Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of unnamed gene of AY597278

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) shcM
( NP_791201.1 )

type III chaperone ShcM

NC_004578
(Pseudomonas syringae DC3000)

2e-58

2) shcM
( YP_273525.1 )

type III chaperone protein ShcM

NC_005773
(Pseudomonas syringae 1448A)

5e-57

3) Psyr_1185
( YP_234277.1 )

effector locus protein

NC_007005
(Pseudomonas syringae B728a)

2e-55

• Sequence Alignments

1) shcM in NC_004578


> AY597278|43|G43|51103075|AAT96221.1|Pseudomonas_viridiflava_PNA3.3a|-|44070..44567|-|-|Pspto1374-like 
protein
Length=165

 Score =  218 bits (810),  Expect = 2e-58, Method: Compositional matrix adjust.
 Identities = 113/161 (71%), Positives = 143/161 (89%), Gaps = 0/161 (0%)

Query  4    NDQYHTLINEICALSLISTPERFYESANFKISEVDFTLQFQDRDEGRAVLIYGDMGALPA  63
            ++QY TLINEICALSLIS+PERFYESANFKI +VDFTLQ+Q+R++GRAVLIYGDMG+LP 
Sbjct  5    EEQYKTLINEICALSLISSPERFYESANFKIDDVDFTLQYQNREQGRAVLIYGDMGPLPE  64

Query  64   RGRESALLALMDINFHMFAGAHSPAFSFNAQTGRVLLMGSVALERASAEGVLLLMKSFSD  123
            R R+ +LLALMD NFH+F+GAHSP FSFNAQTGRVLLMGSVALE ASAEG+LLLMKSF++
Sbjct  65   RNRDQSLLALMDTNFHLFSGAHSPVFSFNAQTGRVLLMGSVALEMASAEGILLLMKSFAE  124

Query  124  LAKEWREHGFMGQATTAGSSTDQPVAPAAKRESLSAPGRFQ  164
            LA +WR+HGF+++A+   + +  PV+P+++R+  +A GRFQ
Sbjct  125  LAGQWRQHGFIAKAAGDTARSSAPVPPSGQRDVRPAQGRFQ  165

2) shcM in NC_005773


> AY597278|43|G43|51103075|AAT96221.1|Pseudomonas_viridiflava_PNA3.3a|-|44070..44567|-|-|Pspto1374-like 
protein
Length=165

 Score =  213 bits (792),  Expect = 5e-57, Method: Compositional matrix adjust.
 Identities = 113/161 (71%), Positives = 139/161 (87%), Gaps = 0/161 (0%)

Query  4    NDPYHTLINEICALSLISTPERFYESANFKISEVDFTLQYQDRDEGRAVLIYGDMGALPT  63
            ++ Y TLINEICALSLIS+PERFYESANFKI +VDFTLQYQ+R++GRAVLIYGDMG+LP 
Sbjct  5    EEQYKTLINEICALSLISSPERFYESANFKIDDVDFTLQYQNREQGRAVLIYGDMGPLPE  64

Query  64   RNRDAALLALMDINFHMFSGVHSPVFSWNAQTSRVLLMGSVSLERASAEGVLLLMKSFAD  123
            RNRD +LLALMD NFH+FSG HSPVFS NAQT+RVLLMGSV+LE ASAEG+LLLMKSFA+
Sbjct  65   RNRDQSLLALMDTNFHLFSGAHSPVFSFNAQTGRVLLMGSVALEMASAEGILLLMKSFAE  124

Query  124  LANEWREHGFIGQVKTAGAPAEQPVATAAKRESLSASGKFQ  164
            LA +WR+HGFI++     A +  PV+ +++R+  +A G+FQ
Sbjct  125  LAGQWRQHGFIAKAAGDTARSSAPVPPSGQRDVRPAQGRFQ  165

3) Psyr_1185 in NC_007005


> AY597278|43|G43|51103075|AAT96221.1|Pseudomonas_viridiflava_PNA3.3a|-|44070..44567|-|-|Pspto1374-like 
protein
Length=165

 Score =  207 bits (771),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 109/161 (68%), Positives = 136/161 (85%), Gaps = 0/161 (0%)

Query  4    NDAYHTLISEICALSLISEPERFYESANFKISDVDFTLHYQDRDEGRAILIYGDMGALPA  63
            ++ Y TLI+EICALSLIS PERFYESANFKI DVDFTL+YQ+R++GRA+LIYGDMG+LP 
Sbjct  5    EEQYKTLINEICALSLISSPERFYESANFKIDDVDFTLQYQNREQGRAVLIYGDMGPLPE  64

Query  64   RNRDSALLALMDINFHMFSGAHSPAFSWNAQTGRVLLMGSIGLERATAEGVLLLMKSFAD  123
            RNRD +LLALMD NFH+FSGAHSP FS NAQTGRVLLMGS++LE A+AEG+LLLMKSFA+
Sbjct  65   RNRDQSLLALMDTNFHLFSGAHSPVFSFNAQTGRVLLMGSVALEMASAEGILLLMKSFAE  124

Query  124  LAREWREHGFMGPVGAAGAPVNMPASQATTRDTPASSGRFQ  164
            LA +WR+HGF++  ++  A  + P + +  RD  ++ GRFQ
Sbjct  125  LAGQWRQHGFIAKAAGDTARSSAPVPPSGQRDVRPAQGRFQ  165