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Homologs of avrF gene of AY597278

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) avrF
( YP_273526.1 )

type III chaperone protein AvrF

NC_005773
(Pseudomonas syringae 1448A)

4e-47

2) Psyr_1187
( YP_234279.1 )

hypothetical protein

NC_007005
(Pseudomonas syringae B728a)

5e-47

3) shcE
( NP_791203.1 )

type III chaperone ShcE

NC_004578
(Pseudomonas syringae DC3000)

5e-47

4) dspF
( YP_005804063.1 )

Hrp secreted pathogenicity-related protein

NC_017390
(Erwinia pyrifoliae DSM 12163)

4e-20

5) dspF
( YP_002650046.1 )

hrp/hrc type III secretion system-Hrp elicitor/effector region-dsp protein B/F

NC_012214
(Erwinia pyrifoliae Ep1/96)

4e-20

6) dspF
( YP_001906491.1 )

protein DspF

NC_010694
(Erwinia tasmaniensis Et1/99)

8e-20

7) dspF
( YP_005818283.1 )

hrp/hrc Type III secretion system-Hrp elicitor/effector region-dsp protein B/F

NC_017445
(Erwinia sp. Ejp617)

9e-20

8) dspF
( YP_003539938.1 )

avirulence protein

NC_013971
(Erwinia amylovora ATCC 49946)

1e-19

9) dspF
( YP_003529916.1 )

Hrp secreted pathogenicity-like protein

NC_013961
(Erwinia amylovora CFBP1430)

1e-19

10) PSEBR_a5377
( YP_004356887.1 )

type III chaperone protein

NC_015379
(Pseudomonas brassicacearum NFM421)

5e-18

11) dspF
( YP_003883117.1 )

protein DspF

NC_014500
(Dickeya dadantii 3937)

4e-16

• Sequence Alignments

1) avrF in NC_005773


> AY597278|41|G41|51103073|AAT96219.1|Pseudomonas_viridiflava_PNA3.3a|-|41125..41514|avrF|-|AvrF
Length=129

 Score =  180 bits (668),  Expect = 4e-47, Method: Compositional matrix adjust.
 Identities = 98/129 (76%), Positives = 118/129 (92%), Gaps = 0/129 (0%)

Query  1    MRNPTPDFARFINALGVQLGTSLALQNGVCALYDGQNNEAAVIELPEHSEMVVFHCRVGR  60
            M N+  DF+R+I++LG QLGTSL+ QNGVCALYD+Q+NEAAVIE+P+HSEMV+FHCRVGR
Sbjct  1    MNNSPTDFSRLIKSLGAQLGTSLTAQNGVCALYDSQDNEAAVIEMPDHSEMVIFHCRVGR  60

Query  61   CPERSTDLQRLLSLNFDVARLHGCWFAIDQGDVRLCAQRELASLDEPAFCDVTRGFISQA  120
             P+R++DLQ+LLSLNFDVAR+HG WFA+DQGDVRLCAQRELA LDE+ FCD +RGFI QA
Sbjct  61   SPDRAADLQKLLSLNFDVARMHGSWFAVDQGDVRLCAQRELAVLDEAQFCDTARGFIIQA  120

Query  121  REARAFLQA  129
            REARA+LQA
Sbjct  121  REARALLQA  129

2) Psyr_1187 in NC_007005


> AY597278|41|G41|51103073|AAT96219.1|Pseudomonas_viridiflava_PNA3.3a|-|41125..41514|avrF|-|AvrF
Length=129

 Score =  180 bits (666),  Expect = 5e-47, Method: Compositional matrix adjust.
 Identities = 104/129 (81%), Positives = 117/129 (91%), Gaps = 0/129 (0%)

Query  1    MNTSQHEFSRFITALGAQLGTSLTWQNGVCALYDSQDNEAAVIELPEHSEMVIFHCRVGR  60
            MN S  +FSR+I +LGAQLGTSLT QNGVCALYDSQDNEAAVIE+P+HSEMVIFHCRVGR
Sbjct  1    MNNSPTDFSRLIKSLGAQLGTSLTAQNGVCALYDSQDNEAAVIEMPDHSEMVIFHCRVGR  60

Query  61   CPERSADLQQLLSLNFDVARLHGCWFAVDQGDVRLCAQRELVSLDEPAFCDVTRGFIAQA  120
             P+R+ADLQ+LLSLNFDVAR+HG WFAVDQGDVRLCAQREL  LDE+ FCD +RGFI QA
Sbjct  61   SPDRAADLQKLLSLNFDVARMHGSWFAVDQGDVRLCAQRELAVLDEAQFCDTARGFIIQA  120

Query  121  REARAFLHA  129
            REARA+L+A
Sbjct  121  REARALLQA  129

3) shcE in NC_004578


> AY597278|41|G41|51103073|AAT96219.1|Pseudomonas_viridiflava_PNA3.3a|-|41125..41514|avrF|-|AvrF
Length=129

 Score =  180 bits (666),  Expect = 5e-47, Method: Compositional matrix adjust.
 Identities = 101/129 (79%), Positives = 118/129 (92%), Gaps = 0/129 (0%)

Query  3    MKTSQPDFARFINSLGAQLGTSLTLQNGVCALYDGQNNEAAIIELPEHSEMVIFHCRIGR  62
            M+ S  DF+R+I+SLGAQLGTSLT QNGVCALYD+Q+NEAA+IE+P+HSEMVIFHCR+GR
Sbjct  1    MNNSPTDFSRLIKSLGAQLGTSLTAQNGVCALYDSQDNEAAVIEMPDHSEMVIFHCRVGR  60

Query  63   CPERAPDLLRLLSLNFDVARLHGCWFAVDQGDVRLCAQRELASLDEPAFCDVTRGFISQA  122
             P+RA+DL +LLSLNFDVAR+HG WFAVDQGDVRLCAQRELA LDE+ FCD +RGFI QA
Sbjct  61   SPDRAADLQKLLSLNFDVARMHGSWFAVDQGDVRLCAQRELAVLDEAQFCDTARGFIIQA  120

Query  123  REARAFLQA  131
            REARA+LQA
Sbjct  121  REARALLQA  129

4) dspF in NC_017390


> AY597278|41|G41|51103073|AAT96219.1|Pseudomonas_viridiflava_PNA3.3a|-|41125..41514|avrF|-|AvrF
Length=129

 Score = 91.0 bits (326),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 55/130 (43%), Positives = 87/130 (67%), Gaps = 3/130 (2%)

Query  1    MTASQQQVERFLQYFSAGCKTPIHLKDGVCALYNEQNEEAAVLEIPEHSDSLLLHCRIIE  60
            M  S  +  R+++ ++A   T++  ++GVCALY+ Q++EAAV+E+P+HS+ +++HCR + 
Sbjct  1    MNNSPTDFSRLIKSLGAQLGTSLTAQNGVCALYDSQDNEAAVIEMPDHSEMVIFHCR-VG  59

Query  61   TDPQTSITLYSMLLQLNFEMAAMRGCWLALDELHNVRLCFQQPLEHLDEASFSDIISGFI  120
              P+ +  L   LL LNF++A M+G W+A+D+  +VRLC Q+ L  LDEA F D   GFI
Sbjct  60   RSPDRAADL-QKLLSLNFDVARMHGSWFAVDQ-GDVRLCAQRELAVLDEAQFCDTARGFI  117

Query  121  EQAAEVREYI  130
             QA E R  +
Sbjct  118  IQAREARALL  127

5) dspF in NC_012214


> AY597278|41|G41|51103073|AAT96219.1|Pseudomonas_viridiflava_PNA3.3a|-|41125..41514|avrF|-|AvrF
Length=129

 Score = 91.0 bits (326),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 55/130 (43%), Positives = 87/130 (67%), Gaps = 3/130 (2%)

Query  1    MTASQQQVERFLQYFSAGCKTPIHLKDGVCALYNEQNEEAAVLEIPEHSDSLLLHCRIIE  60
            M  S  +  R+++ ++A   T++  ++GVCALY+ Q++EAAV+E+P+HS+ +++HCR + 
Sbjct  1    MNNSPTDFSRLIKSLGAQLGTSLTAQNGVCALYDSQDNEAAVIEMPDHSEMVIFHCR-VG  59

Query  61   TDPQTSITLYSMLLQLNFEMAAMRGCWLALDELHNVRLCFQQPLEHLDEASFSDIISGFI  120
              P+ +  L   LL LNF++A M+G W+A+D+  +VRLC Q+ L  LDEA F D   GFI
Sbjct  60   RSPDRAADL-QKLLSLNFDVARMHGSWFAVDQ-GDVRLCAQRELAVLDEAQFCDTARGFI  117

Query  121  EQAAEVREYI  130
             QA E R  +
Sbjct  118  IQAREARALL  127

6) dspF in NC_010694


> AY597278|41|G41|51103073|AAT96219.1|Pseudomonas_viridiflava_PNA3.3a|-|41125..41514|avrF|-|AvrF
Length=129

 Score = 89.7 bits (321),  Expect = 8e-20, Method: Compositional matrix adjust.
 Identities = 54/130 (42%), Positives = 88/130 (68%), Gaps = 3/130 (2%)

Query  1    MTSSQQRVEKLLQHFSAGCKTPLNLKEGVCALYNEQGEEVAVLEVPEHSDSLLLHCQLVE  60
            M +S     +L++ ++A   T+L  ++GVCALY+ Q++E AV+E+P+HS+ +++HC+ V 
Sbjct  1    MNNSPTDFSRLIKSLGAQLGTSLTAQNGVCALYDSQDNEAAVIEMPDHSEMVIFHCR-VG  59

Query  61   TDPQASIALYPMLLQLNFEMAAMRGCWLALDELHKVRLCFQQPLAQLGEAEFSHVVSGFI  120
              P+ +  L   LL LNF++A M+G W+A+D+   VRLC Q+ LA L+EA+F +   GFI
Sbjct  60   RSPDRAADL-QKLLSLNFDVARMHGSWFAVDQ-GDVRLCAQRELAVLDEAQFCDTARGFI  117

Query  121  EQAAEVREFI  130
             QA E R ++
Sbjct  118  IQAREARALL  127

7) dspF in NC_017445


> AY597278|41|G41|51103073|AAT96219.1|Pseudomonas_viridiflava_PNA3.3a|-|41125..41514|avrF|-|AvrF
Length=129

 Score = 89.7 bits (321),  Expect = 9e-20, Method: Compositional matrix adjust.
 Identities = 54/130 (42%), Positives = 87/130 (67%), Gaps = 3/130 (2%)

Query  1    MTASQQQVERFLQYFSAGCKTPIHLKDGVCALYNEQNEEAAVLEIPEHSDSLLLHCQIIE  60
            M  S  +  R+++ ++A   T++  ++GVCALY+ Q++EAAV+E+P+HS+ +++HC+ + 
Sbjct  1    MNNSPTDFSRLIKSLGAQLGTSLTAQNGVCALYDSQDNEAAVIEMPDHSEMVIFHCR-VG  59

Query  61   TDPQTSITLYSMLLQLNFEMAAMRGCWLALDELHNVRLCFQQPLEHLDEASFSDIVSGFI  120
              P+ +  L   LL LNF++A M+G W+A+D+  +VRLC Q+ L  LDEA F D   GFI
Sbjct  60   RSPDRAADL-QKLLSLNFDVARMHGSWFAVDQ-GDVRLCAQRELAVLDEAQFCDTARGFI  117

Query  121  EQAAEVREYI  130
             QA E R  +
Sbjct  118  IQAREARALL  127

8) dspF in NC_013971


> AY597278|41|G41|51103073|AAT96219.1|Pseudomonas_viridiflava_PNA3.3a|-|41125..41514|avrF|-|AvrF
Length=129

 Score = 89.1 bits (319),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 55/130 (43%), Positives = 87/130 (67%), Gaps = 3/130 (2%)

Query  1    MTSSQQRVERFLQYFSAGCKTPIHLKDGVCALYNEQDEEAAVLEVPQHSDSLLLHCRIIE  60
            M +S     R+++ ++A   T++  ++GVCALY+ QD+EAAV+E+P+HS+ +++HCR + 
Sbjct  1    MNNSPTDFSRLIKSLGAQLGTSLTAQNGVCALYDSQDNEAAVIEMPDHSEMVIFHCR-VG  59

Query  61   ADPQTSITLYSMLLQLNFEMAAMRGCWLALDELHNVRLCFQQSLEHLDEASFSDIVSGFI  120
              P+ +  L   LL LNF++A M+G W+A+D+  +VRLC Q+ L  LDEA F D   GFI
Sbjct  60   RSPDRAADL-QKLLSLNFDVARMHGSWFAVDQ-GDVRLCAQRELAVLDEAQFCDTARGFI  117

Query  121  EHAAEVREYI  130
             +A E R  +
Sbjct  118  IQAREARALL  127

9) dspF in NC_013961


> AY597278|41|G41|51103073|AAT96219.1|Pseudomonas_viridiflava_PNA3.3a|-|41125..41514|avrF|-|AvrF
Length=129

 Score = 89.1 bits (319),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 55/130 (43%), Positives = 87/130 (67%), Gaps = 3/130 (2%)

Query  1    MTSSQQRVERFLQYFSAGCKTPIHLKDGVCALYNEQDEEAAVLEVPQHSDSLLLHCRIIE  60
            M +S     R+++ ++A   T++  ++GVCALY+ QD+EAAV+E+P+HS+ +++HCR + 
Sbjct  1    MNNSPTDFSRLIKSLGAQLGTSLTAQNGVCALYDSQDNEAAVIEMPDHSEMVIFHCR-VG  59

Query  61   ADPQTSITLYSMLLQLNFEMAAMRGCWLALDELHNVRLCFQQSLEHLDEASFSDIVSGFI  120
              P+ +  L   LL LNF++A M+G W+A+D+  +VRLC Q+ L  LDEA F D   GFI
Sbjct  60   RSPDRAADL-QKLLSLNFDVARMHGSWFAVDQ-GDVRLCAQRELAVLDEAQFCDTARGFI  117

Query  121  EHAAEVREYI  130
             +A E R  +
Sbjct  118  IQAREARALL  127

10) PSEBR_a5377 in NC_015379


> AY597278|41|G41|51103073|AAT96219.1|Pseudomonas_viridiflava_PNA3.3a|-|41125..41514|avrF|-|AvrF
Length=129

 Score = 84.2 bits (300),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 56/120 (47%), Positives = 85/120 (71%), Gaps = 3/120 (2%)

Query  9    RLISALAEHLHADLQLEGGVCALYDASNREAVVIELPGHGDVAILHSSID-VPAHAPGLH  67
            RLI +L+ +L + L  + GVCALYD+ + EA VIE+P+H+++ I+H  ++  P +A++L+
Sbjct  10   RLIKSLGAQLGTSLTAQNGVCALYDSQDNEAAVIEMPDHSEMVIFHCRVGRSPDRAADLQ  69

Query  68   KRllelnfrldllGGSWLALDDKSSVRLCAHCPLAMLDEVQFCHWVVGFIAQVGDVRARL  127
            K LL LNF +  + GSW+A+D+ + VRLCA+  LA+LDE QFC+   GFI Q  + RA L
Sbjct  70   K-LLSLNFDVARMHGSWFAVDQ-GDVRLCAQRELAVLDEAQFCDTARGFIIQAREARALL  127

11) dspF in NC_014500


> AY597278|41|G41|51103073|AAT96219.1|Pseudomonas_viridiflava_PNA3.3a|-|41125..41514|avrF|-|AvrF
Length=129

 Score = 77.6 bits (275),  Expect = 4e-16, Method: Compositional matrix adjust.
 Identities = 45/109 (42%), Positives = 77/109 (71%), Gaps = 3/109 (2%)

Query  38   LMLNNGICVLNGADGREAAVIEVPAHSDNLLLHCQVVSLKGEDRLAVYRLMLLLNFEMAA  97
            L  +NG+C L ++++ EAAVIE+P HS+ +++HC+V   ++ DR A  + +L LNF++A 
Sbjct  23   LTAQNGVCALYDSQDNEAAVIEMPDHSEMVIFHCRVG--RSPDRAADLQKLLSLNFDVAR  80

Query  98   MRGCWLALDEYDNLRLCSQYPLDKLDEAGFSALMNGYIRQVEETRTFIE  146
            M+G W+A+D+ +++RLC+Q  L  LDEA F     G+I Q  E+R++++
Sbjct  81   MHGSWFAVDQ-GDVRLCAQRELAVLDEAQFCDTARGFIIQAREARALLQ  128