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PAthogenisity Island DataBase (PAI DB)

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Homologs of unnamed gene of AY597278

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) Psyr_1186
( YP_234278.1 )

type III effector HopM1

NC_007005
(Pseudomonas syringae B728a)

1e-173

2) hopM1
( NP_791202.1 )

type III effector HopM1

NC_004578
(Pseudomonas syringae DC3000)

6e-173

• Sequence Alignments

1) Psyr_1186 in NC_007005


> AY597278|42|G42|51103074|AAT96220.1|Pseudomonas_viridiflava_PNA3.3a|-|41593..44073|-|-|HopPtoM-like 
protein
Length=826

 Score =  602 bits (2276),  Expect = 1e-173, Method: Compositional matrix adjust.
 Identities = 369/676 (55%), Positives = 535/676 (80%), Gaps = 11/676 (1%)

Query  1    MIGTRVGGSGSTEIVQANQPQPSAAVAQAHPHAVSPSSNPPLTasqsaaqapessaagaa  60
            MI +RVGGSG  ++V     + +++++ AHP+AV+PS+NPPL + Q + +   S  + AA
Sbjct  1    MINSRVGGSGDIQMVAVRTEEGNPSITSAHPNAVTPSNNPPLLPRQMGQHLEPSLESHAA  60

Query  61   RLPVAPRHLPTLEKFRAEQPTVQGTSTPTISANAALLIGSLLQ--------SEKLPFEVM  112
             L +A RH   L  F+AEQ++ ++T +P +SA+AALLIG++L+        + K+ FEVM
Sbjct  61   NLGIALRHTELLATFQAEQASTRSTDAPQVSAHAALLIGGMLEEANGHASETGKVGFEVM  120

Query  113  AARLSPERYALQQFHGSDLQQMLGRFAEPGHLPGKAETEQLIKGFARSLADQLEHFQLMH  172
            A RL   + AL+ F++SD++ +L ++++ +++P+KAE  QL+KG A ++ADQLEHFQLMH
Sbjct  121  AERLCGPHLALESFQSSDVKLLLEKLTNKDEIPDKAEVGQLLKGHAGAIADQLEHFQLMH  180

Query  173  DATAEAFGPGGLRDRNTLAVSQAALGEYAGRASKSIEAGLNHSLAVLDERIAALDSQLEG  232
            +A++   G  +  DR+T+ VSQAALGEYAGR SK+I + L++  A LD R+A +D QLEG
Sbjct  181  NASSVHQGECSAPDRKTFEVSQAALGEYAGRVSKAISSVLSEKTADLDKRLADVDKQLEG  240

Query  233  ATEDS-RPVLLMDRQALETARAMLSDLHVDFCKSPEAKRLSAVAAHTQMDALIDKLNVDR  291
             +E++ ++ LL ++++L  A++ML+D++ DF KSP+AK+L +VAAH++ DA +  LN DR
Sbjct  241  MAEGGEKSRLLTQKETLGEAKTMLADIQNDFSKSPQAKHLKSVAAHARFDAQLKELNADR  300

Query  292  SSVGGWKGIGPIVAAAVPQFMVSMLHLGYIRTATSDAMKDAVPEKSADASMKRALAVGLT  351
            +++G  +G G ++AAA+PQF+ SM HLG+IR+AT+D  + AVP  S+DASM  A  +GL 
Sbjct  301  AGMGFLQGSGRVIAAAIPQFLSSMTHLGFIRSATNDEFRAAVPGSSSDASMLEATVIGLV  360

Query  352  AGVAHEGVTNLLKPMVQAGFQKAGLNERLNMVPLKGIDTDSVIPDPFELKNDNGALVRKT  411
            AG+AHEGVTNL+KPMVQ+G+Q +GL+ RL M PLKG+DT+SVIPDP+E+K+++G +V+K+
Sbjct  361  AGIAHEGVTNLVKPMVQSGLQASGLDKRLGMAPLKGVDTESVIPDPLEFKSQDGVMVKKS  420

Query  412  PEEAAEDKAFVASERAVLNQKKVQVSSTHPLGEMIPYGAFGGGQAVRQMLNDFNLLNGQT  471
             EE + +KA V ++RAV++QKKVQVSSTHPLGE+IPY +FGGGQA+RQ+L+DFN +NGQT
Sbjct  421  DEELTAEKAQVKAQRAVFEQKKVQVSSTHPLGELIPYMSFGGGQAIRQLLHDFNQINGQT  480

Query  472  LSARAVTSGIAGAISATTQTIAQLNSTYVDPRGRKIPVFTPDRANadlgkdlakgldlRE  531
            ++ARA++SG+AGA+SA++Q++ Q+++TY DP+GR+IPVFT D+A ++LGK+LAKGLD R+
Sbjct  481  VTARALASGMAGAVSASAQALYQMKATYTDPQGRQIPVFTTDKATSELGKELAKGLDPRD  540

Query  532  PAVRTAFYSKAVSGVQSAALNGALPSVAVQPQGASGTLSAGNIMRNMALAATGSVSYLST  591
            ++VRT+FYSKAVSG+QSAAL + LP++A  + G ++ LSAG I  NMALAA GSVSYLS+
Sbjct  541  ATVRTSFYSKAVSGIQSAALTAELPAIA--AAGVNSGLSAGRIAGNMALAALGSVSYLSS  598

Query  592  LYANQSVTAEAKALKEAGMGGATPMVARTETALSNIRHPDRASLPHTFQPDTLGGVPRAV  651
            LYANQSVTAE+KALK AG GGATP++ RTE A++N+R+P+R SLPHTF +D L+G+PR  
Sbjct  599  LYANQSVTAEGKALKAAGEGGATPILERTEVAFTNVRRPNRESLPHTFSSDQLAGLPRMA  658

Query  652  ENAYHMARGALQLPTQ  667
            EN+YH ARG LQ P+Q
Sbjct  659  ENTYHRARGVLQAPSQ  674

2) hopM1 in NC_004578


> AY597278|42|G42|51103074|AAT96220.1|Pseudomonas_viridiflava_PNA3.3a|-|41593..44073|-|-|HopPtoM-like 
protein
Length=826

 Score =  600 bits (2268),  Expect = 6e-173, Method: Compositional matrix adjust.
 Identities = 382/700 (55%), Positives = 559/700 (80%), Gaps = 11/700 (1%)

Query  1    MISSRIGGAGGVELSRVNQQHDTVPAQTAHPNAVTAGMNPPLTPDQSGSHATESSSAGAA  60
            MI+SR+GG+G++++  V  +++  +  +AHPNAVT++ NPPL P Q G H   S  + AA
Sbjct  1    MINSRVGGSGDIQMVAVRTEEGNPSITSAHPNAVTPSNNPPLLPRQMGQHLEPSLESHAA  60

Query  61   RLNVAARHTQLLQAFKAEHGTAPVSGAPMISSRAALLIGSLLQ--------AEPLPFEVM  112
             L +A RHT+LL +F+AE++++  ++AP +S++AALLIG++L+        +  + FEVM
Sbjct  61   NLGIALRHTELLATFQAEQASTRSTDAPQVSAHAALLIGGMLEEANGHASETGKVGFEVM  120

Query  113  AEKLSPERYQLKQFQGSDLQQRLEKFAQPGQIPDKAEVGQLIKGFAQSVADQLEHFQLMH  172
            AE+L   +  L  FQ+SD++  LEK+++ ++IPDKAEVGQL+KG A ++ADQLEHFQLMH
Sbjct  121  AERLCGPHLALESFQSSDVKLLLEKLTNKDEIPDKAEVGQLLKGHAGAIADQLEHFQLMH  180

Query  173  DASPATVGQHAKADKATLAVSQTALGEYAGRASKAIGEGLSNSIASLDEHISALDLTLQD  232
            +AS+   G+ + +D+ T+ VSQ+ALGEYAGR SKAI+  LS+  A LD +++ +D  L++
Sbjct  181  NASSVHQGECSAPDRKTFEVSQAALGEYAGRVSKAISSVLSEKTADLDKRLADVDKQLEG  240

Query  233  -AEQGNKESLHADRQALVDAKTTLVGLHADFVKSPEAKRLASVAAHTQLDNVVSDLVTAR  291
             AE G+K  L +++++L +AKT L +++ DF KSP+AK+L SVAAH+++D  + +L + R
Sbjct  241  MAEGGEKSRLLTQKETLGEAKTMLADIQNDFSKSPQAKHLKSVAAHARFDAQLKELNADR  300

Query  292  NTVGGWKGAGPIVAAAVPQFLSSMTHLGYVRLSTSDKLRDTIPETSSDANMLKASIIGMV  351
              +G  +G+G ++AAA+PQFLSSMTHLG++R +T+D +R ++P +SSDA+ML A++IG+V
Sbjct  301  AGMGFLQGSGRVIAAAIPQFLSSMTHLGFIRSATNDEFRAAVPGSSSDASMLEATVIGLV  360

Query  352  AGIAHETVNSVVKPMFQAALQKTGLNERLNMVPMKAVDTNTVIPDPFELKSEHGELVKKT  411
            AGIAHE V ++VKPM Q++LQ +GL+ RL M P+K+VDT++VIPDP+E+KS++G +VKK+
Sbjct  361  AGIAHEGVTNLVKPMVQSGLQASGLDKRLGMAPLKGVDTESVIPDPLEFKSQDGVMVKKS  420

Query  412  PEEVAQDKAFVKSERALLNQKKVQGSSTHPVGELMAYSAFGGSQAVRQMLNDVHQINGQT  471
             EE++ +KA VK++RA+++QKKVQ SSTHP+GEL++Y +FGG+QA+RQ+L+D +QINGQT
Sbjct  421  DEELTAEKAQVKAQRAVFEQKKVQVSSTHPLGELIPYMSFGGGQAIRQLLHDFNQINGQT  480

Query  472  LSARalasgfggavsassQTLLQLKSNYVDPQGRKIPVFTPDRAESdlkkdllkgmdlRE  531
            ++ARALASG +GAVSAS+Q+L Q+K+ Y DPQGR+IPVFT D+A S+L K+L KG+D R+
Sbjct  481  VTARALASGMAGAVSASAQALYQMKATYTDPQGRQIPVFTTDKATSELGKELAKGLDPRD  540

Query  532  PSVRTTFYSKALSGIQSSALTSALPPVTAQAEGASGTLSAGAILRNMALAATGSVSYLST  591
            ++VRT+FYSKA+SGIQS+ALT+ LP+++  A G ++ LSAG I  NMALAA GSVSYLS+
Sbjct  541  ATVRTSFYSKAVSGIQSAALTAELPAIA--AAGVNSGLSAGRIAGNMALAALGSVSYLSS  598

Query  592  LYTNQSVTaeakalkaagmggaTPMLDRTETALNNIRHPNRESLPHTFQKSTLSGIPRVA  651
            LY+NQSVTAE+KALKAAG GGATP+L+RTE A+ N+R+PNRESLPHTF    L+G+PR+A
Sbjct  599  LYANQSVTAEGKALKAAGEGGATPILERTEVAFTNVRRPNRESLPHTFSSDQLAGLPRMA  658

Query  652  ENAYHMGRGALQLPTQMAVDTVRVVDEGVLNAVASAREAL  691
            EN+YH +RG LQ P+Q+AVD +R VD+GV ++ +S ++ L
Sbjct  659  ENTYHRARGVLQAPSQIAVDVLRAVDDGVRSSFSSLQDKL  698