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PAthogenisity Island DataBase (PAI DB)

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Homologs of tciR1 gene of AF346500

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) tciR1
( NP_928300.1 )

hypothetical protein

NC_005126
(Photorhabdus luminescens TTO1)

1e-133

2) tciR2
( NP_928297.1 )

hypothetical protein

NC_005126
(Photorhabdus luminescens TTO1)

5e-114

• Sequence Alignments

1) tciR1 in NC_005126


> AF346500|42|G39|27479678|AAO17205.1|Photorhabdus_luminescens_W14|-|59634..60566|tciR1|-|TciR1
Length=310

 Score =  468 bits (1765),  Expect = 1e-133, Method: Compositional matrix adjust.
 Identities = 285/303 (95%), Positives = 296/303 (98%), Gaps = 0/303 (0%)

Query  1    MIFCSKQLKYFMESAKKESFTLAADTLCITPSPLSRLVYQLEQRVGCQLFERLPGKTKLT  60
            MIFCSKQLKYFMESAKKESFTLAADTLCITPSPLSRLVYQLEQRVGCQLFERLPGKTKLT
Sbjct  8    MIFCSKQLKYFMESAKKESFTLAADTLCITPSPLSRLVYQLEQRVGCQLFERLPGKTKLT  67

Query  61   EEGRALYQELLPCYERIQKVEDNWNCRRNCKSSSRDKLVIGTSGEYVNKISTVVKRAVQR  120
            EEG+ALYQELLPCYERIQKVEDNWNCRRN K S+RDKLVIGTSGEYVNKISTVVKRAVQR
Sbjct  68   EEGKALYQELLPCYERIQKVEDNWNCRRNYKLSNRDKLVIGTSGEYVNKISTVVKRAVQR  127

Query  121  YHYRDICIINNFLIDDLIRQDAVFSSLMKEDITVYVTTECYPDNDDIIRIDGAYQKLSLA  180
            YHYRDICIINNFLIDDLIRQDAVFSSL+K DITVYVTTECYPDNDDIIRIDGAYQKLSLA
Sbjct  128  YHYRDICIINNFLIDDLIRQDAVFSSLIKGDITVYVTTECYPDNDDIIRIDGAYQKLSLA  187

Query  181  VSNDILEPESHVDEIIYSFPLVQHNSAFLKQCDNFMPLNYPPEYQNLALLTIPDFTNRLE  240
            VSNDILE+ESH DE+IYSFPLVQHNSAFLKQCDNFMPLNY PEYQNLALLT+PDFTNRL+
Sbjct  188  VSNDILEAESHADEVIYSFPLVQHNSAFLKQCDNFMPLNYLPEYQNLALLTVPDFTNRLD  247

Query  241  LIKAGVAISLMTPNEMRYSAHIDKGITFLNFESYPEPSVRYCAYALRNKYKEPLNSLISD  300
            L+KAGVAISLMTPNEMRYS+HIDK+I+FLNFES P PSVRYCAYALRNKYKEPLNSLISD
Sbjct  248  LVKAGVAISLMTPNEMRYSTHIDKSIAFLNFESRPAPSVRYCAYALRNKYKEPLNSLISD  307

Query  301  LIF  303
            LIF
Sbjct  308  LIF  310

2) tciR2 in NC_005126


> AF346500|42|G39|27479678|AAO17205.1|Photorhabdus_luminescens_W14|-|59634..60566|tciR1|-|TciR1
Length=310

 Score =  403 bits (1516),  Expect = 5e-114, Method: Compositional matrix adjust.
 Identities = 232/303 (77%), Positives = 280/303 (93%), Gaps = 0/303 (0%)

Query  1    MMLFCSKNLKYFMESAKRESFTLAADTLCITPSPLSRIIYQLEQRVGCQLFERLPGRTKL  60
            +M+FCSK+LKYFMESAK+ESFTLAADTLCITPSPLSR++YQLEQRVGCQLFERLPG+TKL
Sbjct  7    VMIFCSKQLKYFMESAKKESFTLAADTLCITPSPLSRLVYQLEQRVGCQLFERLPGKTKL  66

Query  61   TEEGMALYQELLPCYERMQRVEDNWHYRRSERLTNAGKLIIGTSGEYINKISAVIKRAVQ  120
            TEEG ALYQELLPCYER+Q+VEDNW+ RR+ +L+N +KL+IGTSGEY+NKIS+V+KRAVQ
Sbjct  67   TEEGKALYQELLPCYERIQKVEDNWNCRRNYKLSNRDKLVIGTSGEYVNKISTVVKRAVQ  126

Query  121  RYHYRDIYIKNNFLVDDSARKEAIFSSLMKEDITVYVTTEHYPDNDNIIRIDGTYQVLRL  180
            RYHYRDI I NNFL+DD  R++A+FSSL+K DITVYVTTE YPDND+IIRIDG+YQ L L
Sbjct  127  RYHYRDICIINNFLIDDLIRQDAVFSSLIKGDITVYVTTECYPDNDDIIRIDGAYQKLSL  186

Query  181  AIANDILGSESHADDIISTLPLAQHNSAFLKQCDGFIPLNCLPEYQNLTLLTVPDFSNRL  240
            A++NDIL +ESHAD++I ++PL QHNSAFLKQCD F+PLN LPEYQNL+LLTVPDF+NRL
Sbjct  187  AVSNDILEAESHADEVIYSFPLVQHNSAFLKQCDNFMPLNYLPEYQNLALLTVPDFTNRL  246

Query  241  DLVRSGIAISLMTPNEAICSADLHKGITFLNFKSYPTPSVKYCAYTLRHKYKEPLNLLIS  300
            DLV++G+AISLMTPNE   S++++K+I+FLNF S P+PSV+YCAY+LR+KYKEPLN LIS
Sbjct  247  DLVKAGVAISLMTPNEMRYSTHIDKSIAFLNFESRPAPSVRYCAYALRNKYKEPLNSLIS  306

Query  301  DLI  303
            DLI
Sbjct  307  DLI  309