YP_001185530.1 )

YscC/HrcC family type III secretion outer membrane protein

NC_009439
(Pseudomonas mendocina ymp)

9e-139

20) hrcC
( NP_791216.2 )

outer-membrane type III secretion protein HrcC

NC_004578
(Pseudomonas syringae DC3000)

4e-137

21) rscC
( YP_002870386.1 )

putative type III secretion protein

NC_012660
(Pseudomonas fluorescens SBW25)

2e-136

22) HrcC
( YP_234292.1 )

outer-membrane type III secretion protein HrcC

NC_007005
(Pseudomonas syringae B728a)

3e-136

23) hrcC
( YP_273539.1 )

type III outer membrane protein HrcC

NC_005773
(Pseudomonas syringae 1448A)

1e-135

• Sequence Alignments

1) hrcC in NC_004547


> AY597282|28|G28|51103173|AAT96315.1|Pseudomonas_viridiflava_RMX23.1a|-|28074..30335|hrcC|-|HrcC
Length=753

 Score =  602 bits (2275),  Expect = 2e-173, Method: Compositional matrix adjust.
 Identities = 346/633 (55%), Positives = 499/633 (79%), Gaps = 9/633 (1%)

Query  42   AATPADWNKGAYAYSAEQTPLSAILADFANSHGVDLVLGNIADNEVTAKIRADNPTLFLD  101
            A+ P +W ++AYAY A QTPL+ +L+DFA+S GV+L    I++  V AKIRA+N+  FLD
Sbjct  106  AGVPEEWRQSAYAYEASQTPLTKVLSDFASSYGVGLDSRGITGV-VDAKIRAGNAQEFLD  164

Query  102  RLALEHRFQWFVYNNALYVSPQDEQASVRLEISPDAAPDIKQALSGIGLIDSRFGWGELP  161
            RLALEH+FQWF+YN  LYVSPQ  Q S RLE+S+DAAPD+KQAL++IGL+D RFGWGELP
Sbjct  165  RLALEHQFQWFLYNGKLYVSPQSGQVSQRLEVSADAAPDLKQALTDIGLLDKRFGWGELP  224

Query  162  EEGVVLVTGPKAYIDLIRNFSQQREKQDERRKVMIFPLRYASVSDRTLQYRDQKITIPGV  221
            +EGVVLV+GP  Y++LIR FS+++ K +++++VM+F+LRYA+V+DR +QYR+Q ITIPGV
Sbjct  225  DEGVVLVSGPARYVELIRGFSKEKVKAQDKHQVMMFSLRYAAVADREIQYREQSITIPGV  284

Query  222  ATILNELMDGQRAAPAGASGPMPVQPDTGMEAMRDSTRSLMTRLAT--RTSPGRSGEASS  279
            AT+L+ L+++Q+ +P     +  ++   +M+ M D  +S +  LA+  +++P+RSGE+ S
Sbjct  285  ATLLDGLLESQHRPPLPQDPAANIR---AMQDMADMGQSKIMNLASNRKATPARSGESKS  341

Query  280  RVTLSGKISADVRNNALLIRDDEKRRAEYQQLVEHIDVPQNLVNIDAIILDVDRTALSRL  339
                + ++ ADVRNNA+LI DD  +R  YQQLV+++D P NLV+IDA+ILD+DR+ LS L
Sbjct  342  NS--NRRVVADVRNNAVLIYDDPEKRETYQQLVQQLDQPSNLVEIDAVILDIDRSQLSSL  399

Query  340  EANWQAQLGNVSAGSTMMMG-RSTLFVSDFKRFFADIQALEGEGTASIVANPSVLTLENQ  398
            E+ W A+ G+V+ GS+++ G  STLF++DF RFFADIQALEG+G AS++A PSVLTLENQ
Sbjct  400  ESRWSARAGSVNFGSSLLTGGSSTLFINDFDRFFADIQALEGQGVASVIARPSVLTLENQ  459

Query  399  PAIVDFSRTAFITATGERVADIQPVTAGTSLQVTPRVIGEGAQRSIQLVIDIEDGQVETG  458
            PA++DFSRTA+IT+TGERVA++QPVTAGTSL+V PR I+      +QL++DIEDGQ+E  
Sbjct  460  PAVIDFSRTAYITTTGERVANVQPVTAGTSLRVIPRTIAGEQPNRFQLIVDIEDGQLERT  519

Query  459  REGEASGVKRGTVSTQALIGENRALVLGGFHVEESGDRDRRIPILGDIPLLGKLFTSTRH  518
            R+ ++++VKRGTVSTQA+IGENR+LV+GGFHV+ESG+R+ ++PILG +P++G LFTS RH
Sbjct  520  RDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKVPILGSLPVIGALFTSKRH  579

Query  519  EVSRRERLFILTPHLVGDQTDPTRYVSSVNRQQLNGAMNRVAQRNGKTDLYSLIEGAFRD  578
            EVSRRERLFILTP+LVGDQ DP+RY++  NR QL+ A+   +  + + +    +  +F +
Sbjct  580  EVSRRERLFILTPRLVGDQLDPSRYIARENRPQLDRALALSGSPSTRQQKRDRVSKTFSE  639

Query  579  LASRQLPAGFQADSKGARLGEVCRSQSGLIYDSSRYQWYGNGQVRLSVGVVRNGGTQPQR  638
            LA+ +LP++++  S G  L ++CR + GL  D+SR QW++ +   ++VGVVRN++++++ 
Sbjct  640  LANGRLPPDIKESSSGVALKDLCRVDHGLSIDASRGQWFSGDTFDITVGVVRNDSARAKA  699

Query  639  FDEAACASSRTLAVAVWPKTTLAPGESSEVFLA  671
            F  A+CA++RTLAV++ P T L PG+S+EVF+A
Sbjct  700  FSLASCAGARTLAVTMLPVTELQPGQSTEVFVA  732

2) PC1_2192 in NC_012917


> AY597282|28|G28|51103173|AAT96315.1|Pseudomonas_viridiflava_RMX23.1a|-|28074..30335|hrcC|-|HrcC
Length=753

 Score =  602 bits (2275),  Expect = 2e-173, Method: Compositional matrix adjust.
 Identities = 344/633 (55%), Positives = 495/633 (79%), Gaps = 9/633 (1%)

Query  42   AATPADWNKGAYAYSAEQTPLSAILTDFANSHGVDLVLGNIADNDVTAKIRAETPVLFLD  101
            A+ P +W ++AYAY A QTPL+ +L+DFA+S GV+L    I++  V AKIRA  +  FLD
Sbjct  106  AGVPEEWRQSAYAYEASQTPLTKVLSDFASSYGVGLDSRGITGV-VDAKIRAGNAQEFLD  164

Query  102  RLALEHRFQWFVYNNALYVSPQDEQASVRLEISPDAAPDIKQALSGIGLLDARFGWGELP  161
            RLALEH+FQWF+YN  LYVSPQ  Q S RLE+S+DAAPD+KQAL++IGLLD RFGWGELP
Sbjct  165  RLALEHQFQWFLYNGKLYVSPQSGQVSQRLEVSADAAPDLKQALTDIGLLDKRFGWGELP  224

Query  162  EEGVVLVTGPQAYIDLIRNFSQQREKQDERRKVMIFPLRYASVSDRTLQYRDQKVTIPGV  221
            +EGVVLV+GP  Y++LIR FS+++ K +++++VM+F+LRYA+V+DR +QYR+Q +TIPGV
Sbjct  225  DEGVVLVSGPARYVELIRGFSKEKVKAQDKHQVMMFSLRYAAVADREIQYREQSITIPGV  284

Query  222  ATILNELMDGQRAAPAGASGPMPVQPDTGMEAMRDSTRSLMTRLAT--RNNPGRSGDASS  279
            AT+L+ L+++Q+ +P     +  ++   +M+ M D  +S +  LA+  +  P+RSG++ S
Sbjct  285  ATLLDGLLESQHRPPLPQDPAANIR---AMQDMADMGQSKIMNLASNRKATPARSGESKS  341

Query  280  RVTLSGKISADVRNNALLIRDDEKRRAEYQQLVDHIDVPQNLVNIDAIILDVDRTALSRL  339
                + ++ ADVRNNA+LI DD  +R  YQQLV+++D P NLV+IDA+ILD+DR+ LS L
Sbjct  342  NS--NRRVVADVRNNAVLIYDDPEKRETYQQLVQQLDQPSNLVEIDAVILDIDRSQLSSL  399

Query  340  EANWQAQLGNVSAGSTMMMG-RSTLFVSDFKRFFADIQALEGEGTASIVANPSVLTLENQ  398
            E+ W A+ G+V+ GS+++ G  STLF++DF RFFADIQALEG+G AS++A PSVLTLENQ
Sbjct  400  ESRWSARAGSVNFGSSLLTGGSSTLFINDFDRFFADIQALEGQGVASVIARPSVLTLENQ  459

Query  399  PAIVDFSRTAFITATGERVADIQPVTAGTSLQVTPRVVGEGAQRSIQLVIDIEDGQVETG  458
            PA++DFSRTA+IT+TGERVA++QPVTAGTSL+V PR ++      +QL++DIEDGQ+E  
Sbjct  460  PAVIDFSRTAYITTTGERVANVQPVTAGTSLRVIPRTIAGEQPNRFQLIVDIEDGQLERT  519

Query  459  REGEASGVKRGTVSTQALIGENRALVLGGFHVEESGDRDRRIPILGDIPLLGKLFTSTRH  518
            R+ ++++VKRGTVSTQA+IGENR+LV+GGFHV+ESG+R+ ++PILG +P++G LFTS RH
Sbjct  520  RDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKVPILGSLPVIGALFTSKRH  579

Query  519  EVSRRERLFILTPHLVGDQTDPTRYVSSANRQQLNGAMNRVAQRNGKTDLYSLIEGAFRD  578
            EVSRRERLFILTP+LVGDQ DP+RY++  NR QL+ A+   +  + + +    +  +F +
Sbjct  580  EVSRRERLFILTPRLVGDQLDPSRYIARENRPQLDRALALSGSPSTRQQKRDRVSKTFSE  639

Query  579  LASRQLPAGFKTVSNGARLGEVCRSQSGLIYDSSRYQWYDNGQVRLSVGVVRNGGTQPQR  638
            LA+ +LP+++K  S+G  L ++CR + GL  D+SR QW+  +   ++VGVVRN++++++ 
Sbjct  640  LANGRLPPDIKESSSGVALKDLCRVDHGLSIDASRGQWFSGDTFDITVGVVRNDSARAKA  699

Query  639  FDEAACASSRTLAVAVWPKTTLAPGESSEVFLA  671
            F  A+CA++RTLAV++ P T L PG+S+EVF+A
Sbjct  700  FSLASCAGARTLAVTMLPVTELQPGQSTEVFVA  732

3) PCC21_022700 in NC_018525


> AY597282|28|G28|51103173|AAT96315.1|Pseudomonas_viridiflava_RMX23.1a|-|28074..30335|hrcC|-|HrcC
Length=753

 Score =  601 bits (2271),  Expect = 4e-173, Method: Compositional matrix adjust.
 Identities = 343/633 (55%), Positives = 496/633 (79%), Gaps = 9/633 (1%)

Query  42   AATPADWNKGAYAYSAEQTPLSAILTDFANSHGVDLVLGNIADNEVTAKIRADNPTLFLD  101
            A+ P +W ++AYAY A QTPL+ +L+DFA+S GV+L    I++  V AKIRA+N+  FLD
Sbjct  106  AGVPEEWRQSAYAYEASQTPLTKVLSDFASSYGVGLDSRGITGV-VDAKIRAGNAQEFLD  164

Query  102  RLALEHRFQWFVYNNALYVSSQDEQASVRLEISPDAAPDIKQALSGIGLLDARFGWGELP  161
            RLALEH+FQWF+YN  LYVS+Q  Q S RLE+S+DAAPD+KQAL++IGLLD RFGWGELP
Sbjct  165  RLALEHQFQWFLYNGKLYVSPQSGQVSQRLEVSADAAPDLKQALTDIGLLDKRFGWGELP  224

Query  162  EEGVVLVTGPQAYIDLIRNFSQQREKQDERRKVMIFPLRYASVSDRTLQYRDQKVTIPGV  221
            +EGVVLV+GP  Y++LIR FS+++ K +++++VM+F+LRYA+V+DR +QYR+Q +TIPGV
Sbjct  225  DEGVVLVSGPARYVELIRGFSKEKVKAQDKHQVMMFSLRYAAVADREIQYREQSITIPGV  284

Query  222  ATILNELMDGQRAAPAGASGPMPVQPDNGMEAMRESTRSLMTRLAT--RNNPGRNGEASG  279
            AT+L+ L+++Q+ +P     +  ++   +M+ M +  +S +  LA+  +  P+R+GE+ +
Sbjct  285  ATLLDGLLESQHRPPLPQDPAANIR---AMQDMADMGQSKIMNLASNRKATPARSGESKS  341

Query  280  RVTLSGKISADVRNNALLIRDDEKRRAEYQQLVDHIDVPQNLVNIDAIILDVDRTALSRL  339
                + ++ ADVRNNA+LI DD  +R  YQQLV+++D P NLV+IDA+ILD+DR+ LS L
Sbjct  342  NS--NRRVVADVRNNAVLIYDDPEKRETYQQLVQQLDQPSNLVEIDAVILDIDRSQLSSL  399

Query  340  EANWQAQLGNVSAGSTMMMG-RSTLFVSDFKRFFADIQALEGEGTASIVANPSVLTLENQ  398
            E+ W A+ G+V+ GS+++ G  STLF++DF RFFADIQALEG+G AS++A PSVLTLENQ
Sbjct  400  ESRWSARAGSVNFGSSLLTGGSSTLFINDFDRFFADIQALEGQGVASVIARPSVLTLENQ  459

Query  399  PAIVDFSRTAFITATGERVADIQPVTAGTSLQVTPRVIGEGAQRSIQLVIDIEDGQVETG  458
            PA++DFSRTA+IT+TGERVA++QPVTAGTSL+V PR I+      +QL++DIEDGQ+E  
Sbjct  460  PAVIDFSRTAYITTTGERVANVQPVTAGTSLRVIPRTIAGEQPNRFQLIVDIEDGQLERT  519

Query  459  REGEASGVKRGTVSTQALIGENRALVLGGFHVEESGDRDRRIPILGDIPLLGQLFTSTRH  518
            R+ ++++VKRGTVSTQA+IGENR+LV+GGFHV+ESG+R+ ++PILG +P++G LFTS RH
Sbjct  520  RDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKVPILGSLPVIGALFTSKRH  579

Query  519  EVSRRERLFILTPHLVGDQTDPTRYVSSANRQQLNGAMNRVAQRNGKTDLYSLIEGAFRD  578
            EVSRRERLFILTP+LVGDQ DP+RY++  NR QL+ A+   +  + + +    +  +F +
Sbjct  580  EVSRRERLFILTPRLVGDQLDPSRYIARENRPQLDRALALSGSPSTRQQKRDRVSKTFSE  639

Query  579  LASRQLPAGFQADGKGTRLGEVCRSQSGLIYDSSRYQWYSNGQVRLSVGVVRNGGTQAQR  638
            LA+ +LP++++  + G  L ++CR + GL  D+SR QW+S +   ++VGVVRN++++A+ 
Sbjct  640  LANGRLPPDIKESSSGVALKDLCRVDHGLSIDASRGQWFSGDTFDITVGVVRNDSARAKA  699

Query  639  FDEAACASNRTLAVAVWPKTTLAPGESSEVFLA  671
            F  A+CA+ RTLAV++ P T L PG+S+EVF+A
Sbjct  700  FSLASCAGARTLAVTMLPVTELQPGQSTEVFVA  732

4) hrcC in NC_014500


> AY597282|28|G28|51103173|AAT96315.1|Pseudomonas_viridiflava_RMX23.1a|-|28074..30335|hrcC|-|HrcC
Length=753

 Score =  574 bits (2168),  Expect = 5e-165, Method: Compositional matrix adjust.
 Identities = 351/662 (54%), Positives = 502/662 (76%), Gaps = 18/662 (2%)

Query  12   LYRLFCWSLVLMGMLPIAHAATPPDWSKGAYAYSAEQTPLSAVLQDFANSHGVDLVLGNI  71
            L RLF W  VL     +  A+ P +W ++AYAY A QTPL+ VL DFA+S GV+L    I
Sbjct  88   LKRLF-WISVLCVQAEVVTAGVPEEWRQSAYAYEASQTPLTKVLSDFASSYGVGLDSRGI  146

Query  72   QDINVEAKIRADNAVAFLDRLALEHRFQWFVYNNVLYVSPQDEQTSVRIEVSQDAAPDMK  131
             ++ V+AKIRA+NA  FLDRLALEH+FQWF+YN  LYVSPQ  Q S R+EVS DAAPD+K
Sbjct  147  TGV-VDAKIRAGNAQEFLDRLALEHQFQWFLYNGKLYVSPQSGQVSQRLEVSADAAPDLK  205

Query  132  QALTGIGLLDSRFGWGELPEEGVVLVTGPAEYVNLIRNFSQQRETKEDRRKVMIFPLRYA  191
            QALT+IGLLD RFGWGELP+EGVVLV+GPA YV+LIR FS+++   +D+++VM+F+LRYA
Sbjct  206  QALTDIGLLDKRFGWGELPDEGVVLVSGPARYVELIRGFSKEKVKAQDKHQVMMFSLRYA  265

Query  192  SVSDRTIQYRDQRLVIPGVATILNELMDGNRNTPagasaaasgmgndgamaaasgggqda  251
            +V+DR IQYR+Q + IPGVAT+L+ L+++++  P    +AA+  + ++            
Sbjct  266  AVADREIQYREQSITIPGVATLLDGLLESQHRPPLPQDPAANIRAMQDMADM--------  317

Query  252  sqaIELNARAMLARLatrssggataaarkkDQLNGKVSADVRNNALLIRDDEKRRDEYQQ  311
                   +++ +  LA+   + ++ ++  K + N +V ADVRNNA+LI DD  +R+ YQQ
Sbjct  318  -------GQSKIMNLASNRKATPARSGESKSNSNRRVVADVRNNAVLIYDDPEKRETYQQ  370

Query  312  LIDKIDVPQNLVNIDAIILDVDRTALSRLEANWQGKLGAVTGGANMMSG-SSTLFVSDFK  370
            L++++D P NLV+IDA+ILD+DR+ LS LE+ W ++ G+V  G+++++G SSTLF++DF 
Sbjct  371  LVQQLDQPSNLVEIDAVILDIDRSQLSSLESRWSARAGSVNFGSSLLTGGSSTLFINDFD  430

Query  371  RFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSRTAFITATGERVANVQPVTAGTSL  430
            RFFADIQALEG+G AS++A PSVLTLENQPAVIDFSRTA+IT+TGERVANVQPVTAGTSL
Sbjct  431  RFFADIQALEGQGVASVIARPSVLTLENQPAVIDFSRTAYITTTGERVANVQPVTAGTSL  490

Query  431  QVTPRVVGRGSLSSIQLVIDIEDGQVETNTEGTASGVKRGTVSTQALIGENRALVLGGFH  490
            +V PR ++    + +QL++DIEDGQ+E   +  +++VKRGTVSTQA+IGENR+LV+GGFH
Sbjct  491  RVIPRTIAGEQPNRFQLIVDIEDGQLERTRDNDTPDVKRGTVSTQAVIGENRSLVIGGFH  550

Query  491  VEESGDRDKRVPLLGDIPWIGKLFTSRQHEVSRRERLFILTPHLIGDQNDPTRFVSADNR  550
            V+ESG+R+ +VP+LG +P IG LFTS++HEVSRRERLFILTP+L+GDQ DP+R+++ +NR
Sbjct  551  VDESGERQDKVPILGSLPVIGALFTSKRHEVSRRERLFILTPRLVGDQLDPSRYIARENR  610

Query  551  RQLNDAMGRVAQRNSKTDLFSVVESAMRELASGQTPAGFTIDGSGARLSEFCRTSPSLSY  610
             QL+ A++  +  +++ +    V  +  ELA+G+ P+++   +SG  L ++CR   +LS 
Sbjct  611  PQLDRALALSGSPSTRQQKRDRVSKTFSELANGRLPPDIKESSSGVALKDLCRVDHGLSI  670

Query  611  QSNRHQWYSNLTLSLAVGVVKNIGTRPQRFDEANCASSRTLAVAAWPKTTLAPGESTEVY  670
            +++R QW+S  T+ ++VGVV+N ++R++ F  A+CA++RTLAV+  P T L PG+STEV+
Sbjct  671  DASRGQWFSGDTFDITVGVVRNDSARAKAFSLASCAGARTLAVTMLPVTELQPGQSTEVF  730

Query  671  LA  672
            +A
Sbjct  731  VA  732

5) Dd1591_1907 in NC_012912


> AY597282|28|G28|51103173|AAT96315.1|Pseudomonas_viridiflava_RMX23.1a|-|28074..30335|hrcC|-|HrcC
Length=753

 Score =  574 bits (2167),  Expect = 5e-165, Method: Compositional matrix adjust.
 Identities = 344/664 (52%), Positives = 504/664 (76%), Gaps = 20/664 (3%)

Query  12   LYRLFCWSLVLMGMLPIAHAATPADWSKGAYAYSAEQTPLSAVLQDFANGHGVDLVLGNI  71
            L RLF W  VL     +  A+ P +W ++AYAY A QTPL+ VL DFA++ GV+L    I
Sbjct  88   LKRLF-WISVLCVQAEVVTAGVPEEWRQSAYAYEASQTPLTKVLSDFASSYGVGLDSRGI  146

Query  72   EDVNIETKIRADNAVAFLDRLALEHRFQWFVYNNVLYVSPQDEQTSVRIEVSQDAAPDMK  131
             +V +++KIRA+NA  FLDRLALEH+FQWF+YN  LYVSPQ  Q S R+EVS DAAPD+K
Sbjct  147  TGV-VDAKIRAGNAQEFLDRLALEHQFQWFLYNGKLYVSPQSGQVSQRLEVSADAAPDLK  205

Query  132  QALTGIGLLDSRFGWGELPEEGVVLVTGPTEYINLIRNFSQQRETKEDRRKVMIFPLRYA  191
            QALT+IGLLD RFGWGELP+EGVVLV+GP+ Y++LIR FS+++   +D+++VM+F+LRYA
Sbjct  206  QALTDIGLLDKRFGWGELPDEGVVLVSGPARYVELIRGFSKEKVKAQDKHQVMMFSLRYA  265

Query  192  SVSDRTIQYRDQRLVIPGVATILNELMDGNRNTPagaaaagsgigsdggmttadgagggq  251
            +V+DR IQYR+Q + IPGVAT+L+ L+++++  P    +A++  +               
Sbjct  266  AVADREIQYREQSITIPGVATLLDGLLESQHRPPLPQDPAANIRAM--------------  311

Query  252  dasKAIEMNARSMLAKLasrnsggassasrKKDQLNGKVSADVRNNALLVRDDEKRRDEY  311
               + +   ++S + +LAS   + ++ ++  K + N +V ADVRNNA+L+ DD  +R+ Y
Sbjct  312  ---QDMADMGQSKIMNLASNRKATPARSGESKSNSNRRVVADVRNNAVLIYDDPEKRETY  368

Query  312  QQLIDKIDVPQNLVNIDAIILDVDRTALSRLEANWQGKLGAVTGGANMMSG-SSTLFVSD  370
            QQL++++D P NLV+IDA+ILD+DR+ LS LE+ W ++ G+V  G+++++G SSTLF++D
Sbjct  369  QQLVQQLDQPSNLVEIDAVILDIDRSQLSSLESRWSARAGSVNFGSSLLTGGSSTLFIND  428

Query  371  FKRFSADIQALEGEGTASIVANPSVLTLENQPAVIDFSRTAFITATGERVANVQPVTAGT  430
            F RF ADIQALEG+G AS++A PSVLTLENQPAVIDFSRTA+IT+TGERVANVQPVTAGT
Sbjct  429  FDRFFADIQALEGQGVASVIARPSVLTLENQPAVIDFSRTAYITTTGERVANVQPVTAGT  488

Query  431  SLQVTPRVVGHGGSSSIQLVIDIEDGQVETNTEGTASGVKRGTVSTQALIGENRALVLGG  490
            SL+V PR ++   ++ +QL++DIEDGQ+E   +  +++VKRGTVSTQA+IGENR+LV+GG
Sbjct  489  SLRVIPRTIAGEQPNRFQLIVDIEDGQLERTRDNDTPDVKRGTVSTQAVIGENRSLVIGG  548

Query  491  FHVEESGDRDKRVPLLGDIPWIGKLFTSRQHEVSRRERLFILTPHLIGDQNDPTRFVSAD  550
            FHV+ESG+R+ +VP+LG +P IG LFTS++HEVSRRERLFILTP+L+GDQ DP+R+++ +
Sbjct  549  FHVDESGERQDKVPILGSLPVIGALFTSKRHEVSRRERLFILTPRLVGDQLDPSRYIARE  608

Query  551  NRRQLNDAMGRVAQRNSKTDLFGTVENALRDLASGQTPAGFTIDGSGPTLSEICRTSPSM  610
            NR QL+ A++  +  +++ +  + V +++ +LA+G+ P+++   +SG +L ++CR   ++
Sbjct  609  NRPQLDRALALSGSPSTRQQKRDRVSKTFSELANGRLPPDIKESSSGVALKDLCRVDHGL  668

Query  611  SYQSHRHQWYSNLSLSLTVGVVKNTGTQPLRFDEASCANSRTLAVAAWPKTTLAPGESTE  670
            S ++ R QW+S  ++ +TVGVV+N ++++  F  ASCA +RTLAV+  P T L PG+STE
Sbjct  669  SIDASRGQWFSGDTFDITVGVVRNDSARAKAFSLASCAGARTLAVTMLPVTELQPGQSTE  728

Query  671  VYLA  674
            V++A
Sbjct  729  VFVA  732

6) hrcC in NC_013971


> AY597282|28|G28|51103173|AAT96315.1|Pseudomonas_viridiflava_RMX23.1a|-|28074..30335|hrcC|-|HrcC
Length=753

 Score =  573 bits (2162),  Expect = 1e-164, Method: Compositional matrix adjust.
 Identities = 334/635 (53%), Positives = 494/635 (78%), Gaps = 9/635 (1%)

Query  26   AQTPADWKEQSYAYSADRTPLSTVLQDFADGHSVDLHLGNVEDTEVTAKIRAENASAFLD  85
            A  P +W++ +YAY A +TPL+ VL DFA + +V+L+   + +  V AKIRA NA  FLD
Sbjct  106  AGVPEEWRQSAYAYEASQTPLTKVLSDFASSYGVGLDSRGITGV-VDAKIRAGNAQEFLD  164

Query  86   RLALEHHFQWFVYNNTLYVSPQDEQSSERLEISPDAAPDIKQALSGIGLLDPRFGWGELP  145
            RLALEH+FQWF+YN  LYVSPQ  Q S+RLE+S+DAAPD+KQAL++IGLLD RFGWGELP
Sbjct  165  RLALEHQFQWFLYNGKLYVSPQSGQVSQRLEVSADAAPDLKQALTDIGLLDKRFGWGELP  224

Query  146  DDGVVLVTGPPQYLELVKRFSEQREKKEDRRKVMTFPLRYASVADRTIHYRDQTVVIPGV  205
            D+GVVLV+GP++Y+EL++ FS ++ K +D+++VM F+LRYA+VADR I+YR+Q++ IPGV
Sbjct  225  DEGVVLVSGPARYVELIRGFSKEKVKAQDKHQVMMFSLRYAAVADREIQYREQSITIPGV  284

Query  206  ATMLNELMNGKRAAPASASGIDSTPGGPDTNSMMQNTQTLLSRLSSRNKTSNRAGGRDNE  265
            AT+L+ L+++++ +P +     +  +  D   M Q+    L+  S+R+ T+ R+G   ++
Sbjct  285  ATLLDGLLESQHRPPLPQDPAANIRAMQDMADMGQSKIMNLA--SNRKATPARSGESKSN  342

Query  266  IEDVSGRISADVRNNALLIRDDDKRHDEYSQLIAKIDVPQNLVEIDAVILDIDRTALNRL  325
             +    R+ ADVRNNA+LI DD  +++ Y QL+ ++D P NLVEIDAVILDIDR+ L+ L
Sbjct  343  SNR---RVVADVRNNAVLIYDDPEKRETYQQLVQQLDQPSNLVEIDAVILDIDRSQLSSL  399

Query  326  EANWQAtlggvt-ggsslmsgsgtlFVSDFKRFFADIQALEGEGTASIVANPSVLTLENQ  384
            E+ W A  G+V  G+S L +GS+TLF++DF RFFADIQALEG+G AS++A PSVLTLENQ
Sbjct  400  ESRWSARAGSVNFGSSLLTGGSSTLFINDFDRFFADIQALEGQGVASVIARPSVLTLENQ  459

Query  385  PAVIDFSQTAYITATGERVADIQPVTAGTSLQVTPRAVGNEGHSSIQLMIDIEDGHVQTN  444
            PAVIDFS+TAYIT+TGERVA++QPVTAGTSL+V PR+++ E  + +QL++DIEDG+++  
Sbjct  460  PAVIDFSRTAYITTTGERVANVQPVTAGTSLRVIPRTIAGEQPNRFQLIVDIEDGQLERT  519

Query  445  GDGQATGVKRGTVSTQALISENRALVLGGFHVEESADRDRRIPLLGDIPWLGQLFSSKRH  504
             D ++ +VKRGTVSTQA+I+ENR+LV+GGFHV+ES++R+ ++P+LG +P +G LF+SKRH
Sbjct  520  RDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKVPILGSLPVIGALFTSKRH  579

Query  505  EISQRQRLFILTPRLIGDQTDPTRYVTADNRQQLSDAMGRVERRHSSVNQHDVVENALRD  564
            E+S+R+RLFILTPRL+GDQ DP+RY++ +NR QL  A++      +  +++D V +++ +
Sbjct  580  EVSRRERLFILTPRLVGDQLDPSRYIARENRPQLDRALALSGSPSTRQQKRDRVSKTFSE  639

Query  565  LAEGQSPAGFQPQTSGTRLSEVCRSTPALLFESTRGQWYSSSTNGVQLSVGVVRNTSSKP  624
            LA+G+ P++++  +SG  L ++CR   +L ++++RGQW+S+ T   +++VGVVRN S+++
Sbjct  640  LANGRLPPDIKESSSGVALKDLCRVDHGLSIDASRGQWFSGDT--FDITVGVVRNDSARA  697

Query  625  LRFDEANCASKRTLAVAVWPHSALAPGESAEVYLA  659
              F  A+CA+ RTLAV++ P + L PG+S+EV++A
Sbjct  698  KAFSLASCAGARTLAVTMLPVTELQPGQSTEVFVA  732

7) hrcC in NC_013961


> AY597282|28|G28|51103173|AAT96315.1|Pseudomonas_viridiflava_RMX23.1a|-|28074..30335|hrcC|-|HrcC
Length=753

 Score =  573 bits (2162),  Expect = 1e-164, Method: Compositional matrix adjust.
 Identities = 334/635 (53%), Positives = 494/635 (78%), Gaps = 9/635 (1%)

Query  26   AQTPADWKEQSYAYSADRTPLSTVLQDFADGHSVDLHLGNVEDTEVTAKIRAENASAFLD  85
            A  P +W++ +YAY A +TPL+ VL DFA + +V+L+   + +  V AKIRA NA  FLD
Sbjct  106  AGVPEEWRQSAYAYEASQTPLTKVLSDFASSYGVGLDSRGITGV-VDAKIRAGNAQEFLD  164

Query  86   RLALEHHFQWFVYNNTLYVSPQDEQSSERLEISPDAAPDIKQALSGIGLLDPRFGWGELP  145
            RLALEH+FQWF+YN  LYVSPQ  Q S+RLE+S+DAAPD+KQAL++IGLLD RFGWGELP
Sbjct  165  RLALEHQFQWFLYNGKLYVSPQSGQVSQRLEVSADAAPDLKQALTDIGLLDKRFGWGELP  224

Query  146  DDGVVLVTGPPQYLELVKRFSEQREKKEDRRKVMTFPLRYASVADRTIHYRDQTVVIPGV  205
            D+GVVLV+GP++Y+EL++ FS ++ K +D+++VM F+LRYA+VADR I+YR+Q++ IPGV
Sbjct  225  DEGVVLVSGPARYVELIRGFSKEKVKAQDKHQVMMFSLRYAAVADREIQYREQSITIPGV  284

Query  206  ATMLNELMNGKRAAPASASGIDSTPGGPDTNSMMQNTQTLLSRLSSRNKTSNRAGGRDNE  265
            AT+L+ L+++++ +P +     +  +  D   M Q+    L+  S+R+ T+ R+G   ++
Sbjct  285  ATLLDGLLESQHRPPLPQDPAANIRAMQDMADMGQSKIMNLA--SNRKATPARSGESKSN  342

Query  266  IEDVSGRISADVRNNALLIRDDDKRHDEYSQLIAKIDVPQNLVEIDAVILDIDRTALNRL  325
             +    R+ ADVRNNA+LI DD  +++ Y QL+ ++D P NLVEIDAVILDIDR+ L+ L
Sbjct  343  SNR---RVVADVRNNAVLIYDDPEKRETYQQLVQQLDQPSNLVEIDAVILDIDRSQLSSL  399

Query  326  EANWQAtlggvt-ggsslmsgsgtlFVSDFKRFFADIQALEGEGTASIVANPSVLTLENQ  384
            E+ W A  G+V  G+S L +GS+TLF++DF RFFADIQALEG+G AS++A PSVLTLENQ
Sbjct  400  ESRWSARAGSVNFGSSLLTGGSSTLFINDFDRFFADIQALEGQGVASVIARPSVLTLENQ  459

Query  385  PAVIDFSQTAYITATGERVADIQPVTAGTSLQVTPRAVGNEGHSSIQLMIDIEDGHVQTN  444
            PAVIDFS+TAYIT+TGERVA++QPVTAGTSL+V PR+++ E  + +QL++DIEDG+++  
Sbjct  460  PAVIDFSRTAYITTTGERVANVQPVTAGTSLRVIPRTIAGEQPNRFQLIVDIEDGQLERT  519

Query  445  GDGQATGVKRGTVSTQALISENRALVLGGFHVEESADRDRRIPLLGDIPWLGQLFSSKRH  504
             D ++ +VKRGTVSTQA+I+ENR+LV+GGFHV+ES++R+ ++P+LG +P +G LF+SKRH
Sbjct  520  RDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKVPILGSLPVIGALFTSKRH  579

Query  505  EISQRQRLFILTPRLIGDQTDPTRYVTADNRQQLSDAMGRVERRHSSVNQHDVVENALRD  564
            E+S+R+RLFILTPRL+GDQ DP+RY++ +NR QL  A++      +  +++D V +++ +
Sbjct  580  EVSRRERLFILTPRLVGDQLDPSRYIARENRPQLDRALALSGSPSTRQQKRDRVSKTFSE  639

Query  565  LAEGQSPAGFQPQTSGTRLSEVCRSTPALLFESTRGQWYSSSTNGVQLSVGVVRNTSSKP  624
            LA+G+ P++++  +SG  L ++CR   +L ++++RGQW+S+ T   +++VGVVRN S+++
Sbjct  640  LANGRLPPDIKESSSGVALKDLCRVDHGLSIDASRGQWFSGDT--FDITVGVVRNDSARA  697

Query  625  LRFDEANCASKRTLAVAVWPHSALAPGESAEVYLA  659
              F  A+CA+ RTLAV++ P + L PG+S+EV++A
Sbjct  698  KAFSLASCAGARTLAVTMLPVTELQPGQSTEVFVA  732

8) hrcC in NC_017445


> AY597282|28|G28|51103173|AAT96315.1|Pseudomonas_viridiflava_RMX23.1a|-|28074..30335|hrcC|-|HrcC
Length=753

 Score =  568 bits (2145),  Expect = 3e-163, Method: Compositional matrix adjust.
 Identities = 335/636 (53%), Positives = 499/636 (79%), Gaps = 9/636 (1%)

Query  26   AQTPADWKEQSYAYSADRTPLSTVLQDFADGHSVDLQLGNVEDVEVTAKIRADNASAFLD  85
            A  P +W++ +YAY A +TPL+ VL DFA + +V+L+   + +V V AKIRA+NA  FLD
Sbjct  106  AGVPEEWRQSAYAYEASQTPLTKVLSDFASSYGVGLDSRGITGV-VDAKIRAGNAQEFLD  164

Query  86   RLALEHHFQWFVYNNTLYVSPQDEQSSERLEISPDAAPDIKQALSGIGLLDPRFGWGELP  145
            RLALEH+FQWF+YN  LYVSPQ  Q S+RLE+S+DAAPD+KQAL++IGLLD RFGWGELP
Sbjct  165  RLALEHQFQWFLYNGKLYVSPQSGQVSQRLEVSADAAPDLKQALTDIGLLDKRFGWGELP  224

Query  146  DDGVVLVTGPPQYLELVKRFSEQREKKEDRRKVMTFPLRYASVADRTIHYRDQTVVIPGV  205
            D+GVVLV+GP++Y+EL++ FS ++ K +D+++VM F+LRYA+VADR I+YR+Q++ IPGV
Sbjct  225  DEGVVLVSGPARYVELIRGFSKEKVKAQDKHQVMMFSLRYAAVADREIQYREQSITIPGV  284

Query  206  ATMLNELMNGKRaapasasgsdsapggpdTTSMMQNTQTLLSRLSSRNKSANKAGGRDSD  265
            AT+L+ L+++++ +P +   + +  +  D + M Q+    L+  S+R+ ++ ++G   S+
Sbjct  285  ATLLDGLLESQHRPPLPQDPAANIRAMQDMADMGQSKIMNLA--SNRKATPARSGESKSN  342

Query  266  IDDVSGRISADVRNNALLIRDDDKRRDEYSQLIAKIDVPQNLVEIDAVILDIDRTALNRL  325
             +    R+ ADVRNNA+LI DD  +R+ Y QL+ ++D P NLVEIDAVILDIDR+ L+ L
Sbjct  343  SNR---RVVADVRNNAVLIYDDPEKRETYQQLVQQLDQPSNLVEIDAVILDIDRSQLSSL  399

Query  326  EANWQAtlggvt-ggsslmsgsgtlFVSDFKRFFADIQALEGEGTASIVANPSVLTLENQ  384
            E+ W A  G+V  G+S L +GS+TLF++DF RFFADIQALEG+G AS++A PSVLTLENQ
Sbjct  400  ESRWSARAGSVNFGSSLLTGGSSTLFINDFDRFFADIQALEGQGVASVIARPSVLTLENQ  459

Query  385  PAVIDFSQTAYITATGERVADIQPVTAGTSLQVTPRAVGNQGHSSIQLMIDIEDGHVQTN  444
            PAVIDFS+TAYIT+TGERVA++QPVTAGTSL+V PR+++ +  + +QL++DIEDG+++  
Sbjct  460  PAVIDFSRTAYITTTGERVANVQPVTAGTSLRVIPRTIAGEQPNRFQLIVDIEDGQLERT  519

Query  445  GDGQATGVKRGTVSTQALISENRALVLGGFHVEESADRDRRIPLLGDIPWIGQLFSSRRH  504
             D ++ +VKRGTVSTQA+I+ENR+LV+GGFHV+ES++R+ ++P+LG +P IG LF+S+RH
Sbjct  520  RDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKVPILGSLPVIGALFTSKRH  579

Query  505  EISQRQRLFILTPRLIGDQTDPTRYVTADNRQQLSDAMGRVERRHSNVNQHDVVENALRD  564
            E+S+R+RLFILTPRL+GDQ DP+RY++ +NR QL  A++      +  +++D V +++ +
Sbjct  580  EVSRRERLFILTPRLVGDQLDPSRYIARENRPQLDRALALSGSPSTRQQKRDRVSKTFSE  639

Query  565  LAEGQSPAGFQVQTSGTRLSEVCRSTPSLLFESTRGQWYSSSTNGVQLSVGVVRNTSSKP  624
            LA+G+ P++++  +SG  L ++CR   +L ++++RGQW+S+ T   +++VGVVRN S+++
Sbjct  640  LANGRLPPDIKESSSGVALKDLCRVDHGLSIDASRGQWFSGDT--FDITVGVVRNDSARA  697

Query  625  LRFDEANCASKRTLAVAVWPHSALAPGESAEVYLAT  660
              F  A+CA+ RTLAV++ P + L PG+S+EV++AT
Sbjct  698  KAFSLASCAGARTLAVTMLPVTELQPGQSTEVFVAT  733

9) Ser39006_2900 in NC_022268


> AY597282|28|G28|51103173|AAT96315.1|Pseudomonas_viridiflava_RMX23.1a|-|28074..30335|hrcC|-|HrcC
Length=753

 Score =  567 bits (2141),  Expect = 7e-163, Method: Compositional matrix adjust.
 Identities = 354/687 (52%), Positives = 508/687 (74%), Gaps = 32/687 (4%)

Query  1    MRRNTLYTILFTLYRW----F--C-----WSLVFLGMVPMAHSSTPTEWRKGAYAYSAEQ  49
             R++ L    F L  W    F  C     W  V+     +  ++ P EWR++AYAY A Q
Sbjct  64   KRQHRLQNARFVLCLWGIRMFKQCLKRLFWISVLCVQAEVVTAGVPEEWRQSAYAYEASQ  123

Query  50   TPLSEVLQDFANSHGVDLVLGHIPDVSVDAKIRADNPVAFLDRLALEYRFQWFVYNTTLY  109
            TPL+ VL DFA+S GV+L    I +V VDAKIRA+N+  FLDRLALE +FQWF+YN  LY
Sbjct  124  TPLTKVLSDFASSYGVGLDSRGITGV-VDAKIRAGNAQEFLDRLALEHQFQWFLYNGKLY  182

Query  110  VSAKDEQTSVRLEISPEAAPDLKQALTGIGLLDSRFGWGELPDDGVVLVTGPAEYVNLIR  169
            VS++  Q S RLE+S++AAPDLKQALT+IGLLD RFGWGELPD+GVVLV+GPA YV+LIR
Sbjct  183  VSPQSGQVSQRLEVSADAAPDLKQALTDIGLLDKRFGWGELPDEGVVLVSGPARYVELIR  242

Query  170  RFSQQRETKDDRRKVMLFPLRYASVSDRTIQYRGQNLIIPGVATILSELMDGNRNLPaga  229
             FS+++   +D+++VM+F+LRYA+V+DR IQYR Q++ IPGVAT+L  L+++++  P   
Sbjct  243  GFSKEKVKAQDKHQVMMFSLRYAAVADREIQYREQSITIPGVATLLDGLLESQHRPPLPQ  302

Query  230  aassngnaenaaggPMAIADSGMRAIQNSASSMLVRLAT--RGSAGREAGSRQRDAQLNG  287
             +              A    +M+ + + + S ++ LA+  +++++R + S+    +   
Sbjct  303  DP--------------AANIRAMQDMADMGQSKIMNLASNRKATPARSGESKSNSNR---  345

Query  288  KVSADVRNNALLIRDDEKRRDEYQQLIDKIDVPQKLVNIDAVILDIDRTALSRLEANWQG  347
            +V ADVRNNA+LI DD  +R+ YQQL++++D P +LV+IDAVILDIDR+ LS LE+ W +
Sbjct  346  RVVADVRNNAVLIYDDPEKRETYQQLVQQLDQPSNLVEIDAVILDIDRSQLSSLESRWSA  405

Query  348  KLgavt-ggvsmmsgsstLFISDFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDF  406
            + G+V  G+  + +GSSTLFI+DF RFFADIQALEG+G AS++A PSVLTLENQPAVIDF
Sbjct  406  RAGSVNFGSSLLTGGSSTLFINDFDRFFADIQALEGQGVASVIARPSVLTLENQPAVIDF  465

Query  407  SRTAFITATGERVANIQPITAGTSLQVTPRVVGQGRQSSIQLVIDIEDGQVETNTDGNAS  466
            SRTA+IT+TGERVAN+QP+TAGTSL+V PR ++  + + +QL++DIEDGQ+E   D +++
Sbjct  466  SRTAYITTTGERVANVQPVTAGTSLRVIPRTIAGEQPNRFQLIVDIEDGQLERTRDNDTP  525

Query  467  GVKRGTVSTQALIGENRSLVLGGFHVEESGDRDKRIPLLGDIPWIGKLFTSRQHEISRRE  526
            +VKRGTVSTQA+IGENRSLV+GGFHV+ESG+R+ ++P+LG +P IG LFTS++HE+SRRE
Sbjct  526  DVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKVPILGSLPVIGALFTSKRHEVSRRE  585

Query  527  RLFILTPHLIGDQTDPSRYVSADNRRQLNDMIGRVSQRNSKTDFYNVVENALRDLANGQT  586
            RLFILTP+L+GDQ DPSRY++ +NR QL+  ++  +  +++ +  + V +++ +LANG+ 
Sbjct  586  RLFILTPRLVGDQLDPSRYIARENRPQLDRALALSGSPSTRQQKRDRVSKTFSELANGRL  645

Query  587  PAGFTTEHTGTRLSEICRPNMSLLYEGSRNQWYSTSAVNLTVGVVKNTGNRPQRFDEASC  646
            P+++    +G  L ++CR + +L  ++SR QW+S  + ++TVGVV+N + R++ F  ASC
Sbjct  646  PPDIKESSSGVALKDLCRVDHGLSIDASRGQWFSGDTFDITVGVVRNDSARAKAFSLASC  705

Query  647  SGNRTLAVAAWPKTMLAPGESTEVYLA  673
            +G RTLAV+  P T L PG+STEV++A
Sbjct  706  AGARTLAVTMLPVTELQPGQSTEVFVA  732

10) hrcC in NC_010694


> AY597282|28|G28|51103173|AAT96315.1|Pseudomonas_viridiflava_RMX23.1a|-|28074..30335|hrcC|-|HrcC
Length=753

 Score =  566 bits (2138),  Expect = 1e-162, Method: Compositional matrix adjust.
 Identities = 338/635 (54%), Positives = 497/635 (79%), Gaps = 9/635 (1%)

Query  26   AQTPADWKEQSYAYSADRTPLSTVLQDFADGHSVDLQLGNVEEVEVTAKIRADNASAFLD  85
            A  P +W++ +YAY A +TPL+ VL DFA + +V+L+   +  V V AKIRA+NA  FLD
Sbjct  106  AGVPEEWRQSAYAYEASQTPLTKVLSDFASSYGVGLDSRGITGV-VDAKIRAGNAQEFLD  164

Query  86   RLALEHHFQWFVYNNTLYVSPQDEQSSERLEISPDAAPDIKQALSGIGLLDPRFGWGELP  145
            RLALEH+FQWF+YN  LYVSPQ  Q S+RLE+S+DAAPD+KQAL++IGLLD RFGWGELP
Sbjct  165  RLALEHQFQWFLYNGKLYVSPQSGQVSQRLEVSADAAPDLKQALTDIGLLDKRFGWGELP  224

Query  146  DDGVVLVTGPPQYLELIKRFSEQREKKEDRRKVMTFPLRYASVADRTIRYRDQTVVIPGV  205
            D+GVVLV+GP++Y+ELI+ FS ++ K +D+++VM F+LRYA+VADR I+YR+Q++ IPGV
Sbjct  225  DEGVVLVSGPARYVELIRGFSKEKVKAQDKHQVMMFSLRYAAVADREIQYREQSITIPGV  284

Query  206  ATMLNELMNGKRpapasasgsdgtagapdTGSMMQNTQSLLSRLSSRNKTPGRAGDRDSG  265
            AT+L+ L+++++ +P +   +    +  D + M Q+    L+  S+R+ TP+R+G+  S 
Sbjct  285  ATLLDGLLESQHRPPLPQDPAANIRAMQDMADMGQSKIMNLA--SNRKATPARSGESKSN  342

Query  266  IDDLSGRISADVRNNALLIRDDDKRRDEYSQLIGKIDVPQNLVEIDAVILDIDRTALNRL  325
             +    R+ ADVRNNA+LI DD  +R+ Y QL+ ++D P NLVEIDAVILDIDR+ L+ L
Sbjct  343  SNR---RVVADVRNNAVLIYDDPEKRETYQQLVQQLDQPSNLVEIDAVILDIDRSQLSSL  399

Query  326  EANWQAtlggvt-ggsslmsgsgtlFVSDFKRFFADIQALEGEGTASIVANPSVLTLENQ  384
            E+ W A  G+V  G+S L +GS+TLF++DF RFFADIQALEG+G AS++A PSVLTLENQ
Sbjct  400  ESRWSARAGSVNFGSSLLTGGSSTLFINDFDRFFADIQALEGQGVASVIARPSVLTLENQ  459

Query  385  PAVIDFSQTAYITATGERVADIQPVTAGTSLQVTPRAVGYEGHSSIQLMIDIEDGHVQTN  444
            PAVIDFS+TAYIT+TGERVA++QPVTAGTSL+V PR+++ E  + +QL++DIEDG+++  
Sbjct  460  PAVIDFSRTAYITTTGERVANVQPVTAGTSLRVIPRTIAGEQPNRFQLIVDIEDGQLERT  519

Query  445  GDGQATGVKRGTVSTQALIGENRALVLGGFHVEESGDRDRRIPLLGDIPWIGKLFTSTRH  504
             D ++ +VKRGTVSTQA+IGENR+LV+GGFHV+ESG+R+ ++P+LG +P IG LFTS RH
Sbjct  520  RDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKVPILGSLPVIGALFTSKRH  579

Query  505  EISQRQRLFILTPRLIGDQTDPTRYVTADNRQQLSDAMGRVERRHSNVNQHDVVENALRD  564
            E+S+R+RLFILTPRL+GDQ DP+RY++ +NR QL  A++      +  +++D V +++ +
Sbjct  580  EVSRRERLFILTPRLVGDQLDPSRYIARENRPQLDRALALSGSPSTRQQKRDRVSKTFSE  639

Query  565  LAEGQSPAGFQAQTSGTRINEVCRSTPSLLFESTRGQWYSSSNNGVQLSVGVVRNTGSKP  624
            LA+G+ P++++  +SG  ++++CR   +L ++++RGQW+S+  +  +++VGVVRN ++++
Sbjct  640  LANGRLPPDIKESSSGVALKDLCRVDHGLSIDASRGQWFSG--DTFDITVGVVRNDSARA  697

Query  625  LRFDEANCGSKRTLAVAVWPQSALAPGQSAEIYLA  659
              F  A+C++ RTLAV++ P + L PGQS+E+++A
Sbjct  698  KAFSLASCAGARTLAVTMLPVTELQPGQSTEVFVA  732

11) hrcC in NC_017390


> AY597282|28|G28|51103173|AAT96315.1|Pseudomonas_viridiflava_RMX23.1a|-|28074..30335|hrcC|-|HrcC
Length=753

 Score =  565 bits (2134),  Expect = 2e-162, Method: Compositional matrix adjust.
 Identities = 334/636 (53%), Positives = 498/636 (79%), Gaps = 9/636 (1%)

Query  26   AQTPADWKEQSYAYSADRTPLSTVLQDFADGHSVDLQLGNVEDAEVTAKIRADNASAFLD  85
            A  P +W++ +YAY A +TPL+ VL DFA + +V+L+   + +  V AKIRA+NA  FLD
Sbjct  106  AGVPEEWRQSAYAYEASQTPLTKVLSDFASSYGVGLDSRGITGV-VDAKIRAGNAQEFLD  164

Query  86   RLALEHHFQWFVYNNTLYVSPQDEQSSERLEISPDAAPDIKQALSGIGLLDPRFGWGELP  145
            RLALEH+FQWF+YN  LYVSPQ  Q S+RLE+S+DAAPD+KQAL++IGLLD RFGWGELP
Sbjct  165  RLALEHQFQWFLYNGKLYVSPQSGQVSQRLEVSADAAPDLKQALTDIGLLDKRFGWGELP  224

Query  146  DDGVVLVTGPPQYLELVKRFSEQREKKEDRRKVMTFPLRYASVADRTIHYRDQTVVIPGV  205
            D+GVVLV+GP++Y+EL++ FS ++ K +D+++VM F+LRYA+VADR I+YR+Q++ IPGV
Sbjct  225  DEGVVLVSGPARYVELIRGFSKEKVKAQDKHQVMMFSLRYAAVADREIQYREQSITIPGV  284

Query  206  ATMLNELMNGKRaapasasgsdsapggpdTTSMMQNTQTLLSRLSSRNKSANKAGGRDSD  265
            AT+L+ L+++++ +P +   + +  +  D + M Q+    L+  S+R+ ++ ++G   S+
Sbjct  285  ATLLDGLLESQHRPPLPQDPAANIRAMQDMADMGQSKIMNLA--SNRKATPARSGESKSN  342

Query  266  IDDVSGRISADVRNNALLIRDDDKRRDEYSQLIAKIDVPQNLVEIDAVILDIDRTALNRL  325
             +    R+ ADVRNNA+LI DD  +R+ Y QL+ ++D P NLVEIDAVILDIDR+ L+ L
Sbjct  343  SNR---RVVADVRNNAVLIYDDPEKRETYQQLVQQLDQPSNLVEIDAVILDIDRSQLSSL  399

Query  326  EANWQAtlggvt-ggsslmsgsgtlFVSDFKRFFADIQALEGEGTASIVANPSVLTLENQ  384
            E+ W A  G+V  G+S L +GS+TLF++DF RFFADIQALEG+G AS++A PSVLTLENQ
Sbjct  400  ESRWSARAGSVNFGSSLLTGGSSTLFINDFDRFFADIQALEGQGVASVIARPSVLTLENQ  459

Query  385  PAVIDFSQTAYITATGERVADIQPVTAGTSLQVTPRAVGNQGHSSIQLMIDIEDGHVQTN  444
            PAVIDFS+TAYIT+TGERVA++QPVTAGTSL+V PR+++ +  + +QL++DIEDG+++  
Sbjct  460  PAVIDFSRTAYITTTGERVANVQPVTAGTSLRVIPRTIAGEQPNRFQLIVDIEDGQLERT  519

Query  445  GDGQATGVKRGTVSTQALISENRALVLGGFHVEESADRDRRIPLLGDIPWIGQLFSSRRH  504
             D ++ +VKRGTVSTQA+I+ENR+LV+GGFHV+ES++R+ ++P+LG +P IG LF+S+RH
Sbjct  520  RDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKVPILGSLPVIGALFTSKRH  579

Query  505  EISQRQRLFILTPRLIGDQTDPTRYVTADNRQQLSDAMGRVERRHSNVNQHDVVENALRD  564
            E+S+R+RLFILTPRL+GDQ DP+RY++ +NR QL  A++      +  +++D V +++ +
Sbjct  580  EVSRRERLFILTPRLVGDQLDPSRYIARENRPQLDRALALSGSPSTRQQKRDRVSKTFSE  639

Query  565  LAEGQSPAGFQVQTSGTRLSEVCRSTPSLLFESTRGQWYSSSTNGVHLSVGVVRNISSKP  624
            LA+G+ P++++  +SG  L ++CR   +L ++++RGQW+S+ T   +++VGVVRN S+++
Sbjct  640  LANGRLPPDIKESSSGVALKDLCRVDHGLSIDASRGQWFSGDT--FDITVGVVRNDSARA  697

Query  625  LRFDEANCASKRTLAVAVWPHSALAPGESAEVYLAT  660
              F  A+CA+ RTLAV++ P + L PG+S+EV++AT
Sbjct  698  KAFSLASCAGARTLAVTMLPVTELQPGQSTEVFVAT  733

12) hrcC in NC_012214


> AY597282|28|G28|51103173|AAT96315.1|Pseudomonas_viridiflava_RMX23.1a|-|28074..30335|hrcC|-|HrcC
Length=753

 Score =  565 bits (2134),  Expect = 2e-162, Method: Compositional matrix adjust.
 Identities = 334/636 (53%), Positives = 498/636 (79%), Gaps = 9/636 (1%)

Query  26   AQTPADWKEQSYAYSADRTPLSTVLQDFADGHSVDLQLGNVEDAEVTAKIRADNASAFLD  85
            A  P +W++ +YAY A +TPL+ VL DFA + +V+L+   + +  V AKIRA+NA  FLD
Sbjct  106  AGVPEEWRQSAYAYEASQTPLTKVLSDFASSYGVGLDSRGITGV-VDAKIRAGNAQEFLD  164

Query  86   RLALEHHFQWFVYNNTLYVSPQDEQSSERLEISPDAAPDIKQALSGIGLLDPRFGWGELP  145
            RLALEH+FQWF+YN  LYVSPQ  Q S+RLE+S+DAAPD+KQAL++IGLLD RFGWGELP
Sbjct  165  RLALEHQFQWFLYNGKLYVSPQSGQVSQRLEVSADAAPDLKQALTDIGLLDKRFGWGELP  224

Query  146  DDGVVLVTGPPQYLELVKRFSEQREKKEDRRKVMTFPLRYASVADRTIHYRDQTVVIPGV  205
            D+GVVLV+GP++Y+EL++ FS ++ K +D+++VM F+LRYA+VADR I+YR+Q++ IPGV
Sbjct  225  DEGVVLVSGPARYVELIRGFSKEKVKAQDKHQVMMFSLRYAAVADREIQYREQSITIPGV  284

Query  206  ATMLNELMNGKRaapasasgsdsapggpdTTSMMQNTQTLLSRLSSRNKSANKAGGRDSD  265
            AT+L+ L+++++ +P +   + +  +  D + M Q+    L+  S+R+ ++ ++G   S+
Sbjct  285  ATLLDGLLESQHRPPLPQDPAANIRAMQDMADMGQSKIMNLA--SNRKATPARSGESKSN  342

Query  266  IDDVSGRISADVRNNALLIRDDDKRRDEYSQLIAKIDVPQNLVEIDAVILDIDRTALNRL  325
             +    R+ ADVRNNA+LI DD  +R+ Y QL+ ++D P NLVEIDAVILDIDR+ L+ L
Sbjct  343  SNR---RVVADVRNNAVLIYDDPEKRETYQQLVQQLDQPSNLVEIDAVILDIDRSQLSSL  399

Query  326  EANWQAtlggvt-ggsslmsgsgtlFVSDFKRFFADIQALEGEGTASIVANPSVLTLENQ  384
            E+ W A  G+V  G+S L +GS+TLF++DF RFFADIQALEG+G AS++A PSVLTLENQ
Sbjct  400  ESRWSARAGSVNFGSSLLTGGSSTLFINDFDRFFADIQALEGQGVASVIARPSVLTLENQ  459

Query  385  PAVIDFSQTAYITATGERVADIQPVTAGTSLQVTPRAVGNQGHSSIQLMIDIEDGHVQTN  444
            PAVIDFS+TAYIT+TGERVA++QPVTAGTSL+V PR+++ +  + +QL++DIEDG+++  
Sbjct  460  PAVIDFSRTAYITTTGERVANVQPVTAGTSLRVIPRTIAGEQPNRFQLIVDIEDGQLERT  519

Query  445  GDGQATGVKRGTVSTQALISENRALVLGGFHVEESADRDRRIPLLGDIPWIGQLFSSRRH  504
             D ++ +VKRGTVSTQA+I+ENR+LV+GGFHV+ES++R+ ++P+LG +P IG LF+S+RH
Sbjct  520  RDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKVPILGSLPVIGALFTSKRH  579

Query  505  EISQRQRLFILTPRLIGDQTDPTRYVTADNRQQLSDAMGRVERRHSNVNQHDVVENALRD  564
            E+S+R+RLFILTPRL+GDQ DP+RY++ +NR QL  A++      +  +++D V +++ +
Sbjct  580  EVSRRERLFILTPRLVGDQLDPSRYIARENRPQLDRALALSGSPSTRQQKRDRVSKTFSE  639

Query  565  LAEGQSPAGFQVQTSGTRLSEVCRSTPSLLFESTRGQWYSSSTNGVHLSVGVVRNISSKP  624
            LA+G+ P++++  +SG  L ++CR   +L ++++RGQW+S+ T   +++VGVVRN S+++
Sbjct  640  LANGRLPPDIKESSSGVALKDLCRVDHGLSIDASRGQWFSGDT--FDITVGVVRNDSARA  697

Query  625  LRFDEANCASKRTLAVAVWPHSALAPGESAEVYLAT  660
              F  A+CA+ RTLAV++ P + L PG+S+EV++AT
Sbjct  698  KAFSLASCAGARTLAVTMLPVTELQPGQSTEVFVAT  733

13) D781_3931 in NC_020064


> AY597282|28|G28|51103173|AAT96315.1|Pseudomonas_viridiflava_RMX23.1a|-|28074..30335|hrcC|-|HrcC
Length=753

 Score =  562 bits (2121),  Expect = 2e-161, Method: Compositional matrix adjust.
 Identities = 324/643 (51%), Positives = 485/643 (76%), Gaps = 10/643 (1%)

Query  22   CAGIGTVQAATPGEWKNGAYAYSADNTPLSIILEDFADSFGVTLYDSSLPEANVTGKLRS  81
            C     V A+ P EW+++AYAY A +TPL+ +L DFA S+GV L   ++    V +K+R+
Sbjct  98   CVQAEVVTAGVPEEWRQSAYAYEASQTPLTKVLSDFASSYGVGLDSRGITGV-VDAKIRA  156

Query  82   GSPEAFLNRLALEYRFQWFVYNDTLYVSAQSAQVSRRLEISPDAAPDIKQALKGVGLLDP  141
            G+++ FL+RLALE +FQWF+YN+ LYVS+QS+QVS+RLE+S+DAAPD+KQAL ++GLLD 
Sbjct  157  GNAQEFLDRLALEHQFQWFLYNGKLYVSPQSGQVSQRLEVSADAAPDLKQALTDIGLLDK  216

Query  142  RFGWGELPDEGVVLVTGPPEYVAMIADFTKKSEKPKDDNKEMMSFPLKYASVADRNIKYR  201
            RFGWGELPDEGVVLV+GP+ YV +I +F+K   K++D ++ MM F+L+YA+VADR+I+YR
Sbjct  217  RFGWGELPDEGVVLVSGPARYVELIRGFSKEKVKAQDKHQVMM-FSLRYAAVADREIQYR  275

Query  202  DQTLLVPGVATILNELLGQssspsasgmnssQGGESEMDQMRAQSQGILNQLVG-RGTSH  260
            +Q++ +PGVAT+L+ LL     P+ +   +  +    M++M   +Q+ + +L + R ++ 
Sbjct  276  EQSITIPGVATLLDGLLESQHRPPLPQDPA--ANIRAMQDMADMGQSKIMNLASNRKATP  333

Query  261  GRAGDKNPLGNLAGKVSADVRNNALLVRDKPEYRSAYQSLVSMIDVPQKLIEIDALIVDI  320
            +R+G+ ++ +N   +V ADVRNNA+L+ D PE R +YQ LV  +D P +L+EIDA+I+DI
Sbjct  334  ARSGESKSNSN--RRVVADVRNNAVLIYDDPEKRETYQQLVQQLDQPSNLVEIDAVILDI  391

Query  321  DRSEMARLSSSWAGQFGNVTGGSTLLSG-PSTLFVTDFRRFFADIQALEGEGTASIIANP  379
            DRS+++ L S W+++ G+V  GS+LL+G +STLF+ DF RFFADIQALEG+G AS+IA P
Sbjct  392  DRSQLSSLESRWSARAGSVNFGSSLLTGGSSTLFINDFDRFFADIQALEGQGVASVIARP  451

Query  380  SIMTLENQPAVIDFSDTAFVRAIGERVADIQAVTAGTSLRVTPRAIGGKSSATSSVQLIV  439
            S++TLENQPAVIDFS TA++ + GERVA++Q+VTAGTSLRV PR+I+G  +  +  QLIV
Sbjct  452  SVLTLENQPAVIDFSRTAYITTTGERVANVQPVTAGTSLRVIPRTIAGEQP--NRFQLIV  509

Query  440  DVEDGKLNKNDDGDAEGTRNGAISTQALVQAKRSLVMGGFHTKESGDHERRIPILGSIPL  499
            D+EDG+L++  D D+ + + G++STQA++  +RSLV+GGFH  ESG+++ ++PILGS+P+
Sbjct  510  DIEDGQLERTRDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKVPILGSLPV  569

Query  500  IGKLFTTSQHETSQRERLFIITPHLVGDQVDPSRYIASENRDQLNSAMGEINRRHKYTDM  559
            IG LFT+ +HE S+RERLFI+TP+LVGDQ+DPSRYIA ENR QL+ A++         + 
Sbjct  570  IGALFTSKRHEVSRRERLFILTPRLVGDQLDPSRYIARENRPQLDRALALSGSPSTRQQK  629

Query  560  KGMLESAMRDLAENRQPSGMTAGGSGQTLSTLCRIPSGFSNDAQRHQWYGNRSVQIAVGV  619
            ++ +  +  +LA+ R P+++  ++SG +L  LCR+  G+S DA R QW++  + +I+VGV
Sbjct  630  RDRVSKTFSELANGRLPPDIKESSSGVALKDLCRVDHGLSIDASRGQWFSGDTFDITVGV  689

Query  620  ITNTSNVTRRFDEAACRSDRTLAVAAWPHSQLRPGESVEVYVA  662
            + N S  ++ F  A+C + RTLAV+  P ++L+PG+S EV+VA
Sbjct  690  VRNDSARAKAFSLASCAGARTLAVTMLPVTELQPGQSTEVFVA  732

14) PSEBR_a5375 in NC_015379


> AY597282|28|G28|51103173|AAT96315.1|Pseudomonas_viridiflava_RMX23.1a|-|28074..30335|hrcC|-|HrcC
Length=753

 Score =  541 bits (2040),  Expect = 6e-155, Method: Compositional matrix adjust.
 Identities = 334/646 (52%), Positives = 486/646 (76%), Gaps = 17/646 (2%)

Query  49   AAVPTDWKNTPYAYDAQSTPLAKVLGDFANTFAVQLVIDGTVKGTVDGRMRAESPQAFLD  108
            A+VP +W++++YAY+A  TPL+KVL+DFA++++V L   G + G VD+++RA ++Q FLD
Sbjct  106  AGVPEEWRQSAYAYEASQTPLTKVLSDFASSYGVGLDSRG-ITGVVDAKIRAGNAQEFLD  164

Query  109  RLGLENRFQWFMYGNTLYVSPLQNQDSTRLEVSADAVPDMKQALTDIGLLDPRFGWGELP  168
            RL+LE++FQWF+Y   LYVSP   Q S RLEVSADA PD+KQALTDIGLLD RFGWGELP
Sbjct  165  RLALEHQFQWFLYNGKLYVSPQSGQVSQRLEVSADAAPDLKQALTDIGLLDKRFGWGELP  224

Query  169  DEGVVLVSGPERYVRLVAQFAEVRKTPEEKQEVISFPLRYATAADRNVKYRGETLVIPGV  228
            DEGVVLVSGP RYV L+  F+  +  +++K++V+ F+LRYA+ ADR+++YR +++ IPGV
Sbjct  225  DEGVVLVSGPARYVELIRGFSKEKVKAQDKHQVMMFSLRYAAVADREIQYREQSITIPGV  284

Query  229  ASILKGLLESRSAVSGGMQTASPQASFQNMQNQQSMTMGNIEQLAMNGMGRPNTSRVPSG  288
            A++L GLLES+   +       P A+++ MQ+   M  ++I +LA N  + P      SG
Sbjct  285  ATLLDGLLESQHRPP---LPQDPAANIRAMQDMADMGQSKIMNLASNRKATPA----RSG  337

Query  289  ANSGAGGRGKIRVEADVRNNAVLIYDAPKRREIYTPLIRDVDVPRKLVEIDAIILDIDRT  348
             + + + R   RV ADVRNNAVLIYD P +RE Y  L++++D P +LVEIDA+ILDIDR+
Sbjct  338  ESKSNSNR---RVVADVRNNAVLIYDDPEKRETYQQLVQQLDQPSNLVEIDAVILDIDRS  394

Query  349  QLAELASNWNVESGDLIGGASMIRPGASSTVFIQDYGDFSAQLRALEGRGLASVVANPSV  408
            QL+ L S W+  +G +  G+S++  G+SST+FI+D++ F A+++ALEG+G+ASV+A PSV
Sbjct  395  QLSSLESRWSARAGSVNFGSSLL-TGGSSTLFINDFDRFFADIQALEGQGVASVIARPSV  453

Query  409  LTLENQPAVIDFSRTEYISAIGERVATVEPITAGTSLQVVPHAIETGGRNQIQMSLEIED  468
            LTLENQPAVIDFSRT YI++ GERVA V+P+TAGTSL+V+P++I     N++Q+ ++IED
Sbjct  454  LTLENQPAVIDFSRTAYITTTGERVANVQPVTAGTSLRVIPRTIAGEQPNRFQLIVDIED  513

Query  469  GRIEPSEVGQQTPSVRRGVVSTQAVMGESRSLVVGGFHTEETGDNLERVPWLGRIPLIGP  528
            G++E +  +++TP V+RG VSTQAV+GE+RSLV+GGFH +E+G+  ++VP LG +P+IG+
Sbjct  514  GQLERTR-DNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKVPILGSLPVIGA  572

Query  529  LLFssttretsrrerVFILTPRLIGDQVDPARYISALDREQVDSAMARLEERRNGTRPVG  588
             LF+S  +E SRRER+FILTPRL+GDQ+DP+RYI+  +R Q+D A+A L     +TR   
Sbjct  573  -LFTSKRHEVSRRERLFILTPRLVGDQLDPSRYIARENRPQLDRALA-LSG-SPSTRQQK  629

Query  589  RIEVSDVLAQLADGNIPATFKQAPSIPYSPDTLCALQPGLSLDAARAQWFAGPDYGIAVG  648
            R  VS  +++LA+G +P+ +K+++S   +   LC ++ GLS+DA+R+QWF+G  ++I+VG
Sbjct  630  RDRVSKTFSELANGRLPPDIKESSS-GVALKDLCRVDHGLSIDASRGQWFSGDTFDITVG  688

Query  649  VIRNDDQRRLRFDEASCGSRWTLATSAWPKVWLEPGEETEVFVVMK  694
            V+RND  R   F  ASC++ +TLA +  P   L+PG+ TEVFV  +
Sbjct  689  VVRNDSARAKAFSLASCAGARTLAVTMLPVTELQPGQSTEVFVATR  734

15) hrcC in NC_016830


> AY597282|28|G28|51103173|AAT96315.1|Pseudomonas_viridiflava_RMX23.1a|-|28074..30335|hrcC|-|HrcC
Length=753

 Score =  539 bits (2034),  Expect = 2e-154, Method: Compositional matrix adjust.
 Identities = 331/644 (52%), Positives = 485/644 (76%), Gaps = 17/644 (2%)

Query  51   IPTDWKNTPYAYDAQSTPLAKVLGDFANTFAVQLVIDGTVKGTVDGRMRAESPQAFLDRL  110
            +P +W++++YAY+A  TPL+KVL+DFA++++V L   G + G VD+++RA ++Q FLDRL
Sbjct  108  VPEEWRQSAYAYEASQTPLTKVLSDFASSYGVGLDSRG-ITGVVDAKIRAGNAQEFLDRL  166

Query  111  GLENRFQWFMYGNTLYVSPLQNQDSTRLEVSADAVPDMKQALTDIGLLDPRFGWGELPDE  170
            +LE++FQWF+Y   LYVSP   Q S RLEVSADA PD+KQALTDIGLLD RFGWGELPDE
Sbjct  167  ALEHQFQWFLYNGKLYVSPQSGQVSQRLEVSADAAPDLKQALTDIGLLDKRFGWGELPDE  226

Query  171  GVVLVSGPERYVRLVTQFAEARKTPEEKQEVISFPLRYATAADRNVKYRGETLVIPGVAS  230
            GVVLVSGP RYV L+  F+  +  +++K++V+ F+LRYA+ ADR+++YR +++ IPGVA+
Sbjct  227  GVVLVSGPARYVELIRGFSKEKVKAQDKHQVMMFSLRYAAVADREIQYREQSITIPGVAT  286

Query  231  ILKGLLESRSAVSGGMQTASPQASFQNMQTQQSTTMGNIEQLALNGMGRPNTSRVPSGAN  290
            +L GLLES+   +       P A+++ M  Q+ + MG+   + L +  ++  +R  SG +
Sbjct  287  LLDGLLESQHRPP---LPQDPAANIRAM--QDMADMGQSKIMNLASNRKATPAR--SGES  339

Query  291  SGAGARGKIRVEADVRNNAVLIYDAPKRREIYTPLIRDVDVPRKLVEIDAIILDIDRTQL  350
             + + R   RV ADVRNNAVLIYD P +RE Y  L++++D P +LVEIDA+ILDIDR+QL
Sbjct  340  KSNSNR---RVVADVRNNAVLIYDDPEKRETYQQLVQQLDQPSNLVEIDAVILDIDRSQL  396

Query  351  AELASNWNVESGDLIGGASMIRPGASSTVFIQDYGDFSAQLRALEGRGLASVVANPSVLT  410
            + L S W+  +G +  G+S++  G+SST+FI+D++ F A+++ALEG+G+ASV+A PSVLT
Sbjct  397  SSLESRWSARAGSVNFGSSLL-TGGSSTLFINDFDRFFADIQALEGQGVASVIARPSVLT  455

Query  411  LENQPAVIDFSRTEYISAIGERVATVEPITAGTSLQVVPHAIETGGRNQIQMSLDIEDGR  470
            LENQPAVIDFSRT YI++ GERVA V+P+TAGTSL+V+P++I     N++Q+ +DIEDG+
Sbjct  456  LENQPAVIDFSRTAYITTTGERVANVQPVTAGTSLRVIPRTIAGEQPNRFQLIVDIEDGQ  515

Query  471  IEPSEVGQQTPSVRRGVVSTQAVMGESRSLVVGGFHTEETGDNLERVPWLGRIPLIGPLL  530
            +E +  +++TP V+RG VSTQAV+GE+RSLV+GGFH +E+G+  ++VP LG +P+IG+ L
Sbjct  516  LERTR-DNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKVPILGSLPVIGA-L  573

Query  531  FssttretsrrerVFILTPRLIGDQVDPARYISALDREQVDSAMARLEERRNGTRPVGRI  590
            F+S  +E SRRER+FILTPRL+GDQ+DP+RYI+  +R Q+D A+A L     +TR   R 
Sbjct  574  FTSKRHEVSRRERLFILTPRLVGDQLDPSRYIARENRPQLDRALA-LSG-SPSTRQQKRD  631

Query  591  EVSDVLAQLADGNIPGTFKQAASIPYSPDTLCALQPGLSLDAARAQWFAGPDYGIAVGVV  650
             VS  +++LA+G +P  +K+++S   +   LC ++ GLS+DA+R+QWF+G  ++I+VGVV
Sbjct  632  RVSKTFSELANGRLPPDIKESSS-GVALKDLCRVDHGLSIDASRGQWFSGDTFDITVGVV  690

Query  651  RNDGQRRLRFDEASCGSRWALATSAWPKVWLEPGEETEVFVVMK  694
            RND+ R   F  ASC++ ++LA +  P   L+PG+ TEVFV  +
Sbjct  691  RNDSARAKAFSLASCAGARTLAVTMLPVTELQPGQSTEVFVATR  734

16) Marme_1063 in NC_015276


> AY597282|28|G28|51103173|AAT96315.1|Pseudomonas_viridiflava_RMX23.1a|-|28074..30335|hrcC|-|HrcC
Length=753

 Score =  499 bits (1881),  Expect = 3e-142, Method: Compositional matrix adjust.
 Identities = 307/673 (46%), Positives = 480/673 (72%), Gaps = 28/673 (4%)

Query  27   LFKACLLSL----MFCSYS---FAAFPPEWKKTAFAFEANQTSLRKTLASFCNTFGVSLS  79
            +FK CL  L    ++C  +    A+ P EW+++A+A+EA+QT+L K L+ F +++GV+L 
Sbjct  83   MFKQCLKRLFWISVLCVQAEVVTAGVPEEWRQSAYAYEASQTPLTKVLSDFASSYGVGLD  142

Query  80   ISNKLSGTVDGKLKSNSAQDFLNRLAIEHKFLWFVYNGTLYVSPLKEQTSELLDVSEDAV  139
             S  ++G VD+K+++ +AQ+FL+RLA+EH+F WF+YNG LYVSP   Q S+ L+VS DA 
Sbjct  143  -SRGITGVVDAKIRAGNAQEFLDRLALEHQFQWFLYNGKLYVSPQSGQVSQRLEVSADAA  201

Query  140  PDLKNALTQIGLLDDRFGWGELPDEGTVIVSGPKRYVKFVRSLSRkkkkgdekkeVMVFP  199
            PDLK+ALT+IGLLD RFGWGELPDEG V+VSGP RYV ++R++S+ K K+++K +VM+F+
Sbjct  202  PDLKQALTDIGLLDKRFGWGELPDEGVVLVSGPARYVELIRGFSKEKVKAQDKHQVMMFS  261

Query  200  LKYALADDRSINYRNKSINIPGVASMLSNLLGGGKKAPLAIDTMDFKSPAQSMEAFSAMQ  259
            L+YA   DR I+YR++SI IPGVA++L  LL +  ++PL+ D      PA ++ A   M 
Sbjct  262  LRYAAVADREIQYREQSITIPGVATLLDGLLESQHRPPLPQD------PAANIRAMQDMA  315

Query  260  ENSISRINNRIADRYATPSEINAKLSDNSKVNSTISADTRNNAILIRDDYERKEMYEDLI  319
            + + S+I N  ++R ATP+      S++++    + AD RNNA+LI DD E++E Y++L+
Sbjct  316  DMGQSKIMNLASNRKATPARSGESKSNSNR---RVVADVRNNAVLIYDDPEKRETYQQLV  372

Query  320  AQLDQPRHVIEIDAIILDIDREKLSELGFNWQGGSGNTEAKINTSGADPFLKSGSSATVT  379
             QLDQP +++EIDA+ILDIDR +LS L   W + +G+ +  + +S     L +G+S+T+ 
Sbjct  373  QQLDQPSNLVEIDAVILDIDRSQLSSLESRWSARAGSVN--FGSS-----LLTGGSSTLF  425

Query  380  IQDFDHFFAQIRALETDGDASLVANPSILTIENQPAIIDFNNTAFIKSTGERVANVSEIT  439
            I+DFD+FFA+I+ALE +G AS++A PS+LT+ENQPA+IDF+ TA+I +TGERVANV  +T
Sbjct  426  INDFDRFFADIQALEGQGVASVIARPSVLTLENQPAVIDFSRTAYITTTGERVANVQPVT  485

Query  440  AGTSLQVLPRLIDSEAERVIQLFLDIEDGDIESNSGADTPSVSKGSISTQAVIKTERSLV  499
            AGTSL+V+PR I +E    +QL++DIEDG++E   + DTP V +G++STQAVI  +RSLV
Sbjct  486  AGTSLRVIPRTIAGEQPNRFQLIVDIEDGQLERTRDNDTPDVKRGTVSTQAVIGENRSLV  545

Query  500  IGGFKVEQNTQRESKVPLLGDLPGIGKLFSYTSKAHSKRERLFIITPRLVGNESNPLQYV  559
            IGGF V+++ +R+ KVP+LG LP IG LF+      S+RERLFI+TPRLVG++ +P +Y+
Sbjct  546  IGGFHVDESGERQDKVPILGSLPVIGALFTSKRHEVSRRERLFILTPRLVGDQLDPSRYI  605

Query  560  SKGDQEMLAEALESQKDKHARDFLKITRAQVGRAFEELINLYIPNGFSLQTSAPYGIEYY  619
            ++ ++  L  AL       +R+     R +V+++F EL N  +P ++  ++S+  ++   
Sbjct  606  ARENRPQLDRALALSGSPSTRQ---QKRDRVSKTFSELANGRLPPDIK-ESSSGVALKDL  661

Query  620  CSPSEHFKINTKKLQWYNSEDYSILVGKIRNESPHPNRFDESSCSHKDTIAVSVRPDTML  679
            C   + + I++ + QW++++ + I VG +RN+S++++ F  +SC+   T+AV++ P T L
Sbjct  662  CRVDHGLSIDASRGQWFSGDTFDITVGVVRNDSARAKAFSLASCAGARTLAVTMLPVTEL  721

Query  680  KPWESVEVLLAVR  692
            +P +S EV++A R
Sbjct  722  QPGQSTEVFVATR  734

17) rscC in NC_017911


> AY597282|28|G28|51103173|AAT96315.1|Pseudomonas_viridiflava_RMX23.1a|-|28074..30335|hrcC|-|HrcC
Length=753

 Score =  498 bits (1879),  Expect = 4e-142, Method: Compositional matrix adjust.
 Identities = 301/670 (45%), Positives = 485/670 (73%), Gaps = 25/670 (3%)

Query  21   KRTHWRNVFLFSWLLVSAQSALAAIPSEWKNTAYAYEAEHKPVREVLEDFAQTFGTQLQI  80
            KR  W +V     L V A+   A++P EW+++AYAYEA + P+  VL DFA ++G  L+ 
Sbjct  89   KRLFWISV-----LCVQAEVVTAGVPEEWRQSAYAYEASQTPLTKVLSDFASSYGVGLDS  143

Query  81   EGLLEGIVNGKIRANTPQSLLDRLGVEHRFQWYLYNNTLYVSTLDQQESARLEVSSETIA  140
             G+  G+V++KIRA  +Q +LDRL++EH+FQW+LYN  LYVS    Q S RLEVS+++ +
Sbjct  144  RGI-TGVVDAKIRAGNAQEFLDRLALEHQFQWFLYNGKLYVSPQSGQVSQRLEVSADAAP  202

Query  141  DLKQALTDIGLLDSRFGWGELPDDGIVLVSGPRRYIEQVKQFSSQRRSVDEKQSVLSFPL  200
            DLKQALTDIGLLD RFGWGELPD+G+VLVSGP RY+E ++ FS ++   ++K+ V+ F+L
Sbjct  203  DLKQALTDIGLLDKRFGWGELPDEGVVLVSGPARYVELIRGFSKEKVKAQDKHQVMMFSL  262

Query  201  KFANAADRHVDYRGQKITIAGVSSIVRGLLEPRSNATPPALAQRPASQPAPLVPNVPRLS  260
            ++A  ADR+++YR Q ITI+GV++++ GLLE++     P+L+Q PA++  ++  +++ ++
Sbjct  263  RYAAVADREIQYREQSITIPGVATLLDGLLESQHR---PPLPQDPAANIRAM-QDMADMG  318

Query  261  NPLLGQMLATNSTPMPMDIGATLTPRAPAPTSRIRVEADMRNNAVLIYDLPERQAMYREL  320
            ++ + + LA+N  + P   G +       + S  RV AD+RNNAVLIYD PE++  Y++L
Sbjct  319  QSKIMN-LASNRKATPARSGES------KSNSNRRVVADVRNNAVLIYDDPEKRETYQQL  371

Query  321  IAQLDVARKLVEIDTIILDIERTQLREFGVNWGFQNSRFRGGANMAPGTSQQLSIENRDR  380
            + QLD + +LVEID++ILDI+R+QL  +   W+ + +    G+++  G S  L I++ DR
Sbjct  372  VQQLDQPSNLVEIDAVILDIDRSQLSSLESRWSARAGSVNFGSSLLTGGSSTLFINDFDR  431

Query  381  FYADIRALEAKGLATMVSNPSVLTLENQPAVIDFNRTQYL-TPGRQNATILPVTVGTSVQ  439
            F+ADI+ALE++G+A++++ PSVLTLENQPAVIDF+RT Y+ T G + A + PVT GTS++
Sbjct  432  FFADIQALEGQGVASVIARPSVLTLENQPAVIDFSRTAYITTTGERVANVQPVTAGTSLR  491

Query  440  VVPRVITSRGSHQIHLVVDIEDGTFDESNPNRDLNNLDVRRGNVSTQAVMAEKRSMVVGG  499
            V+PR I++  +++++L+VDIEDG ++     RD +  DV+RG VSTQAV++E+RS+V+GG
Sbjct  492  VIPRTIAGEQPNRFQLIVDIEDGQLE---RTRDNDTPDVKRGTVSTQAVIGENRSLVIGG  548

Query  500  FHVTESTDKHNKVPLLGDIPLLGKALFssserqnnrrerLFIITPRVIGDQADPSRYLPQ  559
            FHV ES ++++KVP+LG +P++G ALF+S  ++ +RRERLFI+TPR++GDQ DPSRY+++
Sbjct  549  FHVDESGERQDKVPILGSLPVIG-ALFTSKRHEVSRRERLFILTPRLVGDQLDPSRYIAR  607

Query  560  ADQAELQTALAPLARRNAPHQPEIKRSDIISTLAHLVTGEVPKAFKLAPMPLGLNTLCSP  619
             ++++L+ ALA L+   +P   + KR  +  T+++L  G +P  +K ++  ++L+ LC  
Sbjct  608  ENRPQLDRALA-LS--GSPSTRQQKRDRVSKTFSELANGRLPPDIKESSSGVALKDLCRV  664

Query  620  RDLLALNTERSQWYAGPEYNVAVVVMRNQFNRNVRIDEKECSNSQTLAVTVWPRAWLKPG  679
             + L++++ R+QW++G  ++++V V+RN+  R   +    C+ ++TLAVT+ P + L+PG
Sbjct  665  DHGLSIDASRGQWFSGDTFDITVGVVRNDSARAKAFSLASCAGARTLAVTMLPVTELQPG  724

Query  680  EEAEVFIAMR  689
            + +EVF+A R
Sbjct  725  QSTEVFVATR  734

18) H045_00215 in NC_020209


> AY597282|28|G28|51103173|AAT96315.1|Pseudomonas_viridiflava_RMX23.1a|-|28074..30335|hrcC|-|HrcC
Length=753

 Score =  494 bits (1861),  Expect = 9e-141, Method: Compositional matrix adjust.
 Identities = 297/651 (46%), Positives = 466/651 (72%), Gaps = 25/651 (3%)

Query  41   VVAAIPSDWKNTAYAYEAEHKPLRDVLEDFAQTFGTQLQIDGLLDGVVNGKIRANTPQSL  100
            V A++P +W+++AYAYEA + PL  VL DFA ++G  L+  G+  GVV++KIRA  +Q +
Sbjct  104  VTAGVPEEWRQSAYAYEASQTPLTKVLSDFASSYGVGLDSRGI-TGVVDAKIRAGNAQEF  162

Query  101  LDRLGVEHRFQWYLYNNTLYISTLDLQESARLEVSAETVADLKRALTDIGLLDSRFGWGE  160
            LDRL++EH+FQW+LYN  LY+S    Q S RLEVSA++ +DLK+ALTDIGLLD RFGWGE
Sbjct  163  LDRLALEHQFQWFLYNGKLYVSPQSGQVSQRLEVSADAAPDLKQALTDIGLLDKRFGWGE  222

Query  161  LPDDGVVLVSGPKRYIDQIKQFSSQRKSADEKQSVLSYPLKFANAGDRQIDYRGEKIAIP  220
            LPD+GVVLVSGP RY++ I+ FS ++  A++K+ V+ ++L++A  +DR+I+YR + I+IP
Sbjct  223  LPDEGVVLVSGPARYVELIRGFSKEKVKAQDKHQVMMFSLRYAAVADREIQYREQSITIP  282

Query  221  GVASMLRGLLEPRSPSTLSTMSPRPSASQPSPITPNYPRLNNPILGQMLGQTANAGQLET  280
            GVA++L GLLE++  + L        + +P++       + +   ++++  ++N      
Sbjct  283  GVATLLDGLLESQHRPPL--------PQDPAANIRAMQDMADMGQSKIMNLASN----RK  330

Query  281  GATLTPRAPVSAGRIRVEADVRNNAVLIYDLPERQAMYRELITQLDVARKMVEIDAIILD  340
            ++   +  + S +  RV ADVRNNAVLIYD PE++  Y++L+ QLD + ++VEIDA+ILD
Sbjct  331  ATPARSGESKSNSNRRVVADVRNNAVLIYDDPEKRETYQQLVQQLDQPSNLVEIDAVILD  390

Query  341  IERSQLREFGVNW----GNSRFSSDMRLAPGSSSQLSIENRDRFFAKIRALEQRGLATMV  396
            I+RSQL  +   W    G+  F+S   L  G+SS L I++ DRFFA I+ALE +G+A+++
Sbjct  391  IDRSQLSSLESRWSARAGSVNFGSS--LLTGGSSTLFINDFDRFFADIQALEGQGVASVI  448

Query  397  SNPSVLTLENQPSVIDFNRTQYLTAGTE-VATVLPITVGTSLQVVPRVITTRGTHQVHLL  455
            + PSVLTLENQP+VIDF+RT Y+T+  E VA V P+T GTSL+V+PR I+    ++ +L+
Sbjct  449  ARPSVLTLENQPAVIDFSRTAYITTTGERVANVQPVTAGTSLRVIPRTIAGEQPNRFQLI  508

Query  456  VDIEDGNFDESDPNRLGPDVRRGNVSTQAVMAEKRSLVVGGFHVTESIDKRNKIPLLGDI  515
            VDIEDG+++ +  N   PDV+RG VSTQAV++E+RSLV+GGFHV ES ++++K+P+LG +
Sbjct  509  VDIEDGQLERTRDND-TPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKVPILGSL  567

Query  516  PLLGKALFssserknnrrerLFILTPRVIGDQADPSRYLPQDDQAELQAALKPLARRYAE  575
            P++G ALF+S  +  +RRERLFILTPR++GDQ DPSRY++++++++L+ AL   +   + 
Sbjct  568  PVIG-ALFTSKRHEVSRRERLFILTPRLVGDQLDPSRYIARENRPQLDRALALSGSPSTR  626

Query  576  HAPVIKRSDITGTLANLVTGRVPLAFKAAPMPLGLATLCSTRDLLAMNTERSQWYAGPQF  635
            +    KR  ++ T+++L  GR+P  +K ++  ++L  LC   + L++++ R+QW++G  F
Sbjct  627  QQ---KRDRVSKTFSELANGRLPPDIKESSSGVALKDLCRVDHGLSIDASRGQWFSGDTF  683

Query  636  NVAVVVLRNQLKRNVRIDEKECSTSQTLAVTVWPRAWLKPGEEAEVFIAMR  686
            +++V V+RN+  R   +    C+ ++TLAVT+ P + L+PG+ +EVF+A R
Sbjct  684  DITVGVVRNDSARAKAFSLASCAGARTLAVTMLPVTELQPGQSTEVFVATR  734

19) Pmen_0023 in NC_009439


> AY597282|28|G28|51103173|AAT96315.1|Pseudomonas_viridiflava_RMX23.1a|-|28074..30335|hrcC|-|HrcC
Length=753

 Score =  487 bits (1835),  Expect = 9e-139, Method: Compositional matrix adjust.
 Identities = 320/655 (49%), Positives = 474/655 (73%), Gaps = 32/655 (4%)

Query  24   PESWKQTAYAYDARQTDLNSALADFAREFGLSLDMPPMDGIVDGRIRASNPQEFLERLGR  83
            PE W+Q+AYAY+A QT L   L+DFA  +G++LD   + G+VD++IRA+N+QEFL+RL+ 
Sbjct  109  PEEWRQSAYAYEASQTPLTKVLSDFASSYGVGLDSRGITGVVDAKIRAGNAQEFLDRLAL  168

Query  84   EYQFQWFVYNETLYISPTREQTSARIEVSPDAVDDLENALTAIGLLDPRFGWGTLPEEGL  143
            E QFQWF+YN  LY+SP   Q S R+EVS+DA  DL +ALT IGLLD RFGWG LP+EG+
Sbjct  169  EHQFQWFLYNGKLYVSPQSGQVSQRLEVSADAAPDLKQALTDIGLLDKRFGWGELPDEGV  228

Query  144  VLVRGPAQYVQFIREYSQKVEEPEKAEKQDVIVFTLKYANAADRSIRYRDQELRVAGVAS  203
            VLV GPA+YV++IR +S+  E     +K++V++F+L+YA  ADR I+YR+Q + ++GVA+
Sbjct  229  VLVSGPARYVELIRGFSK--EKVKAQDKHQVMMFSLRYAAVADREIQYREQSITIPGVAT  286

Query  204  ILRELLETRSRGEPISGVGIFQPSGTTQGLAPTRPMGLPYAGMSgldgglleqgldNVLG  263
            +L  LLE++ R  P++     +P++  +++     MG                   +++ 
Sbjct  287  LLDGLLESQHRP-PLPQ----DPAANIRAMQDMADMG-----------------QSKIMN  324

Query  264  LA---QsssrkrsesrsrsqirvsADVRNNAVLIYDLPERKAIYQGLIQQLDVPRNLIEI  320
            LA   ++++ + +ES+S S+ RV ADVRNNAVLIYD PE++  YQ L+QQLD P NL+EI
Sbjct  325  LASNRKATPARSGESKSNSNRRVVADVRNNAVLIYDDPEKRETYQQLVQQLDQPSNLVEI  384

Query  321  DAVILDIDRNELAELSSRWAFNSGSVSGGANLFEPGTTSTLFIQDAGRFAAELRALEGTG  380
            DAVILDIDR++L+ L SRW+  +GSV+ G++L+  G +STLFI+D +RF A+++ALEG G
Sbjct  385  DAVILDIDRSQLSSLESRWSARAGSVNFGSSLL-TGGSSTLFINDFDRFFADIQALEGQG  443

Query  381  AASIMGNPSILTLENQPAVIDFSRTEYLTALAERVANIQPITAGTSLQVIPRSLNQGSRS  440
             AS+++ PS+LTLENQPAVIDFSRT Y+T+ +ERVAN+QP+TAGTSL+VIPR++     +
Sbjct  444  VASVIARPSVLTLENQPAVIDFSRTAYITTTGERVANVQPVTAGTSLRVIPRTIAGEQPN  503

Query  441  QVQLIVDIEDGQIIESNISEEQPSVRRGNVSTQAVIAEHGSLVIGGFHSLEANDRINKIP  500
            + QLIVDIEDGQ +E    ++ P V+RG VSTQAVI+E+ SLVIGGFH  E+ +R +K+P
Sbjct  504  RFQLIVDIEDGQ-LERTRDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKVP  562

Query  501  LLGDIPVIGKLLFQSrnrefnrrerlfilTPRLIGDQVNPARYVQHGNPHNLDRQLREID  560
            +LG +PVIG  LF S+ +E +RRERLFILTPRL+GDQ++P+RY+ + N  +LDR L   +
Sbjct  563  ILGSLPVIGA-LFTSKRHEVSRRERLFILTPRLVGDQLDPSRYIARENRPQLDRALALSG  621

Query  561  ERRRGTERPSRGDIEHAFTQLLDGIHPSGFDSAPLPLRAETLCNSDHGLTLDAERSQWFA  620
                +T +  R+ +  +F++L +G  P+++  ++  +    LC  DHGL++DA R+QWF+
Sbjct  622  S--PSTRQQKRDRVSKTFSELANGRLPPDIKESSSGVALKDLCRVDHGLSIDASRGQWFS  679

Query  621  RDGWGVAVVVARNDTAQPIRIDESRCGGRWAMGVSAWPRAWLQPGEESEVFIALR  675
             D  +++V V RND+A++  +  + C+G ++++V+  P + LQPG+ +EVF+A R
Sbjct  680  GDTFDITVGVVRNDSARAKAFSLASCAGARTLAVTMLPVTELQPGQSTEVFVATR  734

20) hrcC in NC_004578


> AY597282|28|G28|51103173|AAT96315.1|Pseudomonas_viridiflava_RMX23.1a|-|28074..30335|hrcC|-|HrcC
Length=753

 Score =  481 bits (1815),  Expect = 4e-137, Method: Compositional matrix adjust.
 Identities = 309/676 (46%), Positives = 482/676 (72%), Gaps = 30/676 (4%)

Query  3    KALMWLPLLLIGVIPATWAVTPEAWKHTAYAYDARQTELSTALADFAREFGMSLDMSPVQ  62
            K L W+++L +     T A  PE W+++AYAY+A QT L+  L+DFA  +G++LD   + 
Sbjct  89   KRLFWISVLCVQAEVVT-AGVPEEWRQSAYAYEASQTPLTKVLSDFASSYGVGLDSRGIT  147

Query  63   GKLDGRIRAQNPEEFLERLSQEYHFQWFVYNDTLYVSPSSEHTSARIEVSPDAVDDLQTA  122
            G +D++IRA N++EFL+RL+ E +FQWF+YN+ LYVSP S + S R+EVS+DA  DL+ A
Sbjct  148  GVVDAKIRAGNAQEFLDRLALEHQFQWFLYNGKLYVSPQSGQVSQRLEVSADAAPDLKQA  207

Query  123  LTDVGLLDKRFGWGSLPDEGVVLVRGPAKYVEFVRDYSKKVEKPDEKADKQDVVVLPLKY  182
            LTD+GLLDKRFGWG LPDEGVVLV GPA+YVE++R++SK   K++   DK++V++++L+Y
Sbjct  208  LTDIGLLDKRFGWGELPDEGVVLVSGPARYVELIRGFSKEKVKAQ---DKHQVMMFSLRY  264

Query  183  ANAADRTIRYRDQQLVVAGVASILQELLESRSRGESIDSVNLLPGQGSSVANSTGVAAAG  242
            A  ADR I+YR+Q + ++GVA++L+ LLES+ R        L  + ++++    ++A  G
Sbjct  265  AAVADREIQYREQSITIPGVATLLDGLLESQHRP------PLPQDPAANIRAMQDMADMG  318

Query  243  LPYNLGSNGIDTGALQQGIDRVLNFNSKKTAKGHASGKANIRVSADVRNNSVLIYDLPER  302
                      ++  ++ + +R    ++  +  G++ +++N RV ADVRNN+VLIYD PE+
Sbjct  319  ----------QSKIMNLASNR----KATPARSGESKSNSNRRVVADVRNNAVLIYDDPEK  364

Query  303  KAMYQKLVKELDVPRNLIEIDAVILDIDRNELAELSSRWNFNAGSVGGGANLFDAGTSST  362
            +  YQ+LV++LD P NL+EIDAVILDIDR++L+ L SRW+  AGSV  G++L+ +G SST
Sbjct  365  RETYQQLVQQLDQPSNLVEIDAVILDIDRSQLSSLESRWSARAGSVNFGSSLL-TGGSST  423

Query  363  LFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTATSERAADILP  422
            LF+++  +F A+++ALEG+G ASVI+ PS+LTLENQPAVID+SRT Y+T+T+ER A++ P
Sbjct  424  LFINDFDRFFADIQALEGQGVASVIARPSVLTLENQPAVIDFSRTAYITTTGERVANVQP  483

Query  423  ITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVSTQAVIAEHG  482
            +TAGTSL+VIPR++  +   + Q+IVDIEDGQ++ +  NDT P V+RG VSTQAVI+E+ 
Sbjct  484  VTAGTSLRVIPRTIAGEQPNRFQLIVDIEDGQLERTRDNDT-PDVKRGTVSTQAVIGENR  542

Query  483  SLVIGGFHGLEANDRIHKIPLLGDIPYIGKllfqsrsrelsqrerlfILTPRLIGDQVNP  542
            SLVIGGFH  E+ +R +K+P+LG +P IG  LF S+ +E+S+RERLFILTPRL+GDQ++P
Sbjct  543  SLVIGGFHVDESGERQDKVPILGSLPVIG-ALFTSKRHEVSRRERLFILTPRLVGDQLDP  601

Query  543  ARYVQNGNPHDVDDQMKKIKERRDGGELPTRGDIQKVFTQMIDGAAPEGLRAGQTLPFET  602
            +RY+   N  ++D  +  +       +   R+ + K F+++ +G  P +++ + +     
Sbjct  602  SRYIARENRPQLDRAL-ALSGSPSTRQ-QKRDRVSKTFSELANGRLPPDIKESSS-GVAL  658

Query  603  DSLCDPGEGLTLDGQRSQWFVKKDWGVAVVVARNNTDKPVRIDESRCGGRWVIGVAAWPH  662
              LC  ++GL++D+ R+QWF     +++V V RN++ ++  +  + C+G + ++V+  P 
Sbjct  659  KDLCRVDHGLSIDASRGQWFSGDTFDITVGVVRNDSARAKAFSLASCAGARTLAVTMLPV  718

Query  663  AWLQPGEESEVYIAVR  678
            + LQPG+ +EV++A R
Sbjct  719  TELQPGQSTEVFVATR  734

21) rscC in NC_012660


> AY597282|28|G28|51103173|AAT96315.1|Pseudomonas_viridiflava_RMX23.1a|-|28074..30335|hrcC|-|HrcC
Length=753

 Score =  479 bits (1805),  Expect = 2e-136, Method: Compositional matrix adjust.
 Identities = 293/664 (45%), Positives = 474/664 (72%), Gaps = 23/664 (3%)

Query  27   WLVLLGCIMAPAHNLLAAIPAEWKNTAYAYEADHKPLREVLEDFAQTFGTQLQIEGLLEG  86
            W+ +L C+   A+ + A++P EW+++AYAYEA + PL  VL DFA ++G  L+  G+  G
Sbjct  93   WISVL-CV--QAEVVTAGVPEEWRQSAYAYEASQTPLTKVLSDFASSYGVGLDSRGI-TG  148

Query  87   DVNGKIRANTPQSMLDRLGVEHRFQWYLYNNTLFVSTLDQQESARLEVSSETISDLKQAL  146
             V++KIRA  +Q  LDRL++EH+FQW+LYN  L+VS    Q S RLEVS+++ +DLKQAL
Sbjct  149  VVDAKIRAGNAQEFLDRLALEHQFQWFLYNGKLYVSPQSGQVSQRLEVSADAAPDLKQAL  208

Query  147  TDIGLLDSRFGWGELPEDGVVLVSGPKTYIDQIKQFSSKRRSADEKQSVLSFPLKFANAA  206
            TDIGLLD RFGWGELP++GVVLVSGP  Y++ I+ FS  +  A++K+ V+ F+L++A  A
Sbjct  209  TDIGLLDKRFGWGELPDEGVVLVSGPARYVELIRGFSKEKVKAQDKHQVMMFSLRYAAVA  268

Query  207  DRKVDYRGEKLVVPGVANILRGLLEPRSASTLTGMSQPDSSQPSPLTPNVPRLGNPLLGQ  266
            DR ++YR + + +PGVA +L GLLE++  + L      D++       +++ +G++ + +
Sbjct  269  DREIQYREQSITIPGVATLLDGLLESQHRPPLP----QDPAANIRAMQDMADMGQSKIMN  324

Query  267  MLGANGNAGQLDTGPTVTPRAPVSKSRIRVEADVRNNAVLIYDLPERQAMYRDLITQLDV  326
            +      A++  + P+ +  +  + +R RV ADVRNNAVLIYD PE++  Y++L+ QLD 
Sbjct  325  L------ASNRKATPARSGESKSNSNR-RVVADVRNNAVLIYDDPEKRETYQQLVQQLDQ  377

Query  327  ARKlieidaiildieRTQLREFGVNWGFQNSRFRGGVNMAPGTSSQVSIENRDRFYADIR  386
            + +L+EIDA+ILDI+R+QL  +   W+ + +    G ++  G SS + I++ DRF+ADI+
Sbjct  378  PSNLVEIDAVILDIDRSQLSSLESRWSARAGSVNFGSSLLTGGSSTLFINDFDRFFADIQ  437

Query  387  ALEAKGLATMVSNPSVLTLENQPAVIDFNRTQYI-SPGRDYATILPVTVGTSLQVVPRVT  445
            ALE++G+A++++ PSVLTLENQPAVIDF+RT YI + G   A + PVT GTSL+V+PR  
Sbjct  438  ALEGQGVASVIARPSVLTLENQPAVIDFSRTAYITTTGERVANVQPVTAGTSLRVIPRTI  497

Query  446  TGRGVHQIHLVVDIEDGNFDETNPERDPNHPDVRRGKVSTQAVMQEKRSLVVGGFHVTDS  505
            +G   ++++L+VDIEDG+++ T   RD + PDV+RG VSTQAV+ E+RSLV+GGFHV +S
Sbjct  498  AGEQPNRFQLIVDIEDGQLERT---RDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDES  554

Query  506  SDQQKKIPLLGDIPLLGKTLFSSTERHNNRRERLFILTPRVIGDQDDPSRYLPQDDQAEL  565
            +++Q K+P+LG +P++G +LF+S  ++ +RRERLFILTPR++GDQ DPSRY++++++++L
Sbjct  555  GERQDKVPILGSLPVIG-ALFTSKRHEVSRRERLFILTPRLVGDQLDPSRYIARENRPQL  613

Query  566  QAALTPLARRYSPHQPVIKRSDIITTLARLVSGEVPKAFNAAPMPLGLNTLCSTRDLLAL  625
            + AL+  +   + +Q   KR  +  T++ L +G +P  ++ ++  ++L+ LC   + L++
Sbjct  614  DRALALSGSPSTRQQ---KRDRVSKTFSELANGRLPPDIKESSSGVALKDLCRVDHGLSI  670

Query  626  NTERSQWYAGPDYNVAVVVLRNQFKRNVRIDEKECSNSQTLAVTVWPRAWLKPGEEAEVF  685
            ++ R+QW++G  ++++V V+RN+  R   +    C+ ++TLAVT+ P + L+PG+ +EVF
Sbjct  671  DASRGQWFSGDTFDITVGVVRNDSARAKAFSLASCAGARTLAVTMLPVTELQPGQSTEVF  730

Query  686  IAMR  689
            +A R
Sbjct  731  VATR  734

22) HrcC in NC_007005


> AY597282|28|G28|51103173|AAT96315.1|Pseudomonas_viridiflava_RMX23.1a|-|28074..30335|hrcC|-|HrcC
Length=753

 Score =  478 bits (1803),  Expect = 3e-136, Method: Compositional matrix adjust.
 Identities = 313/678 (47%), Positives = 479/678 (71%), Gaps = 33/678 (4%)

Query  3    KALMWLPLLLIGLSPATWAVTPEAWKHTAYAYDARQTELATALADFAKEFGMALDMPPIP  62
            K L W+++L +     T A  PE W+++AYAY+A QT L+  L+DFA  +G++LD   I 
Sbjct  89   KRLFWISVLCVQAEVVT-AGVPEEWRQSAYAYEASQTPLTKVLSDFASSYGVGLDSRGIT  147

Query  63   GVLDDRIRAQSPEEFLDRLGQEYHFQWFVYNDTLYVSPSSEHTSARIEVSSDAVDDLQTA  122
            GV+D +IRA +++EFLDRL+ E +FQWF+YN+ LYVSP S + S R+EVS+DA  DL+ A
Sbjct  148  GVVDAKIRAGNAQEFLDRLALEHQFQWFLYNGKLYVSPQSGQVSQRLEVSADAAPDLKQA  207

Query  123  LTDVGLLDKRFGWGVLPNEGVVLVRGPAKYVELVRDYSK-KVEAPEKGDKQDIIVFPLKY  181
            LTD+GLLDKRFGWG LP+EGVVLV GPA+YVEL+R++SK KV A    DK+++++F+L+Y
Sbjct  208  LTDIGLLDKRFGWGELPDEGVVLVSGPARYVELIRGFSKEKVKAQ---DKHQVMMFSLRY  264

Query  182  ASAADRTIRYRDQQLVVAGVASILQDLLDTRSRGGSINGMDllgrggrgnglagggSPDA  241
            A+ ADR I+YR+Q + ++GVA++L++LL+++ R                        P+ 
Sbjct  265  AAVADREIQYREQSITIPGVATLLDGLLESQHRPPL---------------------PQD  303

Query  242  PSLPMSSSGLDTNALEQGLDQVLHYggggksagksrsggraNIRVTADVRNNAVLIYDLP  301
            P+  + +   D   + Q+    L     + +A  + S + +N RV ADVRNNAVLIYD P
Sbjct  304  PAANIRAMQ-DMADMGQSKIMNLASNRKATPARSGESKSNSNRRVVADVRNNAVLIYDDP  362

Query  302  SRKAMYEKLIKELDVSRNLIEIDAVILDIDRNELAELSSRWNFNAGSVNGGANMFDAGTS  361
             ++  Y++L+++LD + NL+EIDAVILDIDR++L+ L SRW+  AGSVN G++++ +G S
Sbjct  363  EKRETYQQLVQQLDQPSNLVEIDAVILDIDRSQLSSLESRWSARAGSVNFGSSLL-TGGS  421

Query  362  STLFIQNAGKFAAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYLTATSERVANI  421
            STLFI++ ++F A+++ALEG+G ASVI+ PS+LTLENQPAVIDFSRT Y+T+T+ERVAN+
Sbjct  422  STLFINDFDRFFADIQALEGQGVASVIARPSVLTLENQPAVIDFSRTAYITTTGERVANV  481

Query  422  EPITAGTSLQVTPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVSTQAVIAE  481
            +P+TAGTSL+V PR++  +   + QLIVDIEDGQ++ +  NDT P V++G VSTQAVI+E
Sbjct  482  QPVTAGTSLRVIPRTIAGEQPNRFQLIVDIEDGQLERTRDNDT-PDVKRGTVSTQAVIGE  540

Query  482  HGSLVIGGFHGLEANDKVHKVPLLGDIPYIGKllfqsrsrelsqrerlfILTPRLIGDQV  541
            + SLVIGGFH  E+ ++ +KVP+LG +P IG  LF S+ +E+S+RERLFILTPRL+GDQ+
Sbjct  541  NRSLVIGGFHVDESGERQDKVPILGSLPVIG-ALFTSKRHEVSRRERLFILTPRLVGDQL  599

Query  542  NPARYVQNGNPHDVDDQMKRIKERRDGGELPTRGDIQKVFTQMVDGAAPEGMHDGETLPF  601
            +P+RY+   N  ++D  +  +       +   R+ + K F+++ +G  P ++ ++ +   
Sbjct  600  DPSRYIARENRPQLDRALA-LSGSPSTRQ-QKRDRVSKTFSELANGRLPPDIKESSS-GV  656

Query  602  ETDSLCDPGQGLSLDGQRSQWYARKDWGVAVVVARNNTDKPVRIDESRCGGRWVIGVAAW  661
                LC  ++GLS+D+ R+QW++    +++V V RN++ ++  +  + C+G + ++V+  
Sbjct  657  ALKDLCRVDHGLSIDASRGQWFSGDTFDITVGVVRNDSARAKAFSLASCAGARTLAVTML  716

Query  662  PHAWLQPGEESEVYIAVR  679
            P + LQPG+ +EV++A R
Sbjct  717  PVTELQPGQSTEVFVATR  734

23) hrcC in NC_005773


> AY597282|28|G28|51103173|AAT96315.1|Pseudomonas_viridiflava_RMX23.1a|-|28074..30335|hrcC|-|HrcC
Length=753

 Score =  477 bits (1797),  Expect = 1e-135, Method: Compositional matrix adjust.
 Identities = 310/681 (46%), Positives = 479/681 (71%), Gaps = 40/681 (5%)

Query  3    KALMWLPLLLIGLTPVTWAVTPEAWKHTAYAYDARQTELTTALADFAKEFGMALDMPSIP  62
            K L W+++L +    VT A  PE W+++AYAY+A QT LT  L+DFA  +G++LD  +I 
Sbjct  89   KRLFWISVLCVQAEVVT-AGVPEEWRQSAYAYEASQTPLTKVLSDFASSYGVGLDSRGIT  147

Query  63   GTLDGRIRAQSPEEFLDRLGQEYHFQWFVYNDTLYVSPSSEHTSARVEVSSDAVDDLQTA  122
            G +D++IRA +++EFLDRL+ E +FQWF+YN+ LYVSP S + S R+EVS+DA  DL+ A
Sbjct  148  GVVDAKIRAGNAQEFLDRLALEHQFQWFLYNGKLYVSPQSGQVSQRLEVSADAAPDLKQA  207

Query  123  LTDVGLLDKRFGWGVLPNEGVVLVRGPAKYVELVRDYSKKVETPEKGDKQDIVVFPLKYA  182
            LTD+GLLDKRFGWG LP+EGVVLV GPA+YVEL+R++SK  E     DK+++++F+L+YA
Sbjct  208  LTDIGLLDKRFGWGELPDEGVVLVSGPARYVELIRGFSK--EKVKAQDKHQVMMFSLRYA  265

Query  183  NASDRTIRYRDQQLTVAGVASILQDLLDTRSRGEainginllghgganaglaggdadTQS  242
              +DR I+YR+Q +T++GVA++L++LL+++ R                           +
Sbjct  266  AVADREIQYREQSITIPGVATLLDGLLESQHR--------------------------PP  299

Query  243  LPLDSSGI-----DTGALQQGLDRVLSYgsgskksgksrsggrANIRVTADVRNNAVLIY  297
            LP D+++      D + + Q+    L+    +  +  + S + +N RV ADVRNNAVLIY
Sbjct  300  LPQDPAANIRAMQDMADMGQSKIMNLASNRKATPARSGESKSNSNRRVVADVRNNAVLIY  359

Query  298  DLPSRKPMYEKLIKELDVSRNLIEIDAVILDIDRNELAELSSRWNFNAGSVGGGVNLFDA  357
            D P ++  Y++L+++LD + NL+EIDAVILDIDR++L+ L SRW+  AGSV  G +L+ +
Sbjct  360  DDPEKRETYQQLVQQLDQPSNLVEIDAVILDIDRSQLSSLESRWSARAGSVNFGSSLL-T  418

Query  358  GTSSTMFIQNAGKFSSELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYITATSERV  417
            G SST+FI++ ++F ++++ALEG+G ASVI+ PS+LTLENQPAVIDFSRT YIT+T+ERV
Sbjct  419  GGSSTLFINDFDRFFADIQALEGQGVASVIARPSVLTLENQPAVIDFSRTAYITTTGERV  478

Query  418  ANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVSTQAV  477
            AN++P+TAGTSL+VIPR++  +   + QLIVDIEDGQ++ +  NDT P V++G VSTQAV
Sbjct  479  ANVQPVTAGTSLRVIPRTIAGEQPNRFQLIVDIEDGQLERTRDNDT-PDVKRGTVSTQAV  537

Query  478  IAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKllfqsrsrelsqrerlfILTPRLIG  537
            I+E+ SLVIGGFH  E+ ++ +K+P+LG +P IG  LF S+ +E+S+RERLFILTPRL+G
Sbjct  538  IGENRSLVIGGFHVDESGERQDKVPILGSLPVIG-ALFTSKRHEVSRRERLFILTPRLVG  596

Query  538  DQVNPARYVQNGNPHDVDDQMKRIKERRDGGELPTRGDVQKVFTQMVDGTAPVGMRTGET  597
            DQ++P+RY+   N  ++D  +  +       +   R+ V K F+++ +G  P +++ + +
Sbjct  597  DQLDPSRYIARENRPQLDRALA-LSGSPSTRQ-QKRDRVSKTFSELANGRLPPDIKESSS  654

Query  598  LPFETDSLCDPGAGLTLDGQRSQWYARKDWGVAVVVAHNNTDKPVRIDESRCGGRWVIGV  657
                   LC  + GL++D+ R+QW++    +++V V +N++ ++  +  + C+G + ++V
Sbjct  655  -GVALKDLCRVDHGLSIDASRGQWFSGDTFDITVGVVRNDSARAKAFSLASCAGARTLAV  713

Query  658  AAWPHAWLQPGEESEVYIAVR  678
            +  P + LQPG+ +EV++A R
Sbjct  714  TMLPVTELQPGQSTEVFVATR  734