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PAthogenisity Island DataBase (PAI DB)

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Homologs of unnamed gene of AF232004

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hopM1
( NP_791202.1 )

type III effector HopM1

NC_004578
(Pseudomonas syringae DC3000)

0.0

2) Psyr_1186
( YP_234278.1 )

type III effector HopM1

NC_007005
(Pseudomonas syringae B728a)

0.0

• Sequence Alignments

1) hopM1 in NC_004578


> AF232004|38|G37|8037794|AAF71501.1|Pseudomonas_syringae_pv._tomato_DC3000|-|40631..42502|-|-|unknown
Length=623

 Score =  925 bits (3506),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 621/622 (99%), Positives = 621/622 (99%), Gaps = 0/622 (0%)

Query  1    MISSRIGGAGGVELSRVNQQHDTVPAQTAHPNAVTAGMNPPLTPDQSGSHATESSSAGAA  60
            MISSRIGGAGGV LSRVNQQHDTVPAQTAHPNAVTAGMNPPLTPDQSGSHATESSSAGAA
Sbjct  1    MISSRIGGAGGVKLSRVNQQHDTVPAQTAHPNAVTAGMNPPLTPDQSGSHATESSSAGAA  60

Query  61   RLNVAARHTQLLQAFKAEHGTAPVSGAPMISSRAALLIGSLLQAEPLPFEVMAEKLSPER  120
            RLNVAARHTQLLQAFKAEHGTAPVSGAPMISSRAALLIGSLLQAEPLPFEVMAEKLSPER
Sbjct  61   RLNVAARHTQLLQAFKAEHGTAPVSGAPMISSRAALLIGSLLQAEPLPFEVMAEKLSPER  120

Query  121  YQLKQFQGSDLQQRLEKFAQPGQIPDKAEVGQLIKGFAQSVADQLEHFQLMHDASPATVG  180
            YQLKQFQGSDLQQRLEKFAQPGQIPDKAEVGQLIKGFAQSVADQLEHFQLMHDASPATVG
Sbjct  121  YQLKQFQGSDLQQRLEKFAQPGQIPDKAEVGQLIKGFAQSVADQLEHFQLMHDASPATVG  180

Query  181  QHAKADKATLAVSQTALGEYAGRASKAIGEGLSNSIASLDEHISALDLTLQDAEQGNKES  240
            QHAKADKATLAVSQTALGEYAGRASKAIGEGLSNSIASLDEHISALDLTLQDAEQGNKES
Sbjct  181  QHAKADKATLAVSQTALGEYAGRASKAIGEGLSNSIASLDEHISALDLTLQDAEQGNKES  240

Query  241  LHADRQALVDAKTTLVGLHADFVKSPEAKRLASVAAHTQLDNVVSDLVTARNTVGGWKGA  300
            LHADRQALVDAKTTLVGLHADFVKSPEAKRLASVAAHTQLDNVVSDLVTARNTVGGWKGA
Sbjct  241  LHADRQALVDAKTTLVGLHADFVKSPEAKRLASVAAHTQLDNVVSDLVTARNTVGGWKGA  300

Query  301  GPIVAAAVPQFLSSMTHLGYVRLSTSDKLRDTIPETSSDANMLKASIIGMVAGIAHETVN  360
            GPIVAAAVPQFLSSMTHLGYVRLSTSDKLRDTIPETSSDANMLKASIIGMVAGIAHETVN
Sbjct  301  GPIVAAAVPQFLSSMTHLGYVRLSTSDKLRDTIPETSSDANMLKASIIGMVAGIAHETVN  360

Query  361  SVVKPMFQAALQKTGLNERLNMVPMKAVDTNTVIPDPFELKSEHGELVKKTPEEVAQDKA  420
            SVVKPMFQAALQKTGLNERLNMVPMKAVDTNTVIPDPFELKSEHGELVKKTPEEVAQDKA
Sbjct  361  SVVKPMFQAALQKTGLNERLNMVPMKAVDTNTVIPDPFELKSEHGELVKKTPEEVAQDKA  420

Query  421  FVKSERALLNQKKVQGSSTHPVGELMAYSAFGGSQAVRQMLNDVHQINGQTLSARalasg  480
            FVKSERALLNQKKVQGSSTHPVGELMAYSAFGGSQAVRQMLNDVHQINGQTLSARALASG
Sbjct  421  FVKSERALLNQKKVQGSSTHPVGELMAYSAFGGSQAVRQMLNDVHQINGQTLSARALASG  480

Query  481  fggavsassQTLLQLKSNYVDPQGRKIPVFTPDRAESdlkkdllkgmdlREPSVRTTFYS  540
            FGGAVSASSQTLLQLKSNYVDPQGRKIPVFTPDRAESDLKKDLLKGMDLREPSVRTTFYS
Sbjct  481  FGGAVSASSQTLLQLKSNYVDPQGRKIPVFTPDRAESDLKKDLLKGMDLREPSVRTTFYS  540

Query  541  KALSGIQSSALTSALPPVTAQAEGASGTLSAGAILRNMALAATGSVSYLSTLYTNQSVTa  600
            KALSGIQSSALTSALPPVTAQAEGASGTLSAGAILRNMALAATGSVSYLSTLYTNQSVTA
Sbjct  541  KALSGIQSSALTSALPPVTAQAEGASGTLSAGAILRNMALAATGSVSYLSTLYTNQSVTA  600

Query  601  eakalkaagmggaTPMLDRTET  622
            EAKALKAAGMGGATPMLDRTET
Sbjct  601  EAKALKAAGMGGATPMLDRTET  622

2) Psyr_1186 in NC_007005


> AF232004|38|G37|8037794|AAF71501.1|Pseudomonas_syringae_pv._tomato_DC3000|-|40631..42502|-|-|unknown
Length=623

 Score =  679 bits (2568),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 404/622 (65%), Positives = 534/622 (86%), Gaps = 0/622 (0%)

Query  1    MIGTRVGGSGSTEIVQANQPQPSAAVAQAHPHAVSPSSNPPLTasqsaaqapessaagaa  60
            MI++R+GG+G+  + + NQ + + +   AHP+AV+++ NPPLT+ QS+++A ESS+AGAA
Sbjct  1    MISSRIGGAGGVKLSRVNQQHDTVPAQTAHPNAVTAGMNPPLTPDQSGSHATESSSAGAA  60

Query  61   RLPVAPRHLPTLEKFRAEQPTVQGTSTPTISANAALLIGSLLQSEKLPFEVMAARLSPER  120
            RL VA+RH   L+ F+AE+ T   +++P IS+ AALLIGSLLQ+E LPFEVMA +LSPER
Sbjct  61   RLNVAARHTQLLQAFKAEHGTAPVSGAPMISSRAALLIGSLLQAEPLPFEVMAEKLSPER  120

Query  121  YALQQFHGSDLQQMLGRFAEPGHLPGKAETEQLIKGFARSLADQLEHFQLMHDATAEAFG  180
            Y L+QF+GSDLQQ L +FA+PG++P+KAE  QLIKGFA+S+ADQLEHFQLMHDA++ + G
Sbjct  121  YQLKQFQGSDLQQRLEKFAQPGQIPDKAEVGQLIKGFAQSVADQLEHFQLMHDASPATVG  180

Query  181  PGGLRDRNTLAVSQAALGEYAGRASKSIEAGLNHSLAVLDERIAALDSQLEGATEDSRPV  240
              +  D+ TLAVSQ+ALGEYAGRASK+I  GL++S+A LDE+I+ALD  L++A ++++  
Sbjct  181  QHAKADKATLAVSQTALGEYAGRASKAIGEGLSNSIASLDEHISALDLTLQDAEQGNKES  240

Query  241  LLMDRQALETARAMLSDLHVDFCKSPEAKRLSAVAAHTQMDALIDKLNVDRSSVGGWKGI  300
            L  DRQAL  A++ L +LH DF KSPEAKRL++VAAHTQ+D ++  L   R++VGGWKG 
Sbjct  241  LHADRQALVDAKTTLVGLHADFVKSPEAKRLASVAAHTQLDNVVSDLVTARNTVGGWKGA  300

Query  301  GPIVAAAVPQFMVSMLHLGYIRTATSDAMKDAVPEKSADASMKRALAVGLTAGVAHEGVT  360
            GPIVAAAVPQF+ SM HLGY+R +TSD ++D++PE S+DA+M +A  +G+ AG+AHE V 
Sbjct  301  GPIVAAAVPQFLSSMTHLGYVRLSTSDKLRDTIPETSSDANMLKASIIGMVAGIAHETVN  360

Query  361  NLLKPMVQAGFQKAGLNERLNMVPLKGIDTDSVIPDPFELKNDNGALVRKTPEEAAEDKA  420
            +++KPM QA++QK+GLNERLNMVP+K++DT++VIPDPFELK+++G LV+KTPEE A+DKA
Sbjct  361  SVVKPMFQAALQKTGLNERLNMVPMKAVDTNTVIPDPFELKSEHGELVKKTPEEVAQDKA  420

Query  421  FVASERAVLNQKKVQVSSTHPLGEMIPYGAFGGGQAVRQMLNDFNLLNGQTLSARAVTSG  480
            FV SERA+LNQKKVQ SSTHP+GE+++Y+AFGG+QAVRQMLND + +NGQTLSARA++SG
Sbjct  421  FVKSERALLNQKKVQGSSTHPVGELMAYSAFGGSQAVRQMLNDVHQINGQTLSARALASG  480

Query  481  IAGAISATTQTIAQLNSTYVDPRGRKIPVFTPDRANadlgkdlakgldlREPAVRTAFYS  540
            ++GA+SA++QT+ QL+S YVDP+GRKIPVFTPDRA++DL KDL KG+DLREP+VRT+FYS
Sbjct  481  FGGAVSASSQTLLQLKSNYVDPQGRKIPVFTPDRAESDLKKDLLKGMDLREPSVRTTFYS  540

Query  541  KAVSGVQSAALNGALPSVAVQPQGASGTLSAGNIMRNMALAATGSVSYLSTLYANQSVTA  600
            KA+SG+QS+AL +ALP+V+ Q++GASGTLSAG I+RNMALAATGSVSYLSTLY+NQSVTA
Sbjct  541  KALSGIQSSALTSALPPVTAQAEGASGTLSAGAILRNMALAATGSVSYLSTLYTNQSVTA  600

Query  601  EAKALKEAGMGGATPMVARTET  622
            EAKALK AGMGGATPM+ RTET
Sbjct  601  EAKALKAAGMGGATPMLDRTET  622