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Homologs of hrpP gene of NC_004578_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrpP
( NP_791225.1 )

type III secretion protein HrpP

NC_004578
(Pseudomonas syringae DC3000)

4e-67

100

2) Psyr_1211
( YP_234303.1 )

type III secretion protein HrpP

NC_007005
(Pseudomonas syringae B728a)

5e-50

3) hrpP
( YP_273547.1 )

type III secretion protein HrpP

NC_005773
(Pseudomonas syringae 1448A)

6e-48

• Sequence Alignments

1) hrpP in NC_004578


> NC_004578_P1|44|G35|28868606|NP_791225.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|33610..34179|hrpP|PSPTO_1398|type 
III secretion protein HrpP
Length=189

 Score =  247 bits (922),  Expect = 4e-67, Method: Compositional matrix adjust.
 Identities = 164/164 (100%), Positives = 164/164 (100%), Gaps = 0/164 (0%)

Query  26   TALSEKPFGEKRPASGGLGRGDVQTSRSVLSKSLQDTPMSADGMFFSQLLVPPVSAEPgq  85
            TALSEKPFGEKRPASGGLGRGDVQTSRSVLSKSLQDTPMSADGMFFSQLLVPPVSAEPGQ
Sbjct  26   TALSEKPFGEKRPASGGLGRGDVQTSRSVLSKSLQDTPMSADGMFFSQLLVPPVSAEPGQ  85

Query  86   qgfggggIAFPVRAEQVPTQLIDELAQRLPDQPDGPLSFTLLMPSLGSVRVNANKTENRW  145
            QGFGGGGIAFPVRAEQVPTQLIDELAQRLPDQPDGPLSFTLLMPSLGSVRVNANKTENRW
Sbjct  86   QGFGGGGIAFPVRAEQVPTQLIDELAQRLPDQPDGPLSFTLLMPSLGSVRVNANKTENRW  145

Query  146  SVQLGFARRDVLKRLSAHTGACRDSLSQALGQDVELDMHEDLSA  189
            SVQLGFARRDVLKRLSAHTGACRDSLSQALGQDVELDMHEDLSA
Sbjct  146  SVQLGFARRDVLKRLSAHTGACRDSLSQALGQDVELDMHEDLSA  189

2) Psyr_1211 in NC_007005


> NC_004578_P1|44|G35|28868606|NP_791225.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|33610..34179|hrpP|PSPTO_1398|type 
III secretion protein HrpP
Length=189

 Score =  190 bits (706),  Expect = 5e-50, Method: Compositional matrix adjust.
 Identities = 113/156 (73%), Positives = 142/156 (92%), Gaps = 0/156 (0%)

Query  35   DDQPPAFAGAPRGDVQKVRFALNRSVTDSPMSADGMFFSQLLIPQVGEEPDQQGFGGSGV  94
            +++ PA +G  RGDVQ  R  L++S+ D+PMSADGMFFSQLL+P V+ EP+QQGFGG+G+
Sbjct  34   GEKRPASGGLGRGDVQTSRSVLSKSLQDTPMSADGMFFSQLLVPPVSAEPGQQGFGGGGI  93

Query  95   AFSAQSENVPTQLIDELAQRLPDQPDGPLAFSLLMPNLGSVRVNASKSENRWSIQLGFGR  154
            AF+ ++E+VPTQLIDELAQRLPDQPDGPL+F+LLMP+LGSVRVNA+K+ENRWS+QLGF+R
Sbjct  94   AFPVRAEQVPTQLIDELAQRLPDQPDGPLSFTLLMPSLGSVRVNANKTENRWSVQLGFAR  153

Query  155  RDVLKRLQGQVGACRDSLAQALGQDVELDMHEDFTA  190
            RDVLKRL ++ GACRDSL+QALGQDVELDMHED++A
Sbjct  154  RDVLKRLSAHTGACRDSLSQALGQDVELDMHEDLSA  189

3) hrpP in NC_005773


> NC_004578_P1|44|G35|28868606|NP_791225.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|33610..34179|hrpP|PSPTO_1398|type 
III secretion protein HrpP
Length=189

 Score =  183 bits (679),  Expect = 6e-48, Method: Compositional matrix adjust.
 Identities = 126/191 (66%), Positives = 159/191 (84%), Gaps = 3/191 (1%)

Query  1    MTAPIKHPAKAPTAPPVVHATQPSAPAQRAPDKA-DDKPPAFGSTTRTDMPKVRFAQNRS  59
            MTAPIK PAKAP AP    + + +A A   ++K+ ++K PA G+  R D+   R   ++S
Sbjct  1    MTAPIKTPAKAPPAPQRPAPVERPATAL--SEKPFGEKRPASGGLGRGDVQTSRSVLSKS  58

Query  60   ATETPESADGLFFSQLLIPQVGEEPDQQGFGGSSIALPAHAENVPTQLIDELAQRLPEQP  119
              +TP SADG+FFSQLL+P V+ EP+QQGFGG++IA+P +AE+VPTQLIDELAQRLP+QP
Sbjct  59   LQDTPMSADGMFFSQLLVPPVSAEPGQQGFGGGGIAFPVRAEQVPTQLIDELAQRLPDQP  118

Query  120  AGPLAFTLLMPSLGTVRVNAEKTEHRWSIQLGFARRDVLKRLQGHTGACRDSLSRALGHD  179
             GPL+FTLLMPSLG+VRVNA+KTE+RWS+QLGFARRDVLKRL +HTGACRDSLS+ALG+D
Sbjct  119  DGPLSFTLLMPSLGSVRVNANKTENRWSVQLGFARRDVLKRLSAHTGACRDSLSQALGQD  178

Query  180  VELDLHEDLAA  190
            VELD+HEDL+A
Sbjct  179  VELDMHEDLSA  189