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Homologs of HH0269 gene of NC_004917_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) HH0269
( NP_859800.1 )

integrase

NC_004917
(Helicobacter hepaticus ATCC 51449)

9e-132

100

2) HCBAA847_1404
( YP_007601265.1 )

putative phage integrase

NC_020555
(Helicobacter cinaedi ATCC BAA-847)

4e-86

3) HCN_1328
( YP_006235649.1 )

phage integrase

NC_017761
(Helicobacter cinaedi PAGU611)

8e-85

• Sequence Alignments

1) HH0269 in NC_004917


> NC_004917_P1|37|G37|32265768|NP_859800.1|Helicobacter_hepaticus_ATCC_51449|-|40188..41033|-|HH0269|integrase
Length=281

 Score =  462 bits (1741),  Expect = 9e-132, Method: Compositional matrix adjust.
 Identities = 281/281 (100%), Positives = 281/281 (100%), Gaps = 0/281 (0%)

Query  1    MIQKKEIVSSLHIRDIHHSQISKIIMQLQLRIPEGAKRLLAHCYNIWQFALSRGLAEFNI  60
            MIQKKEIVSSLHIRDIHHSQISKIIMQLQLRIPEGAKRLLAHCYNIWQFALSRGLAEFNI
Sbjct  1    MIQKKEIVSSLHIRDIHHSQISKIIMQLQLRIPEGAKRLLAHCYNIWQFALSRGLAEFNI  60

Query  61   IANIDKKTILLPKSDRHYAKITDRVVLGELMRAIDSYPNSIIIKCALQFVAIIPLRASNL  120
            IANIDKKTILLPKSDRHYAKITDRVVLGELMRAIDSYPNSIIIKCALQFVAIIPLRASNL
Sbjct  61   IANIDKKTILLPKSDRHYAKITDRVVLGELMRAIDSYPNSIIIKCALQFVAIIPLRASNL  120

Query  121  ALLKWEYIDFESKTLTIPRGNMKVKSNHLTDFTLPLPRQAIEILQEIKQFTGWGKLVFHA  180
            ALLKWEYIDFESKTLTIPRGNMKVKSNHLTDFTLPLPRQAIEILQEIKQFTGWGKLVFHA
Sbjct  121  ALLKWEYIDFESKTLTIPRGNMKVKSNHLTDFTLPLPRQAIEILQEIKQFTGWGKLVFHA  180

Query  181  STKIHSPLVMESLNKALRSMGFADEKRGRKQTIHSFRGTFRSLCNTYQSEHNASFEIKEA  240
            STKIHSPLVMESLNKALRSMGFADEKRGRKQTIHSFRGTFRSLCNTYQSEHNASFEIKEA
Sbjct  181  STKIHSPLVMESLNKALRSMGFADEKRGRKQTIHSFRGTFRSLCNTYQSEHNASFEIKEA  240

Query  241  VLDHKVGNRVTEAYLYKVEYVEQIRPLLQWWADFLDRVREE  281
            VLDHKVGNRVTEAYLYKVEYVEQIRPLLQWWADFLDRVREE
Sbjct  241  VLDHKVGNRVTEAYLYKVEYVEQIRPLLQWWADFLDRVREE  281

2) HCBAA847_1404 in NC_020555


> NC_004917_P1|37|G37|32265768|NP_859800.1|Helicobacter_hepaticus_ATCC_51449|-|40188..41033|-|HH0269|integrase
Length=281

 Score =  311 bits (1166),  Expect = 4e-86, Method: Compositional matrix adjust.
 Identities = 184/276 (67%), Positives = 222/276 (81%), Gaps = 0/276 (0%)

Query  103  RKIVSSTHIEDIAHSDITHIIAKIQDYRVELARRLFAHCLSIWQFALGRGYTETNYLFKI  162
            + IVSS HI DI HS+I+ II ++Q    E A+RL+AHC +IWQFAL+RG +E N + +I
Sbjct  5    KEIVSSLHIRDIHHSQISKIIMQLQLRIPEGAKRLLAHCYNIWQFALSRGLAEFNIIANI  64

Query  163  DTKQLLLPKVTNHYEKITDEATLGELLRAIDGYIHSSIIRSALKFVSIIPLRAENLATLK  222
            D K +LLPK   HY KITD   LGEL+RAID+Y +S II+ AL+FV+IIPLRA NLA LK
Sbjct  65   DKKTILLPKSDRHYAKITDRVVLGELMRAIDSYPNSIIIKCALQFVAIIPLRASNLALLK  124

Query  223  WSYIDFEKKILTIPRSEMKVKKKSFPDFSLPLPTQAIEILKEIKKNTGWGVWIFHGHNKI  282
            W YIDFE K LTIPR++MKVK + + DF+LPLP QAIEIL+EIK+ TGWG  +FH+  KI
Sbjct  125  WEYIDFESKTLTIPRGNMKVKSNHLTDFTLPLPRQAIEILQEIKQFTGWGKLVFHASTKI  184

Query  283  HKPMVSESANKALRSMGFADAKRGRKQTLHSFRGTFRSLCDTHQDKHNASFEIKEAVLDH  342
            H P+V ES NKALRSMGFAD KRGRKQT+HSFRGTFRSLC+T Q  HNASFEIKEAVLDH
Sbjct  185  HSPLVMESLNKALRSMGFADEKRGRKQTIHSFRGTFRSLCNTYQSEHNASFEIKEAVLDH  244

Query  343  RIGNNVTQAYLHKAYYVEQMRPLLQWWADYLDELKE  378
            ++GN VT+AYL K  YVEQ+RPLLQWWAD+LD ++E
Sbjct  245  KVGNRVTEAYLYKVEYVEQIRPLLQWWADFLDRVRE  280

3) HCN_1328 in NC_017761


> NC_004917_P1|37|G37|32265768|NP_859800.1|Helicobacter_hepaticus_ATCC_51449|-|40188..41033|-|HH0269|integrase
Length=281

 Score =  307 bits (1150),  Expect = 8e-85, Method: Compositional matrix adjust.
 Identities = 181/276 (66%), Positives = 221/276 (81%), Gaps = 0/276 (0%)

Query  103  RKIVSSTHIEDIAHSDITHIIAKIQDYRVELARRLFAHCLSIWQFALGRGYTETNCLFKI  162
            + IVSS HI DI HS+I+ II ++Q    E A+RL+AHC +IWQFAL+RG +E N + +I
Sbjct  5    KEIVSSLHIRDIHHSQISKIIMQLQLRIPEGAKRLLAHCYNIWQFALSRGLAEFNIIANI  64

Query  163  DTKQLLLPKVTNHYEKITDEATLGELLRAINGYIHSSIIRSALKFVSIIPLRAENLATLK  222
            D K +LLPK   HY KITD   LGEL+RAI++Y +S II+ AL+FV+IIPLRA NLA LK
Sbjct  65   DKKTILLPKSDRHYAKITDRVVLGELMRAIDSYPNSIIIKCALQFVAIIPLRASNLALLK  124

Query  223  WSYVDFEKKILTIPRSEMKVKKKSFPDFSLPLPTQAIEILKEIKKNTGWGVWIFHGHNKI  282
            W Y+DFE K LTIPR++MKVK + + DF+LPLP QAIEIL+EIK+ TGWG  +FH+  KI
Sbjct  125  WEYIDFESKTLTIPRGNMKVKSNHLTDFTLPLPRQAIEILQEIKQFTGWGKLVFHASTKI  184

Query  283  HKPMVSESANKALRSMGFADAKRGRKQTLHSFRGTFRSLCDTHQDKHNASFEIKEAVLYH  342
            H P+V ES NKALRSMGFAD KRGRKQT+HSFRGTFRSLC+T Q  HNASFEIKEAVL H
Sbjct  185  HSPLVMESLNKALRSMGFADEKRGRKQTIHSFRGTFRSLCNTYQSEHNASFEIKEAVLDH  244

Query  343  RIGNNVTQAYLHKAYYVEQMRPLLQWWADYLDELKE  378
            ++GN VT+AYL K  YVEQ+RPLLQWWAD+LD ++E
Sbjct  245  KVGNRVTEAYLYKVEYVEQIRPLLQWWADFLDRVRE  280