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Homologs of tcdB1 gene of AF346500

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) tcdB1
( NP_928295.1 )

insecticidal toxin complex protein TcdB1

NC_005126
(Photorhabdus luminescens TTO1)

0.0

2) tcaC
( YP_003039735.1 )

insecticidal toxin complex protein tcdb2

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

0.0

3) tcdB2
( NP_928303.1 )

insecticidal toxin complex protein TcdB2

NC_005126
(Photorhabdus luminescens TTO1)

0.0

4) tcdB2
( YP_003712425.1 )

insecticidal toxin complex protein B

NC_014228
(Xenorhabdus nematophila ATCC 19061)

0.0

5) tcaC
( NP_927868.1 )

insecticidal toxin complex protein TcaC

NC_005126
(Photorhabdus luminescens TTO1)

0.0

6) PAU_03849
( YP_003042678.1 )

Insecticial toxin complex

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

0.0

7) tcaC
( YP_003467837.1 )

insecticidal toxin complex protein B

NC_013892
(Xenorhabdus bovienii SS-2004)

0.0

8) tcaC
( YP_003467479.1 )

insecticidal toxin complex protein B

NC_013892
(Xenorhabdus bovienii SS-2004)

0.0

9) xptC1
( YP_003712780.1 )

insecticidal toxin complex protein B

NC_014228
(Xenorhabdus nematophila ATCC 19061)

0.0

10) YpsIP31758_0414
( YP_001399407.1 )

insecticidal toxin complex protein

NC_009708
(Yersinia pseudotuberculosis IP 31758)

0.0

11) YE105_C3513
( YP_004299710.1 )

putative insecticidal toxin complex protein

NC_015224
(Yersinia enterocolitica 105.5R(r))

0.0

12) YPTS_3739
( YP_001874149.1 )

virulence plasmid 65kDa B protein

NC_010634
(Yersinia pseudotuberculosis PB1/+)

0.0

13) YPK_0478
( YP_001719234.1 )

virulence plasmid 65kDa B protein

NC_010465
(Yersinia pseudotuberculosis YPIII)

0.0

14) tcaC
( YP_072035.1 )

insecticidal toxin complex

NC_006155
(Yersinia pseudotuberculosis IP 32953)

0.0

15) tcaC1
( NP_995134.1 )

insecticidal toxin complex

NC_005810
(Yersinia pestis 91001)

0.0

16) A1122_07815
( YP_005521238.1 )

insecticidal toxin complex

NC_017168
(Yersinia pestis A1122)

0.0

17) YpAngola_A1182
( YP_001605725.1 )

insecticidal toxin complex

NC_010159
(Yersinia pestis Angola)

0.0

18) YPA_3691
( YP_653598.1 )

insecticidal toxin complex

NC_008150
(Yersinia pestis Antiqua)

0.0

19) tcaC
( YP_002348564.1 )

insecticidal toxin complex

NC_003143
(Yersinia pestis CO92)

0.0

20) YPD4_3151
( YP_005506358.1 )

insecticidal toxin complex

NC_017154
(Yersinia pestis D106004)

0.0

21) YPD8_3175
( YP_005510238.1 )

insecticidal toxin complex

NC_017160
(Yersinia pestis D182038)

0.0

22) tcaC
( YP_005626012.1 )

insecticidal toxin complex protein

NC_017265
(Yersinia pestis Harbin 35)

0.0

23) tcaC1
( NP_667528.1 )

insecticidal toxin complex

NC_004088
(Yersinia pestis KIM)

0.0

24) YPN_3493
( YP_649420.1 )

insecticidal toxin complex

NC_008149
(Yersinia pestis Nepal516)

0.0

25) YPDSF_0285
( YP_001161677.1 )

insecticidal toxin complex

NC_009381
(Yersinia pestis Pestoides F)

0.0

26) YPZ3_3162
( YP_003569333.1 )

insecticidal toxin complex

NC_014029
(Yersinia pestis Z176003)

0.0

27) EJP617_14820
( YP_005818050.1 )

Insecticidal toxin complex protein

NC_017445
(Erwinia sp. Ejp617)

0.0

28) vsdC
( YP_005801082.1 )

65 kDa virulence protein

NC_017390
(Erwinia pyrifoliae DSM 12163)

0.0

29) EpC_03190
( YP_002647356.1 )

Insecticidal toxin complex protein

NC_012214
(Erwinia pyrifoliae Ep1/96)

0.0

30) MU9_1212
( YP_007504631.1 )

Putative toxin subunit

NC_020418
(Morganella morganii KT)

0.0

31) RBRH_00598
( YP_004022195.1 )

insecticidal toxin complex protein TcaC

NC_014718
(Burkholderia rhizoxinica HKI 454)

0.0

32) BB2000_2659
( YP_008399174.1 )

hypothetical protein

NC_022000
(Proteus mirabilis BB2000)

0.0

33) Y11_26981
( YP_006006197.1 )

putative toxin subunit

NC_017564
(Yersinia enterocolitica Y11)

0.0

34) Rahaq2_2753
( YP_005200728.1 )

virulence plasmid B protein

NC_016818
(Rahnella aquatilis CIP 78.65)

0.0

35) SARI_00654
( YP_001569720.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

0.0

36) Rahaq2_2747
( YP_005200722.1 )

virulence plasmid B protein

NC_016818
(Rahnella aquatilis CIP 78.65)

0.0

37) tcaC
( YP_003712569.1 )

insecticidal toxin complex protein B

NC_014228
(Xenorhabdus nematophila ATCC 19061)

0.0

38) Q7S_09720
( YP_005401745.1 )

insecticidal toxin complex protein TcaC

NC_017047
(Rahnella aquatilis HX2)

0.0

• Sequence Alignments

1) tcdB1 in NC_005126


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 2248 bits (8543),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1364/1476 (93%), Positives = 1434/1476 (98%), Gaps = 0/1476 (0%)

Query  1     MQNSQTFSVAELSLPKGGGAITGMGEALTPTGPDGMAALSLPLPISAGRGYSPSLTLNYS  60
             MQNSQTFSV+ELSLPKGGGAITGMGEALTP+GPDGMAALSLPLPISAGRGY+PSLTLNY+
Sbjct  1     MQNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYN  60

Query  61    SGAGNSPFGLGWDCNVMTIRRRTSTGVPNYDETDTFLGPEGEVLVIALNENGQADIRSES  120
             SG+GNSPFGLGWDC VM+IRRRTSTGVPNYDETDTFLGPEGEVLV+ALNE GQADIRSES
Sbjct  61    SGTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSES  120

Query  121   SLQGINLGEIFTVTGYRSRLESHFSWLEYWQPKTTGTTDFWLIYSPDGQVHLLGKNPQAR  180
             SLQGINLG  FTVT YRSRLESHF++LEYWQP+TTG+TDFWLIYSPDGQVHLLGKNPQAR
Sbjct  121   SLQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGATDFWLIYSPDGQVHLLGKNPQAR  180

Query  181   ISNPLNVSQTAQWLLEASVSSHGEQIYYQYRAEDETNCETDEFTAHPNATVQRYLQAVHY  240
             ISNPLNV+QTAQWLLEAS+SSH+EQIYYQYRAEDE+ CETDE++AHP+ATVQRYLQ+VHY
Sbjct  181   ISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCETDELAAHPSATVQRYLQTVHY  240

Query  241   GNLTASEVFPTLNGDDPLKSGWLFCLVFDYGERKNSLSEIPPFKASSLWLCRQDRFSRYE  300
             GNLTAS+VFPTLNGDDPLKSGW+FCLVFDYGERKNSLSE+P FKA++ WLCR+DRFSRYE
Sbjct  241   GNLTASDVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRKDRFSRYE  300

Query  301   YGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAVISTLVSVRRIGH  360
             YGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENA++STLVSVRR+GH
Sbjct  301   YGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVSVRRVGH  360

Query  361   EDNNTVISLPPLELAYQPFEPEQKARWQSMDVLANFNAIQRWQLLDLKGEGVPGVLYQDR  420
             EDNNTV +LPPLELAYQPFEPEQ A WQSMDVLANFN+IQRWQLLDLKGEGVPG+LYQDR
Sbjct  361   EDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPGILYQDR  420

Query  421   NGWWYRSAQRQAGEEMNAVTWGKMQLLPITPALQDNASLMDINGDGQLDWVITGPGLRGY  480
             NGWWYRSAQRQAGEEMNAVTWGKMQLLPITPA+QDNASLMDINGDGQLDWVITGPGLRGY
Sbjct  421   NGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITGPGLRGY  480

Query  481   HSQHPDGSWTRFTPLDALPIEYSHPRAQLADLMGAGLSDLVLIGPKSVRLYANNRDGFTQ  540
             HSQHPDGSWTRFTPL+ALPIEYSHPRAQLADLMGAGLSDLVLIGPKSVRLY NNRDGFT+
Sbjct  481   HSQHPDGSWTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSVRLYVNNRDGFTE  540

Query  541   GRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWPNLGHGRFGQPIT  600
             GRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWPNLGHGRFGQPI 
Sbjct  541   GRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWPNLGHGRFGQPIV  600

Query  601   LPGFSQSADNFNPDRVHLADLDGSGPADLIYVHTDRLEIFKNESGNSFAKPFTLRFPDGL  660
             LPGFSQSA +FNPDRVHLADLDGSGPADLIYVH+DRL+IF NESGN+FAKPFTL FPDGL
Sbjct  601   LPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGFAKPFTLSFPDGL  660

Query  661   RFDDTCQLQVADVQGLGAVSLILSVPHMAPHHWRCDLTNAKPWLLSEMNNNMGAHHTLHY  720
             RFDDTCQLQVADVQGLG VSLILSVPHMAPHHWRCDLTNAKPWLLSE NNNMGA+HTLHY
Sbjct  661   RFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSETNNNMGANHTLHY  720

Query  721   RSSSQFWLDDKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVTTLRYAHGAWDGR  780
             RSS QFWLD+KAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVTTLRYAHGAWDGR
Sbjct  721   RSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVTTLRYAHGAWDGR  780

Query  781   EREFRGFGYVEQTDSHQLAQGNAPERTPPALTKNWYATGVPEVDNTLSAGYWRGDKQAFT  840
             EREFRGFGYVEQTDSHQLAQGNAPERTPPALTK+WYATG+P VDN+LSAGYWRGDKQAF+
Sbjct  781   EREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPAVDNALSAGYWRGDKQAFA  840

Query  841   GFTPRFTRWKEGKDVPATPENDDNLYWFNRALKGQLLRSELYGLDDSEQQNIPYTVTESR  900
             GFTPRFT WKEGKDVP TPE+D+NLYW+NRALKGQ LRSELYGLD+S QQ+IPYTVTESR
Sbjct  841   GFTPRFTLWKEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLDGSAQQQIPYTVTESR  900

Query  901   PQVRQLQDGTTASPVLWASVVENRSYHYERIIGDPQCNQDITLSSDQFGQPLKQVSMQYP  960
             PQVRQLQDG+T SPVLWASVVE+RSYHYERII+DPQCNQDITLSSD FGQPLKQVS+QYP
Sbjct  901   PQVRQLQDGATVSPVLWASVVESRSYHYERIISDPQCNQDITLSSDLFGQPLKQVSVQYP  960

Query  961   RRNQPTTNPYPDTLPDTLFASSYDDQQQLLRLTCQQSSWHHLTGNELRVLGLPDGTRSDA  1020
             RRN+PTTNPYPDTLPDTLFASSYDDQQQLLRLTC+QSSWHHL GNELRVLGLPDGTRSDA
Sbjct  961   RRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLIGNELRVLGLPDGTRSDA  1020

Query  1021  FTYDAKQVPVDGLNLEALCAENSLIADDKPREYLNQQRTFYTDGKNQAPLEIPTRQALIA  1080
             FTYDAKQVPVDGLNLE+LCAENSLIADDKPREYLNQQRTFYTDGKNQ+PL  PTRQALIA
Sbjct  1021  FTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTDGKNQTPLKTPTRQALIA  1080

Query  1081  FTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRTGENKVWVARQGYTDYGT  1140
             FTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRTGENKVWVARQGYTDYGT
Sbjct  1081  FTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRTGENKVWVARQGYTDYGT  1140

Query  1141  EAQFWRPVAQRNTLLTGKTTLQWDTHYCVITQTQDAAGLTVLANYDWRFLTPVQLTDIND  1200
             EAQFWRPVAQRN+LLTGK TL+WDTHYCVITQTQDAAGLTV ANYDWRFLTP QLTDIND
Sbjct  1141  EAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSANYDWRFLTPTQLTDIND  1200

Query  1201  NVHLITLDALGRPVTQRFWGIENGVKTGYSSPEEKPFSPPIDINTAIALTGPLPVAQCLV  1260
             NVHLITLDALGRPVTQRFWGIE+GV TGYSS+EEKPFSPP DI+TAI LTGPLPVAQCLV
Sbjct  1201  NVHLITLDALGRPVTQRFWGIESGVATGYSSSEEKPFSPPNDIDTAINLTGPLPVAQCLV  1260

Query  1261  YAPDSWMPLFSQETFNTLTQEEQTTLRDLRIITEDWRICALARRRWLQSQQASTPLVNLL  1320
             YAPDSWMPLFSQETFNTLTQEEQ TLRD RIITEDWRICAL+RRRWLQSQ+ STPLV+LL
Sbjct  1261  YAPDSWMPLFSQETFNTLTQEEQETLRDSRIITEDWRICALTRRRWLQSQKISTPLVKLL  1320

Query  1321  TNSIGLPPHNLTLTPDRYDRDSGQQIHQQVAFSDGFGRLLQASVRHEAGEAWQRNQDGSL  1380
             TNSIGLPPHNLTLT DRYDRDS QQI+QQVAFSDGFGRLLQASVRHEAGEAWQRNQDGSL
Sbjct  1321  TNSIGLPPHNLTLTTDRYDRDSEQQIRQQVAFSDGFGRLLQASVRHEAGEAWQRNQDGSL  1380

Query  1381  VTKMEDTKTRWAVTGRTEYDNKGQTIRTYQPYFLNDWRYVSDDSARKGAYADTHIYDPIG  1440
             VTK+E+TKTRWAVTGRTEYDNKGQTIRTYQPYFLNDWRYVSDDSARK AYADTHIYDPIG
Sbjct  1381  VTKVENTKTRWAVTGRTEYDNKGQTIRTYQPYFLNDWRYVSDDSARKEAYADTHIYDPIG  1440

Query  1441  REIRVITAKGWLRQSQYFPWFTVSEDENDTAADVIM  1476
             REIRVITAKGWLRQSQYFPWFTVSEDENDTAAD ++
Sbjct  1441  REIRVITAKGWLRQSQYFPWFTVSEDENDTAADALV  1476

2) tcaC in NC_012962


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1952 bits (7417),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1130/1474 (77%), Positives = 1314/1474 (90%), Gaps = 8/1474 (0%)

Query  1     MQNSQDFNITELSLPKGGGAITGMGEALTPAGPDGMTVLSLPLPISAGRGYAPSLTLNYN  60
             MQNSQ F++TELSLPKGGGAITGMGEALTPAGPDGM+ LSLPLPISAGRGYAPSLTLNYN
Sbjct  1     MQNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYN  60

Query  61    SGSGNSPFGLGWDCNVMSVRRRTHFGVPHYDETDTFLGPEGEVLIVV------DHPRDES  114
             SG+GNSPFGLGWDC VM++RRRT  GVP+YDETDTFLGPEGEVL+V        + R ES
Sbjct  61    SGTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSES  120

Query  115   TLQDINLGTTFTVTRYRPRLESHFSRLEYWQPKTTNATDFWLIYSPDGQVHLLGKNPQAR  174
             +LQ+INLG+TFTVT YR+RLESHF+RLEYWQP+TT ATDFWLIYSPDGQVHLLGKNPQAR
Sbjct  121   SLQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGATDFWLIYSPDGQVHLLGKNPQAR  180

Query  175   ISHP-SETKTAQWLLEASVSPHGEQIYYQYRPENETGCETDEITAHPQATAQRYLHTVHY  233
             IS+P +  +TAQWLLEAS+S+H+EQIYYQYR+E+E+GCETDE++AHP AT QRYL+TVHY
Sbjct  181   ISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCETDELAAHPSATVQRYLQTVHY  240

Query  234   GNLTASETLPGLDGHVSSQANWLFCLVFDYGERNNDLQTPPAFTTTDNWLCRQDRFSRYE  293
             GNLTAS+ +P L+G+ + ++ W+FCLVFDYGER+N L   P F +T+NWLCR+DRFSRYE
Sbjct  241   GNLTASDVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRKDRFSRYE  300

Query  294   YGFELRTRRLCRQILMYHRLQKLAGQAKKHDELTLVSRLILDYDESAIASTLVSVRKVGH  353
             YGFELRTRRLCRQILM+HRLQ L+GQAK +DE +LVSRLILDYDE+A+ STLVSVR+VGH
Sbjct  301   YGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVSVRRVGH  360

Query  354   EQDGTAITLPPLEFAYQDFAPQHNVRWQPMDVLANFNVIQRWQLIDLKGEGVPGLLYQDK  413
             E++ T  +LPPLE+AYQ F P++   WQ+MDVLANFN IQRWQL+DLKGEGVPG+LYQD+
Sbjct  361   EDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPGILYQDR  420

Query  414   GAWWYRSAQRQTGSDPNAVTWEKMQPLSVIPSLQNNASLVDINGDGQLDWVVTGPGLRGY  473
              +WWYRSAQRQ+G + NAVTW KMQ L++ P++Q+NASL+DINGDGQLDWV+TGPGLRGY
Sbjct  421   NGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITGPGLRGY  480

Query  474   HSQLPDGSWTRFTPLNALPVEYFHPRAQLADLMGAGLSDLVLIGPKSVRLYANTRDGFTK  533
             HSQ PDGSWTRFTPL+ALP+EY HPRAQLADLMGAGLSDLVLIGPKSVRLY N RDGFT 
Sbjct  481   HSQHPDGSWTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSVRLYVNNRDGFTE  540

Query  534   GQDVVQSGNVTLPIPGADARKLVAFSDVLGSSQAHLVEVSATKVTCWPNLGHGRFGQPII  593
             G+DVVQSG++TLP+PGADARKLVAFSDVLGS+QAHLVEVSAT+VTCWPNLGHGRFGQPI+
Sbjct  541   GRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWPNLGHGRFGQPIV  600

Query  594   LPGFSQPEAEFNPAQVYLADLDGSGPADLIYVHTNRLDIFLNKSGNSFAAPVTLTFPDGL  653
             LPGFSQ+ A FNP +V LADLDGSGPADLIYVH++RLDIF N SGN+FA P TL+FPDGL
Sbjct  601   LPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGFAKPFTLSFPDGL  660

Query  654   RFDNTCQLQVTDIQGLGVSSLILSVPHMAPHHWRCDLTLHKPWLLSEMNNNMGANHTLRY  713
             RFD+TCQLQV+D+QGLGV SLILSVPHMAPHHWRCDLT  KPWLLSE NNNMGANHTL+Y
Sbjct  661   RFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSETNNNMGANHTLHY  720

Query  714   RSSAQFWLDEKAKTLASGQTPICYLPFPVHTLWQTETEDEISGNKLVTTMRYVHGAWDGR  773
             RSS QFWLDEKA +LA+GQTP+CYLPFPVHTLWQTETEDEISGNKLVTT+RY HGAWDGR
Sbjct  721   RSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVTTLRYAHGAWDGR  780

Query  774   EREFRGFGYVEQTDSHQLAQGSAPERTPPALTKNWYATGLPEIDNTLSTEYWQGDTQAFN  833
             EREFRGFGYVEQTDSHQLAQG+APERTPPALTK+WYATGLP +DN+LS+ YW+GD QAF 
Sbjct  781   EREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPAVDNALSAGYWRGDKQAFA  840

Query  834   GFTPRFTTWANNQDVLLTPEDDNARYWLSRALKGQPLRSELYGLDGSALEQIPYTVTEFR  893
             GFTPRFT W + +DV LTPEDD+  YWL+RALKGQPLRSELYGLDGSA +QIPYTVTE R
Sbjct  841   GFTPRFTLWKEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLDGSAQQQIPYTVTESR  900

Query  894   PQVRRLQNTDSRYPVLWPSVTESRSYHYERIASDPQCSQDITLSSDLFGQPLKRISIQYP  953
             PQVR+LQ+  +  PVLW+SV ESRSYHYERI SDPQC+QDITLSSDLFGQPLK++S+QYP
Sbjct  901   PQVRQLQDGATVSPVLWASVVESRSYHYERIISDPQCNQDITLSSDLFGQPLKQVSVQYP  960

Query  954   RRNQPTISPYPDTLPETLFASSYDDQQHKLRLTYQQFSWHHLTNNTVRMLGLSDGTRSDT  1013
             RRN+PT +PYPDTLP+TLFASSYDDQQ+ LRLT +Q SWHHL  N +R+LGL+DGTRSD+
Sbjct  961   RRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLIGNELRVLGLPDGTRSDA  1020

Query  1014  FTYDAEYLPTGGLNLEILHAENSLIADDKPREYLGQQKIFYTDGQNTTPLQIPTRQALIA  1073
             FTYDA  +P +GLNLE L AENSLIADDKPREYL QQ+ FYTDG+N TPL+ PTRQALIA
Sbjct  1021  FTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTDGKNQTPLKTPTRQALIA  1080

Query  1074  FTETTVFNQSTLSAFDGSITSEKLPTTLKQAGYQQADYLFPRTGEGKVWTARHGYTDYGT  1133
             FTET+V+ +S LSAFDG+IT++ LP  L QAGYQQ  YLFPRTGE KVW AR+GYTDYGT
Sbjct  1081  FTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRTGENKVWVARQGYTDYGT  1140

Query  1134  ATQFWRPQKQSNTQFTGKITLTWDVNHCVVIQTRNAADLTTSAKYDWRFLTPIQLTDEND  1193
              +QFWRP  Q N+ +TGK+TL WD + CV+ QT++AA+LT SA+YDWRFLTP QLTD ND
Sbjct  1141  EAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSANYDWRFLTPTQLTDIND  1200

Query  1194  NVHFITLDALGRPITHRFWGTENGVMTGYTSPEKTAFLPPTDVNEAIDLTGPLPVAQCQV  1253
             NVH+ITLDALGRP+T+RFWG E+GV TGY+S+E  +F PP D++ AI+LTGPLPVAQC V
Sbjct  1201  NVHLITLDALGRPVTQRFWGIESGVATGYSSSEEKPFSPPNDIDTAINLTGPLPVAQCLV  1260

Query  1254  YAPESWMPTLSQKTLSILSAQEQQMLQNSRIITKDGRICILAHRRWLQSRSVSTQLISLL  1313
             YAP+SWMP +SQ T++ L+ +EQ+ L++SRIIT D RIC L++RRWLQS+ +ST L+ LL
Sbjct  1261  YAPDSWMPLFSQETFNTLTQEEQETLRDSRIITEDWRICALTRRRWLQSQKISTPLVKLL  1320

Query  1314  -NSTRLPPHSLTLTTDRYDNDTAQQIRQQVTFSDGFGRSLQVAVRHEAGKAWQRNKEGSL  1372
              NS  LPPH+LTLTTDRYD D+ QQIRQQV+FSDGFGR LQ +VRHEAG AWQRN++GSL
Sbjct  1321  TNSIGLPPHNLTLTTDRYDRDSEQQIRQQVAFSDGFGRLLQASVRHEAGEAWQRNQDGSL  1380

Query  1373  VTKIEDTNTRWAVTGRTEYDNKGQPIRTYQPYFLNDWRYVSNSSSRQEAYADTHIYDPVG  1432
             VTK+E+T+TRWAVTGRTEYDNKGQ IRTYQPYFLNDWRYVS+ S+R+EAYADTHIYDP+G
Sbjct  1381  VTKVENTKTRWAVTGRTEYDNKGQTIRTYQPYFLNDWRYVSDDSARKEAYADTHIYDPIG  1440

Query  1433  REVKVITAKGWFRRTLFTPWFTVNEDENDTAAEV  1466
             RE++VITAKGW+R++ + PWFTV+EDENDTAA+ 
Sbjct  1441  REIRVITAKGWLRQSQYFPWFTVSEDENDTAADA  1474

3) tcdB2 in NC_005126


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1934 bits (7347),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1118/1476 (76%), Positives = 1313/1476 (89%), Gaps = 8/1476 (0%)

Query  1     MQNSQDFSITELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLALNYN  60
             MQNSQ FS+TELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSL+LNYN
Sbjct  1     MQNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYN  60

Query  61    SGAGNTPFGLGWDCNVMTIRRRTHFGVPHYNETDTFLGPEGEVLVVA------DQPRDES  114
             SG+GN+PFGLGWDC VM+IRRRT  GVP+Y+ETDTFLGPEGEVLVVA       + R ES
Sbjct  61    SGTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSES  120

Query  115   TLQGINLGATFTVTGYRSRLESHFSRLEYWQPKTTGKTDFWLIYSPDGQVHLLGKSPQAR  174
             +LQGINLGATFTVT YRSRLESHF+RLEYWQP+TTG TDFWLIYSPDGQVHLLGK+PQAR
Sbjct  121   SLQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGATDFWLIYSPDGQVHLLGKNPQAR  180

Query  175   ISNPSQTTQTAQWLLEASVSPHGEQIYYQYRAEDNLDCETNEITLHPQATAQRYLHIVYY  234
             ISNP +  QTAQWLLEAS+S+H+EQIYYQYRAED+ +CET+E++ HP AT QRYL+ V Y
Sbjct  181   ISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCETDELAAHPSATVQRYLQTVHY  240

Query  235   GNRTASETLPGLNGRAPSQADWLFYLVFDYGERSNNLKMPPAFTATGNWLCRQDRFSRYE  294
             GN TAS+ +P LNG  P +++W+F LVFDYGER N+L   P F ATGNWLCR+DRFSRYE
Sbjct  241   GNLTASDVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRKDRFSRYE  300

Query  295   YGFALRTRRLCRQILMYHCLQALDNKIKEHNGPTLVSRLILNYDESAIASTLVFVRRVGH  354
             YGF LRTRRLCRQILM+H LQ+L  + K ++ P+LVSRLIL+YDE+A+ STLV VRRVGH
Sbjct  301   YGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVSVRRVGH  360

Query  355   EQDGTAVTLPPLELAYQDFSPQHNTDWQPMDVLANFNAIQRWQLVDLKGEGLPGLLYQDK  414
             E++ T  +LPPLELAYQ F P++ + WQ+MDVLANFN+IQRWQL+DLKGEG+PG+LYQD+
Sbjct  361   EDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPGILYQDR  420

Query  415   NAWWYRSAQRLGEIGSDTVTWEKIQPLSVIPSLQSNASLVDINGDGQLDWVITGPGLRGY  474
             N+WWYRSAQR +    ++VTW K+Q L++ P++Q NASL+DINGDGQLDWVITGPGLRGY
Sbjct  421   NGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITGPGLRGY  480

Query  475   HSQRPDGSWTRFTPLNALPVEYTHPRAQLADLMGAGLSDLVLIGPNSVRLYANTRDGFAK  534
             HSQ+PDGSWTRFTPL+ALP+EY+HPRAQLADLMGAGLSDLVLIGP+SVRLY N RDGF+ 
Sbjct  481   HSQHPDGSWTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSVRLYVNNRDGFTE  540

Query  535   GKDVVQSGDVTLPVPGADPRKLVAFSDVLGSGQAHLVEVSATKVTCWPNLGHGRFGQPIT  594
             G+DVVQSGD+TLP+PGAD+RKLVAFSDVLGSGQAHLVEVSAT+VTCWPNLGHGRFGQPI 
Sbjct  541   GRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWPNLGHGRFGQPIV  600

Query  595   LPGFSQPEAIFNPAQVYLADLDGSGPTDLIYVHTNRLDIFLNKSGNGFAAPMTLRFPEGL  654
             LPGFSQ+ A FNP +V LADLDGSGP+DLIYVH++RLDIF N SGNGFA P TL FP+GL
Sbjct  601   LPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGFAKPFTLSFPDGL  660

Query  655   RFDHTCQLQVADIQGLGVASLILSVPHMTPHHWRCDLTSAKPWLLSEMNNNMGAHHTLRY  714
             RFD+TCQLQVAD+QGLGV SLILSVPHM+PHHWRCDLT+AKPWLLSE NNNMGA+HTL+Y
Sbjct  661   RFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSETNNNMGANHTLHY  720

Query  715   RSSSQFWLDEKAAALVAGQTPVCYLPFPVHTLWQTETADEISGNKLVTTLRYARGAWDGR  774
             RSS QFWLDEKAAAL +GQTPVCYLPFPVHTLWQTET DEISGNKLVTTLRYA+GAWDGR
Sbjct  721   RSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVTTLRYAHGAWDGR  780

Query  775   EREFRGFGYVEQTDSHQLAQGNASERTPPAMTKNWYATGLPVIDNTLSTEYWRGDNQAFA  834
             EREFRGFGYVEQTDSHQLAQGNA+ERTPPA+TK+WYATGLP +DN+LS+ YWRGD+QAFA
Sbjct  781   EREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPAVDNALSAGYWRGDKQAFA  840

Query  835   GFSPRFTTWQDGKDILLTPEDDNSQYWLNRALKGQLLRSELYGLDDSTNKHVPYTVTEFR  894
             GF+PRFT W++GKD+ LTPEDD++ YWLNRALKGQ LRSELYGLD+S+++++PYTVTE R
Sbjct  841   GFTPRFTLWKEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLDGSAQQQIPYTVTESR  900

Query  895   PQVRRLQQADNQYPVLWSSVVESRSYHYERIASDPQCSQDITLSSDLFGQPLKQVSVQYP  954
             PQVR+LQ++    PVLW+SVVESRSYHYERI SDPQC+QDITLSSDLFGQPLKQVSVQYP
Sbjct  901   PQVRQLQDGATVSPVLWASVVESRSYHYERIISDPQCNQDITLSSDLFGQPLKQVSVQYP  960

Query  955   RRKQPAISPYPDTLPDELLANSYDEQQRQLRLTYQQSSWHHLTDNTVRVLGLPDSTRSDI  1014
             RR++P+ +PYPDTLPD L+A+SYD+QQ+ LRLT +QSSWHHL +N +RVLGLPD+TRSD 
Sbjct  961   RRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLIGNELRVLGLPDGTRSDA  1020

Query  1015  FTYEAKNVPAGGLNLELLSIKDSLIADNKPREYLGQKKTIYTNGKNAAPLQTPTRQALVA  1074
             FTY+AK+VP +GLNLE L   +SLIAD+KPREYL Q++T+YT+GKN +PL+TPTRQAL+A
Sbjct  1021  FTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTDGKNQTPLKTPTRQALIA  1080

Query  1075  FTETTVFSQSTLSAFDGSIPSAQLSTTLEQAGYQQTNYLFPRTGEDKIWVAHHGYTDYGT  1134
             FTET+V+++S LSAFDG+I + +L+  L QAGYQQ  YLFPRTGE+K+WVA++GYTDYGT
Sbjct  1081  FTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRTGENKVWVARQGYTDYGT  1140

Query  1135  AAQFWRPQKQSNTQLTGKITLTWDATYCVVTQTRDAAGLTTSAKYDWRFLTPVQLTDIND  1194
              AQFWRP  Q N+ LTGK+TL WD+ YCV+TQT+DAAGLT SA+YDWRFLTP QLTDIND
Sbjct  1141  EAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSANYDWRFLTPTQLTDIND  1200

Query  1195  NQHLIMLDALGRPITLRFWGTENGKMTGYSSPEKAPFSPPSDVNSAIELKKPLPVAQCQV  1254
             N HLI LDALGRP+T RFWG E+G  TGYSS+E  PFSPP+D+++AI+L  PLPVAQC V
Sbjct  1201  NVHLITLDALGRPVTQRFWGIESGVATGYSSSEEKPFSPPNDIDTAINLTGPLPVAQCLV  1260

Query  1255  YAPESWMPVLSQKALNRLAEQDRQKLYNTRIITEDGRICTLAYRHWSQSQKATPQLTSLL  1314
             YAP+SWMP++SQ ++N L++++++ L ++RIITED RIC+L+ R+W QSQK +  L  LL
Sbjct  1261  YAPDSWMPLFSQETFNTLTQEEQETLRDSRIITEDWRICALTRRRWLQSQKISTPLVKLL  1320

Query  1315  NNGPHLPPHSLTLTTDRYDHDPEQQIRQQVVFSDGFGRLLQAAARHEAGMAWQRNKEGSL  1374
              N+  LPPH+LTLTTDRYD+D+EQQIRQQV FSDGFGRLLQA+ RHEAG AWQRN++GSL
Sbjct  1321  TNSIGLPPHNLTLTTDRYDRDSEQQIRQQVAFSDGFGRLLQASVRHEAGEAWQRNQDGSL  1380

Query  1375  MISVKHTENRWAVTGRTEYDNKGQPIRTYQPYFLNDWRYVSNDSARQEKEAYADTHVYDP  1434
             +  V +T  RWAVTGRTEYDNKGQ IRTYQPYFLNDWRYVS+DSAR  KEAYADTH+YDP
Sbjct  1381  VTKVENTKTRWAVTGRTEYDNKGQTIRTYQPYFLNDWRYVSDDSAR--KEAYADTHIYDP  1438

Query  1435  VGREIKVITAKGWLRRTLFTPWFTVNEDENDTAAEV  1470
             +GREI+VITAKGWLR++ + PWFTV+EDENDTAA+ 
Sbjct  1439  IGREIRVITAKGWLRQSQYFPWFTVSEDENDTAADA  1474

4) tcdB2 in NC_014228


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1549 bits (5879),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 919/1509 (61%), Positives = 1177/1509 (78%), Gaps = 39/1509 (2%)

Query  1     MKQSSTFSVTELSLPKGGGNITGMGEAMTPAGPDGMAGLSLPLPISAGRGYAPslslsys  60
             M++S TFSVTELSLPKGGG ITGMGEA+TPAGPDGMA+LSLPLPISAGRGYAPSL+L+Y+
Sbjct  1     MQNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYN  60

Query  61    sglgngPFGLGWQCPVMAIRRRTHRGVPHYDKTDTFLGPDGEVLVAALNETQQPDIRSAS  120
             SG GN+PFGLGW+C VMAIRRRT  GVP+YD TDTFLGP+GEVLV ALNE+ Q+DIRS S
Sbjct  61    SGTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSES  120

Query  121   TLQGVELGDNYIVTGYHSRQEQQFNRFEYWQPKTKPQQGDFWLIYGTDGQKHLLGRNTEA  180
             +LQG++LG  + VT Y+SR E +FNR+EYWQP+T     DFWLIY+ DGQ HLLG+N +A
Sbjct  121   SLQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGA-TDFWLIYSPDGQVHLLGKNPQA  179

Query  181   RIFNPQQTKSQHTEQTAQWLLESSVSTHGEQIYYEYRCEDDMACSLTEIQLHPQSRSQRY  240
             RI NP      + +QTAQWLLE+S+S+H+EQIYY+YR ED+ +C   E+  HP +  QRY
Sbjct  180   RISNPL-----NVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCETDELAAHPSATVQRY  234

Query  241   LFAVHYGNISASDQLLGLDTNKKISIDNWLFHLVFDYGERSVQLSDKPAFTSSKKWLCRE  300
             L +VHYGN++ASD +  L+ +  +    W+F LVFDYGER   LS+ P F ++ +WLCR 
Sbjct  235   LQTVHYGNLTASDVFPTLNGDDPLK-SGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRK  293

Query  301   DCFSRYEYGFEVRTRRLCRQILMYHNIKALDPSANNDDIDQIALVVRLILQYDEKAVAST  360
             D FSRYEYGFE+RTRRLCRQILM+H +++L   A+ DD  + ALV RLIL+YDE+A+ ST
Sbjct  294   DRFSRYEYGFELRTRRLCRQILMFHRLQTLSGQAKGDD--EPALVSRLILDYDENAMVST  351

Query  361   LTMIQRVGHEIEKDKSGVFHALPPLELSYQPFELKQHSQWQSMEMPASFYPHQHWQFVDL  420
             L  ++RVGHE ++  +    ALPPLEL+YQPFE  Q + WQSM++ A+F   Q+WQ++DL
Sbjct  352   LVSVRRVGHEDNNTVT----ALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDL  407

Query  421   KGEGIPGLLYQERGSWWYRAPQRSPGKNQPDAVIWDDIQPLPAIPSLQENASLFDINGDG  480
             KGEG+PG+LYQ+R +WWYR++QR +G ++ +AV W+ +Q LP  P++Q+NASL DINGDG
Sbjct  408   KGEGVPGILYQDRNGWWYRSAQRQAG-EEMNAVTWGKMQLLPITPAVQDNASLMDINGDG  466

Query  481   QLDWIITGSGLQGYYSQRPDGDWTNFTPIQALPVEYFHPRAQLADIIGAGLSDLVLIGPK  540
             QLDW+ITG+GL+GY SQ+PDG WT FTP++ALP+EY HPRAQLAD++GAGLSDLVLIGPK
Sbjct  467   QLDWVITGPGLRGYHSQHPDGSWTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPK  526

Query  541   SVRLYANQRTGFNTGQTVIQSEGITLPIPGMDARRLVAFSDMLGSGQAHLVEINANGVTC  600
             SVRLY N+R GF  G+ V+QS +ITLP+PG DAR+LVAFSD+LGSGQAHLVE++A  VTC
Sbjct  527   SVRLYVNNRDGFTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTC  586

Query  601   WPNLGQGRFGQPLALSGFNLPENDFNPDRVYLADIDSSGTTDLIYACADHLRIFINQSGN  660
             WPNLG+GRFGQP+ L+GF+ +   FNPDRV LAD+D+SG +DLIY  AD+L IF N+SGN
Sbjct  587   WPNLGHGRFGQPIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGN  646

Query  661   HFVESETLPLPQNMRFDNTCQLQVADIQGLGVASLILSQAHGGQQNSTQHWRYDLAKQKP  720
              F  + TL++P+ +RFD+TCQLQVAD+QGLGV SLILS +H     + +HWR DL++ KP
Sbjct  647   GFAKPFTLSFPDGLRFDDTCQLQVADVQGLGVVSLILSVPH----MAPHHWRCDLTNAKP  702

Query  721   WLLNEMNNNIGAHHTLHYRSSAQFWLDEKAALIAAGKKPVCYLPFPIHTLWQTEITDEIS  780
             WLL+E NNN+GA+HTLHYRSS QFWLDEKAA +A+G+ PVCYLPFP+HTLWQTE  DEIS
Sbjct  703   WLLSETNNNMGANHTLHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEIS  762

Query  781   GNRLINEVRYKHGAWDRCEREFRGFGYVEQRDTNQRAQGSASERTAPALSKNWYATGLPE  840
             GN+L+  +RY HGAWD  EREFRGFGYVEQ D++Q AQG+A+ERT+PAL+K+WYATGLP 
Sbjct  763   GNKLVTTLRYAHGAWDGREREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPA  822

Query  841   IDKNLSEQYWQGDQKAFAQFNPRFTIWKNNDDAPLTTPDTLNDYWFNRALKGQLLRSELY  900
             +D+ LS  YW+GD++AFA F PRFT+WK+  D PLT  D  N YW+NRALKGQ LRSELY
Sbjct  823   VDNALSAGYWRGDKQAFAGFTPRFTLWKEGKDVPLTPEDDHNLYWLNRALKGQPLRSELY  882

Query  901   GLDNNSQESIPYTVSEHRPQVRRFPAEGNQF-IYWTSVLESRQYHYERISRDPQCNQSVT  959
             GLD ++Q+ IPYTV+E RPQVR++   +    + W+SV+ESR YHYERI  DPQCNQ +T
Sbjct  883   GLDGSAQQQIPYTVTESRPQVRQLQDGATVSPVLWASVVESRSYHYERIISDPQCNQDIT  942

Query  960   LKTDKYGHPLQQISIQYPRRPLSDIQHAYPKTLPANLPKDSDDKQQHVLRLNHQLSNWYH  1019
             L +D +G+PL+Q+S+QYPRR      ++YP TLP  L   S D QQ++LRL  + S+W H
Sbjct  943   LSSDLFGQPLKQVSVQYPRRN-KPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHH  1001

Query  1020  LVDTEYRVLGLPHETRQDAFIYNENETPANGFTLEKV--NELLKSDKSSPEYLGQQRTFY  1077
             L++ E RVLGLP+ TR DAF Y+ ++ P +G+ LE +  ++ L +D  + EYL QQRTFY
Sbjct  1002  LIGNELRVLGLPDGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFY  1061

Query  1078  TDGSGKKPIAKPTPQALVAFTETAIFTKSQLSSVFDGKMTEQERNDLLKQGGYQKGNIVC  1137
             TDG  + P+  PT QAL+AFTETA++T S LS+ FDG +T +E  ++L Q+GYQ+   + 
Sbjct  1062  TDGKNQTPLKTPTRQALIAFTETAVLTESLLSA-FDGGITPDELPGILTQAGYQQEPYL-  1119

Query  1138  FDTKKKDKKNSPEIWVARQGYTNYGGSEQFWRPMTQRNSLLTGQYRLTWDPHYCVITKTK  1197
             F     +K     +WVARQGYT+YG   QFWRP++QRNSLLTG+  L WD HYCVIT+T+
Sbjct  1120  FPRTGENK-----VWVARQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQ  1174

Query  1198  DAAGLTTRVKKYDWRFLLPVHLVDINDNHHFVTLDTLGRFITQRFWGTEEGKTAGYSEPQ  1257
             DAAGLT    +YDWRFL P +L DINDN H++TLD+LGR +TQRFWG E G ++GYS ++
Sbjct  1175  DAAGLTVSA-NYDWRFLTPTQLTDINDNVHLITLDALGRPVTQRFWGIESGVATGYSSSE  1233

Query  1258  DAPFPTSEQPASDCDTTIKQLVVQGKPLPVANYQLYYPASWMLSLKNKKVTSLLNSSDWQ  1317
             + PF+    P++D DT+I+       PLPVA+  +Y P SWM  + +    +L +  + +
Sbjct  1234  EKPFS----PPNDIDTAIN----LTGPLPVAQCLVYAPDSWMPLFSQETFNTLTQEEQ-E  1284

Query  1318  ALDKQTISTEDGYIRTLSLHRWIEKQLNHTILKAQLNQLSRLPPHSLTLITDRYDSDSRQ  1377
             +L    I TED  I +L+ +RW++ Q   T L   L +   LPPH+LTL TDRYD DS Q
Sbjct  1285  TLRDSRIITEDWRICALTRRRWLQSQKISTPLVKLLTNSIGLPPHNLTLTTDRYDRDSEQ  1344

Query  1378  QIHQQVIFSDGFGRPLQSAMRHEEGEAWQRTSDGKLIAKLEKTKYRWAVTGRTEYDNKGQ  1437
             QI+QQV FSDGFGR LQ+++RHE GEAWQR  DG L++K+E+TK RWAVTGRTEYDNKGQ
Sbjct  1345  QIRQQVAFSDGFGRLLQASVRHEAGEAWQRNQDGSLVTKVENTKTRWAVTGRTEYDNKGQ  1404

Query  1438  VIRSYQPYYLDDWRYVTDDSTRKNAYADTHYYDPVGREISVKTAKDWLRRVQYYPWFTVS  1497
              IR+YQPY+L+DWRYV+DDS+RK+AYADTH YDP+GREI V TAK+WLR+ QY+PWFTVS
Sbjct  1405  TIRTYQPYFLNDWRYVSDDSARKEAYADTHIYDPIGREIRVITAKGWLRQSQYFPWFTVS  1464

Query  1498  EDENDTAAE  1506
             EDENDTAA+
Sbjct  1465  EDENDTAAD  1473

5) tcaC in NC_005126


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1531 bits (5811),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 876/1486 (59%), Positives = 1166/1486 (79%), Gaps = 18/1486 (1%)

Query  1     MQDSPEVSITTLSLPKGGGAINGMGEALSAAGPDGMATLSLPLPLSTGRGTAPGLSLLYS  60
             MQ+S   S+T LSLPKGGGAI GMGEAL++AGPDGMA+LSLPLP+S+GRG AP+L+L Y+
Sbjct  1     MQNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYN  60

Query  61    SSAGNGPFGIGWQCGVMTISRRTQHGIPQYGNDDTFLSPQGEVMNIALNNQGQPDIRQDV  120
             S++GN+PFG+GW+CGVM+I RRT  G+P+Y++ DTFL+P+GEV+ +ALN+ GQ+DIR + 
Sbjct  61    SGTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSE-  119

Query  121   KTLQGVTLPISYTVTRYQARQIVDFSRIEYWQPASGQEGRAFWLISSPDGQLHILGKTAQ  180
              +LQG+ L  ++TVT Y++R   +F+R+EYWQP +   +  FWLI SPDGQ+H+LGK +Q
Sbjct  120   SSLQGINLGATFTVTCYRSRLESHFNRLEYWQPQTT-GATDFWLIYSPDGQVHLLGKNPQ  178

Query  181   ACLANPQNDQQIAQWLLEETVTPTGEHVSYQYRAEDETHCDDNEKTAHPNATAQRYLVQV  240
             A ++NP N +Q AQWLLE ++++ +E++ YQYRAEDE+ C+ +E +AHP+AT QRYL  V
Sbjct  179   ARISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCETDELAAHPSATVQRYLQTV  238

Query  241   NYGNIKPQTSLFVLDNTPPTPEEWLFHLVFDHGERDTSLHTVPKWDAGTAQWPVRQDIFS  300
             +YGN+ +   +  L+   P    W+F LVFD GER  SL  +P   A T++W  R+D FS
Sbjct  239   HYGNLTASDVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKA-TGNWLCRKDRFS  297

Query  301   RYEYGFEVRTRRLCQQVLMFHRTALMAGEAGTSDAPELVGRLILDYDRNASVTTLIAARQ  360
             RYEYGFE+RTRRLC+Q+LMFHR   ++G+A   D P LV+RLILDYD NA V+TL++ R+
Sbjct  298   RYEYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVSVRR  357

Query  361   LSHEPDGSPITLPPLELAWQRFNLEKMPTWQRFDALDNFNSQQRYQLVDLRGEGLPGMLY  420
             ++HE + +  +LPPLELA Q F+ E+ + WQ  D L NFN+ QR QL+DL+GEG+PG+LY
Sbjct  358   VGHEDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPGILY  417

Query  421   QDRGAWWYKAPQRQEDGDSNAVTYDKIAPLPTLPSLQDNASLMDINGDGQLDWVITASGI  480
             QDR +WWY+++QRQ + + NAVT +K+  LP  P++QDNASLMDINGDGQLDWVIT++G+
Sbjct  418   QDRNGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITGPGL  477

Query  481   RGYHSQQPDGKWTHFTPINALPVEYFHPSIQFADLTGAGLSDLVLIGPKSVRLYANQRNG  540
             RGYHSQ+PDG WT+FTP++ALP+EY HP  Q+ADL GAGLSDLVLIGPKSVRLY N+R+G
Sbjct  478   RGYHSQHPDGSWTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSVRLYVNNRDG  537

Query  541   WRKGQDVPQSTGITLPVTGTDARKLVAFSDMLGSGQQHLVEIRANRVTCWPNLGHGRFGQ  600
                G+DV QS +ITLP+ G+DARKLVAFSD+LGSGQ HLVE+ A +VTCWPNLGHGRFGQ
Sbjct  538   FTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWPNLGHGRFGQ  597

Query  601   PLTLPGFNQPETSFNPERLFLADIDGSGTTDIIYAQSGSLLIYLNQSGNQFDAPLTLALP  660
             P+ LPGF+Q+ +SFNP+R+ LAD+DGSG +D+IY +++ L I+ N+SGN F  P+TL++P
Sbjct  598   PIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGFAKPFTLSFP  657

Query  661   EGVQFDNTCQLQVADIQGLGIASLILTVPHMAPHHWRCDLSLTKPWLLNVMNNNRGAHHT  720
             +G++FD+TCQLQVAD+QGLG+ SLIL+VPHMAPHHWRCDL+ +KPWLL+  NNN GA+HT
Sbjct  658   DGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSETNNNMGANHT  717

Query  721   LHYRSSAQFWLDEKLQLTKAGKSPACYLPFPMHLLWHTEIQDEISGNRLTSAVSYSHGVW  780
             LHYRSS QFWLDEK     +G++P CYLPFP+H LW+TE +DEISGN+L +++ Y+HG W
Sbjct  718   LHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVTTLRYAHGAW  777

Query  781   DGKEREFRGFGCVKQTDTTTFSHGTAPEQAAPSLSISWFATGIDDVDSQLATEYWQADTQ  840
             DG+EREFRGFG V QTD+  +++G APE+++P+L+ SW+ATG+  VD+ L++ YW++D Q
Sbjct  778   DGREREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPAVDNALSAGYWRGDKQ  837

Query  841   AYSGFETRYTVWDNANQTDQAFTPNETQR-NWLTRALKGQLLRTELYGLDGTDSQTVPYT  899
             A++GF  R+T+W ++++   ++TP++ +   WL RALKGQ LR+ELYGLDG+  Q +PYT
Sbjct  838   AFAGFTPRFTLWKEGKDV--PLTPEDDHNLYWLNRALKGQPLRSELYGLDGSAQQQIPYT  895

Query  900   VSESRYQVRSIPVEKETELSAWVTAIENRSYHYERIISDPQLSQSIRLQHDIFGQSLQSV  959
             V+ESR QVR +          W + +E+RSYHYERIISDPQ +Q I L  D+FGQ+L+ V
Sbjct  896   VTESRPQVRQLQDGATVSPVLWASVVESRSYHYERIISDPQCNQDITLSSDLFGQPLKQV  955

Query  960   DIAWPRREKPAVNPYPPTLPEALFDSSYDDqqqrlrlvrqKNSWHHLTDGENWRLGLPNA  1019
              +  PRR+KP+ NPYP TLP++LF SSYDDQQQ LRL  +++SWHHL + E + LGLP++
Sbjct  956   SVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLIGNELRVLGLPDG  1015

Query  1020  QRRDVYTYDRTKIPTEGISLEVLLKADGLLADEKAAVYLGQQQTFYTAGQSEVTLEKPTL  1079
              R D +TYD  ++P +G++LE L   ++L+AD+K+  YL QQ+TFYT G+++  L  PT 
Sbjct  1016  TRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTDGKNQTPLKTPTR  1075

Query  1080  QALVAFQETAMMDDTSLQAYEGVIEEQGLNTTLTQAGYQQVARLFNTGSESPVWVARQGY  1139
             QAL+AF ETA++ ++ L A++G I  + L   LTQAGYQQ + LF   +E+ VWVARQGY
Sbjct  1076  QALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRTGENKVWVARQGY  1135

Query  1140  TDYRDATQFWRPQTQRNSLLTGKTTLTWDTHHCVIIQTQDAAGLTTQARYDYRFLTPVQL  1199
             TDY   +QFWRP +QRNSLLTGK TL WDTH CVI QTQDAAGLT  A YD RFLTP QL
Sbjct  1136  TDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSANYDWRFLTPTQL  1195

Query  1200  TDINDNQHIVTLDALGRVTTSRFWGTEAGQATGYS---NQPFTPPDSVDKALALTGVLPV  1256
             TDINDN H++TLDALGR  T RFWG E+G ATGYS   ++PF+PP+ +D A+ LTG LPV
Sbjct  1196  TDINDNVHLITLDALGRPVTQRFWGIESGVATGYSSSEEKPFSPPNDIDTAINLTGPLPV  1255

Query  1257  AQCLVYAVDSWMPllslsqlsqsPEEAEALWAQLRAAHMVTEDGKVCALGGKRGIGQQNL  1316
             AQCLVYA DSWMPL+S   ++   +E +     LR ++++TED ++CAL  +R +  Q++
Sbjct  1256  AQCLVYAPDSWMPLFSQETFNTLTQEEQ---ETLRDSRIITEDWRICALTRRRWLQSQKI  1312

Query  1317  TIQLISLLASIPRLPPHVLGITTDRYDNDPQQQHQQTVSFSDGFGRLLQSSVRHEPGDAW  1376
             +  L+ LL++   LPPH L +TTDRYD D++QQ +Q V+FSDGFGRLLQ+SVRHE+G+AW
Sbjct  1313  STPLVKLLTNSIGLPPHNLTLTTDRYDRDSEQQIRQQVAFSDGFGRLLQASVRHEAGEAW  1372

Query  1377  QRKEDGGLVVDANGALVSAATDTRWAVSGRTEYDDKGQPVRTYQPYFLNNWRYVSDDSAR  1436
             QR++DG+LV   +       T TRWAV+GRTEYD+KGQ +RTYQPYFLN+WRYVSDDSAR
Sbjct  1373  QRNQDGSLVTKVEN------TKTRWAVTGRTEYDNKGQTIRTYQPYFLNDWRYVSDDSAR  1426

Query  1437  DDLFADTHLYDPLGREYKVITAKKYLREKQYTPWFIVSEDENDTAS  1482
              + +ADTH+YDP+GRE +VITAK  LR+ QY PWF VSEDENDTA+
Sbjct  1427  KEAYADTHIYDPIGREIRVITAKGWLRQSQYFPWFTVSEDENDTAA  1472

6) PAU_03849 in NC_012962


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1513 bits (5745),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 874/1490 (59%), Positives = 1158/1490 (78%), Gaps = 17/1490 (1%)

Query  1     MQDSPKVSVTTLSLPKGGGAINGMGEALNTAGPEGAATlslplplssGRGVAPGLSLIYS  60
             MQ+S   SVT LSLPKGGGAI GMGEAL  AGP+G A+LSLPLP+S+GRG AP+L+L Y+
Sbjct  1     MQNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYN  60

Query  61    SSAGNGPFGIGWQCGVMTISRRTQHGIPQYGTDDTFLSPQGEVMNIALNDQGQPDIRQGV  120
             S++GN+PFG+GW+CGVM+I RRT  G+P+Y+  DTFL+P+GEV+ +ALN+ GQ+DIR   
Sbjct  61    SGTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSE-  119

Query  121   KTLQGVTLPVSYTVTHYQPRQIQDFSKIEYWQPSSGQEGRPFWLISSPDGQLHILGKTAQ  180
              +LQG+ L  ++TVT Y++R   +F+++EYWQP +   +  FWLI SPDGQ+H+LGK +Q
Sbjct  120   SSLQGINLGATFTVTCYRSRLESHFNRLEYWQPQTT-GATDFWLIYSPDGQVHLLGKNPQ  178

Query  181   ACLTNPQNDQQIAQWLLEETVTPTGEHVSYQYRAEDEANCDDNEKTRHPNTTAQRYLVQV  240
             A ++NP N +Q AQWLLE ++++ +E++ YQYRAEDEA C+ +E + HP++T QRYL  V
Sbjct  179   ARISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCETDELAAHPSATVQRYLQTV  238

Query  241   NYGNIKPQASLFVLDNTPPTPEEWLFHLVFDHGERDTSLYTVPAWDTGTAQWSARPDTFS  300
             +YGN+ +   +  L+   P    W+F LVFD GER  SL  +P    +T++W  R D FS
Sbjct  239   HYGNLTASDVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLF-KATGNWLCRKDRFS  297

Query  301   RYEYGFEVRTRRLCQQVLMFHRIALLAGEANTNSTPELVGRLILDYDKNASVTTLIAARQ  360
             RYEYGFE+RTRRLC+Q+LMFHR+  L+G+A+ +  P LV+RLILDYD NA V+TL++ R+
Sbjct  298   RYEYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVSVRR  357

Query  361   LSHESDGKPTAMPPLEFAWQQFDHEKIPAWQRFDTLDNFNPQQHYQLVDLRGEGLPGMLY  420
             ++HE +   TA+PPLE+A Q F+ E+ + WQ  D L NFN  Q+ QL+DL+GEG+PG+LY
Sbjct  358   VGHEDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPGILY  417

Query  421   QERGAWWYKAPQRQEGKDSNAVTYSKIAPLPTLPSLQENASLMDINGDGQLDWVVTASGI  480
             Q+R +WWY+++QRQ G + NAVT +K+  LP  P++Q+NASLMDINGDGQLDWV+T++G+
Sbjct  418   QDRNGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITGPGL  477

Query  481   RGYHSQQPDGKWTHFTPISALPVEYFHPSAQFADLIGAGLSDLVLIGPKSVRLYANQRDG  540
             RGYHSQ+PDG WT+FTP+ ALP+EY HP AQ+ADL+GAGLSDLVLIGPKSVRLY N+RDG
Sbjct  478   RGYHSQHPDGSWTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSVRLYVNNRDG  537

Query  541   WRKGENVPQSAGITLPIAGTDARKLVAFSDMLGSGQQHLVEISANSVTCWPNLGHGRFGQ  600
                G +V QS++ITLP++G+DARKLVAFSD+LGSGQ HLVE+SA  VTCWPNLGHGRFGQ
Sbjct  538   FTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWPNLGHGRFGQ  597

Query  601   PLTLPGFSHPENRFNPERLFLADIDGSGTADIIYAQSDSLLIYLNQSGNQFDAPLTLALP  660
             P+ LPGFS++   FNP+R+ LAD+DGSG AD+IY ++D L I+ N+SGN F  P+TL++P
Sbjct  598   PIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGFAKPFTLSFP  657

Query  661   EGVQFDNTCQLQVADIQGLGVASLILTVPHMTPHHWRCDLSLTKPWLLKVMNNNRGAHHT  720
             +G++FD+TCQLQVAD+QGLGV SLIL+VPHM+PHHWRCDL+ +KPWLL   NNN GA+HT
Sbjct  658   DGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSETNNNMGANHT  717

Query  721   LHYRSSAQFWLDEKLQLTKAGKPPICYLPFPMHLLWHTEIQDEISGNKLTSEVSYSHGVW  780
             LHYRSS QFWLDEK     +G+ P+CYLPFP+H LW+TE +DEISGNKL + + Y+HG W
Sbjct  718   LHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVTTLRYAHGAW  777

Query  781   DDKEREFRGFGCIKQTDTTTFSHGTAPEQASPSLSVSWFATGIDAVDNQLSAEYWQGDTQ  840
             D++EREFRGFG + QTD+  +++G APE+++P+L+ SW+ATG+ AVDN LSA YW+GD Q
Sbjct  778   DGREREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPAVDNALSAGYWRGDKQ  837

Query  841   ACTEFKTRYTTWDSTSQTDKVFSPNDTQR-NWLTRAVKGQLLRNEVYSLDGTEKETIPYI  899
             A + F  R+T W    +    ++P+D +   WL RA+KGQ LR+E+Y+LDG+ ++ IPY 
Sbjct  838   AFAGFTPRFTLWKEGKDVP--LTPEDDHNLYWLNRALKGQPLRSELYGLDGSAQQQIPYT  895

Query  900   VSESRYQVRFIPVDKETELSAWVSAIENRSYHYERIVSDPLLTQSIRLQQDIFGQLLQGV  959
             V+ESR QVR +  +       W S +E+RSYHYERI+SDP   Q I L  D+FGQ L+ V
Sbjct  896   VTESRPQVRQLQDGATVSPVLWASVVESRSYHYERIISDPQCNQDITLSSDLFGQPLKQV  955

Query  960   DISWPRREKPAENPYPSTLPDTLFDSSYDDQQQVLRLVRQKNNWHHLTDGENWRLGLPDA  1019
              +  PRR+KP+ NPYP TLPDTLF SSYDDQQQ+LRL  ++++WHHL + E + LGLPD+
Sbjct  956   SVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLIGNELRVLGLPDG  1015

Query  1020  QRSDVYTHDRSKIPADGISLEVLLEEDGLLADEKAAVYLGQQQTFYTAGQSEIPLEKPTL  1079
              RSD +T D  ++P DG++LE L  E++L+AD+K+  YL QQ+TFYT G+++ PL  PT 
Sbjct  1016  TRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTDGKNQTPLKTPTR  1075

Query  1080  QALVAFYETAMMDDTSLQAYDGVIEQQALNTALTQAGYQQSARLFNTGSESPVWVARLGY  1139
             QAL+AF ETA++ ++ L A+DG I  + L   LTQAGYQQ + LF   +E+ VWVAR GY
Sbjct  1076  QALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRTGENKVWVARQGY  1135

Query  1140  TDYGDATQFWRPQAQRNSLLTGKTTLSWDTHHCVVTQTQDAAGLTTQAHYDYRFLTPIQL  1199
             TDYG  +QFWRP AQRNSLLTGK TL WDTH CV+TQTQDAAGLT  A+YD RFLTP QL
Sbjct  1136  TDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSANYDWRFLTPTQL  1195

Query  1200  TDINDNQHIVTLDALGRVITSRFWGTEAGQVTGYSTPADKPFTPPDSVDKALALTGQLPV  1259
             TDINDN H++TLDALGR +T RFWG E+G  TGYS++ +KPF+PP+ +D A+ LTG LPV
Sbjct  1196  TDINDNVHLITLDALGRPVTQRFWGIESGVATGYSSSEEKPFSPPNDIDTAINLTGPLPV  1255

Query  1260  AQCIVHAIDGWMPALSLTHLSG-TQEEAETQWKQLQAAQVVTEDGKIRTLSWQQAIDRQK  1318
             AQC+V A D+WMP +S   ++  TQEE ET    L+ ++++TED +I +L++++ ++ QK
Sbjct  1256  AQCLVYAPDSWMPLFSQETFNTLTQEEQET----LRDSRIITEDWRICALTRRRWLQSQK  1311

Query  1319  LTVQMASLFADIPRLPPHTLTITTDRYDNDPQQLHQQTISFSDGFGRLLQSSVRYESGDA  1378
             ++  +  L+++   LPPH LT+TTDRYD D++Q  +Q ++FSDGFGRLLQ+SVR E+G+A
Sbjct  1312  ISTPLVKLLTNSIGLPPHNLTLTTDRYDRDSEQQIRQQVAFSDGFGRLLQASVRHEAGEA  1371

Query  1379  WQRKEDGGLVVDTNGALVSAPTDTRWVVSGRTEYDDKGQPVRTYQPYFLNDWRYVSDDSA  1438
             WQR++DG+LV   +       T TRW V+GRTEYD+KGQ +RTYQPYFLNDWRYVSDDSA
Sbjct  1372  WQRNQDGSLVTKVEN------TKTRWAVTGRTEYDNKGQTIRTYQPYFLNDWRYVSDDSA  1425

Query  1439  RDDLFADTHIYDPLGREYKVITAKKYLREKQYTPWFVVSEDENDTASRNL  1488
             R + +ADTHIYDP+GRE +VITAK  LR+ QY PWF VSEDENDTA+  L
Sbjct  1426  RKEAYADTHIYDPIGREIRVITAKGWLRQSQYFPWFTVSEDENDTAADAL  1475

7) tcdB1 in NC_007435


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1428 bits (5420),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 851/1462 (59%), Positives = 1132/1462 (78%), Gaps = 20/1462 (1%)

Query  27    MGQTLSAIGPDGMAEMSLPLPMSAGRGYAPALGLTYSSGAGNGPFGIGWQMGTMSIRRRT  86
             MG++L++ GPDGMA +SLPLP+SAGRGYAP+L L Y+SG+GN+PFG+GW+ G M+IRRRT
Sbjct  24    MGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNSGTGNSPFGLGWDCGVMAIRRRT  83

Query  87    SHGTPRYDSTDSFLGPDGEVLLVASDTEGQPDVRSANALQGVILDTRHTITRYQPRTERN  146
             S G P YD TD+FLGP+GEVL+VA +  GQ+D+RS ++LQG+ L++  T+T Y++R E +
Sbjct  84    STGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESSLQGINLGATFTVTCYRSRLESH  143

Query  147   FSKIEHWQPSDDTGAGFWLIRSADGQVHILGKTAQARISAPGNSTHVAQWLLEESMSAGG  206
             F+++E WQP    +++FWLI S+DGQVH+LGK +QARIS P N  + AQWLLE S+S+ +
Sbjct  144   FNRLEYWQPQTTGATDFWLIYSPDGQVHLLGKNPQARISNPLNVNQTAQWLLEASISSHS  203

Query  207   EHVYYEYYAEDDVGCSAAEKHAHPDTSAQRYLAIVHYGNIHPSDCLFVLSDTAPSSAGWL  266
             E++YY+Y AED+ GC + E  AHP ++ QRYL  VHYGN+ +SD +  L++  P  +GW+
Sbjct  204   EQIYYQYRAEDEAGCETDELAAHPSATVQRYLQTVHYGNLTASDVFPTLNGDDPLKSGWM  263

Query  267   FVLVFDYGERAASIDAVPKFASSQPWLSRTDPFSRYEFGFEVRTRRLCRQVLAFHRLQTL  326
             F LVFDYGER  S+  +P F ++  WL R D FSRYE+GFE+RTRRLCRQ+L FHRLQTL
Sbjct  264   FCLVFDYGERKNSLSEMPLFKATGNWLCRKDRFSRYEYGFELRTRRLCRQILMFHRLQTL  323

Query  327   AGVANGDDVPALVHRMVLQYDENPVVSMLVACRVLGHELDGRPVPMPPLEIDYQRFTP--  384
             +G A+GDD PALV R++L+YDEN++VS LV+ R +GHE +    ++PPLE+ YQ F P  
Sbjct  324   SGQAKGDDEPALVSRLILDYDENAMVSTLVSVRRVGHEDNNTVTALPPLELAYQPFEPEQ  383

Query  385   TAIWQPMRELENFDLPQRWQLVDLFGDGLAGVLYKDDHAWCYCAPQRQEGGAPDAITWRK  444
             TA+WQ+M  L NF+  QRWQL+DL G+G++G+LY+D ++W Y ++QRQ G   +A+TW K
Sbjct  384   TALWQSMDVLANFNTIQRWQLLDLKGEGVPGILYQDRNGWWYRSAQRQAGEEMNAVTWGK  443

Query  445   SHMLPQIPVLNGMDTATLIDVNGDGRLEWLVTHPGLQGYHRVLPEGKWTHFTPLTALPVE  504
              ++LP  P ++  D A+L+D+NGDG+L+W++T PGL+GYH   P+G WT+FTPL ALP+E
Sbjct  444   MQLLPITPAVQ--DNASLMDINGDGQLDWVITGPGLRGYHSQHPDGSWTRFTPLHALPIE  501

Query  505   YFHPRAQLADLMGAGFSDLVLIGPKSVRLYANERDGWTQGQTVIQSDGITLPIPGADACK  564
             Y HPRAQLADLMGAG+SDLVLIGPKSVRLY N+RDG T+G+ V+QS++ITLP+PGADA K
Sbjct  502   YSHPRAQLADLMGAGLSDLVLIGPKSVRLYVNNRDGFTEGRDVVQSGDITLPLPGADARK  561

Query  565   LVAFSDVLGSGQPHLVEISADGVTCWPNLGLGRLGVPLKLPGFNQPTETFDPGRVFLADL  624
             LVAFSDVLGSGQ+HLVE+SA  VTCWPNLG GR+G P+ LPGF+Q++ +F+P+RV LADL
Sbjct  562   LVAFSDVLGSGQAHLVEVSATQVTCWPNLGHGRFGQPIVLPGFSQSAASFNPDRVHLADL  621

Query  625   DGSGAVDLIYAHSDHLQIYTNQSGNGFAAPQSLSLPDGARFDDTCLLQAADIQGLGVVSL  684
             DGSG+ DLIY H+D+L+I++N+SGNGFA P +LS+PDG RFDDTC LQ AD+QGLGVVSL
Sbjct  622   DGSGPADLIYVHADRLDIFSNESGNGFAKPFTLSFPDGLRFDDTCQLQVADVQGLGVVSL  681

Query  685   VLTIPHPTPHHWRCDLSRNKPWLMSDVCNNMGAHTTLYYRSSVQFWLDEKAAA-NVDTPP  743
             +L++PH +PHHWRCDL+  KPWL+S+  NNMGA+ TL YRSSVQFWLDEKAAA   +  P
Sbjct  682   ILSVPHMAPHHWRCDLTNAKPWLLSETNNNMGANHTLHYRSSVQFWLDEKAAALATGQTP  741

Query  744   VTNLPFPIHTLCRKELLDEITGNRLVTNMRFAHGVWDGNEREFRGFGRVEQFDTDMRACG  803
             V  LPFP+HTL + E  DEI+GN+LVT +R+AHG WDG EREFRGFG VEQ D++  A G
Sbjct  742   VCYLPFPVHTLWQTETEDEISGNKLVTTLRYAHGAWDGREREFRGFGYVEQTDSHQLAQG  801

Query  804   DVSQRTAPSLTRSWFATGMPTVDERLADEFWHGDAQAFAGFSPRFTIWDTASGHDEPLTP  863
             + ++RT+P+LT+SW+ATG+P+VD+ L+  +W+GD QAFAGF+PRFT+W    G D PLTP
Sbjct  802   NAPERTPPALTKSWYATGLPAVDNALSAGYWRGDKQAFAGFTPRFTLWK--EGKDVPLTP  859

Query  864   SESAR-YWLSRAMKGQLLRSEVYGLDETGSEGIPYTVTESRLQLRLIASAETEQPAAWPS  922
              +    YWL+RA+KGQ LRSE+YGLD ++ + IPYTVTESR Q+R +  + T  P  W+S
Sbjct  860   EDDHNLYWLNRALKGQPLRSELYGLDGSAQQQIPYTVTESRPQVRQLQDGATVSPVLWAS  919

Query  923   VVEIRSYQYERIGSDPQCSQQVQLALDAFGFPLQSVAIAYPRRPKPVDNPYPETLPDALL  982
             VVE RSY+YERI SDPQC+Q++ L+ D FG PL+ V++ YPRR KP  NPYP+TLPD+L+
Sbjct  920   VVESRSYHYERIISDPQCNQDITLSSDLFGQPLKQVSVQYPRRNKPTTNPYPDTLPDTLF  979

Query  983   DNSYDAQQASVTLVRRTTRYHHLTSGETWRLGLPDCERSDVFTYESTRVPADGFSLEKLS  1042
              +SYD QQ  + L  R +  HHL + E + LGLPD  RSD FTY++ +VP DG++LE L 
Sbjct  980   ASSYDDQQQLLRLTCRQSSWHHLIGNELRVLGLPDGTRSDAFTYDAKQVPVDGLNLETLC  1039

Query  1043  GSESLIGAGRPFAFAGQQQVHYTMCQSEEPIAFPTSQALVAFTETAMlddaallaydGVV  1102
             + +SLI+ ++P  +  QQ+  YT  +++ P+  PT QAL+AFTETA+L ++ L A+DG +
Sbjct  1040  AENSLIADDKPREYLNQQRTFYTDGKNQTPLKTPTRQALIAFTETAVLTESLLSAFDGGI  1099

Query  1103  APEDLGPLLLECGYLRVPRLLGDGAENAVWAARRGYTDYGGAQQFWRPLRQRASLLTGVT  1162
             +P++L  +L + GY + P L+   +EN VW AR+GYTDYG   QFWRP+ QR SLLTG  
Sbjct  1100  TPDELPGILTQAGYQQEPYLFPRTGENKVWVARQGYTDYGTEAQFWRPVAQRNSLLTGKM  1159

Query  1163  TLTWDPHYCVVAGTRDAAGLTMQAAFDWRFLLPFKVTDSNNNQHHGALDALGRLVSRRFW  1222
             TL WD HYCV++ T+DAAGLT+ A +DWRFL P ++TD N+N H  +LDALGR V++RFW
Sbjct  1160  TLKWDTHYCVITQTQDAAGLTVSANYDWRFLTPTQLTDINDNVHLITLDALGRPVTQRFW  1219

Query  1223  GTEGGLPAGYSAPEDAPFTAPSSVDEALALTPGIPVAECFVIVPDSWMPNLSESQVSELD  1282
             G E+G+++GYS++E+ PF++P+ +D A+ LT  +PVA+C+V  PDSWMP +S+   + L 
Sbjct  1220  GIESGVATGYSSSEEKPFSPPNDIDTAINLTGPLPVAQCLVYAPDSWMPLFSQETFNTLT  1279

Query  1283  GEDASLWRDLRIAGVVSEDNRVCALARRRWKQQ---GTALDSWLAQAQRVPPHtltlttd  1339
              E+      LR + +++ED R+CAL+RRRW Q    +T+L   L+++  +PPH LTLTTD
Sbjct  1280  QEEQE---TLRDSRIITEDWRICALTRRRWLQSQKISTPLVKLLTNSIGLPPHNLTLTTD  1336

Query  1340  rydtdlAQQLRQQVTFSDGFGRVLQSSVRHEAGDAWQLAEDGSLVTGATGVPITAYSDFR  1399
             RYD D  QQ+RQQV+FSDGFGR+LQ+SVRHEAG+AWQ  +DGSLVT             R
Sbjct  1337  RYDRDSEQQIRQQVAFSDGFGRLLQASVRHEAGEAWQRNQDGSLVTKVENTKT------R  1390

Query  1400  WAVTGRVEYDNKGQVMRVYQPYFLNDWRYVrddharadafadrqdydPMGRLIRVVTAKG  1459
             WAVTGR EYDNKGQ +R YQPYFLNDWRYV DD AR +A+AD + YDP+GR IRV+TAKG
Sbjct  1391  WAVTGRTEYDNKGQTIRTYQPYFLNDWRYVSDDSARKEAYADTHIYDPIGREIRVITAKG  1450

Query  1460  YLRRTQYYPWFVVKEDENDTEA  1481
              LR++QY+PWF V EDENDT A
Sbjct  1451  WLRQSQYFPWFTVSEDENDTAA  1472

8) tcaC in NC_013892


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1400 bits (5312),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 832/1505 (56%), Positives = 1128/1505 (75%), Gaps = 39/1505 (2%)

Query  3     QDSQDMTVTQLSLPKGGGAISGMGDAISNAGPDGMASLSVPLPISAGRGSAPNLSLNYSS  62
             Q+SQ  +VT+LSLPKGGGAI+GMG+A++ AGPDGMA+LS+PLPISAGRG AP+L+LNY+S
Sbjct  2     QNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNS  61

Query  63    GAGNGPFGIGWQSSTMAISRRTQHGVPQYHGEDTFLCPMGEVMAVAVNPSGQPDVRQTDK  122
             G+GN+PFG+GW+ + MAI RRT  GVP+Y+  DTFL P GEV+ VA+N +GQ+D+R    
Sbjct  62    GTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESS  121

Query  123   LLGGQLPVTYTVTRHQPRNIQHFSKLEYWQSLTDVETTPFWLMYSPDGQIHIFGKTEQAQ  182
             L G +L  T+TVT  ++R   HF++LEYWQ+ T   +T FWL+YSPDGQ+H++GK  QA+
Sbjct  122   LQGINLGATFTVTCYRSRLESHFNRLEYWQPQT-TGATDFWLIYSPDGQVHLLGKNPQAR  180

Query  183   IANPAETSQIAQWLLEETVTPTGEHIYYQYRAEDDIGCDDSEKNAHPNASAQRYLAQVNY  242
             I+NP + +Q AQWLLE ++++ +E+IYYQYRAED+ GC+  E  AHP+A+ QRYL  V+Y
Sbjct  181   ISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCETDELAAHPSATVQRYLQTVHY  240

Query  243   GNITPESSLLVLKNTPPADHEWLFHLVFDYGERTQEINTVPPFKAPSNNWRIRPDRFSRF  302
             GN+T+   +  L+   P    W+F LVFDYGER + ++ +P FKA + NW  R DRFSR+
Sbjct  241   GNLTASDVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKA-TGNWLCRKDRFSRY  299

Query  303   EYGFEVRTRRLCQQILMFHRLKSLTGEQIDGEETPALVARLLLSYDLNDSVATLTAIRQM  362
             EYGFE+RTRRLC+QILMFHRL++L+G Q  G++ PALV+RL+L YD N  V+TL ++R++
Sbjct  300   EYGFELRTRRLCRQILMFHRLQTLSG-QAKGDDEPALVSRLILDYDENAMVSTLVSVRRV  358

Query  363   AYETDATLIALPPLEFDYQRFEAKVTQKWQEMPQLAGLNAQQPYQLVDLYGEGISGILYQ  422
             + E + T+ ALPPLE+ YQ FE+  T  WQ M  LA +N+ Q  QL+DL GEG++GILYQ
Sbjct  359   GHEDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPGILYQ  418

Query  423   DRPGAWWYQAPIRQKSVEDINAVTYSPVKPLPKIPSQQDRATLMDIDGDGHLDWVITGAG  482
             DR G WWY+++ RQ + E++NAVT + ++ LP  P+ QD A+LMDI+GDG+LDWVITG+G
Sbjct  419   DRNG-WWYRSAQRQAG-EEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITGPG  476

Query  483   IQGRHSMQPNGEWTHFIPISALPTEYFHPQAQLADLVGAGLSDLALIGPRSVRLYANDRG  542
             ++G HS +P+G WT+F P+ ALP EY HP+AQLADL+GAGLSDL LIGP+SVRLY N+R+
Sbjct  477   LRGYHSQHPDGSWTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSVRLYVNNRD  536

Query  543   NWKAGINVMPPDGVNLPTFGGDASSLVAFSDMLGSGQQHLVEIAAQSVKCWPNLGHGRFG  602
                 G +V+ ++++ LP  G+DA  LVAFSD+LGSGQ HLVE++A  V CWPNLGHGRFG
Sbjct  537   GFTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWPNLGHGRFG  596

Query  603   EAILLPGFSQPSGIFNANQVFLADLDGSGTADIIYAHSKYLEIYLNESGNRFSAPVRLDL  662
             ++I+LPGFSQ+++ FN+++V LADLDGSG AD+IY H+  L+I+ NESGN F+ P  L +
Sbjct  597   QPIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGFAKPFTLSF  656

Query  663   PKGVMFDNTCQLQVSDIQGLGAASIVLTVPHMAPRHWRYDFTYNKPWLLNVINNNSGAET  722
             P G+ FD+TCQLQV+D+QGLG  S++L+VPHMAP+HWR D+T  KPWLL+  NNN GA+ 
Sbjct  657   PDGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSETNNNMGANH  716

Query  723   TLFYRSSAQFWLDEKSQIEESGKFAASYLPFPIHLLWRNEVLDEITGNRLTKGMSYAHGA  782
             TL YRSS QFWLDEK+    +G+ +  YLPFP+H LW+ E  DEI+GN+L   + YAHGA
Sbjct  717   TLHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVTTLRYAHGA  776

Query  783   WDGREREFCGFGRVTQIDTDEFAKGTT-EKTPDENIYPSRSISWFSTGLPEVDSQLPAEY  841
             WDGREREF GFG V Q D++++A+G + E+TP     P+ + SW++TGLP VD+ L+A Y
Sbjct  777   WDGREREFRGFGYVEQTDSHQLAQGNAPERTP-----PALTKSWYATGLPAVDNALSAGY  831

Query  842   WRGDDQAFAGFTPRFTRYEKADAGQAGQDIPIKEPTETEAYWLNRAMKGQLLRSEVYGDD  901
             WRGD QAFAGFTPRFT        + G+D+P+    + + YWLNRA+KGQ LRSE+YG D
Sbjct  832   WRGDKQAFAGFTPRFTLW------KEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLD  885

Query  902   KTENAKIPYTVTEARCQVRLIPSNDEAAPSSWASIIENRSYHYERIVVDPSCKQQVVLNA  961
              + + +IPYTVTE+R QVR +      +P  WAS++E+RSYHYERI+ DP C+Q++ L++
Sbjct  886   GSAQQQIPYTVTESRPQVRQLQDGATVSPVLWASVVESRSYHYERIISDPQCNQDITLSS  945

Query  962   DEYGFPQAKVDIAYPRRNKPTQNPYPDSLPDTLFADSYDDqqkqlyltkqqqsyyHLTHQ  1021
             D +G P  +V + YPRRNKPT NPYPD+LPDTLFA SYDDQQ+ L LT +Q S  HL  +
Sbjct  946   DLFGQPLKQVSVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLIGN  1005

Query  1022  DDWVLGLTDTRYSEVYHYAQTDAQSDIPKAGLTLEDLLKVDGLIGKDKTFSYLGQQRVAY  1081
             + +VLGL D   S+ + Y       ++P  GL LE L   ++LI+ DK   YL QQR  Y
Sbjct  1006  ELRVLGLPDGTRSDAFTYDAK----QVPVDGLNLETLCAENSLIADDKPREYLNQQRTFY  1061

Query  1082  VGGDAE----KPTRQVRVAYTETAAFDDNALHAFDGVMTSAELTQQLLAGGYLYVPQVSD  1137
              +G  +     PTRQ  +A+TETA + ++ L AFDG +T+ EL   L  +GY   P +  
Sbjct  1062  TDGKNQTPLKTPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFP  1121

Query  1138  AAGSSGKVWVARQGYTEYGDASQFYRPLTQRKSLLTGKYTLSWDTHYCVVVKTEDGAGMT  1197
              +G + KVWVARQGYT+YG  +QF RP++QR+SLLTGK TL WDTHYCV+ +T+D+AG+T
Sbjct  1122  RTGEN-KVWVARQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLT  1180

Query  1198  TQAKYDYRFLLPAQLTDINDNQHIVTFNALGQVTSSRFWGTENGKMSGYSTPENKPFTVP  1257
               A+YD RFL P+QLTDINDN H++T++ALG+  + RFWG E+G  +GYS++E+KPF+ P
Sbjct  1181  VSANYDWRFLTPTQLTDINDNVHLITLDALGRPVTQRFWGIESGVATGYSSSEEKPFSPP  1240

Query  1258  DTVEKAFALQPAIPVSQCNIYVPDSWMRLLPQQSLTGRLKEGETLWNVLYRAGVVTEDGL  1317
             + ++ A+ L  ++PV+QC +Y PDSWM L++Q+++    +E +   + L  + ++TED  
Sbjct  1241  NDIDTAINLTGPLPVAQCLVYAPDSWMPLFSQETFNTLTQEEQ---ETLRDSRIITEDWR  1297

Query  1318  LCELACRRWLNRQTTSSMAAVTLQQILAQTPRQPPHAMTITTDRYDSDSQQQLRQSIALS  1377
             +C L+ RRWL+ Q  S+     L ++L+++   PPH +T+TTDRYD DS+QQ+RQ +A+S
Sbjct  1298  ICALTRRRWLQSQKIST----PLVKLLTNSIGLPPHNLTLTTDRYDRDSEQQIRQQVAFS  1353

Query  1378  DGFGRVLQSAQRHEAGKAWQRAEDGSLVVDSTGKPVVADTTTRWAVSGRTEYDGKGQTIR  1437
             DGFGR+LQ++ RHEAG AWQR +DGSLV        V +T TRWAV+GRTEYD KGQTIR
Sbjct  1354  DGFGRLLQASVRHEAGEAWQRNQDGSLVTK------VENTKTRWAVTGRTEYDNKGQTIR  1407

Query  1438  AYLPYYLNDWRYVSDDSARDDLYADTHFYDPLGREYQVKTAKGFWRENRFMPWFVVNEDE  1497
             +Y PY+LNDWRYVSDDSAR + YADTH+YDP+GRE +V TAKG  R++++ PWF V+EDE
Sbjct  1408  TYQPYFLNDWRYVSDDSARKEAYADTHIYDPIGREIRVITAKGWLRQSQYFPWFTVSEDE  1467

Query  1498  NDTAA  1502
             NDTAA
Sbjct  1468  NDTAA  1472

9) tcaC in NC_013892


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1332 bits (5056),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 823/1485 (56%), Positives = 1119/1485 (76%), Gaps = 21/1485 (1%)

Query  1     MQNTAPLQIGTPSLPKGGGTLRGMGETFTGGGPDGMATLSLPLPISSGRGTAPALSLTYS  60
             MQN+  + +   SLPKGGG++ GMGE++T +GPDGMA+LSLPLPIS+GRG AP+L+L Y+
Sbjct  1     MQNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYN  60

Query  61    SGSGNGAFGMGWHCATLAVSLRTSHGVPRYEGNDTFLSPMGDVMQVAPNEQGKPDIRTTN  120
             SG+GN++FG+GW+C+ +A+  RTS GVP Y+  DTFL+P G+V+ VA NE G++DIR+ +
Sbjct  61    SGTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSES  120

Query  121   QLQGVTLDESWQVTRYQPRIIHDFSRLEYWQPEQGNTQKPFWVMFSLEGQVHLFGKNAHA  180
              LQG+ L+ +  VT Y++R+  +F+RLEYWQP Q      FW+++S +GQVHL+GKN++A
Sbjct  121   SLQGINLGATFTVTCYRSRLESHFNRLEYWQP-QTTGATDFWLIYSPDGQVHLLGKNPQA  179

Query  181   RMANPADDNQIAQWLLEETVTPTGEHVYYQYCAEDDAGCDEPEKGQHPLSGAQRYLMQVH  240
             R++NP + NQ AQWLLE ++++ +E++YYQY AED+AGC+  E + HP +  QRYL  VH
Sbjct  180   RISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCETDELAAHPSATVQRYLQTVH  239

Query  241   YGNITPQASLFALDKALPANDQWLFHLVFDYGERAGSLYDVPAFQATSGNWPVRPDCFSR  300
             YGN+T+   + +L+   P +  W+F LVFDYGER  SL ++P F+AT GNW  R D FSR
Sbjct  240   YGNLTASDVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKAT-GNWLCRKDRFSR  298

Query  301   FEYGFEMRTRRLCRQVLMFHRLKALAGEDTAPETPALVSRLMLAYDLNHCVSTLVSARQV  360
             +EYGFE+RTRRLCRQ+LMFHRL++L+G+  + + PALVSRL+L YD N  VSTLVS R+V
Sbjct  299   YEYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVSVRRV  358

Query  361   AHENDGAPVTLPPLELDYQRLDTASLPVWQPMPQLDKLNHLQPYQFVDLYGEGLPGILYQ  420
             +HE++ +  +LPPLEL YQ ++    ++WQ+M  L ++N +Q  Q++DL GEG+PGILYQ
Sbjct  359   GHEDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPGILYQ  418

Query  421   DAPHAWWYRSPIRDTTAEARDTVAYGEIKPLPQIPAQQNNTSLMDINGDGKLDWVVTSAG  480
             D  ++WWYRS+ R++ +E  ++V+ G ++ LP  PA Q+N+SLMDINGDG+LDWV+T++G
Sbjct  419   D-RNGWWYRSAQRQA-GEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITGPG  476

Query  481   VNGYHTMAPNGQWSPFVPLSALPVEYFHPqaqladltgagladlVMIGPRSVRLYANQPT  540
             + GYH+  P+G W+ F PL ALP+EY HP+AQLADL GAGL+DLV+IGP+SVRLY N+  
Sbjct  477   LRGYHSQHPDGSWTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSVRLYVNNRD  536

Query  541   GWKKGNTVIQSDGMTLPIPGADARKLVAFADMLGSGQQHLVEISADGVTCWPNLGHGRFG  600
             G   G  V+QS+++TLP+PGADARKLVAF+D+LGSGQ HLVE+SA  VTCWPNLGHGRFG
Sbjct  537   GFTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWPNLGHGRFG  596

Query  601   HPIRLAGLTVSAKNFNPDQVYLADIDGSGTTDILYVHSTYLELFMNESGNQFAAPVRINL  660
             +PI L+G++ SA +FNPD+V LAD+DGSG +D++YVH+  L++F NESGN FA P  +++
Sbjct  597   QPIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGFAKPFTLSF  656

Query  661   PEHVRFDRACQLHIADTQGLGVSSIILTVPHMTVRHWRLDMTQHKPGLLNTINNNMGAET  720
             P+ +RFD +CQL++AD QGLGV S+IL+VPHM+ +HWR D+T+ KP LL+  NNNMGA+ 
Sbjct  657   PDGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSETNNNMGANH  716

Query  721   TLFYRSSAQFWLDEKHQAENVGRAVTSYLPFPVHVLWRAKVLDEITGNRLTSEQDYAHGA  780
             TL YRSS QFWLDEK  A   G++   YLPFPVH LW++   DEI+GN+L +   YAHGA
Sbjct  717   TLHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVTTLRYAHGA  776

Query  781   WDgrerefrgfgrVSQKDTDKLAQATDSSVTDPLSPAITISWFATGVPTVDARLAEEFWQ  840
             WDGREREFRGFG V Q D+++LAQ+  +   +  +PA+T SW+ATG+P+VD  L+  +W+
Sbjct  777   WDGREREFRGFGYVEQTDSHQLAQGNAP---ERTPPALTKSWYATGLPAVDNALSAGYWR  833

Query  841   GDKQAFPPFTCRFTHFDLDKEQDVTLVPSTEEA-YWLHRALQGQPLHSEVYGDDGTAQAG  899
             GDKQAF+ FT RFT    +K  DV L P  ++  YWL+RAL+GQPL+SE+YG DG+AQ  
Sbjct  834   GDKQAFAGFTPRFTLWKEGK--DVPLTPEDDHNLYWLNRALKGQPLRSELYGLDGSAQQQ  891

Query  900   IPYTVMDSRPQVRLLTGLPGNSSTVWPSVIEQRTWQYEQIADDPQCHQQVVLNSDRYGFP  959
             IPYTV +SRPQVR L + +  S+ +W+SV+E R+ +YE+I  DPQC+Q++ L+SD +G P
Sbjct  892   IPYTVTESRPQVRQLQDGATVSPVLWASVVESRSYHYERIISDPQCNQDITLSSDLFGQP  951

Query  960   RETVDIAYPRRPKPAVSPYPDTLPATLFDSSYDEqqqqlrltrqrqrYHHLADTEYQVLG  1019
                V + YPRR KP+ +PYPDTLP TLF SSYD+QQQ LRLT ++   HHL + E +VLG
Sbjct  952   LKQVSVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLIGNELRVLG  1011

Query  1020  LPDVVRSDAWAYPAERVPREGFTLEDLLAENSLIAPGTPLTYVGHQRVAYTGTTGTE--E  1077
             LPD  RSDA +Y A +VP +G+ LE L AENSLIA + P  Y+ +QR  YT+        
Sbjct  1012  LPDGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTDGKNQTPLK  1071

Query  1078  KPTRQALVAYTETAVFDELALQAFNGALSPEALEKKLIESGYLHVSRPLNTGAESAVWVA  1137
              PTRQAL+A+TETAV+ E  L AF+G+++P+ L   L ++GY + +  +   +E+ VWVA
Sbjct  1072  TPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRTGENKVWVA  1131

Query  1138  RQGYTDYGGAEAFYRPLAQRTTVQIGKNTLHWDTHYCAVIRMQDAAGLYTDAAYDYRFLT  1197
             RQGYTDYG    F RP+AQR ++  GK TL WDTHYC + + QDAAGL   A YD RFLT
Sbjct  1132  RQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSANYDWRFLT  1191

Query  1198  PVQITDANDNQQHITLTALGQVSSGRFWGTEAGTAQGYTPPEDRPFTPPSSVEEALDLKP  1257
             P Q+TD NDN + ITL ALG+  + RFWG E+G A GY+++E++PF+PP+ ++ A++L  
Sbjct  1192  PTQLTDINDNVHLITLDALGRPVTQRFWGIESGVATGYSSSEEKPFSPPNDIDTAINLTG  1251

Query  1258  DLPVANCRVYAPLSWMPL-AHTCQEYIAGFTGQALLDAGVVTEDKRVCALGFRRWVQRQG  1316
              LPVA+C VYAP SWMPL ++   + ++    ++L D+ ++TED R+CAL  RRW+Q Q 
Sbjct  1252  PLPVAQCLVYAPDSWMPLFSQETFNTLTQEEQETLRDSRIITEDWRICALTRRRWLQSQK  1311

Query  1317  IVLN-GQALADSRE-PVHVLTLATDRYDTDPDQQLRKSVTYSDGFGRLLQSAIYHAPGEA  1374
             I     + L++S   P H LTL+TDRYD D++QQ+R+ V++SDGFGRLLQ+++ H +GEA
Sbjct  1312  ISTPLVKLLTNSIGLPPHNLTLTTDRYDRDSEQQIRQQVAFSDGFGRLLQASVRHEAGEA  1371

Query  1375  WQRAADGSLITDEKGAPLVAHTPTRWAVSGRTEYDGKGQPVRTYQPFFLNAWQYLSDDSA  1434
             WQR  DGSL+T       V +T TRWAV+GRTEYD KGQ +RTYQP+FLN W+Y+SDDSA
Sbjct  1372  WQRNQDGSLVTK------VENTKTRWAVTGRTEYDNKGQTIRTYQPYFLNDWRYVSDDSA  1425

Query  1435  RQDLYADTHCYDPLGREYQVRTAKGYLRQNLLTPWFVVNEDENDT  1479
             R++ YADTH YDP+GRE +V TAKG LRQ+   PWF V+EDENDT
Sbjct  1426  RKEAYADTHIYDPIGREIRVITAKGWLRQSQYFPWFTVSEDENDT  1470

10) xptC1 in NC_014228


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1219 bits (4623),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 747/1485 (51%), Positives = 1058/1485 (72%), Gaps = 48/1485 (3%)

Query  1     MGEALNAVGAEGGASFSLPLPISVGRGLVPVLSLNYSSTAGNGSFGMGWQCGVGFISLRT  60
             MGEAL + G++G A++SLPLPIS GRG  P L+LNY+S +GN++FG+GW+CGV  I  RT
Sbjct  24    MGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNSGTGNSPFGLGWDCGVMAIRRRT  83

Query  61    AKGVPHYTGQDEYLGPDGEVLSIVPDSQGQPEQRTATSLLGTVLTQPHTVTRYQSRVAEK  120
             + GVP+Y   D +LGP+GEVL +  +  GQ++ R+ +SL G  L    TVT Y+SR+   
Sbjct  84    STGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESSLQGINLGATFTVTCYRSRLESH  143

Query  121   IVRLEHWQPQQRREEETSFWVLFTADGLVHLFGKHHHARIADPQDETRIARWLMEETVTH  180
             + RLE WQPQ      T FW+++++DG VHL+GK+ +ARI++P +  + A+WL+E +++ 
Sbjct  144   FNRLEYWQPQT--TGATDFWLIYSPDGQVHLLGKNPQARISNPLNVNQTAQWLLEASISS  201

Query  181   TGEHIYYHYRAEDDLDCDEHELAQHSGVTAQRYLAKVSYGNTQPETAFFAVKSGIPADND  240
              +E+IYY+YRAED+ +C+ +ELA H++ T QRYL  V YGN  +   F +++++ P  ++
Sbjct  202   HSEQIYYQYRAEDEAGCETDELAAHPSATVQRYLQTVHYGNLTASDVFPTLNGDDPLKSG  261

Query  241   WLFHLVFDYGERSSSLnsvpefnvsennvsennvsennvseKWRCRPDSFSRYEYGFEIR  300
             W+F LVFDYGER +SL+ +P F+ +                +W CR D FSRYEYGFE+R
Sbjct  262   WMFCLVFDYGERKNSLSEMPLFKATG---------------NWLCRKDRFSRYEYGFELR  306

Query  301   TRRLCRQVLMFHQLKALAGEKVAEETPALVSRLILDYDLNNKVSLLQTARRLAHETDGTP  360
             TRRLCRQ+LMFH+L++L+G+  +++ PALVSRLILDYD N  VS L + RR++HE + T 
Sbjct  307   TRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVSVRRVGHEDNNTV  366

Query  361   VMMSPLEMDYQRVNHGVNLNWQSMPQLEKMNTLQPYQLVDLYGEGISGVLYQDTQKAWWY  420
               ++PLE+ YQ  +      WQSM  L + NT+Q  QL+DL GEG++G+LYQD +++WWY
Sbjct  367   TALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPGILYQD-RNGWWY  425

Query  421   RAPVRDITAEGTNAVTYEEAKPLPHIPAQQESAMLLDINGDGRLDWVITASGLRGYHTMS  480
             R++ R+ ++E  NAVT    + LP  PA Q++A L+DINGDG+LDWVIT++GLRGYH+  
Sbjct  426   RSAQRQ-AGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITGPGLRGYHSQH  484

Query  481   PEGEWTPFIPLSAVPMEYFHPQAKLADIDGAGLPDLALIGPNSVRVWSNNRAGWDRAQDV  540
             P+G WT F PL A+P+EY HP+A+LAD+ GAGL+DL LIGP+SVR+  NNR G   ++DV
Sbjct  485   PDGSWTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSVRLYVNNRDGFTEGRDV  544

Query  541   IHLSDMPLPVPGRNERHLVAFSDMTGSGQSHLVEVTADSVRYWPNLGHGKFGEPLMMTGF  600
             ++ +D+ LP+PG + R LVAFSD+ GSGQ+HLVEV+A  V  WPNLGHG+FG+P+++ GF
Sbjct  545   VQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWPNLGHGRFGQPIVLPGF  604

Query  601   QISGETFNPDRLYMVDIDGSGTTDFIYARNTYLELYANESGNHFAEPQRIDLPDGVRFDD  660
               S+ +FNPDR+ + D+DGSG +D+IY +   L++++NESGN FA P  + +PDG+RFDD
Sbjct  605   SQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGFAKPFTLSFPDGLRFDD  664

Query  661   TCRLQIADTQGLGTASIILTIPHMKVQHWRLDMTIFKPWLLNAVNNNMGTETTLYYRSSA  720
             TC+LQ+AD QGLG  S+IL++PHM  +HWR D+T  KPWLL+  NNNMG++ TL YRSS 
Sbjct  665   TCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSETNNNMGANHTLHYRSSV  724

Query  721   QFWLDEKLQASESGMTVVSYLPFPVHVLWRTEVLDEISGNRLTSHYHYSHGAWDGLEREF  780
             QFWLDEK  A  +G T V YLPFPVH LW+TE  DEISGN+L +  +Y+HGAWDG EREF
Sbjct  725   QFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVTTLRYAHGAWDGREREF  784

Query  781   RGFGRVTQTDIDSRASATQGTHAEPPAPSRTVNWYGTGVREVDILLPTEYWQGDQQAFPH  840
             RGFG V QTD +     +QG  +E  +P+ T +WY+TG+  VD  L++ YW+GD+QAF+ 
Sbjct  785   RGFGYVEQTDSH---QLAQGNAPERTPPALTKSWYATGLPAVDNALSAGYWRGDKQAFAG  841

Query  841   FTPRFTRYDEKSGGDMTVTPSEQEE-YWLHRALKGQRLRSELYGDDDSILAGTPYSVDES  899
             FTPRFT    K G D+ +TP ++++ YWL+RALKGQ LRSELYG D+S     PY+V ES
Sbjct  842   FTPRFTLW--KEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLDGSAQQQIPYTVTES  899

Query  900   RTQVRLLPVMVSDVPAVLVSVAESRQYRYERVATDPQCSQKIVLKSDALGFPQDNLEIAY  959
             R QVR L    +  P +  SV ESR Y+YER+ +DPQC+Q I L SD +G P  ++ + Y
Sbjct  900   RPQVRQLQDGATVSPVLWASVVESRSYHYERIISDPQCNQDITLSSDLFGQPLKQVSVQY  959

Query  960   SRRPQPEFSPYPDTLPETLFTSSFDEQQMFLRLTRQRSSYHHLNHDDNTWITGLMDTSRS  1019
             +RR +P  +PYPDTLP+TLF+SS+D+QQ +LRLT ++SS HHL  +++ ++ GL D +RS
Sbjct  960   PRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLI-GNELRVLGLPDGTRS  1018

Query  1020  DARIYQADKVPDGGFSLEWFSatgagalllpdaaadylgHQRVAYTGPEEQ-----PAIP  1074
             DA  Y+A +VP +G++LE  +  +  +L+  D + +YL +QR  YT+  +Q     P+  
Sbjct  1019  DAFTYDAKQVPVDGLNLE--TLCAENSLIADDKPREYLNQQRTFYTDGKNQTPLKTPTRQ  1076

Query  1075  PLVAYIETAEFDERSLAAFEEVMDEQELTKQLNDAGWNTAKVPFSEKTDFHVWVGQKEFT  1134
             +L+A+ ETA + E  L+AF+  +  +EL   L +AG +     F+   +  VWV+++ +T
Sbjct  1077  ALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRTGENKVWVARQGYT  1136

Query  1135  EYAGADGFYRPLVQRETKLTGKTTVTWDSHYCVITATEDAAGLRMQAHYDYRFMVADNTT  1194
             +Y+    F RP+ QR++ LTGK T+ WD+HYCVIT T+DAAGL + A+YD RF+ + + T
Sbjct  1137  DYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSANYDWRFLTPTQLT  1196

Query  1195  DVNDNYHTVTFDALGRVTSFRFWGTENGEKQGYTPAENETVPFIVPTTVDDALALKPGIP  1254
             D+NDN H +T+DALGR  + RFWG E+G   GY+++E+   PF  P  +D A+ L   +P
Sbjct  1197  DINDNVHLITLDALGRPVTQRFWGIESGVATGYSSSEEK--PFSPPNDIDTAINLTGPLP  1254

Query  1255  VAGLMVYAPLSWM---VQASFSN-DGELYGELKPAGIITEDGYLLSLAFRRW-QQNNPAA  1309
             VA  +VYAP SWM    Q +F+    E    L+ + IITED  + +L+ RRW Q ++ ++
Sbjct  1255  VAQCLVYAPDSWMPLFSQETFNTLTQEEQETLRDSRIITEDWRICALTRRRWLQSQKIST  1314

Query  1310  AMPKQVNSQN--PPHVLSVITDRYDADPEQQLRQTFTFSDGFGRTLQTAVRHESGEAWVR  1367
             ++ K + +    PPH L++ TDRYD D+EQQ+RQ  +FSDGFGR LQ++VRHE+GEAW R
Sbjct  1315  PLVKLLTNSIGLPPHNLTLTTDRYDRDSEQQIRQQVAFSDGFGRLLQASVRHEAGEAWQR  1374

Query  1368  DEYGAIVAENHGAPETAMTDFRWAVSGRTEYDGKGQALRKYQPYFLNSWQYVSDDSARQD  1427
             ++ G++V+  + +        RWAV+GRTEYD KGQ++R YQPYFLN W+YVSDDSAR++
Sbjct  1375  NQDGSLVTKVENTKT------RWAVTGRTEYDNKGQTIRTYQPYFLNDWRYVSDDSARKE  1428

Query  1428  MYADTHYYDPLGREYQVITAKGGFRRSLFTPWFVVNEDENDTAGE  1472
              YADTH YDP+GRE +VITAKG +R+S + PWF V+EDENDTA++
Sbjct  1429  AYADTHIYDPIGREIRVITAKGWLRQSQYFPWFTVSEDENDTAAD  1473

11) YpsIP31758_0414 in NC_009708


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1209 bits (4586),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 763/1518 (51%), Positives = 1066/1518 (71%), Gaps = 66/1518 (4%)

Query  3     NSKQQVAVAPLSLPKGGGAITGMGDSLGAIGPSGMATLTLPLPISAGRGYAPPLALNYSS  62
             ++ Q  +V+ LSLPKGGGAITGMG++L + GP GMA+L+LPLPISAGRGYAP+L+LNY+S
Sbjct  2     QNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNS  61

Query  63    GNGNGPFGLGWQLNTMAICRRTSKRVPHYDEHDEFLAPSGEVLVVAIDQQGNIE-RTEQS  121
             G GN+PFGLGW+   MAI RRTS  VP+YDE D FL+P GEVLVVA+++ G+ + R+E S
Sbjct  62    GTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESS  121

Query  122   LKG----EQFSVIRYLPRIEGSFNRIEYWQPRVDNSQAPFWVVHGSDGQKHCLGYSASAR  177
             L+G      F+V  Y +R+E+ FNR+EYWQP+   + + FW++ ++DGQ H LG ++ AR
Sbjct  122   LQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGA-TDFWLIYSPDGQVHLLGKNPQAR  180

Query  178   IADPQHPEHIAEWLLEESVSLSGEHICYLYQAEDEQGIDEDEKQNHPAASAQRYLSTVVY  237
             I++P + ++ A+WLLE S+S  +E+I Y Y+AEDE G + DE   HP+A+ QRYL TV Y
Sbjct  181   ISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCETDELAAHPSATVQRYLQTVHY  240

Query  238   GNREVAHELYCLT-QQPTEKSWLFSLIFDHGEYSNIADQVPIAEEGKSWTYRQDAFSHFN  296
             GN   ++ +  L  ++P   +W+F L+FD GE  N   ++P+     +W  R+D FS+++
Sbjct  241   GNLTASDVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRKDRFSRYE  300

Query  297   YGFEIRTRRLCQQVLMYHNLSALAGNE-PDQQPTLVSRLRLNYQHDVYATQLVGCQRLAH  355
             YGFE+RTRRLC+Q+LM+H L +L+G+   D++P+LVSRL L+Y+++   + LV+ +R++H
Sbjct  301   YGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVSVRRVGH  360

Query  356   EPKGKTCSLPPLEFDYQTFPDNNEKPYWQQRLEEINPTESDDQDLSANWQPLEDWAEFN-  414
             E +    +LPPLE+ YQ F                      + + +A WQ+++  A+FN 
Sbjct  361   EDNNTVTALPPLELAYQPF----------------------EPEQTALWQSMDVLANFNT  398

Query  415   -HQYQMVDLNGEGIPGMLYQDRGHWCYRPPVRQPGT-LNGITFGPAQSLPTLPAMGENAT  472
              ++ Q++DL+GEG+PG+LYQDR  W YR++ RQ+G  +N++T G  Q LP  PA+ +NA+
Sbjct  399   IQRWQLLDLKGEGVPGILYQDRNGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNAS  458

Query  473   LMDINGDGKLDWVISQPGLAGYFSRDPDQSWTQFTPLSALPAEYFHPQAQLADLIGSGLS  532
             LMDINGDG+LDWVI+ PGL GY S++PD SWT+FTPL ALP EY HP+AQLADL+G+GLS
Sbjct  459   LMDINGDGQLDWVITGPGLRGYHSQHPDGSWTRFTPLHALPIEYSHPRAQLADLMGAGLS  518

Query  533   DLALIGPKSVRLYANQRDGFAAATQVTQDDDITLPLSGAHYSELVAFSDVMGSGQQHLVR  592
             DL LIGPKSVRLY N+RDGF+ + +V Q +DITLPL+GA+   LVAFSDV+GSGQ HLV 
Sbjct  519   DLVLIGPKSVRLYVNNRDGFTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVE  578

Query  593   VRHNSVTCWPNLGHGRFGHPISLPGFSQPIEQFNPLAIHLADIDGSGTVDLIYATAHQLL  652
             V    VTCWPNLGHGRFG+PI LPGFSQ+   FNP  +HLAD+DGSG  DLIY  A++L 
Sbjct  579   VSATQVTCWPNLGHGRFGQPIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLD  638

Query  653   IYRNQSGNRFAKPLEVTLPAGVRFDNSCQLSLADIQGLGVASIILSVPHPAPQHWRYDFV  712
             I+ N+SGN FAKP+ +++P G+RFD++CQL +AD+QGLGV S+ILSVPH AP+HWR D+ 
Sbjct  639   IFSNESGNGFAKPFTLSFPDGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLT  698

Query  713   ASKPYLLCTTNNNMGAESQLFYRSSVQFWLDEKAQAAKQGRTLVCQLPFPIHLLAQTTQF  772
              +KP LL  TNNNMGA+  L YRSSVQFWLDEKA A   G+T VC LPFP+H L QT   
Sbjct  699   NAKPWLLSETNNNMGANHTLHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETE  758

Query  773   DEITGNSLSQTARYFHGFYDGIQREFCGFGRVDTLDTNTSAQGSAAERTSPTQTCQWFHT  832
             DEI+GN L  T RY HG  DG +REF GFG V+  D++  AQG+A+ERT+P+ T  W+ T
Sbjct  759   DEISGNKLVTTLRYAHGAWDGREREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYAT  818

Query  833   GQPGNEQLWHHEYWQGDSQAYGLLSTRLTKFTGEMQGDETLNDINDNQAYWLHRALKGSL  892
             G P+ ++     YW+GD QA++ ++ R+T        D  L   +D++ YWL+RALKG  
Sbjct  819   GLPAVDNALSAGYWRGDKQAFAGFTPRFTLWKEGK--DVPLTPEDDHNLYWLNRALKGQP  876

Query  893   LRSELYGLDGSELATQPYSVNSARYQVRQIQSSTDEITSPVALPMMLEQLNYHYERIVQD  952
             LRSELYGLDGS     PY+V  +R QVRQ+Q ++    SPV  + ++E  +YHYERI+ D
Sbjct  877   LRSELYGLDGSAQQQIPYTVTESRPQVRQLQDGA--TVSPVLWASVVESRSYHYERIISD  934

Query  953   PQCNQQIVLRCDEFGHPLHSATIYYPRRDKASIPPYS-WLAEGHWDSHFDEQQQQLRITE  1011
             PQCNQ+I L  D FG+PL   ++ YPRR+K++  PY+  L++    S +D+QQQ LR+T 
Sbjct  935   PQCNQDITLSSDLFGQPLKQVSVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTC  994

Query  1012  SQQSYRHEISDKFYVLGLPAGQRSDVLTYPDNFVPTAGIHWEELQQPEGLLGTKAERTFA  1071
              Q S +H I++ + VLGLP G RSD +TY  + VP  G++ E L   ++L++    R + 
Sbjct  995   RQSSWHHLIGNELRVLGLPDGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYL  1054

Query  1072  GQQQVFYASD---------TIPGLVAYSQQAEFDDQTLAALDELLPTNERKQQLIEAGYQ  1122
              QQ+ FY+ +         T  +L+A+++ A + +  L+A+D  +  +E    L +AGYQ
Sbjct  1055  NQQRTFYTDGKNQTPLKTPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQ  1114

Query  1123  RAPRLFSRPGETDIWAAQRGFTDYGDASRFYRPISQRSSPLVGKTALEWDKNSCAITQMI  1182
             + P LF+R GE  +W A++G+TDYG  ++F RP++QR+S L GK +L WD + C ITQ  
Sbjct  1115  QEPYLFPRTGENKVWVARQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQ  1174

Query  1183  LADGSTTQAEYDYRFITPYHLTDINDNSRHIELDALGRVTSSRFWGTELDSQTGEVSTTG  1242
              A G T  A+YD RF+TP +LTDINDN + I LDALGR  + RFWG E         +TG
Sbjct  1175  DAAGLTVSANYDWRFLTPTQLTDINDNVHLITLDALGRPVTQRFWGIE------SGVATG  1228

Query  1243  FPLIAEHPFTVPNSVDAAISMENTQVPVAQFSVYQPQSWMISLQLDDIETLSETNNVTLE  1302
             ++   E PF+ PN +D+AI++    +PVAQ  VY P+SWM  +  + ++TL++ ++ TL 
Sbjct  1229  YSSSEEKPFSPPNDIDTAINL-TGPLPVAQCLVYAPDSWMPLFSQETFNTLTQEEQETLR  1287

Query  1303  YLFQNHILIDNYYLCPLALRRWIRQSNPLITENVGLELKNPVRQPPHVLTVVVDNYFSAA  1362
                +++I+ ++  +C+L+ RRW+ QS+ + T  V L L N++  PPH LT+  D Y   +
Sbjct  1288  ---DSRIITEDWRICALTRRRWL-QSQKISTPLVKL-LTNSIGLPPHNLTLTTDRYDRDS  1342

Query  1363  EPQQHQQTLAFSDGFGRVLQSAQRVEAGTAYFHTGEGGLIADQQGHLMQDESDQRWAVSG  1422
             E Q +QQ +AFSDGFGR+LQ++ R EAG A  +  +G+L++        +++  RWAV+G
Sbjct  1343  EQQIRQQ-VAFSDGFGRLLQASVRHEAGEAWQRNQDGSLVT------KVENTKTRWAVTG  1395

Query  1423  RTEYDNKGLPIRRYQPYFLDDWRYIADDNARKEAWADTHIYDPLGREIKVITAKGYLRRA  1482
             RTEYDNKG  IR YQPYFL+DWRY++DD+ARKEA ADTHIYDP+GREI+VITAKG LR++
Sbjct  1396  RTEYDNKGQTIRTYQPYFLNDWRYVSDDSARKEAYADTHIYDPIGREIRVITAKGWLRQS  1455

Query  1483  HYFPWFVISEDENDTASE  1500
             +YFPWF +SEDENDTA++
Sbjct  1456  QYFPWFTVSEDENDTAAD  1473

12) YE105_C3513 in NC_015224


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1198 bits (4545),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 760/1524 (50%), Positives = 1064/1524 (70%), Gaps = 80/1524 (5%)

Query  3     NNKQQVNVAPLSLPKGGGAIAGMGESLGAIGPSGLASLTVPLPISAGRGYAPALALSYSS  62
             +N Q  +V+ LSLPKGGGAI+GMGE+L + GP G+A+L++PLPISAGRGYAP+L+L+Y+S
Sbjct  2     QNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNS  61

Query  63    GGGNSPFGLGWQMGVLSIRRRTSHGTPRYDDRDEFIGPNGELLVAVSEE-------SEPS  115
             G GNSPFGLGW+ GV++IRRRTS G P YD+ D F+GP+GE+LV   +E       SE+S
Sbjct  62    GTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESS  121

Query  116   KDSRYSTTDFNVTCYQPRIEGGFDRIEFWQPQDAKSGLTAFWLIYGADGQQHCLGKSASA  175
              ++    + F VTCY++R+E+ F+R+E+WQPQ   +G T FWLIY++DGQ H LGK++ A
Sbjct  122   LQGINLGATFTVTCYRSRLESHFNRLEYWQPQ--TTGATDFWLIYSPDGQVHLLGKNPQA  179

Query  176   HIAAPDNPTHIAEWLLQESVSPSGEHICYDYQCENDIGVEAAESAAHPQSSAQHYLQQVR  235
             +I+ P N  + A+WLL+ S+S+ +E+I Y+Y+ E++ G E+ E AAHP ++ Q+YLQ V+
Sbjct  180   RISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCETDELAAHPSATVQRYLQTVH  239

Query  236   YGNVIPSDSLHAFKKPSGKDDNWLFTLVFDYGERPNTLSATPQLHTSDGWSARQDPFSRY  295
             YGN+ +SD + +++        W+F LVFDYGER N+LS  P + +++ W  R+D FSRY
Sbjct  240   YGNLTASDVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRKDRFSRY  299

Query  296   EYGFEIRTRRLCQQVLMFHNLRLLSGDKK-QSEAALVGRLRLNYLSSPYASQLISCQQIA  354
             EYGFE+RTRRLC+Q+LMFH L+ LSG+ K + E+ALV+RL L+Y  ++  S L+S ++++
Sbjct  300   EYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVSVRRVG  359

Query  355   HEPDGSALTLPPLEFDYQEFQAETTASWQAMPEWDTFSPY--YQLVDLNGEGLPGMLYQD  412
             HE + +  +LPPLE+ YQ F++E TA WQ+M     F+     QL+DL+GEG+PG+LYQD
Sbjct  360   HEDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPGILYQD  419

Query  413   SDSWRYHPPVRQPDSE-NGVSYGEAQILPAIPALRDSASLMDINGDGRLDWVISQPGFAG  471
              ++W+Y+++ RQ++ E N+V+ G  Q+LP  PA++D+ASLMDINGDG+LDWVI+ PG+ G
Sbjct  420   RNGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITGPGLRG  479

Query  472   YYSRSPDESWTQFTPLSALPAEYFHPQAQLADLIGDGISDLALIGPNSVRLYANQRDGFA  531
             Y S+ PD SWT+FTPL ALP EY HP+AQLADL+G G+SDL LIGP+SVRLY N+RDGF+
Sbjct  480   YHSQHPDGSWTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSVRLYVNNRDGFT  539

Query  532   TARQVYQDAAIALPIPGASQSELVAFSDPLGSGQQHLLRVRHDSVTCWPNLGHGYFAKPI  591
              +R+V Q + I+LP+PGA    LVAFSD LGSGQ HL+ V    VTCWPNLGHG F++PI
Sbjct  540   EGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWPNLGHGRFGQPI  599

Query  592   HLSGFNQPADTFNPQHIWLADIDGSGTVDLIYAHQNNLLIYRNQSGNGFAEPLKLPLPHG  651
              L+GF+Q+A +FNP+++ LAD+DGSG  DLIY H + L I+ N+SGNGFA P+ L++P+G
Sbjct  600   VLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGFAKPFTLSFPDG  659

Query  652   VRFDNTCQLTLADVQGLGVTSIMLSVPHMTSRHWRYDFVTAKPYLLCTVNNNMGAESQLA  711
             +RFD+TCQL +ADVQGLGV S++LSVPHM+++HWR D+  AKP LL   NNNMGA+  L 
Sbjct  660   LRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSETNNNMGANHTLH  719

Query  712   YRSSAQFWLDEKALAASRKQKIACGLPFPLHLLAHTTQLDEITQNSLCQQASYYHGFYDG  771
             YRSS QFWLDEKA A +  Q   C LPFP+H L +T   DEI+ N L     Y HG  DG
Sbjct  720   YRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVTTLRYAHGAWDG  779

Query  772   VEREFRGFGRVDTLDTHASAQGSATERTAPSSSRSWFHTGRADDEIRYFGEYWQGDERAY  831
              EREFRGFG V+  D+H  AQG+A ERT+P+ ++SW+ TG +  +    + YW+GD +A+
Sbjct  780   REREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPAVDNALSAGYWRGDKQAF  839

Query  832   HLNKTRLTSFNSLTESDDL-LTEITPEQHYWLFRALKGSLLRSELYGLDNSGLDEVPYTT  890
                  R   F    E+ D+ LT    ++ YWL RALKG  LRSELYGLD S+ +++PYT 
Sbjct  840   AGFTPR---FTLWKEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLDGSAQQQIPYTV  896

Query  891   SSARYQVRQVRASAM--PIVMPQALEQLSYHYERIPQDPQYSQQIVMRCNQYGQPLQTVA  948
             + +R QVRQ++ +A   P++ +  +E  SYHYERI  DPQ +Q+I +  + +GQPL+ V+
Sbjct  897   TESRPQVRQLQDGATVSPVLWASVVESRSYHYERIISDPQCNQDITLSSDLFGQPLKQVS  956

Query  949   VNYPRRAQDSVSPYS-WLATANWASSYDEQQLLLRISESQQTYLNIVEDSALLLGLPKQQ  1007
             V+YPRR + + +PY+  L+ +  ASSYD+QQ LLR++  Q +  +++ +   +LGLP   
Sbjct  957   VQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLIGNELRVLGLPDGT  1016

Query  1008  RSDAITYAADIVPLNGLSYEILIEREKSLGDPIENVFAGQSEVFY---HPKYRL-----Q  1059
             RSDA+TY A  VP++GL+ E L   +  ++D     +  Q   FY     +  L     Q
Sbjct  1017  RSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTDGKNQTPLKTPTRQ  1076

Query  1060  GLAIYGETAEFDDISLIALD-DMLPAGLARDEQLISAGYKKAPRLFARTDETDVWVAKRG  1118
             +L  + ETA + +  L A+D ++ P  L+    L  AGY++ P LF+RT+E  VWVA++G
Sbjct  1077  ALIAFTETAVLTESLLSAFDGGITPDELP--GILTQAGYQQEPYLFPRTGENKVWVARQG  1134

Query  1119  LVEYGDASQFYRLQAQQSTELVGKTQLGWDAHYCAVTSITQADGSSTQAEYDYRFIAPYQ  1178
               +YG  +QF R  AQ+++ L GK  L WD+HYC +T   +A G +  A+YD RF++P Q
Sbjct  1135  YTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSANYDWRFLTPTQ  1194

Query  1179  LTDINDNVHYVEFDAFGRVTSTRFWGTELQDGTEVQRGFSPPSAKPFTAPDDIDDAIDLE  1238
             LTDINDNVH + +DA+GR  + RFWG E    + V  G+S++  KPF++P+DID AI+L 
Sbjct  1195  LTDINDNVHLITLDALGRPVTQRFWGIE----SGVATGYSSSEEKPFSPPNDIDTAINL-  1249

Query  1239  SESLPVAQFNIYQPYSWMIAPFTGFINEWLDDLKYRQELAITHPEELSVEWINEPVLTRE  1298
             + +LPVAQ  +Y P SWM  P+            + QE   T  +E            +E
Sbjct  1250  TGPLPVAQCLVYAPDSWM--PL------------FSQETFNTLTQE-----------EQE  1284

Query  1299  ILIQSQFITEEGYLW---TLGSRRWLRQSKY--PLSENMTSEIQFAFRRHPPHAMTVVTD  1353
              L +S++ITE+   W   +L  RRWL+  K   PL   +T+ I +     PPH +T+ TD
Sbjct  1285  TLRDSRIITED---WRICALTRRRWLQSQKISTPLVKLLTNSIGL-----PPHNLTLTTD  1336

Query  1354  RYDTDTEQQHQQVIVFSDGFGRALQSVHRVEPGEAYVCDENGNLTHDENGGPMVNTAGQR  1413
             RYD D+EQQ +Q + FSDGFGR LQ+  R E+GEA   +++G+L         V+ +  R
Sbjct  1337  RYDRDSEQQIRQQVAFSDGFGRLLQASVRHEAGEAWQRNQDGSLV------TKVENTKTR  1390

Query  1414  WAVSGRVEYDNKGLPIRAYQPYFLDNWRYISDDSARQDTYADTHIYDPLGREIEVITAKG  1473
             WAV+GR EYDNKG  IR+YQPYFL++WRY+SDDSAR+++YADTHIYDP+GREI VITAKG
Sbjct  1391  WAVTGRTEYDNKGQTIRTYQPYFLNDWRYVSDDSARKEAYADTHIYDPIGREIRVITAKG  1450

Query  1474  YLRRAHYFPWFVISEDENDTAAET  1497
              LR+++YFPWF +SEDENDTAA++
Sbjct  1451  WLRQSQYFPWFTVSEDENDTAADA  1474

13) YPTS_3739 in NC_010634


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1196 bits (4536),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 751/1497 (51%), Positives = 1058/1497 (71%), Gaps = 46/1497 (3%)

Query  3     NSKQQVAVAPLSLPKGGGAITGMGDSLGPIGPSGMATLTLPLPISAGRGYAPSLTLSYSS  62
             ++ Q  +V+ LSLPKGGGAITGMG++L P GP GMA+L+LPLPISAGRGYAPSLTL+Y+S
Sbjct  2     QNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNS  61

Query  63    GSGNGPFGLGWQLGTMAIRRRTNAQVPRYDEYDEFLAPNGEVMVVAADPQGNIE-RTEQS  121
             G+GN+PFGLGW+ G MAIRRRT++ VP YDE D FL+P+GEV+VVA +  G+ + R+E S
Sbjct  62    GTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESS  121

Query  122   LNG----EQFSVIRYLPRIEGNFHRIEYWRPRANNSQAPFWLVHSSDGQKHGLGYSAAAR  177
             L+G      F+V  Y +R+E++F+R+EYW+P++  + + FWL+ S+DGQ H LG ++ AR
Sbjct  122   LQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGA-TDFWLIYSPDGQVHLLGKNPQAR  180

Query  178   IADPLHPEHIAEWLLEESVSLSGEHICYQYQAEDEQDIDESEKQNHPAASAQRYLSTVVY  237
             I++PL+ ++ A+WLLE S+S  +E+I YQY+AEDE + +  E   HP+A+ QRYL TV Y
Sbjct  181   ISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCETDELAAHPSATVQRYLQTVHY  240

Query  238   GNREVAHELYCLT-QRPAPTSWLFSLIFDHGEYSNIAEQVPVIIKGKSWNFRQDAFSRFS  296
             GN   ++ +  L  + P  ++W+F L+FD GE  N   ++P++    +W  R+D FSR+ 
Sbjct  241   GNLTASDVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRKDRFSRYE  300

Query  297   CGFEVRTRRLCQQVLMYHNLSALKGDE-PDAQATLVSRLRLHYQHDAYATQLVGCQQLAH  355
              GFE+RTRRLC+Q+LM+H L +L G+   D +++LVSRL L+Y+++A  + LV+ ++++H
Sbjct  301   YGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVSVRRVGH  360

Query  356   EPDGTKRSLPPLEFDYQDFSTRDALGWQPLTDWAEFNY--QYQMVDLNGEGIPGMLYQDS  413
             E + T  +LPPLE+ YQ F   ++  WQ++   A+FN   + Q++DL+GEG+PG+LYQD 
Sbjct  361   EDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPGILYQDR  420

Query  414   GHWCYRPPVRQP-DTLDGITFGPAQSLPTLPAMGENATLMDINGDGKLDWVISQPGLAGY  472
               W YR++ RQ+ + ++++T G  Q LP  PA+ +NA+LMDINGDG+LDWVI+ PGL GY
Sbjct  421   NGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITGPGLRGY  480

Query  473   FSRDPDQSWTQFTPLSALPAEYFHPQAQLADLIGSGLSDLALIGPKSVRLYANQRDGFAA  532
              S++PD SWT+FTPL ALP EY HP+AQLADL+G+GLSDL LIGPKSVRLY N+RDGF+ 
Sbjct  481   HSQHPDGSWTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSVRLYVNNRDGFTE  540

Query  533   ATQVTQDDDITLPLSGAHYSELVAFSDVMGSGQQHLVRVRHNSVTCWPNLGHGRFGHPIS  592
             + +V Q +DITLPL+GA+   LVAFSDV+GSGQ HLV V    VTCWPNLGHGRFG+PI 
Sbjct  541   GRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWPNLGHGRFGQPIV  600

Query  593   LPGFNQHIEQFNPLAIYLADIDGSGTIDLIYATASQLLIYRNQSGNRFAEPVAIALPTGI  652
             LPGF+Q    FNP  + LAD+DGSG  DLIY  A +L I+ N+SGN FA P ++++P G+
Sbjct  601   LPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGFAKPFTLSFPDGL  660

Query  653   RFDNSCQLSLADIQGLGVASIMLSVPHPTTQHWRYDFVASKPYLLCTTNNNMGAENQLFY  712
             RFD++CQL +AD+QGLGV S++LSVPH + +HWR D+  +KP LL  TNNNMGA++ L Y
Sbjct  661   RFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSETNNNMGANHTLHY  720

Query  713   RSSVQFWLDEKAQAAKQGQSLACQLPFPIHLLAQTTQLDEITGNSLSQTARYFHGFYDGV  772
             RSSVQFWLDEKA A   GQ+  C LPFP+H L QT   DEI+GN L  T RY HG  DG 
Sbjct  721   RSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVTTLRYAHGAWDGR  780

Query  773   QREFCGFGRVDTLDTDTSAQGSAAERTAPTKSRSWFHTGRADNETLWQSEYWQGDGQDYP  832
             +REF GFG V+  D++  AQG+A+ERT+P+ ++SW+ TG +  +    + YW+GD Q ++
Sbjct  781   EREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPAVDNALSAGYWRGDKQAFA  840

Query  833   LLPTRLTTFINDTQGDDL-LSELDDNQTFWLHRALKGLLLRSELYGLDDSELATQPYSVN  891
              +  R+T      +G D+ L+  DD++ +WL+RALKG  LRSELYGLD+S     PY+V 
Sbjct  841   GFTPRFTLW---KEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLDGSAQQQIPYTVT  897

Query  892   SSRYQVRQIQPSADGISSPVALPIMLEQLSYHYERIVQDPQCSQQIVLRCDEFGHPLHSA  951
              SR QVRQ+Q   ++  SPV  + ++E  SYHYERI+ DPQC+Q+I L  D FG+PL   
Sbjct  898   ESRPQVRQLQ--DGATVSPVLWASVVESRSYHYERIISDPQCNQDITLSSDLFGQPLKQV  955

Query  952   IINYPRRDKYSIPPYS-WLAKEHWDSNFDEQQQQLRITESQQSYHHEISDKFYVLGLPAG  1010
              ++YPRR+K +  PY+  L+     S++D+QQQ LR+T  Q S HH I++ + VLGLP G
Sbjct  956   SVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLIGNELRVLGLPDG  1015

Query  1011  QRSDVLTYPDNFVPTAGIHWEELQQPEGLLGTKAERTFAGQQQVFYTSD---------TI  1061
              RSD +TY  + VP  G++ E L   ++L++    R +  QQ+ FYT +         T 
Sbjct  1016  TRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTDGKNQTPLKTPTR  1075

Query  1062  PGLVAYSQQAEFDDQTLAALDELLPANERKQQLIKAGYQTAPRLFARPGETDIWVAQSGF  1121
              +L+A+++ A + +  L+A+D  + ++E    L +AGYQ  P LF+R GE  +WVA+ G+
Sbjct  1076  QALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRTGENKVWVARQGY  1135

Query  1122  TDYGDASRFYRPISQRSSLLVGKTALGWDKNSCAITQMILADGSTTQAEYDYRFITPYHL  1181
             TDYG  ++F RP++QR+SLL GK +L WD + C ITQ   A G T  A+YD RF+TP +L
Sbjct  1136  TDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSANYDWRFLTPTQL  1195

Query  1182  TDINDNSRHIELDALGRITSSRFWGTELDPQTNKVIETGFPSIAEQPFTPPNSVDDAISL  1241
             TDINDN + I LDALGR  + RFWG E        + TG++S  E+PF+PPN +D AI+L
Sbjct  1196  TDINDNVHLITLDALGRPVTQRFWGIE------SGVATGYSSSEEKPFSPPNDIDTAINL  1249

Query  1242  ENTRIPVAQFSVYQPQSWMISLQRDEIEIWIRVNKITPEYLFQNHILIDNHYLCPLALHR  1301
                 +PVAQ  VY P+SWM  + ++ ++    + +   E L +++I+ ++  +C+L+ +R
Sbjct  1250  TGP-LPVAQCLVYAPDSWMPLFSQETFNT---LTQEEQETLRDSRIITEDWRICALTRRR  1305

Query  1302  WVRQNNLLITEDVGLALEMPMRQPPHILTVVVDNYFSAAEPQQHQQTLAFSDGFGRVLQS  1361
             W++ ++  I+  +   L  ++  PPH LT+  D Y   +E Q +QQ +AFSDGFGR+LQ+
Sbjct  1306  WLQSQK--ISTPLVKLLTNSIGLPPHNLTLTTDRYDRDSEQQIRQQ-VAFSDGFGRLLQA  1362

Query  1362  AQRVEAGTAYFHTGEGGLEMDQQGHLTQDESDKRWAVSGRTEYDNKGLPIRRYQPYFLDG  1421
             + R EAG A  +  +G+L          +++  RWAV+GRTEYDNKG  IR YQPYFL++
Sbjct  1363  SVRHEAGEAWQRNQDGSLVT------KVENTKTRWAVTGRTEYDNKGQTIRTYQPYFLND  1416

Query  1422  WRYIADDSARKEAWANTHIYDPLGREIKVITAKGYLRRTHYFPWFVISEDENDTASE  1478
             WRY++DDSARKEA A+THIYDP+GREI+VITAKG LR+++YFPWF +SEDENDTA++
Sbjct  1417  WRYVSDDSARKEAYADTHIYDPIGREIRVITAKGWLRQSQYFPWFTVSEDENDTAAD  1473

14) YPK_0478 in NC_010465


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1182 bits (4483),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 744/1503 (50%), Positives = 1052/1503 (70%), Gaps = 52/1503 (3%)

Query  3     NSKQQVAVAPLSLPKGGGAITGMGDSLGPIGPSGMATLTLPLPISAGRGYAPSLTLSYSS  62
             ++ Q  +V+ LSLPKGGGAITGMG++L P GP GMA+L+LPLPISAGRGYAPSLTL+Y+S
Sbjct  2     QNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNS  61

Query  63    GSGNGPFGLGWQLGTMAIRRRTNAQVPRYDEYDEFLAPNGEVMVVAADPQGNIE-RTEQS  121
             G+GN+PFGLGW+ G MAIRRRT++ VP YDE D FL+P+GEV+VVA +  G+ + R+E S
Sbjct  62    GTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESS  121

Query  122   LNG----EQFSVIRYLPRIEGNFHRIEYWRPRTNNSQAPFWLVHSSDGQKHGLGYSASAR  177
             L+G      F+V  Y +R+E++F+R+EYW+P+T  + + FWL+ S+DGQ H LG ++ AR
Sbjct  122   LQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGA-TDFWLIYSPDGQVHLLGKNPQAR  180

Query  178   IADPLHPEHIAEWLLEESVSLSGEHICYQYQAEDEQDIDESEKQNHPAASAQRYLSTVVY  237
             I++PL+ ++ A+WLLE S+S  +E+I YQY+AEDE + +  E   HP+A+ QRYL TV Y
Sbjct  181   ISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCETDELAAHPSATVQRYLQTVHY  240

Query  238   GNREVAHELYCLT-QRPAPTSWLFSLIFDHGEYSNIAEQVPVIIKGKSWNFRQDAFSRFS  296
             GN   ++ +  L  + P  ++W+F L+FD GE  N   ++P++    +W  R+D FSR+ 
Sbjct  241   GNLTASDVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRKDRFSRYE  300

Query  297   CGFEVRTRRLCQQVLMYHNLSALKGDE-PDAQATLVSRLRLHYQHDAYATQLVGCQQLAH  355
              GFE+RTRRLC+Q+LM+H L +L G+   D +++LVSRL L+Y+++A  + LV+ ++++H
Sbjct  301   YGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVSVRRVGH  360

Query  356   EPDGTKRSLPPLEFDYQDFSTRDALGWQPLTDWAEFNY--QYQMVDLNGEGIPGMLYQDS  413
             E + T  +LPPLE+ YQ F   ++  WQ++   A+FN   + Q++DL+GEG+PG+LYQD 
Sbjct  361   EDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPGILYQDR  420

Query  414   GHWIYRPPVRQPGTA-DGITFGAAQRLPSLPAMRENAMLMDINGDGKLDWVISQPGLAGY  472
               W YR++ RQ+G   +++T G  Q LP  PA+++NA LMDINGDG+LDWVI+ PGL GY
Sbjct  421   NGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITGPGLRGY  480

Query  473   FSRDPDLSRDPDLSWTQFIPLSTLPAEYFHPQAQLVDLAGSGLSDLALVGPKSVRVYTNL  532
              S++PD S      WT+F PL +LP EY HP+AQL DL G+GLSDL L+GPKSVR+Y N 
Sbjct  481   HSQHPDGS------WTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSVRLYVNN  534

Query  533   CDSFAAATQVAQDDDITLPLPGVHFTELVAFSDVMGSGQQHLVRIRHNSVTCWPNLGHGR  592
              D+F+ + +V Q +DITLPLPG +   LVAFSDV+GSGQ HLV +    VTCWPNLGHGR
Sbjct  535   RDGFTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWPNLGHGR  594

Query  593   FGHPLSLPGFNQPIEQFNPLAIYLADIDGSGTIDLIYATTSQLLIYRNQSGNRFAEPVAI  652
             FG+P+ LPGF+Q+   FNP  + LAD+DGSG  DLIY  + +L I+ N+SGN FA P ++
Sbjct  595   FGQPIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGFAKPFTL  654

Query  653   ALPTGIRFDNSCQLSLADIQGLGVASIMLSVPHPTTQHWRYDFVASKPYLLCTTNNNMGA  712
             ++P G+RFD++CQL +AD+QGLGV S++LSVPH + +HWR D+  +KP LL  TNNNMGA
Sbjct  655   SFPDGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSETNNNMGA  714

Query  713   ESQLFYRSSAQFWLDEKAQAAKQGRSLACQLPFPIHLLAQTTQLDEITGNSLSQTARYFH  772
             +  L YRSS QFWLDEKA A   G++  C LPFP+H L QT   DEI+GN L  T RY H
Sbjct  715   NHTLHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVTTLRYAH  774

Query  773   GFYDGVQREFCGFGRVDTLDTDTSAQGSAAERTAPTKSSNWFHTGRADNETLWQSEYWQG  832
             G  DG +REF GFG V+  D++  AQG+A+ERT+P+ + +W+ TG +  +    + YW+G
Sbjct  775   GAWDGREREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPAVDNALSAGYWRG  834

Query  833   DDQDYPLLPTRLTKFINDTQGDDV-LSELDDNQTFWLHRALKGSLLRSELYGLDGSELAT  891
             D Q ++ +  R+T      +G DV L+  DD++ +WL+RALKG  LRSELYGLDGS    
Sbjct  835   DKQAFAGFTPRFTLW---KEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLDGSAQQQ  891

Query  892   QPYSVNSARYQVRQIQSSTDEITSPVALPMMLEQLNYHYERIVQDPQCNQQIVLRCDEFG  951
              PY+V  +R QVRQ+Q ++    SPV  + ++E  +YHYERI+ DPQCNQ+I L  D FG
Sbjct  892   IPYTVTESRPQVRQLQDGA--TVSPVLWASVVESRSYHYERIISDPQCNQDITLSSDLFG  949

Query  952   HPLHSATIYYPRRDKASIPPYS-WLAEGHWDSHFDEQQQQLRITESQQSYHHEISDKFYV  1010
             +PL   ++ YPRR+K++  PY+  L++    S +D+QQQ LR+T  Q S HH I++ + V
Sbjct  950   QPLKQVSVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLIGNELRV  1009

Query  1011  LGLPAGQRSDVLTYPDNFVPTAGIHWEELQQPEGLLGTKAERTFAGQQQVFYASD-----  1065
             LGLP G RSD +TY  + VP  G++ E L   ++L++    R +  QQ+ FY+ +     
Sbjct  1010  LGLPDGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTDGKNQTP  1069

Query  1066  ----TIPGLVAYSQQAEFDDQTLAALDELLPTNEREQQLIEAGYQRAPRLFSRPGETDIW  1121
                 T  +L+A+++ A + +  L+A+D  +  +E    L +AGYQ+ P LF+R GE  +W
Sbjct  1070  LKTPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRTGENKVW  1129

Query  1122  AAQRGFTDYGDASRFYRPISQRSSPLVGKTALEWDKNSCAITQMILADGSTTQAEYDYRF  1181
              A++G+TDYG  ++F RP++QR+S L GK +L WD + C ITQ   A G T  A+YD RF
Sbjct  1130  VARQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSANYDWRF  1189

Query  1182  ITPYHLTDINDNSRHIELDALGRVTSSRFWGTELDSQTGEVSTTGFPLIAEPPFTVPNSV  1241
             +TP +LTDINDN + I LDALGR  + RFWG E         +TG++   E PF+ PN +
Sbjct  1190  LTPTQLTDINDNVHLITLDALGRPVTQRFWGIE------SGVATGYSSSEEKPFSPPNDI  1243

Query  1242  DAAISMENTQVPVAQFSVYQPQSWMISLQLDDIETLSETNNVTLEYLFQNHILIDNYYLC  1301
             D+AI++    +PVAQ  VY P+SWM  +  + ++TL++ ++ TL    +++I+ ++  +C
Sbjct  1244  DTAINL-TGPLPVAQCLVYAPDSWMPLFSQETFNTLTQEEQETLR---DSRIITEDWRIC  1299

Query  1302  PLALRRWIRQSNPLITEYVGLTLKNPVRQPPHVLTVVVDNYFSAAEPQQHQQTLAFSDGF  1361
             +L+ RRW+ QS+ + T  V L L N++  PPH LT+  D Y   +E Q +QQ +AFSDGF
Sbjct  1300  ALTRRRWL-QSQKISTPLVKL-LTNSIGLPPHNLTLTTDRYDRDSEQQIRQQ-VAFSDGF  1356

Query  1362  GRVLQSAQRVEAGTAYFHTGEGGLEMDQQGHLTQDESDQRWAVSGRTEYDNKGLPIRRYQ  1421
             GR+LQ++ R EAG A  +  +G+L          +++  RWAV+GRTEYDNKG  IR YQ
Sbjct  1357  GRLLQASVRHEAGEAWQRNQDGSLVT------KVENTKTRWAVTGRTEYDNKGQTIRTYQ  1410

Query  1422  PYFLDDWRYIADDNARKEAWADTHIYDPLGREIKVITAKGYLRRAHYFPWFVISEDENDT  1481
             PYFL+DWRY++DD+ARKEA ADTHIYDP+GREI+VITAKG LR+++YFPWF +SEDENDT
Sbjct  1411  PYFLNDWRYVSDDSARKEAYADTHIYDPIGREIRVITAKGWLRQSQYFPWFTVSEDENDT  1470

Query  1482  ASE  1484
             A++
Sbjct  1471  AAD  1473

15) tcaC in NC_006155


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1178 bits (4466),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 746/1503 (50%), Positives = 1050/1503 (70%), Gaps = 52/1503 (3%)

Query  3     NSKQQVAVAPLSLPKGGGAITGMGDSLGPIGPSGMATLTLPLPISAGRGYAPSLTLSYSS  62
             ++ Q  +V+ LSLPKGGGAITGMG++L P GP GMA+L+LPLPISAGRGYAPSLTL+Y+S
Sbjct  2     QNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNS  61

Query  63    GSGNGPFGLGWQLGTMAIRRRTNAQVPRYDEYDEFLAPNGEVMVVAADPQGNIE-RTEQS  121
             G+GN+PFGLGW+ G MAIRRRT++ VP YDE D FL+P+GEV+VVA +  G+ + R+E S
Sbjct  62    GTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESS  121

Query  122   LNG----EQFSVIRYLPRIEGNFHRIEYWRPRTNNSQAPFWLVHSSDGQKHGLGYSASAR  177
             L+G      F+V  Y +R+E++F+R+EYW+P+T  + + FWL+ S+DGQ H LG ++ AR
Sbjct  122   LQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGA-TDFWLIYSPDGQVHLLGKNPQAR  180

Query  178   IADPLHPEHIAEWLLEESVSLSGEHICYQYQAEDEQDIDESEKQNHPAASAQRYLSTVVY  237
             I++PL+ ++ A+WLLE S+S  +E+I YQY+AEDE + +  E   HP+A+ QRYL TV Y
Sbjct  181   ISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCETDELAAHPSATVQRYLQTVHY  240

Query  238   GNREVAHELYCLT-QRPAPTSWLFSLIFDHGEYSNIAEQVPVIIKGKSWNFRQDAFSRFS  296
             GN   ++ +  L  + P  ++W+F L+FD GE  N   ++P++    +W  R+D FSR+ 
Sbjct  241   GNLTASDVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRKDRFSRYE  300

Query  297   CGFEVRTRRLCQQVLMYHNLSALKGNE-PDAQATLVSRLRLHYQHDAYATQLVGCQQLAH  355
              GFE+RTRRLC+Q+LM+H L +L G+   D +++LVSRL L+Y+++A  + LV+ ++++H
Sbjct  301   YGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVSVRRVGH  360

Query  356   EPDGTKRSLPPLEFDYQDFSTRDALGWQPLTDWAEFNY--QYQMVDLNGEGMPGMLYQDS  413
             E + T  +LPPLE+ YQ F   ++  WQ++   A+FN   + Q++DL+GEG+PG+LYQD 
Sbjct  361   EDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPGILYQDR  420

Query  414   GHWIYRPPVRQPGTA-DGITFGAAQQLPSLPAMRENAMLMDINGDGKLDWVISQPGLAGY  472
               W YR++ RQ+G   +++T G  Q LP  PA+++NA LMDINGDG+LDWVI+ PGL GY
Sbjct  421   NGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITGPGLRGY  480

Query  473   FSRDPDLSRDPDLSWTQFIPLSTLPAEYFHPQAQLVDLAGSGLSDLALIGPKSVRVYTNL  532
              S++PD S      WT+F PL +LP EY HP+AQL DL G+GLSDL LIGPKSVR+Y N 
Sbjct  481   HSQHPDGS------WTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSVRLYVNN  534

Query  533   GDSFAAATQVVQDDDITLPLPGAHFTELVAFSDVMGSGQQHLVRIRHNSVTCWPNLGHGR  592
              D+F+ + +VVQ +DITLPLPGA+   LVAFSDV+GSGQ HLV +    VTCWPNLGHGR
Sbjct  535   RDGFTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWPNLGHGR  594

Query  593   FGHPISLPGFNQHIEQFNPLAIYLADIDGSGTIDLIYATASQLLIYRNQSGNRFAEPVAI  652
             FG+PI LPGF+Q    FNP  + LAD+DGSG  DLIY  A +L I+ N+SGN FA P ++
Sbjct  595   FGQPIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGFAKPFTL  654

Query  653   ALPTGIRFDNSCQLSLADIQGLGVASIMLSVPHPTTQHWRYDFVASKPYLLCTTNNNMGA  712
             ++P G+RFD++CQL +AD+QGLGV S++LSVPH + +HWR D+  +KP LL  TNNNMGA
Sbjct  655   SFPDGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSETNNNMGA  714

Query  713   ESQLFYRSSAQFWLDEKAQAAKQGRSLACQLPFPIHLLAQTTQLDEITGNSLSQTARYFH  772
             +  L YRSS QFWLDEKA A   G++  C LPFP+H L QT   DEI+GN L  T RY H
Sbjct  715   NHTLHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVTTLRYAH  774

Query  773   GFYDGVQREFCGFGRVDTLDTDTSAQGSAAERTAPTKSSRWFHTGRADNETLWQSEYWQG  832
             G  DG +REF GFG V+  D++  AQG+A+ERT+P+ +  W+ TG +  +    + YW+G
Sbjct  775   GAWDGREREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPAVDNALSAGYWRG  834

Query  833   DDQDYPLLPTRLTKFINDTQGDDL-LSELDDNQTFWLHRALKGSLLRSELYGLDDSKLAT  891
             D Q ++ +  R+T      +G D+ L+  DD++ +WL+RALKG  LRSELYGLD+S    
Sbjct  835   DKQAFAGFTPRFTLW---KEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLDGSAQQQ  891

Query  892   QPYSVNSSRYQVRQIQSSADGISSPVALPMVLEQLSYHYERIAQDPQCSQQIVLHCNEFG  951
              PY+V  SR QVRQ+Q +A    SPV  + V+E  SYHYERI  DPQC+Q+I L  + FG
Sbjct  892   IPYTVTESRPQVRQLQDGA--TVSPVLWASVVESRSYHYERIISDPQCNQDITLSSDLFG  949

Query  952   HPLHSVTINYPRRDKARIPSYS-WLAKEHWDSNFDEQQQQLRITESQQSYHHEISDKFYV  1010
             +PL  V+++YPRR+K+   +Y+  L+     S++D+QQQ LR+T  Q S HH I++ + V
Sbjct  950   QPLKQVSVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLIGNELRV  1009

Query  1011  LGLPAGQRSDVLTYPDNFVPTAGIHWEELQQPEGLLGTKAERTFAGQQQVFYTSD-----  1065
             LGLP G RSD +TY  + VP  G++ E L   ++L++    R +  QQ+ FYT +     
Sbjct  1010  LGLPDGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTDGKNQTP  1069

Query  1066  ----TIPGLVAYSQQAEFDDQTLAALDELLPANERKQQLIKAGYQTAPRLFARPGETDIW  1121
                 T  +L+A+++ A + +  L+A+D  + ++E    L +AGYQ  P LF+R GE  +W
Sbjct  1070  LKTPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRTGENKVW  1129

Query  1122  VAQSGFTDYGDASRFYRPISQRSSLLVGKTALGWDKNSCAITQMILADGSTTQAEYDYRF  1181
             VA+ G+TDYG  ++F RP++QR+SLL GK +L WD + C ITQ   A G T  A+YD RF
Sbjct  1130  VARQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSANYDWRF  1189

Query  1182  ITPYHLTDINDNSRHIELDALGRITSSRFWGTELDPQTNKVIETGFPSIAEQPFTPPNSV  1241
             +TP +LTDINDN + I LDALGR  + RFWG E        + TG++S  E+PF+PPN +
Sbjct  1190  LTPTQLTDINDNVHLITLDALGRPVTQRFWGIE------SGVATGYSSSEEKPFSPPNDI  1243

Query  1242  DDAISLENTRIPVAQFSVYQPQSWMISLQRDEIEIWIRVNKITPEYLFQNHILIDNHYLC  1301
             D AI+L    +PVAQ  VY P+SWM  + ++ ++    + +   E L +++I+ ++  +C
Sbjct  1244  DTAINLTGP-LPVAQCLVYAPDSWMPLFSQETFNT---LTQEEQETLRDSRIITEDWRIC  1299

Query  1302  PLALHRWVRQNNLLITEDVGLALEMPMRQPPHILTVVVDNYFSAAEPQQHQQTLAFSDGF  1361
             +L+ +RW++ ++  I+  +   L  ++  PPH LT+  D Y   +E Q +QQ +AFSDGF
Sbjct  1300  ALTRRRWLQSQK--ISTPLVKLLTNSIGLPPHNLTLTTDRYDRDSEQQIRQQ-VAFSDGF  1356

Query  1362  GRVLQSAQRVEAGTAYFHTGEGGLEMDQQGHLTQDESDKRWAVSGRTEYDNKGLPIRRYQ  1421
             GR+LQ++ R EAG A  +  +G+L          +++  RWAV+GRTEYDNKG  IR YQ
Sbjct  1357  GRLLQASVRHEAGEAWQRNQDGSLVT------KVENTKTRWAVTGRTEYDNKGQTIRTYQ  1410

Query  1422  PYFLDGWRYIADDSARKEAWANTHIYDPLGREIKVITAKGYLRRTHYFPWFVISEDENDT  1481
             PYFL++WRY++DDSARKEA A+THIYDP+GREI+VITAKG LR+++YFPWF +SEDENDT
Sbjct  1411  PYFLNDWRYVSDDSARKEAYADTHIYDPIGREIRVITAKGWLRQSQYFPWFTVSEDENDT  1470

Query  1482  ASE  1484
             A++
Sbjct  1471  AAD  1473

16) A1122_07815 in NC_017168


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1140 bits (4322),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 727/1511 (49%), Positives = 1043/1511 (70%), Gaps = 61/1511 (4%)

Query  3     NSKQQVAVAPLSLPKGGGAITGMGDSLGPIGPSGMATLTLPLPISAGRGYAPSLTLSYSS  62
             ++ Q  +V+ LSLPKGGGAITGMG++L P GP GMA+L+LPLPISAGRGYAPSLTL+Y+S
Sbjct  2     QNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNS  61

Query  63    GSGNGPFGLGWQLGTMAIRRRTNAQVPRYDEYDEFLAPNGEVMVVAADPQGSIE-RTEQS  121
             G+GN+PFGLGW+ G MAIRRRT++ VP YDE D FL+P+GEV+VVA +  G  + R+E S
Sbjct  62    GTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESS  121

Query  122   LNG----EQFSVIRYLPRIEGNFHRIEYWRPRTNNSQAPFWLVHSSDGQKHCLGYSAAAR  177
             L+G      F+V  Y +R+E++F+R+EYW+P+T  + + FWL+ S+DGQ H LG ++ AR
Sbjct  122   LQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGA-TDFWLIYSPDGQVHLLGKNPQAR  180

Query  178   IADPLHPEHIAEWLLEESVSLSGEHIGYQYQAEDEQGIDEPSIYKAEKQNHPAASAQRYL  237
             I++PL+ ++ A+WLLE S+S  +E+I YQY+AEDE G +       E   HP+A+ QRYL
Sbjct  181   ISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCE-----TDELAAHPSATVQRYL  235

Query  238   KRVVYGNRQAAYELYCL--TQQPAPTSWLFSLIFDHGEYSNIAEQVPVIIKGKSWNFRQD  295
             + V YGN  A+ +++     ++P  ++W+F L+FD GE  N   ++P++    +W  R+D
Sbjct  236   QTVHYGNLTAS-DVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRKD  294

Query  296   AFSHFNYGFEVRTRRLCQQVLMYHNLSALKGDE-PDAQATLVSRLRLHYQHDAYATQLVG  354
              FS+++YGFE+RTRRLC+Q+LM+H L +L G+   D +++LVSRL L+Y+++A  + LV+
Sbjct  295   RFSRYEYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVS  354

Query  355   CQQLAHEPDGTKRSLPPLEFDYQDFSTRDALGWQPLTDWAEFNY--QYQMVDLNGEGMPG  412
              ++++HE + T  +LPPLE+ YQ F   ++  WQ++   A+FN   + Q++DL+GEG+PG
Sbjct  355   VRRVGHEDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPG  414

Query  413   MLYQDSGHWIYRPPVRQPGTA-DGITFGAAQRLPSLPAMRENAMLMDINGDGKLDWVISQ  471
             +LYQD   W YR++ RQ+G   +++T G  Q LP  PA+++NA LMDINGDG+LDWVI+ 
Sbjct  415   ILYQDRNGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITG  474

Query  472   PGLAGYFSRDPDLSRDPDLSWTQFIPLSTLPAEYFHPQAQLVDLAGSGLSDLALVGPKSV  531
             PGL GY S++PD S      WT+F PL +LP EY HP+AQL DL G+GLSDL L+GPKSV
Sbjct  475   PGLRGYHSQHPDGS------WTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSV  528

Query  532   RVYTNLCDSFAAATQVAQDDDITLPLPGVHFTELVAFSDVMGSGQQHLVRIRHNSVTCWP  591
             R+Y N  D+F+ + +V Q +DITLPLPG +   LVAFSDV+GSGQ HLV +    VTCWP
Sbjct  529   RLYVNNRDGFTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWP  588

Query  592   NLGHGRFGHPLSLPGFNQPVEQFNPLAIYLADIDGSGTIDLIYATTSQLLIYRNQSGNRF  651
             NLGHGRFG+P+ LPGF+Q+   FNP  + LAD+DGSG  DLIY  + +L I+ N+SGN F
Sbjct  589   NLGHGRFGQPIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGF  648

Query  652   AEPLAIALPTGIRFDNSCQLSLADIQGLGVASIMLSVPHPTTQHWRYDFVASKPYLLCTT  711
             A P+++++P G+RFD++CQL +AD+QGLGV S++LSVPH + +HWR D+  +KP LL  T
Sbjct  649   AKPFTLSFPDGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSET  708

Query  712   NNNMGAESQLLYRSSVQFWLDEKAQAAKQGRSLACQLPFPIHLLAQTTQFDEITGNSLSQ  771
             NNNMGA+  L YRSSVQFWLDEKA A   G++  C LPFP+H L QT   DEI+GN L  
Sbjct  709   NNNMGANHTLHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVT  768

Query  772   TARYFHGFYDGVQREFSGFGRVDTLDTDTSAQGSAAERTAPTKSSRWFHTGRAGNETLWQ  831
             T RY HG  DG +REF GFG V+  D++  AQG+A+ERT+P+ +  W+ TG ++ +    
Sbjct  769   TLRYAHGAWDGREREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPAVDNALS  828

Query  832   SEYWQGDDQAYSLLPTRLTKFINNTQGDEL-LSELDDNQTFWLHRALKGSLLRSELYGLD  890
             + YW+GD QA++ +  R   F    +G ++ L+  DD++ +WL+RALKG  LRSELYGLD
Sbjct  829   AGYWRGDKQAFAGFTPR---FTLWKEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLD  885

Query  891   DSELATQPYSVNSSRYQVRQIQSSADGISSPVALPMVLEQLSYHYERIAQDPQCSQQIVL  950
             +S     PY+V  SR QVRQ+Q +A    SPV  + V+E  SYHYERI  DPQC+Q+I L
Sbjct  886   GSAQQQIPYTVTESRPQVRQLQDGA--TVSPVLWASVVESRSYHYERIISDPQCNQDITL  943

Query  951   RCNEYGHPLHSVTINYPRRDKARISPYS-WLAKEHWDSHFDEQQQQLRITESQQSYHHEI  1009
               + +G+PL  V+++YPRR+K+  +PY+  L+     S +D+QQQ LR+T  Q S HH I
Sbjct  944   SSDLFGQPLKQVSVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLI  1003

Query  1010  SDKFYVLGLPAGQRSDVLTYPDNFVPTAGIHWEELQQPEGLLGTKAERTFTAQQQVFYTS  1069
             ++ + VLGLP G RSD +TY  + VP  G++ E L   ++L++    R +  QQ+ FYT 
Sbjct  1004  GNELRVLGLPDGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTD  1063

Query  1070  D---------TIPGLVAYSQQAEFDDQTLVALDELLPANERKQQLIKAGYQIAPRLFART  1120
             +         T  +L+A+++ A + +  L A+D  + ++E    L +AGYQ  P LF+RT
Sbjct  1064  GKNQTPLKTPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRT  1123

Query  1121  GETDIWVAQSGFTDYGDASRFYRPISQRSTQLVGKTILEWDATCCAVSDIILADYSITHA  1180
             GE  +WVA+ G+TDYG  ++F RP++QR++ L GK  L WD+  C +++   A      A
Sbjct  1124  GENKVWVARQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSA  1183

Query  1181  EYDYRFITPYLLIDINDNQHYIELDALGRVTSSRFAGTEIDPQTNKVIETGFPSIAEQPF  1240
             +YD RF+TP  L DINDN H I LDALGR  + RF G E +      + TG++S  E+PF
Sbjct  1184  NYDWRFLTPTQLTDINDNVHLITLDALGRPVTQRFWGIESG------VATGYSSSEEKPF  1237

Query  1241  SAPNSVDKALSLENTRIPVAQFSVYQPQSWMISLQLDDIEIWIRANNITPEYLFQNHILI  1300
             S+PN +D A++L    +PVAQ  VY P+SWM  +  + ++   + ++   E L +++I+ 
Sbjct  1238  SPPNDIDTAINLTGP-LPVAQCLVYAPDSWMPLFSQETFNTLTQEEQ---ETLRDSRIIT  1293

Query  1301  DNYYLCPLALRRWGRQNNLLITEGVGLTLKNPMRQPPHILTVVVDNYFSASEPQQHQQTL  1360
             ++  +C+L+ RRW + ++  I+  +   L N++  PPH LT+  D Y   SE Q +QQ +
Sbjct  1294  EDWRICALTRRRWLQSQK--ISTPLVKLLTNSIGLPPHNLTLTTDRYDRDSEQQIRQQ-V  1350

Query  1361  AFSDGFGRVLLSARRVETGPSYSFDPENGLLVDDKGNLVQLEVDQRWAVSGRTEYDNKGL  1420
             AFSDGFGR+L ++ R E+G +   + + +L+          +   RWAV+GRTEYDNKG 
Sbjct  1351  AFSDGFGRLLQASVRHEAGEAWQRNQDGSLVTKVE------NTKTRWAVTGRTEYDNKGQ  1404

Query  1421  PRRRYQPYFFDNWIWLYIANNRTLKEAYADTHIYDPLGREIKVITAKGYLRRTHYFPWFV  1480
               R YQPYF+++W   Y++++ + KEAYADTHIYDP+GREI+VITAKG LR+++YFPWF 
Sbjct  1405  TIRTYQPYFLNDWR--YVSDDSARKEAYADTHIYDPIGREIRVITAKGWLRQSQYFPWFT  1462

Query  1481  ISEDENDTASE  1491
             +SEDENDTA++
Sbjct  1463  VSEDENDTAAD  1473

17) YpAngola_A1182 in NC_010159


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1140 bits (4322),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 727/1511 (49%), Positives = 1043/1511 (70%), Gaps = 61/1511 (4%)

Query  3     NSKQQVAVAPLSLPKGGGAITGMGDSLGPIGPSGMATLTLPLPISAGRGYAPSLTLSYSS  62
             ++ Q  +V+ LSLPKGGGAITGMG++L P GP GMA+L+LPLPISAGRGYAPSLTL+Y+S
Sbjct  2     QNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNS  61

Query  63    GSGNGPFGLGWQLGTMAIRRRTNAQVPRYDEYDEFLAPNGEVMVVAADPQGSIE-RTEQS  121
             G+GN+PFGLGW+ G MAIRRRT++ VP YDE D FL+P+GEV+VVA +  G  + R+E S
Sbjct  62    GTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESS  121

Query  122   LNG----EQFSVIRYLPRIEGNFHRIEYWRPRTNNSQAPFWLVHSSDGQKHCLGYSAAAR  177
             L+G      F+V  Y +R+E++F+R+EYW+P+T  + + FWL+ S+DGQ H LG ++ AR
Sbjct  122   LQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGA-TDFWLIYSPDGQVHLLGKNPQAR  180

Query  178   IADPLHPEHIAEWLLEESVSLSGEHIGYQYQAEDEQGIDEPSIYKAEKQNHPAASAQRYL  237
             I++PL+ ++ A+WLLE S+S  +E+I YQY+AEDE G +       E   HP+A+ QRYL
Sbjct  181   ISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCE-----TDELAAHPSATVQRYL  235

Query  238   KRVVYGNRQAAYELYCL--TQQPAPTSWLFSLIFDHGEYSNIAEQVPVIIKGKSWNFRQD  295
             + V YGN  A+ +++     ++P  ++W+F L+FD GE  N   ++P++    +W  R+D
Sbjct  236   QTVHYGNLTAS-DVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRKD  294

Query  296   AFSHFNYGFEVRTRRLCQQVLMYHNLSALKGDE-PDAQATLVSRLRLHYQHDAYATQLVG  354
              FS+++YGFE+RTRRLC+Q+LM+H L +L G+   D +++LVSRL L+Y+++A  + LV+
Sbjct  295   RFSRYEYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVS  354

Query  355   CQQLAHEPDGTKRSLPPLEFDYQDFSTRDALGWQPLTDWAEFNY--QYQMVDLNGEGMPG  412
              ++++HE + T  +LPPLE+ YQ F   ++  WQ++   A+FN   + Q++DL+GEG+PG
Sbjct  355   VRRVGHEDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPG  414

Query  413   MLYQDSGHWIYRPPVRQPGTA-DGITFGAAQRLPSLPAMRENAMLMDINGDGKLDWVISQ  471
             +LYQD   W YR++ RQ+G   +++T G  Q LP  PA+++NA LMDINGDG+LDWVI+ 
Sbjct  415   ILYQDRNGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITG  474

Query  472   PGLAGYFSRDPDLSRDPDLSWTQFIPLSTLPAEYFHPQAQLVDLAGSGLSDLALVGPKSV  531
             PGL GY S++PD S      WT+F PL +LP EY HP+AQL DL G+GLSDL L+GPKSV
Sbjct  475   PGLRGYHSQHPDGS------WTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSV  528

Query  532   RVYTNLCDSFAAATQVAQDDDITLPLPGVHFTELVAFSDVMGSGQQHLVRIRHNSVTCWP  591
             R+Y N  D+F+ + +V Q +DITLPLPG +   LVAFSDV+GSGQ HLV +    VTCWP
Sbjct  529   RLYVNNRDGFTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWP  588

Query  592   NLGHGRFGHPLSLPGFNQPVEQFNPLAIYLADIDGSGTIDLIYATTSQLLIYRNQSGNRF  651
             NLGHGRFG+P+ LPGF+Q+   FNP  + LAD+DGSG  DLIY  + +L I+ N+SGN F
Sbjct  589   NLGHGRFGQPIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGF  648

Query  652   AEPLAIALPTGIRFDNSCQLSLADIQGLGVASIMLSVPHPTTQHWRYDFVASKPYLLCTT  711
             A P+++++P G+RFD++CQL +AD+QGLGV S++LSVPH + +HWR D+  +KP LL  T
Sbjct  649   AKPFTLSFPDGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSET  708

Query  712   NNNMGAESQLLYRSSVQFWLDEKAQAAKQGRSLACQLPFPIHLLAQTTQFDEITGNSLSQ  771
             NNNMGA+  L YRSSVQFWLDEKA A   G++  C LPFP+H L QT   DEI+GN L  
Sbjct  709   NNNMGANHTLHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVT  768

Query  772   TARYFHGFYDGVQREFSGFGRVDTLDTDTSAQGSAAERTAPTKSSRWFHTGRAGNETLWQ  831
             T RY HG  DG +REF GFG V+  D++  AQG+A+ERT+P+ +  W+ TG ++ +    
Sbjct  769   TLRYAHGAWDGREREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPAVDNALS  828

Query  832   SEYWQGDDQAYSLLPTRLTKFINNTQGDEL-LSELDDNQTFWLHRALKGSLLRSELYGLD  890
             + YW+GD QA++ +  R   F    +G ++ L+  DD++ +WL+RALKG  LRSELYGLD
Sbjct  829   AGYWRGDKQAFAGFTPR---FTLWKEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLD  885

Query  891   DSELATQPYSVNSSRYQVRQIQSSADGISSPVALPMVLEQLSYHYERIAQDPQCSQQIVL  950
             +S     PY+V  SR QVRQ+Q +A    SPV  + V+E  SYHYERI  DPQC+Q+I L
Sbjct  886   GSAQQQIPYTVTESRPQVRQLQDGA--TVSPVLWASVVESRSYHYERIISDPQCNQDITL  943

Query  951   RCNEYGHPLHSVTINYPRRDKARISPYS-WLAKEHWDSHFDEQQQQLRITESQQSYHHEI  1009
               + +G+PL  V+++YPRR+K+  +PY+  L+     S +D+QQQ LR+T  Q S HH I
Sbjct  944   SSDLFGQPLKQVSVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLI  1003

Query  1010  SDKFYVLGLPAGQRSDVLTYPDNFVPTAGIHWEELQQPEGLLGTKAERTFTAQQQVFYTS  1069
             ++ + VLGLP G RSD +TY  + VP  G++ E L   ++L++    R +  QQ+ FYT 
Sbjct  1004  GNELRVLGLPDGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTD  1063

Query  1070  D---------TIPGLVAYSQQAEFDDQTLVALDELLPANERKQQLIKAGYQIAPRLFART  1120
             +         T  +L+A+++ A + +  L A+D  + ++E    L +AGYQ  P LF+RT
Sbjct  1064  GKNQTPLKTPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRT  1123

Query  1121  GETDIWVAQSGFTDYGDASRFYRPISQRSTQLVGKTILEWDATCCAVSDIILADYSITHA  1180
             GE  +WVA+ G+TDYG  ++F RP++QR++ L GK  L WD+  C +++   A      A
Sbjct  1124  GENKVWVARQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSA  1183

Query  1181  EYDYRFITPYLLIDINDNQHYIELDALGRVTSSRFAGTEIDPQTNKVIETGFPSIAEQPF  1240
             +YD RF+TP  L DINDN H I LDALGR  + RF G E +      + TG++S  E+PF
Sbjct  1184  NYDWRFLTPTQLTDINDNVHLITLDALGRPVTQRFWGIESG------VATGYSSSEEKPF  1237

Query  1241  SAPNSVDKALSLENTRIPVAQFSVYQPQSWMISLQLDDIEIWIRANNITPEYLFQNHILI  1300
             S+PN +D A++L    +PVAQ  VY P+SWM  +  + ++   + ++   E L +++I+ 
Sbjct  1238  SPPNDIDTAINLTGP-LPVAQCLVYAPDSWMPLFSQETFNTLTQEEQ---ETLRDSRIIT  1293

Query  1301  DNYYLCPLALRRWGRQNNLLITEGVGLTLKNPMRQPPHILTVVVDNYFSASEPQQHQQTL  1360
             ++  +C+L+ RRW + ++  I+  +   L N++  PPH LT+  D Y   SE Q +QQ +
Sbjct  1294  EDWRICALTRRRWLQSQK--ISTPLVKLLTNSIGLPPHNLTLTTDRYDRDSEQQIRQQ-V  1350

Query  1361  AFSDGFGRVLLSARRVETGPSYSFDPENGLLVDDKGNLVQLEVDQRWAVSGRTEYDNKGL  1420
             AFSDGFGR+L ++ R E+G +   + + +L+          +   RWAV+GRTEYDNKG 
Sbjct  1351  AFSDGFGRLLQASVRHEAGEAWQRNQDGSLVTKVE------NTKTRWAVTGRTEYDNKGQ  1404

Query  1421  PRRRYQPYFFDNWIWLYIANNRTLKEAYADTHIYDPLGREIKVITAKGYLRRTHYFPWFV  1480
               R YQPYF+++W   Y++++ + KEAYADTHIYDP+GREI+VITAKG LR+++YFPWF 
Sbjct  1405  TIRTYQPYFLNDWR--YVSDDSARKEAYADTHIYDPIGREIRVITAKGWLRQSQYFPWFT  1462

Query  1481  ISEDENDTASE  1491
             +SEDENDTA++
Sbjct  1463  VSEDENDTAAD  1473

18) YPA_3691 in NC_008150


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1140 bits (4322),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 727/1511 (49%), Positives = 1043/1511 (70%), Gaps = 61/1511 (4%)

Query  3     NSKQQVAVAPLSLPKGGGAITGMGDSLGPIGPSGMATLTLPLPISAGRGYAPSLTLSYSS  62
             ++ Q  +V+ LSLPKGGGAITGMG++L P GP GMA+L+LPLPISAGRGYAPSLTL+Y+S
Sbjct  2     QNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNS  61

Query  63    GSGNGPFGLGWQLGTMAIRRRTNAQVPRYDEYDEFLAPNGEVMVVAADPQGSIE-RTEQS  121
             G+GN+PFGLGW+ G MAIRRRT++ VP YDE D FL+P+GEV+VVA +  G  + R+E S
Sbjct  62    GTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESS  121

Query  122   LNG----EQFSVIRYLPRIEGNFHRIEYWRPRTNNSQAPFWLVHSSDGQKHCLGYSAAAR  177
             L+G      F+V  Y +R+E++F+R+EYW+P+T  + + FWL+ S+DGQ H LG ++ AR
Sbjct  122   LQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGA-TDFWLIYSPDGQVHLLGKNPQAR  180

Query  178   IADPLHPEHIAEWLLEESVSLSGEHIGYQYQAEDEQGIDEPSIYKAEKQNHPAASAQRYL  237
             I++PL+ ++ A+WLLE S+S  +E+I YQY+AEDE G +       E   HP+A+ QRYL
Sbjct  181   ISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCE-----TDELAAHPSATVQRYL  235

Query  238   KRVVYGNRQAAYELYCL--TQQPAPTSWLFSLIFDHGEYSNIAEQVPVIIKGKSWNFRQD  295
             + V YGN  A+ +++     ++P  ++W+F L+FD GE  N   ++P++    +W  R+D
Sbjct  236   QTVHYGNLTAS-DVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRKD  294

Query  296   AFSHFNYGFEVRTRRLCQQVLMYHNLSALKGDE-PDAQATLVSRLRLHYQHDAYATQLVG  354
              FS+++YGFE+RTRRLC+Q+LM+H L +L G+   D +++LVSRL L+Y+++A  + LV+
Sbjct  295   RFSRYEYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVS  354

Query  355   CQQLAHEPDGTKRSLPPLEFDYQDFSTRDALGWQPLTDWAEFNY--QYQMVDLNGEGMPG  412
              ++++HE + T  +LPPLE+ YQ F   ++  WQ++   A+FN   + Q++DL+GEG+PG
Sbjct  355   VRRVGHEDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPG  414

Query  413   MLYQDSGHWIYRPPVRQPGTA-DGITFGAAQRLPSLPAMRENAMLMDINGDGKLDWVISQ  471
             +LYQD   W YR++ RQ+G   +++T G  Q LP  PA+++NA LMDINGDG+LDWVI+ 
Sbjct  415   ILYQDRNGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITG  474

Query  472   PGLAGYFSRDPDLSRDPDLSWTQFIPLSTLPAEYFHPQAQLVDLAGSGLSDLALVGPKSV  531
             PGL GY S++PD S      WT+F PL +LP EY HP+AQL DL G+GLSDL L+GPKSV
Sbjct  475   PGLRGYHSQHPDGS------WTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSV  528

Query  532   RVYTNLCDSFAAATQVAQDDDITLPLPGVHFTELVAFSDVMGSGQQHLVRIRHNSVTCWP  591
             R+Y N  D+F+ + +V Q +DITLPLPG +   LVAFSDV+GSGQ HLV +    VTCWP
Sbjct  529   RLYVNNRDGFTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWP  588

Query  592   NLGHGRFGHPLSLPGFNQPVEQFNPLAIYLADIDGSGTIDLIYATTSQLLIYRNQSGNRF  651
             NLGHGRFG+P+ LPGF+Q+   FNP  + LAD+DGSG  DLIY  + +L I+ N+SGN F
Sbjct  589   NLGHGRFGQPIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGF  648

Query  652   AEPLAIALPTGIRFDNSCQLSLADIQGLGVASIMLSVPHPTTQHWRYDFVASKPYLLCTT  711
             A P+++++P G+RFD++CQL +AD+QGLGV S++LSVPH + +HWR D+  +KP LL  T
Sbjct  649   AKPFTLSFPDGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSET  708

Query  712   NNNMGAESQLLYRSSVQFWLDEKAQAAKQGRSLACQLPFPIHLLAQTTQFDEITGNSLSQ  771
             NNNMGA+  L YRSSVQFWLDEKA A   G++  C LPFP+H L QT   DEI+GN L  
Sbjct  709   NNNMGANHTLHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVT  768

Query  772   TARYFHGFYDGVQREFSGFGRVDTLDTDTSAQGSAAERTAPTKSSRWFHTGRAGNETLWQ  831
             T RY HG  DG +REF GFG V+  D++  AQG+A+ERT+P+ +  W+ TG ++ +    
Sbjct  769   TLRYAHGAWDGREREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPAVDNALS  828

Query  832   SEYWQGDDQAYSLLPTRLTKFINNTQGDEL-LSELDDNQTFWLHRALKGSLLRSELYGLD  890
             + YW+GD QA++ +  R   F    +G ++ L+  DD++ +WL+RALKG  LRSELYGLD
Sbjct  829   AGYWRGDKQAFAGFTPR---FTLWKEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLD  885

Query  891   DSELATQPYSVNSSRYQVRQIQSSADGISSPVALPMVLEQLSYHYERIAQDPQCSQQIVL  950
             +S     PY+V  SR QVRQ+Q +A    SPV  + V+E  SYHYERI  DPQC+Q+I L
Sbjct  886   GSAQQQIPYTVTESRPQVRQLQDGA--TVSPVLWASVVESRSYHYERIISDPQCNQDITL  943

Query  951   RCNEYGHPLHSVTINYPRRDKARISPYS-WLAKEHWDSHFDEQQQQLRITESQQSYHHEI  1009
               + +G+PL  V+++YPRR+K+  +PY+  L+     S +D+QQQ LR+T  Q S HH I
Sbjct  944   SSDLFGQPLKQVSVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLI  1003

Query  1010  SDKFYVLGLPAGQRSDVLTYPDNFVPTAGIHWEELQQPEGLLGTKAERTFTAQQQVFYTS  1069
             ++ + VLGLP G RSD +TY  + VP  G++ E L   ++L++    R +  QQ+ FYT 
Sbjct  1004  GNELRVLGLPDGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTD  1063

Query  1070  D---------TIPGLVAYSQQAEFDDQTLVALDELLPANERKQQLIKAGYQIAPRLFART  1120
             +         T  +L+A+++ A + +  L A+D  + ++E    L +AGYQ  P LF+RT
Sbjct  1064  GKNQTPLKTPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRT  1123

Query  1121  GETDIWVAQSGFTDYGDASRFYRPISQRSTQLVGKTILEWDATCCAVSDIILADYSITHA  1180
             GE  +WVA+ G+TDYG  ++F RP++QR++ L GK  L WD+  C +++   A      A
Sbjct  1124  GENKVWVARQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSA  1183

Query  1181  EYDYRFITPYLLIDINDNQHYIELDALGRVTSSRFAGTEIDPQTNKVIETGFPSIAEQPF  1240
             +YD RF+TP  L DINDN H I LDALGR  + RF G E +      + TG++S  E+PF
Sbjct  1184  NYDWRFLTPTQLTDINDNVHLITLDALGRPVTQRFWGIESG------VATGYSSSEEKPF  1237

Query  1241  SAPNSVDKALSLENTRIPVAQFSVYQPQSWMISLQLDDIEIWIRANNITPEYLFQNHILI  1300
             S+PN +D A++L    +PVAQ  VY P+SWM  +  + ++   + ++   E L +++I+ 
Sbjct  1238  SPPNDIDTAINLTGP-LPVAQCLVYAPDSWMPLFSQETFNTLTQEEQ---ETLRDSRIIT  1293

Query  1301  DNYYLCPLALRRWGRQNNLLITEGVGLTLKNPMRQPPHILTVVVDNYFSASEPQQHQQTL  1360
             ++  +C+L+ RRW + ++  I+  +   L N++  PPH LT+  D Y   SE Q +QQ +
Sbjct  1294  EDWRICALTRRRWLQSQK--ISTPLVKLLTNSIGLPPHNLTLTTDRYDRDSEQQIRQQ-V  1350

Query  1361  AFSDGFGRVLLSARRVETGPSYSFDPENGLLVDDKGNLVQLEVDQRWAVSGRTEYDNKGL  1420
             AFSDGFGR+L ++ R E+G +   + + +L+          +   RWAV+GRTEYDNKG 
Sbjct  1351  AFSDGFGRLLQASVRHEAGEAWQRNQDGSLVTKVE------NTKTRWAVTGRTEYDNKGQ  1404

Query  1421  PRRRYQPYFFDNWIWLYIANNRTLKEAYADTHIYDPLGREIKVITAKGYLRRTHYFPWFV  1480
               R YQPYF+++W   Y++++ + KEAYADTHIYDP+GREI+VITAKG LR+++YFPWF 
Sbjct  1405  TIRTYQPYFLNDWR--YVSDDSARKEAYADTHIYDPIGREIRVITAKGWLRQSQYFPWFT  1462

Query  1481  ISEDENDTASE  1491
             +SEDENDTA++
Sbjct  1463  VSEDENDTAAD  1473

19) tcaC in NC_017265


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1140 bits (4322),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 727/1511 (49%), Positives = 1043/1511 (70%), Gaps = 61/1511 (4%)

Query  3     NSKQQVAVAPLSLPKGGGAITGMGDSLGPIGPSGMATLTLPLPISAGRGYAPSLTLSYSS  62
             ++ Q  +V+ LSLPKGGGAITGMG++L P GP GMA+L+LPLPISAGRGYAPSLTL+Y+S
Sbjct  2     QNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNS  61

Query  63    GSGNGPFGLGWQLGTMAIRRRTNAQVPRYDEYDEFLAPNGEVMVVAADPQGSIE-RTEQS  121
             G+GN+PFGLGW+ G MAIRRRT++ VP YDE D FL+P+GEV+VVA +  G  + R+E S
Sbjct  62    GTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESS  121

Query  122   LNG----EQFSVIRYLPRIEGNFHRIEYWRPRTNNSQAPFWLVHSSDGQKHCLGYSAAAR  177
             L+G      F+V  Y +R+E++F+R+EYW+P+T  + + FWL+ S+DGQ H LG ++ AR
Sbjct  122   LQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGA-TDFWLIYSPDGQVHLLGKNPQAR  180

Query  178   IADPLHPEHIAEWLLEESVSLSGEHIGYQYQAEDEQGIDEPSIYKAEKQNHPAASAQRYL  237
             I++PL+ ++ A+WLLE S+S  +E+I YQY+AEDE G +       E   HP+A+ QRYL
Sbjct  181   ISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCE-----TDELAAHPSATVQRYL  235

Query  238   KRVVYGNRQAAYELYCL--TQQPAPTSWLFSLIFDHGEYSNIAEQVPVIIKGKSWNFRQD  295
             + V YGN  A+ +++     ++P  ++W+F L+FD GE  N   ++P++    +W  R+D
Sbjct  236   QTVHYGNLTAS-DVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRKD  294

Query  296   AFSHFNYGFEVRTRRLCQQVLMYHNLSALKGDE-PDAQATLVSRLRLHYQHDAYATQLVG  354
              FS+++YGFE+RTRRLC+Q+LM+H L +L G+   D +++LVSRL L+Y+++A  + LV+
Sbjct  295   RFSRYEYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVS  354

Query  355   CQQLAHEPDGTKRSLPPLEFDYQDFSTRDALGWQPLTDWAEFNY--QYQMVDLNGEGMPG  412
              ++++HE + T  +LPPLE+ YQ F   ++  WQ++   A+FN   + Q++DL+GEG+PG
Sbjct  355   VRRVGHEDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPG  414

Query  413   MLYQDSGHWIYRPPVRQPGTA-DGITFGAAQRLPSLPAMRENAMLMDINGDGKLDWVISQ  471
             +LYQD   W YR++ RQ+G   +++T G  Q LP  PA+++NA LMDINGDG+LDWVI+ 
Sbjct  415   ILYQDRNGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITG  474

Query  472   PGLAGYFSRDPDLSRDPDLSWTQFIPLSTLPAEYFHPQAQLVDLAGSGLSDLALVGPKSV  531
             PGL GY S++PD S      WT+F PL +LP EY HP+AQL DL G+GLSDL L+GPKSV
Sbjct  475   PGLRGYHSQHPDGS------WTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSV  528

Query  532   RVYTNLCDSFAAATQVAQDDDITLPLPGVHFTELVAFSDVMGSGQQHLVRIRHNSVTCWP  591
             R+Y N  D+F+ + +V Q +DITLPLPG +   LVAFSDV+GSGQ HLV +    VTCWP
Sbjct  529   RLYVNNRDGFTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWP  588

Query  592   NLGHGRFGHPLSLPGFNQPVEQFNPLAIYLADIDGSGTIDLIYATTSQLLIYRNQSGNRF  651
             NLGHGRFG+P+ LPGF+Q+   FNP  + LAD+DGSG  DLIY  + +L I+ N+SGN F
Sbjct  589   NLGHGRFGQPIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGF  648

Query  652   AEPLAIALPTGIRFDNSCQLSLADIQGLGVASIMLSVPHPTTQHWRYDFVASKPYLLCTT  711
             A P+++++P G+RFD++CQL +AD+QGLGV S++LSVPH + +HWR D+  +KP LL  T
Sbjct  649   AKPFTLSFPDGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSET  708

Query  712   NNNMGAESQLLYRSSVQFWLDEKAQAAKQGRSLACQLPFPIHLLAQTTQFDEITGNSLSQ  771
             NNNMGA+  L YRSSVQFWLDEKA A   G++  C LPFP+H L QT   DEI+GN L  
Sbjct  709   NNNMGANHTLHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVT  768

Query  772   TARYFHGFYDGVQREFSGFGRVDTLDTDTSAQGSAAERTAPTKSSRWFHTGRAGNETLWQ  831
             T RY HG  DG +REF GFG V+  D++  AQG+A+ERT+P+ +  W+ TG ++ +    
Sbjct  769   TLRYAHGAWDGREREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPAVDNALS  828

Query  832   SEYWQGDDQAYSLLPTRLTKFINNTQGDEL-LSELDDNQTFWLHRALKGSLLRSELYGLD  890
             + YW+GD QA++ +  R   F    +G ++ L+  DD++ +WL+RALKG  LRSELYGLD
Sbjct  829   AGYWRGDKQAFAGFTPR---FTLWKEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLD  885

Query  891   DSELATQPYSVNSSRYQVRQIQSSADGISSPVALPMVLEQLSYHYERIAQDPQCSQQIVL  950
             +S     PY+V  SR QVRQ+Q +A    SPV  + V+E  SYHYERI  DPQC+Q+I L
Sbjct  886   GSAQQQIPYTVTESRPQVRQLQDGA--TVSPVLWASVVESRSYHYERIISDPQCNQDITL  943

Query  951   RCNEYGHPLHSVTINYPRRDKARISPYS-WLAKEHWDSHFDEQQQQLRITESQQSYHHEI  1009
               + +G+PL  V+++YPRR+K+  +PY+  L+     S +D+QQQ LR+T  Q S HH I
Sbjct  944   SSDLFGQPLKQVSVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLI  1003

Query  1010  SDKFYVLGLPAGQRSDVLTYPDNFVPTAGIHWEELQQPEGLLGTKAERTFTAQQQVFYTS  1069
             ++ + VLGLP G RSD +TY  + VP  G++ E L   ++L++    R +  QQ+ FYT 
Sbjct  1004  GNELRVLGLPDGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTD  1063

Query  1070  D---------TIPGLVAYSQQAEFDDQTLVALDELLPANERKQQLIKAGYQIAPRLFART  1120
             +         T  +L+A+++ A + +  L A+D  + ++E    L +AGYQ  P LF+RT
Sbjct  1064  GKNQTPLKTPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRT  1123

Query  1121  GETDIWVAQSGFTDYGDASRFYRPISQRSTQLVGKTILEWDATCCAVSDIILADYSITHA  1180
             GE  +WVA+ G+TDYG  ++F RP++QR++ L GK  L WD+  C +++   A      A
Sbjct  1124  GENKVWVARQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSA  1183

Query  1181  EYDYRFITPYLLIDINDNQHYIELDALGRVTSSRFAGTEIDPQTNKVIETGFPSIAEQPF  1240
             +YD RF+TP  L DINDN H I LDALGR  + RF G E +      + TG++S  E+PF
Sbjct  1184  NYDWRFLTPTQLTDINDNVHLITLDALGRPVTQRFWGIESG------VATGYSSSEEKPF  1237

Query  1241  SAPNSVDKALSLENTRIPVAQFSVYQPQSWMISLQLDDIEIWIRANNITPEYLFQNHILI  1300
             S+PN +D A++L    +PVAQ  VY P+SWM  +  + ++   + ++   E L +++I+ 
Sbjct  1238  SPPNDIDTAINLTGP-LPVAQCLVYAPDSWMPLFSQETFNTLTQEEQ---ETLRDSRIIT  1293

Query  1301  DNYYLCPLALRRWGRQNNLLITEGVGLTLKNPMRQPPHILTVVVDNYFSASEPQQHQQTL  1360
             ++  +C+L+ RRW + ++  I+  +   L N++  PPH LT+  D Y   SE Q +QQ +
Sbjct  1294  EDWRICALTRRRWLQSQK--ISTPLVKLLTNSIGLPPHNLTLTTDRYDRDSEQQIRQQ-V  1350

Query  1361  AFSDGFGRVLLSARRVETGPSYSFDPENGLLVDDKGNLVQLEVDQRWAVSGRTEYDNKGL  1420
             AFSDGFGR+L ++ R E+G +   + + +L+          +   RWAV+GRTEYDNKG 
Sbjct  1351  AFSDGFGRLLQASVRHEAGEAWQRNQDGSLVTKVE------NTKTRWAVTGRTEYDNKGQ  1404

Query  1421  PRRRYQPYFFDNWIWLYIANNRTLKEAYADTHIYDPLGREIKVITAKGYLRRTHYFPWFV  1480
               R YQPYF+++W   Y++++ + KEAYADTHIYDP+GREI+VITAKG LR+++YFPWF 
Sbjct  1405  TIRTYQPYFLNDWR--YVSDDSARKEAYADTHIYDPIGREIRVITAKGWLRQSQYFPWFT  1462

Query  1481  ISEDENDTASE  1491
             +SEDENDTA++
Sbjct  1463  VSEDENDTAAD  1473

20) tcaC1 in NC_005810


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1140 bits (4322),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 727/1511 (49%), Positives = 1043/1511 (70%), Gaps = 61/1511 (4%)

Query  3     NSKQQVAVAPLSLPKGGGAITGMGDSLGPIGPSGMATLTLPLPISAGRGYAPSLTLSYSS  62
             ++ Q  +V+ LSLPKGGGAITGMG++L P GP GMA+L+LPLPISAGRGYAPSLTL+Y+S
Sbjct  2     QNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNS  61

Query  63    GSGNGPFGLGWQLGTMAIRRRTNAQVPRYDEYDEFLAPNGEVMVVAADPQGSIE-RTEQS  121
             G+GN+PFGLGW+ G MAIRRRT++ VP YDE D FL+P+GEV+VVA +  G  + R+E S
Sbjct  62    GTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESS  121

Query  122   LNG----EQFSVIRYLPRIEGNFHRIEYWRPRTNNSQAPFWLVHSSDGQKHCLGYSAAAR  177
             L+G      F+V  Y +R+E++F+R+EYW+P+T  + + FWL+ S+DGQ H LG ++ AR
Sbjct  122   LQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGA-TDFWLIYSPDGQVHLLGKNPQAR  180

Query  178   IADPLHPEHIAEWLLEESVSLSGEHIGYQYQAEDEQGIDEPSIYKAEKQNHPAASAQRYL  237
             I++PL+ ++ A+WLLE S+S  +E+I YQY+AEDE G +       E   HP+A+ QRYL
Sbjct  181   ISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCE-----TDELAAHPSATVQRYL  235

Query  238   KRVVYGNRQAAYELYCL--TQQPAPTSWLFSLIFDHGEYSNIAEQVPVIIKGKSWNFRQD  295
             + V YGN  A+ +++     ++P  ++W+F L+FD GE  N   ++P++    +W  R+D
Sbjct  236   QTVHYGNLTAS-DVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRKD  294

Query  296   AFSHFNYGFEVRTRRLCQQVLMYHNLSALKGDE-PDAQATLVSRLRLHYQHDAYATQLVG  354
              FS+++YGFE+RTRRLC+Q+LM+H L +L G+   D +++LVSRL L+Y+++A  + LV+
Sbjct  295   RFSRYEYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVS  354

Query  355   CQQLAHEPDGTKRSLPPLEFDYQDFSTRDALGWQPLTDWAEFNY--QYQMVDLNGEGMPG  412
              ++++HE + T  +LPPLE+ YQ F   ++  WQ++   A+FN   + Q++DL+GEG+PG
Sbjct  355   VRRVGHEDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPG  414

Query  413   MLYQDSGHWIYRPPVRQPGTA-DGITFGAAQRLPSLPAMRENAMLMDINGDGKLDWVISQ  471
             +LYQD   W YR++ RQ+G   +++T G  Q LP  PA+++NA LMDINGDG+LDWVI+ 
Sbjct  415   ILYQDRNGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITG  474

Query  472   PGLAGYFSRDPDLSRDPDLSWTQFIPLSTLPAEYFHPQAQLVDLAGSGLSDLALVGPKSV  531
             PGL GY S++PD S      WT+F PL +LP EY HP+AQL DL G+GLSDL L+GPKSV
Sbjct  475   PGLRGYHSQHPDGS------WTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSV  528

Query  532   RVYTNLCDSFAAATQVAQDDDITLPLPGVHFTELVAFSDVMGSGQQHLVRIRHNSVTCWP  591
             R+Y N  D+F+ + +V Q +DITLPLPG +   LVAFSDV+GSGQ HLV +    VTCWP
Sbjct  529   RLYVNNRDGFTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWP  588

Query  592   NLGHGRFGHPLSLPGFNQPVEQFNPLAIYLADIDGSGTIDLIYATTSQLLIYRNQSGNRF  651
             NLGHGRFG+P+ LPGF+Q+   FNP  + LAD+DGSG  DLIY  + +L I+ N+SGN F
Sbjct  589   NLGHGRFGQPIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGF  648

Query  652   AEPLAIALPTGIRFDNSCQLSLADIQGLGVASIMLSVPHPTTQHWRYDFVASKPYLLCTT  711
             A P+++++P G+RFD++CQL +AD+QGLGV S++LSVPH + +HWR D+  +KP LL  T
Sbjct  649   AKPFTLSFPDGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSET  708

Query  712   NNNMGAESQLLYRSSVQFWLDEKAQAAKQGRSLACQLPFPIHLLAQTTQFDEITGNSLSQ  771
             NNNMGA+  L YRSSVQFWLDEKA A   G++  C LPFP+H L QT   DEI+GN L  
Sbjct  709   NNNMGANHTLHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVT  768

Query  772   TARYFHGFYDGVQREFSGFGRVDTLDTDTSAQGSAAERTAPTKSSRWFHTGRAGNETLWQ  831
             T RY HG  DG +REF GFG V+  D++  AQG+A+ERT+P+ +  W+ TG ++ +    
Sbjct  769   TLRYAHGAWDGREREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPAVDNALS  828

Query  832   SEYWQGDDQAYSLLPTRLTKFINNTQGDEL-LSELDDNQTFWLHRALKGSLLRSELYGLD  890
             + YW+GD QA++ +  R   F    +G ++ L+  DD++ +WL+RALKG  LRSELYGLD
Sbjct  829   AGYWRGDKQAFAGFTPR---FTLWKEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLD  885

Query  891   DSELATQPYSVNSSRYQVRQIQSSADGISSPVALPMVLEQLSYHYERIAQDPQCSQQIVL  950
             +S     PY+V  SR QVRQ+Q +A    SPV  + V+E  SYHYERI  DPQC+Q+I L
Sbjct  886   GSAQQQIPYTVTESRPQVRQLQDGA--TVSPVLWASVVESRSYHYERIISDPQCNQDITL  943

Query  951   RCNEYGHPLHSVTINYPRRDKARISPYS-WLAKEHWDSHFDEQQQQLRITESQQSYHHEI  1009
               + +G+PL  V+++YPRR+K+  +PY+  L+     S +D+QQQ LR+T  Q S HH I
Sbjct  944   SSDLFGQPLKQVSVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLI  1003

Query  1010  SDKFYVLGLPAGQRSDVLTYPDNFVPTAGIHWEELQQPEGLLGTKAERTFTAQQQVFYTS  1069
             ++ + VLGLP G RSD +TY  + VP  G++ E L   ++L++    R +  QQ+ FYT 
Sbjct  1004  GNELRVLGLPDGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTD  1063

Query  1070  D---------TIPGLVAYSQQAEFDDQTLVALDELLPANERKQQLIKAGYQIAPRLFART  1120
             +         T  +L+A+++ A + +  L A+D  + ++E    L +AGYQ  P LF+RT
Sbjct  1064  GKNQTPLKTPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRT  1123

Query  1121  GETDIWVAQSGFTDYGDASRFYRPISQRSTQLVGKTILEWDATCCAVSDIILADYSITHA  1180
             GE  +WVA+ G+TDYG  ++F RP++QR++ L GK  L WD+  C +++   A      A
Sbjct  1124  GENKVWVARQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSA  1183

Query  1181  EYDYRFITPYLLIDINDNQHYIELDALGRVTSSRFAGTEIDPQTNKVIETGFPSIAEQPF  1240
             +YD RF+TP  L DINDN H I LDALGR  + RF G E +      + TG++S  E+PF
Sbjct  1184  NYDWRFLTPTQLTDINDNVHLITLDALGRPVTQRFWGIESG------VATGYSSSEEKPF  1237

Query  1241  SAPNSVDKALSLENTRIPVAQFSVYQPQSWMISLQLDDIEIWIRANNITPEYLFQNHILI  1300
             S+PN +D A++L    +PVAQ  VY P+SWM  +  + ++   + ++   E L +++I+ 
Sbjct  1238  SPPNDIDTAINLTGP-LPVAQCLVYAPDSWMPLFSQETFNTLTQEEQ---ETLRDSRIIT  1293

Query  1301  DNYYLCPLALRRWGRQNNLLITEGVGLTLKNPMRQPPHILTVVVDNYFSASEPQQHQQTL  1360
             ++  +C+L+ RRW + ++  I+  +   L N++  PPH LT+  D Y   SE Q +QQ +
Sbjct  1294  EDWRICALTRRRWLQSQK--ISTPLVKLLTNSIGLPPHNLTLTTDRYDRDSEQQIRQQ-V  1350

Query  1361  AFSDGFGRVLLSARRVETGPSYSFDPENGLLVDDKGNLVQLEVDQRWAVSGRTEYDNKGL  1420
             AFSDGFGR+L ++ R E+G +   + + +L+          +   RWAV+GRTEYDNKG 
Sbjct  1351  AFSDGFGRLLQASVRHEAGEAWQRNQDGSLVTKVE------NTKTRWAVTGRTEYDNKGQ  1404

Query  1421  PRRRYQPYFFDNWIWLYIANNRTLKEAYADTHIYDPLGREIKVITAKGYLRRTHYFPWFV  1480
               R YQPYF+++W   Y++++ + KEAYADTHIYDP+GREI+VITAKG LR+++YFPWF 
Sbjct  1405  TIRTYQPYFLNDWR--YVSDDSARKEAYADTHIYDPIGREIRVITAKGWLRQSQYFPWFT  1462

Query  1481  ISEDENDTASE  1491
             +SEDENDTA++
Sbjct  1463  VSEDENDTAAD  1473

21) tcaC in NC_003143


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1140 bits (4322),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 727/1511 (49%), Positives = 1043/1511 (70%), Gaps = 61/1511 (4%)

Query  3     NSKQQVAVAPLSLPKGGGAITGMGDSLGPIGPSGMATLTLPLPISAGRGYAPSLTLSYSS  62
             ++ Q  +V+ LSLPKGGGAITGMG++L P GP GMA+L+LPLPISAGRGYAPSLTL+Y+S
Sbjct  2     QNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNS  61

Query  63    GSGNGPFGLGWQLGTMAIRRRTNAQVPRYDEYDEFLAPNGEVMVVAADPQGSIE-RTEQS  121
             G+GN+PFGLGW+ G MAIRRRT++ VP YDE D FL+P+GEV+VVA +  G  + R+E S
Sbjct  62    GTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESS  121

Query  122   LNG----EQFSVIRYLPRIEGNFHRIEYWRPRTNNSQAPFWLVHSSDGQKHCLGYSAAAR  177
             L+G      F+V  Y +R+E++F+R+EYW+P+T  + + FWL+ S+DGQ H LG ++ AR
Sbjct  122   LQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGA-TDFWLIYSPDGQVHLLGKNPQAR  180

Query  178   IADPLHPEHIAEWLLEESVSLSGEHIGYQYQAEDEQGIDEPSIYKAEKQNHPAASAQRYL  237
             I++PL+ ++ A+WLLE S+S  +E+I YQY+AEDE G +       E   HP+A+ QRYL
Sbjct  181   ISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCE-----TDELAAHPSATVQRYL  235

Query  238   KRVVYGNRQAAYELYCL--TQQPAPTSWLFSLIFDHGEYSNIAEQVPVIIKGKSWNFRQD  295
             + V YGN  A+ +++     ++P  ++W+F L+FD GE  N   ++P++    +W  R+D
Sbjct  236   QTVHYGNLTAS-DVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRKD  294

Query  296   AFSHFNYGFEVRTRRLCQQVLMYHNLSALKGDE-PDAQATLVSRLRLHYQHDAYATQLVG  354
              FS+++YGFE+RTRRLC+Q+LM+H L +L G+   D +++LVSRL L+Y+++A  + LV+
Sbjct  295   RFSRYEYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVS  354

Query  355   CQQLAHEPDGTKRSLPPLEFDYQDFSTRDALGWQPLTDWAEFNY--QYQMVDLNGEGMPG  412
              ++++HE + T  +LPPLE+ YQ F   ++  WQ++   A+FN   + Q++DL+GEG+PG
Sbjct  355   VRRVGHEDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPG  414

Query  413   MLYQDSGHWIYRPPVRQPGTA-DGITFGAAQRLPSLPAMRENAMLMDINGDGKLDWVISQ  471
             +LYQD   W YR++ RQ+G   +++T G  Q LP  PA+++NA LMDINGDG+LDWVI+ 
Sbjct  415   ILYQDRNGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITG  474

Query  472   PGLAGYFSRDPDLSRDPDLSWTQFIPLSTLPAEYFHPQAQLVDLAGSGLSDLALVGPKSV  531
             PGL GY S++PD S      WT+F PL +LP EY HP+AQL DL G+GLSDL L+GPKSV
Sbjct  475   PGLRGYHSQHPDGS------WTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSV  528

Query  532   RVYTNLCDSFAAATQVAQDDDITLPLPGVHFTELVAFSDVMGSGQQHLVRIRHNSVTCWP  591
             R+Y N  D+F+ + +V Q +DITLPLPG +   LVAFSDV+GSGQ HLV +    VTCWP
Sbjct  529   RLYVNNRDGFTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWP  588

Query  592   NLGHGRFGHPLSLPGFNQPVEQFNPLAIYLADIDGSGTIDLIYATTSQLLIYRNQSGNRF  651
             NLGHGRFG+P+ LPGF+Q+   FNP  + LAD+DGSG  DLIY  + +L I+ N+SGN F
Sbjct  589   NLGHGRFGQPIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGF  648

Query  652   AEPLAIALPTGIRFDNSCQLSLADIQGLGVASIMLSVPHPTTQHWRYDFVASKPYLLCTT  711
             A P+++++P G+RFD++CQL +AD+QGLGV S++LSVPH + +HWR D+  +KP LL  T
Sbjct  649   AKPFTLSFPDGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSET  708

Query  712   NNNMGAESQLLYRSSVQFWLDEKAQAAKQGRSLACQLPFPIHLLAQTTQFDEITGNSLSQ  771
             NNNMGA+  L YRSSVQFWLDEKA A   G++  C LPFP+H L QT   DEI+GN L  
Sbjct  709   NNNMGANHTLHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVT  768

Query  772   TARYFHGFYDGVQREFSGFGRVDTLDTDTSAQGSAAERTAPTKSSRWFHTGRAGNETLWQ  831
             T RY HG  DG +REF GFG V+  D++  AQG+A+ERT+P+ +  W+ TG ++ +    
Sbjct  769   TLRYAHGAWDGREREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPAVDNALS  828

Query  832   SEYWQGDDQAYSLLPTRLTKFINNTQGDEL-LSELDDNQTFWLHRALKGSLLRSELYGLD  890
             + YW+GD QA++ +  R   F    +G ++ L+  DD++ +WL+RALKG  LRSELYGLD
Sbjct  829   AGYWRGDKQAFAGFTPR---FTLWKEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLD  885

Query  891   DSELATQPYSVNSSRYQVRQIQSSADGISSPVALPMVLEQLSYHYERIAQDPQCSQQIVL  950
             +S     PY+V  SR QVRQ+Q +A    SPV  + V+E  SYHYERI  DPQC+Q+I L
Sbjct  886   GSAQQQIPYTVTESRPQVRQLQDGA--TVSPVLWASVVESRSYHYERIISDPQCNQDITL  943

Query  951   RCNEYGHPLHSVTINYPRRDKARISPYS-WLAKEHWDSHFDEQQQQLRITESQQSYHHEI  1009
               + +G+PL  V+++YPRR+K+  +PY+  L+     S +D+QQQ LR+T  Q S HH I
Sbjct  944   SSDLFGQPLKQVSVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLI  1003

Query  1010  SDKFYVLGLPAGQRSDVLTYPDNFVPTAGIHWEELQQPEGLLGTKAERTFTAQQQVFYTS  1069
             ++ + VLGLP G RSD +TY  + VP  G++ E L   ++L++    R +  QQ+ FYT 
Sbjct  1004  GNELRVLGLPDGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTD  1063

Query  1070  D---------TIPGLVAYSQQAEFDDQTLVALDELLPANERKQQLIKAGYQIAPRLFART  1120
             +         T  +L+A+++ A + +  L A+D  + ++E    L +AGYQ  P LF+RT
Sbjct  1064  GKNQTPLKTPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRT  1123

Query  1121  GETDIWVAQSGFTDYGDASRFYRPISQRSTQLVGKTILEWDATCCAVSDIILADYSITHA  1180
             GE  +WVA+ G+TDYG  ++F RP++QR++ L GK  L WD+  C +++   A      A
Sbjct  1124  GENKVWVARQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSA  1183

Query  1181  EYDYRFITPYLLIDINDNQHYIELDALGRVTSSRFAGTEIDPQTNKVIETGFPSIAEQPF  1240
             +YD RF+TP  L DINDN H I LDALGR  + RF G E +      + TG++S  E+PF
Sbjct  1184  NYDWRFLTPTQLTDINDNVHLITLDALGRPVTQRFWGIESG------VATGYSSSEEKPF  1237

Query  1241  SAPNSVDKALSLENTRIPVAQFSVYQPQSWMISLQLDDIEIWIRANNITPEYLFQNHILI  1300
             S+PN +D A++L    +PVAQ  VY P+SWM  +  + ++   + ++   E L +++I+ 
Sbjct  1238  SPPNDIDTAINLTGP-LPVAQCLVYAPDSWMPLFSQETFNTLTQEEQ---ETLRDSRIIT  1293

Query  1301  DNYYLCPLALRRWGRQNNLLITEGVGLTLKNPMRQPPHILTVVVDNYFSASEPQQHQQTL  1360
             ++  +C+L+ RRW + ++  I+  +   L N++  PPH LT+  D Y   SE Q +QQ +
Sbjct  1294  EDWRICALTRRRWLQSQK--ISTPLVKLLTNSIGLPPHNLTLTTDRYDRDSEQQIRQQ-V  1350

Query  1361  AFSDGFGRVLLSARRVETGPSYSFDPENGLLVDDKGNLVQLEVDQRWAVSGRTEYDNKGL  1420
             AFSDGFGR+L ++ R E+G +   + + +L+          +   RWAV+GRTEYDNKG 
Sbjct  1351  AFSDGFGRLLQASVRHEAGEAWQRNQDGSLVTKVE------NTKTRWAVTGRTEYDNKGQ  1404

Query  1421  PRRRYQPYFFDNWIWLYIANNRTLKEAYADTHIYDPLGREIKVITAKGYLRRTHYFPWFV  1480
               R YQPYF+++W   Y++++ + KEAYADTHIYDP+GREI+VITAKG LR+++YFPWF 
Sbjct  1405  TIRTYQPYFLNDWR--YVSDDSARKEAYADTHIYDPIGREIRVITAKGWLRQSQYFPWFT  1462

Query  1481  ISEDENDTASE  1491
             +SEDENDTA++
Sbjct  1463  VSEDENDTAAD  1473

22) YPD4_3151 in NC_017154


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1140 bits (4322),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 727/1511 (49%), Positives = 1043/1511 (70%), Gaps = 61/1511 (4%)

Query  3     NSKQQVAVAPLSLPKGGGAITGMGDSLGPIGPSGMATLTLPLPISAGRGYAPSLTLSYSS  62
             ++ Q  +V+ LSLPKGGGAITGMG++L P GP GMA+L+LPLPISAGRGYAPSLTL+Y+S
Sbjct  2     QNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNS  61

Query  63    GSGNGPFGLGWQLGTMAIRRRTNAQVPRYDEYDEFLAPNGEVMVVAADPQGSIE-RTEQS  121
             G+GN+PFGLGW+ G MAIRRRT++ VP YDE D FL+P+GEV+VVA +  G  + R+E S
Sbjct  62    GTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESS  121

Query  122   LNG----EQFSVIRYLPRIEGNFHRIEYWRPRTNNSQAPFWLVHSSDGQKHCLGYSAAAR  177
             L+G      F+V  Y +R+E++F+R+EYW+P+T  + + FWL+ S+DGQ H LG ++ AR
Sbjct  122   LQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGA-TDFWLIYSPDGQVHLLGKNPQAR  180

Query  178   IADPLHPEHIAEWLLEESVSLSGEHIGYQYQAEDEQGIDEPSIYKAEKQNHPAASAQRYL  237
             I++PL+ ++ A+WLLE S+S  +E+I YQY+AEDE G +       E   HP+A+ QRYL
Sbjct  181   ISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCE-----TDELAAHPSATVQRYL  235

Query  238   KRVVYGNRQAAYELYCL--TQQPAPTSWLFSLIFDHGEYSNIAEQVPVIIKGKSWNFRQD  295
             + V YGN  A+ +++     ++P  ++W+F L+FD GE  N   ++P++    +W  R+D
Sbjct  236   QTVHYGNLTAS-DVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRKD  294

Query  296   AFSHFNYGFEVRTRRLCQQVLMYHNLSALKGDE-PDAQATLVSRLRLHYQHDAYATQLVG  354
              FS+++YGFE+RTRRLC+Q+LM+H L +L G+   D +++LVSRL L+Y+++A  + LV+
Sbjct  295   RFSRYEYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVS  354

Query  355   CQQLAHEPDGTKRSLPPLEFDYQDFSTRDALGWQPLTDWAEFNY--QYQMVDLNGEGMPG  412
              ++++HE + T  +LPPLE+ YQ F   ++  WQ++   A+FN   + Q++DL+GEG+PG
Sbjct  355   VRRVGHEDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPG  414

Query  413   MLYQDSGHWIYRPPVRQPGTA-DGITFGAAQRLPSLPAMRENAMLMDINGDGKLDWVISQ  471
             +LYQD   W YR++ RQ+G   +++T G  Q LP  PA+++NA LMDINGDG+LDWVI+ 
Sbjct  415   ILYQDRNGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITG  474

Query  472   PGLAGYFSRDPDLSRDPDLSWTQFIPLSTLPAEYFHPQAQLVDLAGSGLSDLALVGPKSV  531
             PGL GY S++PD S      WT+F PL +LP EY HP+AQL DL G+GLSDL L+GPKSV
Sbjct  475   PGLRGYHSQHPDGS------WTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSV  528

Query  532   RVYTNLCDSFAAATQVAQDDDITLPLPGVHFTELVAFSDVMGSGQQHLVRIRHNSVTCWP  591
             R+Y N  D+F+ + +V Q +DITLPLPG +   LVAFSDV+GSGQ HLV +    VTCWP
Sbjct  529   RLYVNNRDGFTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWP  588

Query  592   NLGHGRFGHPLSLPGFNQPVEQFNPLAIYLADIDGSGTIDLIYATTSQLLIYRNQSGNRF  651
             NLGHGRFG+P+ LPGF+Q+   FNP  + LAD+DGSG  DLIY  + +L I+ N+SGN F
Sbjct  589   NLGHGRFGQPIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGF  648

Query  652   AEPLAIALPTGIRFDNSCQLSLADIQGLGVASIMLSVPHPTTQHWRYDFVASKPYLLCTT  711
             A P+++++P G+RFD++CQL +AD+QGLGV S++LSVPH + +HWR D+  +KP LL  T
Sbjct  649   AKPFTLSFPDGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSET  708

Query  712   NNNMGAESQLLYRSSVQFWLDEKAQAAKQGRSLACQLPFPIHLLAQTTQFDEITGNSLSQ  771
             NNNMGA+  L YRSSVQFWLDEKA A   G++  C LPFP+H L QT   DEI+GN L  
Sbjct  709   NNNMGANHTLHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVT  768

Query  772   TARYFHGFYDGVQREFSGFGRVDTLDTDTSAQGSAAERTAPTKSSRWFHTGRAGNETLWQ  831
             T RY HG  DG +REF GFG V+  D++  AQG+A+ERT+P+ +  W+ TG ++ +    
Sbjct  769   TLRYAHGAWDGREREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPAVDNALS  828

Query  832   SEYWQGDDQAYSLLPTRLTKFINNTQGDEL-LSELDDNQTFWLHRALKGSLLRSELYGLD  890
             + YW+GD QA++ +  R   F    +G ++ L+  DD++ +WL+RALKG  LRSELYGLD
Sbjct  829   AGYWRGDKQAFAGFTPR---FTLWKEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLD  885

Query  891   DSELATQPYSVNSSRYQVRQIQSSADGISSPVALPMVLEQLSYHYERIAQDPQCSQQIVL  950
             +S     PY+V  SR QVRQ+Q +A    SPV  + V+E  SYHYERI  DPQC+Q+I L
Sbjct  886   GSAQQQIPYTVTESRPQVRQLQDGA--TVSPVLWASVVESRSYHYERIISDPQCNQDITL  943

Query  951   RCNEYGHPLHSVTINYPRRDKARISPYS-WLAKEHWDSHFDEQQQQLRITESQQSYHHEI  1009
               + +G+PL  V+++YPRR+K+  +PY+  L+     S +D+QQQ LR+T  Q S HH I
Sbjct  944   SSDLFGQPLKQVSVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLI  1003

Query  1010  SDKFYVLGLPAGQRSDVLTYPDNFVPTAGIHWEELQQPEGLLGTKAERTFTAQQQVFYTS  1069
             ++ + VLGLP G RSD +TY  + VP  G++ E L   ++L++    R +  QQ+ FYT 
Sbjct  1004  GNELRVLGLPDGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTD  1063

Query  1070  D---------TIPGLVAYSQQAEFDDQTLVALDELLPANERKQQLIKAGYQIAPRLFART  1120
             +         T  +L+A+++ A + +  L A+D  + ++E    L +AGYQ  P LF+RT
Sbjct  1064  GKNQTPLKTPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRT  1123

Query  1121  GETDIWVAQSGFTDYGDASRFYRPISQRSTQLVGKTILEWDATCCAVSDIILADYSITHA  1180
             GE  +WVA+ G+TDYG  ++F RP++QR++ L GK  L WD+  C +++   A      A
Sbjct  1124  GENKVWVARQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSA  1183

Query  1181  EYDYRFITPYLLIDINDNQHYIELDALGRVTSSRFAGTEIDPQTNKVIETGFPSIAEQPF  1240
             +YD RF+TP  L DINDN H I LDALGR  + RF G E +      + TG++S  E+PF
Sbjct  1184  NYDWRFLTPTQLTDINDNVHLITLDALGRPVTQRFWGIESG------VATGYSSSEEKPF  1237

Query  1241  SAPNSVDKALSLENTRIPVAQFSVYQPQSWMISLQLDDIEIWIRANNITPEYLFQNHILI  1300
             S+PN +D A++L    +PVAQ  VY P+SWM  +  + ++   + ++   E L +++I+ 
Sbjct  1238  SPPNDIDTAINLTGP-LPVAQCLVYAPDSWMPLFSQETFNTLTQEEQ---ETLRDSRIIT  1293

Query  1301  DNYYLCPLALRRWGRQNNLLITEGVGLTLKNPMRQPPHILTVVVDNYFSASEPQQHQQTL  1360
             ++  +C+L+ RRW + ++  I+  +   L N++  PPH LT+  D Y   SE Q +QQ +
Sbjct  1294  EDWRICALTRRRWLQSQK--ISTPLVKLLTNSIGLPPHNLTLTTDRYDRDSEQQIRQQ-V  1350

Query  1361  AFSDGFGRVLLSARRVETGPSYSFDPENGLLVDDKGNLVQLEVDQRWAVSGRTEYDNKGL  1420
             AFSDGFGR+L ++ R E+G +   + + +L+          +   RWAV+GRTEYDNKG 
Sbjct  1351  AFSDGFGRLLQASVRHEAGEAWQRNQDGSLVTKVE------NTKTRWAVTGRTEYDNKGQ  1404

Query  1421  PRRRYQPYFFDNWIWLYIANNRTLKEAYADTHIYDPLGREIKVITAKGYLRRTHYFPWFV  1480
               R YQPYF+++W   Y++++ + KEAYADTHIYDP+GREI+VITAKG LR+++YFPWF 
Sbjct  1405  TIRTYQPYFLNDWR--YVSDDSARKEAYADTHIYDPIGREIRVITAKGWLRQSQYFPWFT  1462

Query  1481  ISEDENDTASE  1491
             +SEDENDTA++
Sbjct  1463  VSEDENDTAAD  1473

23) YPD8_3175 in NC_017160


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1140 bits (4322),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 727/1511 (49%), Positives = 1043/1511 (70%), Gaps = 61/1511 (4%)

Query  3     NSKQQVAVAPLSLPKGGGAITGMGDSLGPIGPSGMATLTLPLPISAGRGYAPSLTLSYSS  62
             ++ Q  +V+ LSLPKGGGAITGMG++L P GP GMA+L+LPLPISAGRGYAPSLTL+Y+S
Sbjct  2     QNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNS  61

Query  63    GSGNGPFGLGWQLGTMAIRRRTNAQVPRYDEYDEFLAPNGEVMVVAADPQGSIE-RTEQS  121
             G+GN+PFGLGW+ G MAIRRRT++ VP YDE D FL+P+GEV+VVA +  G  + R+E S
Sbjct  62    GTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESS  121

Query  122   LNG----EQFSVIRYLPRIEGNFHRIEYWRPRTNNSQAPFWLVHSSDGQKHCLGYSAAAR  177
             L+G      F+V  Y +R+E++F+R+EYW+P+T  + + FWL+ S+DGQ H LG ++ AR
Sbjct  122   LQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGA-TDFWLIYSPDGQVHLLGKNPQAR  180

Query  178   IADPLHPEHIAEWLLEESVSLSGEHIGYQYQAEDEQGIDEPSIYKAEKQNHPAASAQRYL  237
             I++PL+ ++ A+WLLE S+S  +E+I YQY+AEDE G +       E   HP+A+ QRYL
Sbjct  181   ISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCE-----TDELAAHPSATVQRYL  235

Query  238   KRVVYGNRQAAYELYCL--TQQPAPTSWLFSLIFDHGEYSNIAEQVPVIIKGKSWNFRQD  295
             + V YGN  A+ +++     ++P  ++W+F L+FD GE  N   ++P++    +W  R+D
Sbjct  236   QTVHYGNLTAS-DVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRKD  294

Query  296   AFSHFNYGFEVRTRRLCQQVLMYHNLSALKGDE-PDAQATLVSRLRLHYQHDAYATQLVG  354
              FS+++YGFE+RTRRLC+Q+LM+H L +L G+   D +++LVSRL L+Y+++A  + LV+
Sbjct  295   RFSRYEYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVS  354

Query  355   CQQLAHEPDGTKRSLPPLEFDYQDFSTRDALGWQPLTDWAEFNY--QYQMVDLNGEGMPG  412
              ++++HE + T  +LPPLE+ YQ F   ++  WQ++   A+FN   + Q++DL+GEG+PG
Sbjct  355   VRRVGHEDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPG  414

Query  413   MLYQDSGHWIYRPPVRQPGTA-DGITFGAAQRLPSLPAMRENAMLMDINGDGKLDWVISQ  471
             +LYQD   W YR++ RQ+G   +++T G  Q LP  PA+++NA LMDINGDG+LDWVI+ 
Sbjct  415   ILYQDRNGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITG  474

Query  472   PGLAGYFSRDPDLSRDPDLSWTQFIPLSTLPAEYFHPQAQLVDLAGSGLSDLALVGPKSV  531
             PGL GY S++PD S      WT+F PL +LP EY HP+AQL DL G+GLSDL L+GPKSV
Sbjct  475   PGLRGYHSQHPDGS------WTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSV  528

Query  532   RVYTNLCDSFAAATQVAQDDDITLPLPGVHFTELVAFSDVMGSGQQHLVRIRHNSVTCWP  591
             R+Y N  D+F+ + +V Q +DITLPLPG +   LVAFSDV+GSGQ HLV +    VTCWP
Sbjct  529   RLYVNNRDGFTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWP  588

Query  592   NLGHGRFGHPLSLPGFNQPVEQFNPLAIYLADIDGSGTIDLIYATTSQLLIYRNQSGNRF  651
             NLGHGRFG+P+ LPGF+Q+   FNP  + LAD+DGSG  DLIY  + +L I+ N+SGN F
Sbjct  589   NLGHGRFGQPIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGF  648

Query  652   AEPLAIALPTGIRFDNSCQLSLADIQGLGVASIMLSVPHPTTQHWRYDFVASKPYLLCTT  711
             A P+++++P G+RFD++CQL +AD+QGLGV S++LSVPH + +HWR D+  +KP LL  T
Sbjct  649   AKPFTLSFPDGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSET  708

Query  712   NNNMGAESQLLYRSSVQFWLDEKAQAAKQGRSLACQLPFPIHLLAQTTQFDEITGNSLSQ  771
             NNNMGA+  L YRSSVQFWLDEKA A   G++  C LPFP+H L QT   DEI+GN L  
Sbjct  709   NNNMGANHTLHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVT  768

Query  772   TARYFHGFYDGVQREFSGFGRVDTLDTDTSAQGSAAERTAPTKSSRWFHTGRAGNETLWQ  831
             T RY HG  DG +REF GFG V+  D++  AQG+A+ERT+P+ +  W+ TG ++ +    
Sbjct  769   TLRYAHGAWDGREREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPAVDNALS  828

Query  832   SEYWQGDDQAYSLLPTRLTKFINNTQGDEL-LSELDDNQTFWLHRALKGSLLRSELYGLD  890
             + YW+GD QA++ +  R   F    +G ++ L+  DD++ +WL+RALKG  LRSELYGLD
Sbjct  829   AGYWRGDKQAFAGFTPR---FTLWKEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLD  885

Query  891   DSELATQPYSVNSSRYQVRQIQSSADGISSPVALPMVLEQLSYHYERIAQDPQCSQQIVL  950
             +S     PY+V  SR QVRQ+Q +A    SPV  + V+E  SYHYERI  DPQC+Q+I L
Sbjct  886   GSAQQQIPYTVTESRPQVRQLQDGA--TVSPVLWASVVESRSYHYERIISDPQCNQDITL  943

Query  951   RCNEYGHPLHSVTINYPRRDKARISPYS-WLAKEHWDSHFDEQQQQLRITESQQSYHHEI  1009
               + +G+PL  V+++YPRR+K+  +PY+  L+     S +D+QQQ LR+T  Q S HH I
Sbjct  944   SSDLFGQPLKQVSVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLI  1003

Query  1010  SDKFYVLGLPAGQRSDVLTYPDNFVPTAGIHWEELQQPEGLLGTKAERTFTAQQQVFYTS  1069
             ++ + VLGLP G RSD +TY  + VP  G++ E L   ++L++    R +  QQ+ FYT 
Sbjct  1004  GNELRVLGLPDGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTD  1063

Query  1070  D---------TIPGLVAYSQQAEFDDQTLVALDELLPANERKQQLIKAGYQIAPRLFART  1120
             +         T  +L+A+++ A + +  L A+D  + ++E    L +AGYQ  P LF+RT
Sbjct  1064  GKNQTPLKTPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRT  1123

Query  1121  GETDIWVAQSGFTDYGDASRFYRPISQRSTQLVGKTILEWDATCCAVSDIILADYSITHA  1180
             GE  +WVA+ G+TDYG  ++F RP++QR++ L GK  L WD+  C +++   A      A
Sbjct  1124  GENKVWVARQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSA  1183

Query  1181  EYDYRFITPYLLIDINDNQHYIELDALGRVTSSRFAGTEIDPQTNKVIETGFPSIAEQPF  1240
             +YD RF+TP  L DINDN H I LDALGR  + RF G E +      + TG++S  E+PF
Sbjct  1184  NYDWRFLTPTQLTDINDNVHLITLDALGRPVTQRFWGIESG------VATGYSSSEEKPF  1237

Query  1241  SAPNSVDKALSLENTRIPVAQFSVYQPQSWMISLQLDDIEIWIRANNITPEYLFQNHILI  1300
             S+PN +D A++L    +PVAQ  VY P+SWM  +  + ++   + ++   E L +++I+ 
Sbjct  1238  SPPNDIDTAINLTGP-LPVAQCLVYAPDSWMPLFSQETFNTLTQEEQ---ETLRDSRIIT  1293

Query  1301  DNYYLCPLALRRWGRQNNLLITEGVGLTLKNPMRQPPHILTVVVDNYFSASEPQQHQQTL  1360
             ++  +C+L+ RRW + ++  I+  +   L N++  PPH LT+  D Y   SE Q +QQ +
Sbjct  1294  EDWRICALTRRRWLQSQK--ISTPLVKLLTNSIGLPPHNLTLTTDRYDRDSEQQIRQQ-V  1350

Query  1361  AFSDGFGRVLLSARRVETGPSYSFDPENGLLVDDKGNLVQLEVDQRWAVSGRTEYDNKGL  1420
             AFSDGFGR+L ++ R E+G +   + + +L+          +   RWAV+GRTEYDNKG 
Sbjct  1351  AFSDGFGRLLQASVRHEAGEAWQRNQDGSLVTKVE------NTKTRWAVTGRTEYDNKGQ  1404

Query  1421  PRRRYQPYFFDNWIWLYIANNRTLKEAYADTHIYDPLGREIKVITAKGYLRRTHYFPWFV  1480
               R YQPYF+++W   Y++++ + KEAYADTHIYDP+GREI+VITAKG LR+++YFPWF 
Sbjct  1405  TIRTYQPYFLNDWR--YVSDDSARKEAYADTHIYDPIGREIRVITAKGWLRQSQYFPWFT  1462

Query  1481  ISEDENDTASE  1491
             +SEDENDTA++
Sbjct  1463  VSEDENDTAAD  1473

24) tcaC1 in NC_004088


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1140 bits (4325),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 727/1511 (49%), Positives = 1043/1511 (70%), Gaps = 61/1511 (4%)

Query  23    NSKQQVAVAPLSLPKGGGAITGMGDSLGPIGPSGMATLTLPLPISAGRGYAPSLTLSYSS  82
             ++ Q  +V+ LSLPKGGGAITGMG++L P GP GMA+L+LPLPISAGRGYAPSLTL+Y+S
Sbjct  2     QNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNS  61

Query  83    GSGNGPFGLGWQLGTMAIRRRTNAQVPRYDEYDEFLAPNGEVMVVAADPQGSIE-RTEQS  141
             G+GN+PFGLGW+ G MAIRRRT++ VP YDE D FL+P+GEV+VVA +  G  + R+E S
Sbjct  62    GTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESS  121

Query  142   LNG----EQFSVIRYLPRIEGNFHRIEYWRPRTNNSQAPFWLVHSSDGQKHCLGYSAAAR  197
             L+G      F+V  Y +R+E++F+R+EYW+P+T  + + FWL+ S+DGQ H LG ++ AR
Sbjct  122   LQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGA-TDFWLIYSPDGQVHLLGKNPQAR  180

Query  198   IADPLHPEHIAEWLLEESVSLSGEHIGYQYQAEDEQGIDEPSIYKAEKQNHPAASAQRYL  257
             I++PL+ ++ A+WLLE S+S  +E+I YQY+AEDE G +       E   HP+A+ QRYL
Sbjct  181   ISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCE-----TDELAAHPSATVQRYL  235

Query  258   KRVVYGNRQAAYELYCL--TQQPAPTSWLFSLIFDHGEYSNIAEQVPVIIKGKSWNFRQD  315
             + V YGN  A+ +++     ++P  ++W+F L+FD GE  N   ++P++    +W  R+D
Sbjct  236   QTVHYGNLTAS-DVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRKD  294

Query  316   AFSHFNYGFEVRTRRLCQQVLMYHNLSALKGDE-PDAQATLVSRLRLHYQHDAYATQLVG  374
              FS+++YGFE+RTRRLC+Q+LM+H L +L G+   D +++LVSRL L+Y+++A  + LV+
Sbjct  295   RFSRYEYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVS  354

Query  375   CQQLAHEPDGTKRSLPPLEFDYQDFSTRDALGWQPLTDWAEFNY--QYQMVDLNGEGMPG  432
              ++++HE + T  +LPPLE+ YQ F   ++  WQ++   A+FN   + Q++DL+GEG+PG
Sbjct  355   VRRVGHEDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPG  414

Query  433   MLYQDSGHWIYRPPVRQPGTA-DGITFGAAQRLPSLPAMRENAMLMDINGDGKLDWVISQ  491
             +LYQD   W YR++ RQ+G   +++T G  Q LP  PA+++NA LMDINGDG+LDWVI+ 
Sbjct  415   ILYQDRNGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITG  474

Query  492   PGLAGYFSRDPDLSRDPDLSWTQFIPLSTLPAEYFHPQAQLVDLAGSGLSDLALVGPKSV  551
             PGL GY S++PD S      WT+F PL +LP EY HP+AQL DL G+GLSDL L+GPKSV
Sbjct  475   PGLRGYHSQHPDGS------WTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSV  528

Query  552   RVYTNLCDSFAAATQVAQDDDITLPLPGVHFTELVAFSDVMGSGQQHLVRIRHNSVTCWP  611
             R+Y N  D+F+ + +V Q +DITLPLPG +   LVAFSDV+GSGQ HLV +    VTCWP
Sbjct  529   RLYVNNRDGFTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWP  588

Query  612   NLGHGRFGHPLSLPGFNQPVEQFNPLAIYLADIDGSGTIDLIYATTSQLLIYRNQSGNRF  671
             NLGHGRFG+P+ LPGF+Q+   FNP  + LAD+DGSG  DLIY  + +L I+ N+SGN F
Sbjct  589   NLGHGRFGQPIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGF  648

Query  672   AEPLAIALPTGIRFDNSCQLSLADIQGLGVASIMLSVPHPTTQHWRYDFVASKPYLLCTT  731
             A P+++++P G+RFD++CQL +AD+QGLGV S++LSVPH + +HWR D+  +KP LL  T
Sbjct  649   AKPFTLSFPDGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSET  708

Query  732   NNNMGAESQLLYRSSVQFWLDEKAQAAKQGRSLACQLPFPIHLLAQTTQFDEITGNSLSQ  791
             NNNMGA+  L YRSSVQFWLDEKA A   G++  C LPFP+H L QT   DEI+GN L  
Sbjct  709   NNNMGANHTLHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVT  768

Query  792   TARYFHGFYDGVQREFSGFGRVDTLDTDTSAQGSAAERTAPTKSSRWFHTGRAGNETLWQ  851
             T RY HG  DG +REF GFG V+  D++  AQG+A+ERT+P+ +  W+ TG ++ +    
Sbjct  769   TLRYAHGAWDGREREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPAVDNALS  828

Query  852   SEYWQGDDQAYSLLPTRLTKFINNTQGDEL-LSELDDNQTFWLHRALKGSLLRSELYGLD  910
             + YW+GD QA++ +  R   F    +G ++ L+  DD++ +WL+RALKG  LRSELYGLD
Sbjct  829   AGYWRGDKQAFAGFTPR---FTLWKEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLD  885

Query  911   DSELATQPYSVNSSRYQVRQIQSSADGISSPVALPMVLEQLSYHYERIAQDPQCSQQIVL  970
             +S     PY+V  SR QVRQ+Q +A    SPV  + V+E  SYHYERI  DPQC+Q+I L
Sbjct  886   GSAQQQIPYTVTESRPQVRQLQDGA--TVSPVLWASVVESRSYHYERIISDPQCNQDITL  943

Query  971   RCNEYGHPLHSVTINYPRRDKARISPYS-WLAKEHWDSHFDEQQQQLRITESQQSYHHEI  1029
               + +G+PL  V+++YPRR+K+  +PY+  L+     S +D+QQQ LR+T  Q S HH I
Sbjct  944   SSDLFGQPLKQVSVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLI  1003

Query  1030  SDKFYVLGLPAGQRSDVLTYPDNFVPTAGIHWEELQQPEGLLGTKAERTFTAQQQVFYTS  1089
             ++ + VLGLP G RSD +TY  + VP  G++ E L   ++L++    R +  QQ+ FYT 
Sbjct  1004  GNELRVLGLPDGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTD  1063

Query  1090  D---------TIPGLVAYSQQAEFDDQTLVALDELLPANERKQQLIKAGYQIAPRLFART  1140
             +         T  +L+A+++ A + +  L A+D  + ++E    L +AGYQ  P LF+RT
Sbjct  1064  GKNQTPLKTPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRT  1123

Query  1141  GETDIWVAQSGFTDYGDASRFYRPISQRSTQLVGKTILEWDATCCAVSDIILADYSITHA  1200
             GE  +WVA+ G+TDYG  ++F RP++QR++ L GK  L WD+  C +++   A      A
Sbjct  1124  GENKVWVARQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSA  1183

Query  1201  EYDYRFITPYLLIDINDNQHYIELDALGRVTSSRFAGTEIDPQTNKVIETGFPSIAEQPF  1260
             +YD RF+TP  L DINDN H I LDALGR  + RF G E +      + TG++S  E+PF
Sbjct  1184  NYDWRFLTPTQLTDINDNVHLITLDALGRPVTQRFWGIESG------VATGYSSSEEKPF  1237

Query  1261  SAPNSVDKALSLENTRIPVAQFSVYQPQSWMISLQLDDIEIWIRANNITPEYLFQNHILI  1320
             S+PN +D A++L    +PVAQ  VY P+SWM  +  + ++   + ++   E L +++I+ 
Sbjct  1238  SPPNDIDTAINLTGP-LPVAQCLVYAPDSWMPLFSQETFNTLTQEEQ---ETLRDSRIIT  1293

Query  1321  DNYYLCPLALRRWGRQNNLLITEGVGLTLKNPMRQPPHILTVVVDNYFSASEPQQHQQTL  1380
             ++  +C+L+ RRW + ++  I+  +   L N++  PPH LT+  D Y   SE Q +QQ +
Sbjct  1294  EDWRICALTRRRWLQSQK--ISTPLVKLLTNSIGLPPHNLTLTTDRYDRDSEQQIRQQ-V  1350

Query  1381  AFSDGFGRVLLSARRVETGPSYSFDPENGLLVDDKGNLVQLEVDQRWAVSGRTEYDNKGL  1440
             AFSDGFGR+L ++ R E+G +   + + +L+          +   RWAV+GRTEYDNKG 
Sbjct  1351  AFSDGFGRLLQASVRHEAGEAWQRNQDGSLVTKVE------NTKTRWAVTGRTEYDNKGQ  1404

Query  1441  PRRRYQPYFFDNWIWLYIANNRTLKEAYADTHIYDPLGREIKVITAKGYLRRTHYFPWFV  1500
               R YQPYF+++W   Y++++ + KEAYADTHIYDP+GREI+VITAKG LR+++YFPWF 
Sbjct  1405  TIRTYQPYFLNDWR--YVSDDSARKEAYADTHIYDPIGREIRVITAKGWLRQSQYFPWFT  1462

Query  1501  ISEDENDTASE  1511
             +SEDENDTA++
Sbjct  1463  VSEDENDTAAD  1473

25) YPN_3493 in NC_008149


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1140 bits (4322),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 727/1511 (49%), Positives = 1043/1511 (70%), Gaps = 61/1511 (4%)

Query  3     NSKQQVAVAPLSLPKGGGAITGMGDSLGPIGPSGMATLTLPLPISAGRGYAPSLTLSYSS  62
             ++ Q  +V+ LSLPKGGGAITGMG++L P GP GMA+L+LPLPISAGRGYAPSLTL+Y+S
Sbjct  2     QNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNS  61

Query  63    GSGNGPFGLGWQLGTMAIRRRTNAQVPRYDEYDEFLAPNGEVMVVAADPQGSIE-RTEQS  121
             G+GN+PFGLGW+ G MAIRRRT++ VP YDE D FL+P+GEV+VVA +  G  + R+E S
Sbjct  62    GTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESS  121

Query  122   LNG----EQFSVIRYLPRIEGNFHRIEYWRPRTNNSQAPFWLVHSSDGQKHCLGYSAAAR  177
             L+G      F+V  Y +R+E++F+R+EYW+P+T  + + FWL+ S+DGQ H LG ++ AR
Sbjct  122   LQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGA-TDFWLIYSPDGQVHLLGKNPQAR  180

Query  178   IADPLHPEHIAEWLLEESVSLSGEHIGYQYQAEDEQGIDEPSIYKAEKQNHPAASAQRYL  237
             I++PL+ ++ A+WLLE S+S  +E+I YQY+AEDE G +       E   HP+A+ QRYL
Sbjct  181   ISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCE-----TDELAAHPSATVQRYL  235

Query  238   KRVVYGNRQAAYELYCL--TQQPAPTSWLFSLIFDHGEYSNIAEQVPVIIKGKSWNFRQD  295
             + V YGN  A+ +++     ++P  ++W+F L+FD GE  N   ++P++    +W  R+D
Sbjct  236   QTVHYGNLTAS-DVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRKD  294

Query  296   AFSHFNYGFEVRTRRLCQQVLMYHNLSALKGDE-PDAQATLVSRLRLHYQHDAYATQLVG  354
              FS+++YGFE+RTRRLC+Q+LM+H L +L G+   D +++LVSRL L+Y+++A  + LV+
Sbjct  295   RFSRYEYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVS  354

Query  355   CQQLAHEPDGTKRSLPPLEFDYQDFSTRDALGWQPLTDWAEFNY--QYQMVDLNGEGMPG  412
              ++++HE + T  +LPPLE+ YQ F   ++  WQ++   A+FN   + Q++DL+GEG+PG
Sbjct  355   VRRVGHEDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPG  414

Query  413   MLYQDSGHWIYRPPVRQPGTA-DGITFGAAQRLPSLPAMRENAMLMDINGDGKLDWVISQ  471
             +LYQD   W YR++ RQ+G   +++T G  Q LP  PA+++NA LMDINGDG+LDWVI+ 
Sbjct  415   ILYQDRNGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITG  474

Query  472   PGLAGYFSRDPDLSRDPDLSWTQFIPLSTLPAEYFHPQAQLVDLAGSGLSDLALVGPKSV  531
             PGL GY S++PD S      WT+F PL +LP EY HP+AQL DL G+GLSDL L+GPKSV
Sbjct  475   PGLRGYHSQHPDGS------WTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSV  528

Query  532   RVYTNLCDSFAAATQVAQDDDITLPLPGVHFTELVAFSDVMGSGQQHLVRIRHNSVTCWP  591
             R+Y N  D+F+ + +V Q +DITLPLPG +   LVAFSDV+GSGQ HLV +    VTCWP
Sbjct  529   RLYVNNRDGFTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWP  588

Query  592   NLGHGRFGHPLSLPGFNQPVEQFNPLAIYLADIDGSGTIDLIYATTSQLLIYRNQSGNRF  651
             NLGHGRFG+P+ LPGF+Q+   FNP  + LAD+DGSG  DLIY  + +L I+ N+SGN F
Sbjct  589   NLGHGRFGQPIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGF  648

Query  652   AEPLAIALPTGIRFDNSCQLSLADIQGLGVASIMLSVPHPTTQHWRYDFVASKPYLLCTT  711
             A P+++++P G+RFD++CQL +AD+QGLGV S++LSVPH + +HWR D+  +KP LL  T
Sbjct  649   AKPFTLSFPDGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSET  708

Query  712   NNNMGAESQLLYRSSVQFWLDEKAQAAKQGRSLACQLPFPIHLLAQTTQFDEITGNSLSQ  771
             NNNMGA+  L YRSSVQFWLDEKA A   G++  C LPFP+H L QT   DEI+GN L  
Sbjct  709   NNNMGANHTLHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVT  768

Query  772   TARYFHGFYDGVQREFSGFGRVDTLDTDTSAQGSAAERTAPTKSSRWFHTGRAGNETLWQ  831
             T RY HG  DG +REF GFG V+  D++  AQG+A+ERT+P+ +  W+ TG ++ +    
Sbjct  769   TLRYAHGAWDGREREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPAVDNALS  828

Query  832   SEYWQGDDQAYSLLPTRLTKFINNTQGDEL-LSELDDNQTFWLHRALKGSLLRSELYGLD  890
             + YW+GD QA++ +  R   F    +G ++ L+  DD++ +WL+RALKG  LRSELYGLD
Sbjct  829   AGYWRGDKQAFAGFTPR---FTLWKEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLD  885

Query  891   DSELATQPYSVNSSRYQVRQIQSSADGISSPVALPMVLEQLSYHYERIAQDPQCSQQIVL  950
             +S     PY+V  SR QVRQ+Q +A    SPV  + V+E  SYHYERI  DPQC+Q+I L
Sbjct  886   GSAQQQIPYTVTESRPQVRQLQDGA--TVSPVLWASVVESRSYHYERIISDPQCNQDITL  943

Query  951   RCNEYGHPLHSVTINYPRRDKARISPYS-WLAKEHWDSHFDEQQQQLRITESQQSYHHEI  1009
               + +G+PL  V+++YPRR+K+  +PY+  L+     S +D+QQQ LR+T  Q S HH I
Sbjct  944   SSDLFGQPLKQVSVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLI  1003

Query  1010  SDKFYVLGLPAGQRSDVLTYPDNFVPTAGIHWEELQQPEGLLGTKAERTFTAQQQVFYTS  1069
             ++ + VLGLP G RSD +TY  + VP  G++ E L   ++L++    R +  QQ+ FYT 
Sbjct  1004  GNELRVLGLPDGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTD  1063

Query  1070  D---------TIPGLVAYSQQAEFDDQTLVALDELLPANERKQQLIKAGYQIAPRLFART  1120
             +         T  +L+A+++ A + +  L A+D  + ++E    L +AGYQ  P LF+RT
Sbjct  1064  GKNQTPLKTPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRT  1123

Query  1121  GETDIWVAQSGFTDYGDASRFYRPISQRSTQLVGKTILEWDATCCAVSDIILADYSITHA  1180
             GE  +WVA+ G+TDYG  ++F RP++QR++ L GK  L WD+  C +++   A      A
Sbjct  1124  GENKVWVARQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSA  1183

Query  1181  EYDYRFITPYLLIDINDNQHYIELDALGRVTSSRFAGTEIDPQTNKVIETGFPSIAEQPF  1240
             +YD RF+TP  L DINDN H I LDALGR  + RF G E +      + TG++S  E+PF
Sbjct  1184  NYDWRFLTPTQLTDINDNVHLITLDALGRPVTQRFWGIESG------VATGYSSSEEKPF  1237

Query  1241  SAPNSVDKALSLENTRIPVAQFSVYQPQSWMISLQLDDIEIWIRANNITPEYLFQNHILI  1300
             S+PN +D A++L    +PVAQ  VY P+SWM  +  + ++   + ++   E L +++I+ 
Sbjct  1238  SPPNDIDTAINLTGP-LPVAQCLVYAPDSWMPLFSQETFNTLTQEEQ---ETLRDSRIIT  1293

Query  1301  DNYYLCPLALRRWGRQNNLLITEGVGLTLKNPMRQPPHILTVVVDNYFSASEPQQHQQTL  1360
             ++  +C+L+ RRW + ++  I+  +   L N++  PPH LT+  D Y   SE Q +QQ +
Sbjct  1294  EDWRICALTRRRWLQSQK--ISTPLVKLLTNSIGLPPHNLTLTTDRYDRDSEQQIRQQ-V  1350

Query  1361  AFSDGFGRVLLSARRVETGPSYSFDPENGLLVDDKGNLVQLEVDQRWAVSGRTEYDNKGL  1420
             AFSDGFGR+L ++ R E+G +   + + +L+          +   RWAV+GRTEYDNKG 
Sbjct  1351  AFSDGFGRLLQASVRHEAGEAWQRNQDGSLVTKVE------NTKTRWAVTGRTEYDNKGQ  1404

Query  1421  PRRRYQPYFFDNWIWLYIANNRTLKEAYADTHIYDPLGREIKVITAKGYLRRTHYFPWFV  1480
               R YQPYF+++W   Y++++ + KEAYADTHIYDP+GREI+VITAKG LR+++YFPWF 
Sbjct  1405  TIRTYQPYFLNDWR--YVSDDSARKEAYADTHIYDPIGREIRVITAKGWLRQSQYFPWFT  1462

Query  1481  ISEDENDTASE  1491
             +SEDENDTA++
Sbjct  1463  VSEDENDTAAD  1473

26) YPDSF_0285 in NC_009381


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1140 bits (4322),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 727/1511 (49%), Positives = 1043/1511 (70%), Gaps = 61/1511 (4%)

Query  3     NSKQQVAVAPLSLPKGGGAITGMGDSLGPIGPSGMATLTLPLPISAGRGYAPSLTLSYSS  62
             ++ Q  +V+ LSLPKGGGAITGMG++L P GP GMA+L+LPLPISAGRGYAPSLTL+Y+S
Sbjct  2     QNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNS  61

Query  63    GSGNGPFGLGWQLGTMAIRRRTNAQVPRYDEYDEFLAPNGEVMVVAADPQGSIE-RTEQS  121
             G+GN+PFGLGW+ G MAIRRRT++ VP YDE D FL+P+GEV+VVA +  G  + R+E S
Sbjct  62    GTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESS  121

Query  122   LNG----EQFSVIRYLPRIEGNFHRIEYWRPRTNNSQAPFWLVHSSDGQKHCLGYSAAAR  177
             L+G      F+V  Y +R+E++F+R+EYW+P+T  + + FWL+ S+DGQ H LG ++ AR
Sbjct  122   LQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGA-TDFWLIYSPDGQVHLLGKNPQAR  180

Query  178   IADPLHPEHIAEWLLEESVSLSGEHIGYQYQAEDEQGIDEPSIYKAEKQNHPAASAQRYL  237
             I++PL+ ++ A+WLLE S+S  +E+I YQY+AEDE G +       E   HP+A+ QRYL
Sbjct  181   ISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCE-----TDELAAHPSATVQRYL  235

Query  238   KRVVYGNRQAAYELYCL--TQQPAPTSWLFSLIFDHGEYSNIAEQVPVIIKGKSWNFRQD  295
             + V YGN  A+ +++     ++P  ++W+F L+FD GE  N   ++P++    +W  R+D
Sbjct  236   QTVHYGNLTAS-DVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRKD  294

Query  296   AFSHFNYGFEVRTRRLCQQVLMYHNLSALKGDE-PDAQATLVSRLRLHYQHDAYATQLVG  354
              FS+++YGFE+RTRRLC+Q+LM+H L +L G+   D +++LVSRL L+Y+++A  + LV+
Sbjct  295   RFSRYEYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVS  354

Query  355   CQQLAHEPDGTKRSLPPLEFDYQDFSTRDALGWQPLTDWAEFNY--QYQMVDLNGEGMPG  412
              ++++HE + T  +LPPLE+ YQ F   ++  WQ++   A+FN   + Q++DL+GEG+PG
Sbjct  355   VRRVGHEDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPG  414

Query  413   MLYQDSGHWIYRPPVRQPGTA-DGITFGAAQRLPSLPAMRENAMLMDINGDGKLDWVISQ  471
             +LYQD   W YR++ RQ+G   +++T G  Q LP  PA+++NA LMDINGDG+LDWVI+ 
Sbjct  415   ILYQDRNGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITG  474

Query  472   PGLAGYFSRDPDLSRDPDLSWTQFIPLSTLPAEYFHPQAQLVDLAGSGLSDLALVGPKSV  531
             PGL GY S++PD S      WT+F PL +LP EY HP+AQL DL G+GLSDL L+GPKSV
Sbjct  475   PGLRGYHSQHPDGS------WTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSV  528

Query  532   RVYTNLCDSFAAATQVAQDDDITLPLPGVHFTELVAFSDVMGSGQQHLVRIRHNSVTCWP  591
             R+Y N  D+F+ + +V Q +DITLPLPG +   LVAFSDV+GSGQ HLV +    VTCWP
Sbjct  529   RLYVNNRDGFTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWP  588

Query  592   NLGHGRFGHPLSLPGFNQPVEQFNPLAIYLADIDGSGTIDLIYATTSQLLIYRNQSGNRF  651
             NLGHGRFG+P+ LPGF+Q+   FNP  + LAD+DGSG  DLIY  + +L I+ N+SGN F
Sbjct  589   NLGHGRFGQPIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGF  648

Query  652   AEPLAIALPTGIRFDNSCQLSLADIQGLGVASIMLSVPHPTTQHWRYDFVASKPYLLCTT  711
             A P+++++P G+RFD++CQL +AD+QGLGV S++LSVPH + +HWR D+  +KP LL  T
Sbjct  649   AKPFTLSFPDGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSET  708

Query  712   NNNMGAESQLLYRSSVQFWLDEKAQAAKQGRSLACQLPFPIHLLAQTTQFDEITGNSLSQ  771
             NNNMGA+  L YRSSVQFWLDEKA A   G++  C LPFP+H L QT   DEI+GN L  
Sbjct  709   NNNMGANHTLHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVT  768

Query  772   TARYFHGFYDGVQREFSGFGRVDTLDTDTSAQGSAAERTAPTKSSRWFHTGRAGNETLWQ  831
             T RY HG  DG +REF GFG V+  D++  AQG+A+ERT+P+ +  W+ TG ++ +    
Sbjct  769   TLRYAHGAWDGREREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPAVDNALS  828

Query  832   SEYWQGDDQAYSLLPTRLTKFINNTQGDEL-LSELDDNQTFWLHRALKGSLLRSELYGLD  890
             + YW+GD QA++ +  R   F    +G ++ L+  DD++ +WL+RALKG  LRSELYGLD
Sbjct  829   AGYWRGDKQAFAGFTPR---FTLWKEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLD  885

Query  891   DSELATQPYSVNSSRYQVRQIQSSADGISSPVALPMVLEQLSYHYERIAQDPQCSQQIVL  950
             +S     PY+V  SR QVRQ+Q +A    SPV  + V+E  SYHYERI  DPQC+Q+I L
Sbjct  886   GSAQQQIPYTVTESRPQVRQLQDGA--TVSPVLWASVVESRSYHYERIISDPQCNQDITL  943

Query  951   RCNEYGHPLHSVTINYPRRDKARISPYS-WLAKEHWDSHFDEQQQQLRITESQQSYHHEI  1009
               + +G+PL  V+++YPRR+K+  +PY+  L+     S +D+QQQ LR+T  Q S HH I
Sbjct  944   SSDLFGQPLKQVSVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLI  1003

Query  1010  SDKFYVLGLPAGQRSDVLTYPDNFVPTAGIHWEELQQPEGLLGTKAERTFTAQQQVFYTS  1069
             ++ + VLGLP G RSD +TY  + VP  G++ E L   ++L++    R +  QQ+ FYT 
Sbjct  1004  GNELRVLGLPDGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTD  1063

Query  1070  D---------TIPGLVAYSQQAEFDDQTLVALDELLPANERKQQLIKAGYQIAPRLFART  1120
             +         T  +L+A+++ A + +  L A+D  + ++E    L +AGYQ  P LF+RT
Sbjct  1064  GKNQTPLKTPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRT  1123

Query  1121  GETDIWVAQSGFTDYGDASRFYRPISQRSTQLVGKTILEWDATCCAVSDIILADYSITHA  1180
             GE  +WVA+ G+TDYG  ++F RP++QR++ L GK  L WD+  C +++   A      A
Sbjct  1124  GENKVWVARQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSA  1183

Query  1181  EYDYRFITPYLLIDINDNQHYIELDALGRVTSSRFAGTEIDPQTNKVIETGFPSIAEQPF  1240
             +YD RF+TP  L DINDN H I LDALGR  + RF G E +      + TG++S  E+PF
Sbjct  1184  NYDWRFLTPTQLTDINDNVHLITLDALGRPVTQRFWGIESG------VATGYSSSEEKPF  1237

Query  1241  SAPNSVDKALSLENTRIPVAQFSVYQPQSWMISLQLDDIEIWIRANNITPEYLFQNHILI  1300
             S+PN +D A++L    +PVAQ  VY P+SWM  +  + ++   + ++   E L +++I+ 
Sbjct  1238  SPPNDIDTAINLTGP-LPVAQCLVYAPDSWMPLFSQETFNTLTQEEQ---ETLRDSRIIT  1293

Query  1301  DNYYLCPLALRRWGRQNNLLITEGVGLTLKNPMRQPPHILTVVVDNYFSASEPQQHQQTL  1360
             ++  +C+L+ RRW + ++  I+  +   L N++  PPH LT+  D Y   SE Q +QQ +
Sbjct  1294  EDWRICALTRRRWLQSQK--ISTPLVKLLTNSIGLPPHNLTLTTDRYDRDSEQQIRQQ-V  1350

Query  1361  AFSDGFGRVLLSARRVETGPSYSFDPENGLLVDDKGNLVQLEVDQRWAVSGRTEYDNKGL  1420
             AFSDGFGR+L ++ R E+G +   + + +L+          +   RWAV+GRTEYDNKG 
Sbjct  1351  AFSDGFGRLLQASVRHEAGEAWQRNQDGSLVTKVE------NTKTRWAVTGRTEYDNKGQ  1404

Query  1421  PRRRYQPYFFDNWIWLYIANNRTLKEAYADTHIYDPLGREIKVITAKGYLRRTHYFPWFV  1480
               R YQPYF+++W   Y++++ + KEAYADTHIYDP+GREI+VITAKG LR+++YFPWF 
Sbjct  1405  TIRTYQPYFLNDWR--YVSDDSARKEAYADTHIYDPIGREIRVITAKGWLRQSQYFPWFT  1462

Query  1481  ISEDENDTASE  1491
             +SEDENDTA++
Sbjct  1463  VSEDENDTAAD  1473

27) YPZ3_3162 in NC_014029


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1140 bits (4322),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 727/1511 (49%), Positives = 1043/1511 (70%), Gaps = 61/1511 (4%)

Query  3     NSKQQVAVAPLSLPKGGGAITGMGDSLGPIGPSGMATLTLPLPISAGRGYAPSLTLSYSS  62
             ++ Q  +V+ LSLPKGGGAITGMG++L P GP GMA+L+LPLPISAGRGYAPSLTL+Y+S
Sbjct  2     QNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNS  61

Query  63    GSGNGPFGLGWQLGTMAIRRRTNAQVPRYDEYDEFLAPNGEVMVVAADPQGSIE-RTEQS  121
             G+GN+PFGLGW+ G MAIRRRT++ VP YDE D FL+P+GEV+VVA +  G  + R+E S
Sbjct  62    GTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESS  121

Query  122   LNG----EQFSVIRYLPRIEGNFHRIEYWRPRTNNSQAPFWLVHSSDGQKHCLGYSAAAR  177
             L+G      F+V  Y +R+E++F+R+EYW+P+T  + + FWL+ S+DGQ H LG ++ AR
Sbjct  122   LQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGA-TDFWLIYSPDGQVHLLGKNPQAR  180

Query  178   IADPLHPEHIAEWLLEESVSLSGEHIGYQYQAEDEQGIDEPSIYKAEKQNHPAASAQRYL  237
             I++PL+ ++ A+WLLE S+S  +E+I YQY+AEDE G +       E   HP+A+ QRYL
Sbjct  181   ISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCE-----TDELAAHPSATVQRYL  235

Query  238   KRVVYGNRQAAYELYCL--TQQPAPTSWLFSLIFDHGEYSNIAEQVPVIIKGKSWNFRQD  295
             + V YGN  A+ +++     ++P  ++W+F L+FD GE  N   ++P++    +W  R+D
Sbjct  236   QTVHYGNLTAS-DVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRKD  294

Query  296   AFSHFNYGFEVRTRRLCQQVLMYHNLSALKGDE-PDAQATLVSRLRLHYQHDAYATQLVG  354
              FS+++YGFE+RTRRLC+Q+LM+H L +L G+   D +++LVSRL L+Y+++A  + LV+
Sbjct  295   RFSRYEYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVS  354

Query  355   CQQLAHEPDGTKRSLPPLEFDYQDFSTRDALGWQPLTDWAEFNY--QYQMVDLNGEGMPG  412
              ++++HE + T  +LPPLE+ YQ F   ++  WQ++   A+FN   + Q++DL+GEG+PG
Sbjct  355   VRRVGHEDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPG  414

Query  413   MLYQDSGHWIYRPPVRQPGTA-DGITFGAAQRLPSLPAMRENAMLMDINGDGKLDWVISQ  471
             +LYQD   W YR++ RQ+G   +++T G  Q LP  PA+++NA LMDINGDG+LDWVI+ 
Sbjct  415   ILYQDRNGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITG  474

Query  472   PGLAGYFSRDPDLSRDPDLSWTQFIPLSTLPAEYFHPQAQLVDLAGSGLSDLALVGPKSV  531
             PGL GY S++PD S      WT+F PL +LP EY HP+AQL DL G+GLSDL L+GPKSV
Sbjct  475   PGLRGYHSQHPDGS------WTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSV  528

Query  532   RVYTNLCDSFAAATQVAQDDDITLPLPGVHFTELVAFSDVMGSGQQHLVRIRHNSVTCWP  591
             R+Y N  D+F+ + +V Q +DITLPLPG +   LVAFSDV+GSGQ HLV +    VTCWP
Sbjct  529   RLYVNNRDGFTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWP  588

Query  592   NLGHGRFGHPLSLPGFNQPVEQFNPLAIYLADIDGSGTIDLIYATTSQLLIYRNQSGNRF  651
             NLGHGRFG+P+ LPGF+Q+   FNP  + LAD+DGSG  DLIY  + +L I+ N+SGN F
Sbjct  589   NLGHGRFGQPIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGF  648

Query  652   AEPLAIALPTGIRFDNSCQLSLADIQGLGVASIMLSVPHPTTQHWRYDFVASKPYLLCTT  711
             A P+++++P G+RFD++CQL +AD+QGLGV S++LSVPH + +HWR D+  +KP LL  T
Sbjct  649   AKPFTLSFPDGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSET  708

Query  712   NNNMGAESQLLYRSSVQFWLDEKAQAAKQGRSLACQLPFPIHLLAQTTQFDEITGNSLSQ  771
             NNNMGA+  L YRSSVQFWLDEKA A   G++  C LPFP+H L QT   DEI+GN L  
Sbjct  709   NNNMGANHTLHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVT  768

Query  772   TARYFHGFYDGVQREFSGFGRVDTLDTDTSAQGSAAERTAPTKSSRWFHTGRAGNETLWQ  831
             T RY HG  DG +REF GFG V+  D++  AQG+A+ERT+P+ +  W+ TG ++ +    
Sbjct  769   TLRYAHGAWDGREREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPAVDNALS  828

Query  832   SEYWQGDDQAYSLLPTRLTKFINNTQGDEL-LSELDDNQTFWLHRALKGSLLRSELYGLD  890
             + YW+GD QA++ +  R   F    +G ++ L+  DD++ +WL+RALKG  LRSELYGLD
Sbjct  829   AGYWRGDKQAFAGFTPR---FTLWKEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLD  885

Query  891   DSELATQPYSVNSSRYQVRQIQSSADGISSPVALPMVLEQLSYHYERIAQDPQCSQQIVL  950
             +S     PY+V  SR QVRQ+Q +A    SPV  + V+E  SYHYERI  DPQC+Q+I L
Sbjct  886   GSAQQQIPYTVTESRPQVRQLQDGA--TVSPVLWASVVESRSYHYERIISDPQCNQDITL  943

Query  951   RCNEYGHPLHSVTINYPRRDKARISPYS-WLAKEHWDSHFDEQQQQLRITESQQSYHHEI  1009
               + +G+PL  V+++YPRR+K+  +PY+  L+     S +D+QQQ LR+T  Q S HH I
Sbjct  944   SSDLFGQPLKQVSVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLI  1003

Query  1010  SDKFYVLGLPAGQRSDVLTYPDNFVPTAGIHWEELQQPEGLLGTKAERTFTAQQQVFYTS  1069
             ++ + VLGLP G RSD +TY  + VP  G++ E L   ++L++    R +  QQ+ FYT 
Sbjct  1004  GNELRVLGLPDGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTD  1063

Query  1070  D---------TIPGLVAYSQQAEFDDQTLVALDELLPANERKQQLIKAGYQIAPRLFART  1120
             +         T  +L+A+++ A + +  L A+D  + ++E    L +AGYQ  P LF+RT
Sbjct  1064  GKNQTPLKTPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRT  1123

Query  1121  GETDIWVAQSGFTDYGDASRFYRPISQRSTQLVGKTILEWDATCCAVSDIILADYSITHA  1180
             GE  +WVA+ G+TDYG  ++F RP++QR++ L GK  L WD+  C +++   A      A
Sbjct  1124  GENKVWVARQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSA  1183

Query  1181  EYDYRFITPYLLIDINDNQHYIELDALGRVTSSRFAGTEIDPQTNKVIETGFPSIAEQPF  1240
             +YD RF+TP  L DINDN H I LDALGR  + RF G E +      + TG++S  E+PF
Sbjct  1184  NYDWRFLTPTQLTDINDNVHLITLDALGRPVTQRFWGIESG------VATGYSSSEEKPF  1237

Query  1241  SAPNSVDKALSLENTRIPVAQFSVYQPQSWMISLQLDDIEIWIRANNITPEYLFQNHILI  1300
             S+PN +D A++L    +PVAQ  VY P+SWM  +  + ++   + ++   E L +++I+ 
Sbjct  1238  SPPNDIDTAINLTGP-LPVAQCLVYAPDSWMPLFSQETFNTLTQEEQ---ETLRDSRIIT  1293

Query  1301  DNYYLCPLALRRWGRQNNLLITEGVGLTLKNPMRQPPHILTVVVDNYFSASEPQQHQQTL  1360
             ++  +C+L+ RRW + ++  I+  +   L N++  PPH LT+  D Y   SE Q +QQ +
Sbjct  1294  EDWRICALTRRRWLQSQK--ISTPLVKLLTNSIGLPPHNLTLTTDRYDRDSEQQIRQQ-V  1350

Query  1361  AFSDGFGRVLLSARRVETGPSYSFDPENGLLVDDKGNLVQLEVDQRWAVSGRTEYDNKGL  1420
             AFSDGFGR+L ++ R E+G +   + + +L+          +   RWAV+GRTEYDNKG 
Sbjct  1351  AFSDGFGRLLQASVRHEAGEAWQRNQDGSLVTKVE------NTKTRWAVTGRTEYDNKGQ  1404

Query  1421  PRRRYQPYFFDNWIWLYIANNRTLKEAYADTHIYDPLGREIKVITAKGYLRRTHYFPWFV  1480
               R YQPYF+++W   Y++++ + KEAYADTHIYDP+GREI+VITAKG LR+++YFPWF 
Sbjct  1405  TIRTYQPYFLNDWR--YVSDDSARKEAYADTHIYDPIGREIRVITAKGWLRQSQYFPWFT  1462

Query  1481  ISEDENDTASE  1491
             +SEDENDTA++
Sbjct  1463  VSEDENDTAAD  1473

28) EJP617_14820 in NC_017445


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1113 bits (4221),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 676/1276 (53%), Positives = 936/1276 (74%), Gaps = 19/1276 (1%)

Query  1     MQNSDSLILEAPSLPKGGGAVSGLKgdmaaagpdgaaTLSVPLPVSAGRGYAPALALSYH  60
             MQNS+++ +   SLPKGGGA++G+   +++AGPDG A+LS+PLP+SAGRGYAP+L+L+Y+
Sbjct  1     MQNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYN  60

Query  61    SRGGNGPFGMGWDVNLSAIRRRTNKGIPTYGADDEFTGPDGEVLVPLLTADGTPETRSAS  120
             S  GN+PFG+GWD  + AIRRRT+ G+P Y+  D F GP+GEVLV  L   G ++ RS S
Sbjct  61    SGTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSES  120

Query  121   ALLEVDAGGNYHVRAYRSRTESDFSRLEYWVADSDSAEAFWLLYRPDGQLFLLGRNAQAR  180
             +L  ++ G+ + V  YRSR ES+F+RLEYW +++ +A  FWL+Y PDGQ+ LLG+N+QAR
Sbjct  121   SLQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGATDFWLIYSPDGQVHLLGKNPQAR  180

Query  181   ISNPHHARQTAVWLIESSVSVSGEQIYYQYRAEDDTDCADAEKAAHGAATAQRYLMAVWY  240
             ISNP +  QTA WL+E+S+S  +EQIYYQYRAED+++C   E AAH +AT QRYL +V Y
Sbjct  181   ISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCETDELAAHPSATVQRYLQTVHY  240

Query  241   GNRTASRTLPAFTSA-PSAEDWLFTLVLDYGERDTDPAQAPDWLPPGEGSWPCRPDRFSS  299
             GN TAS  +P++ +  P   +W+F LV+DYGER    ++ P  L  + G+W CR DRFS 
Sbjct  241   GNLTASDVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMP--LFKATGNWLCRKDRFSR  298

Query  300   WHYGFELRTRRLCRQVLMYHAVTALAGEEEPGDKPQLVARLCLDYQQTPSVTMLKSVRQN  359
              +YGFELRTRRLCRQ+LM+H + +L+G+   +D P LV+RL LDY++ + V+ L SVR+ 
Sbjct  299   YEYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVSVRRV  358

Query  360   AYEADGRVLSLPPLTFGWHTFTPPKTAAWQQREDMGNLNALQPYQLVDLNGEGLAGILYQ  419
             + E +  V +LPPL ++ + F P +TA WQ  + ++N+N++Q  QL+DL+GEG++GILYQ
Sbjct  359   GHEDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPGILYQ  418

Query  420   DDGGWWYRAPVRQTGGSADEVTWDKAAPLPIMPalhaggalldlngdgYLEWLVTAPGLA  479
             D  GWWYR++ RQ+G   + VTW+K   LPI PA++  ++L+D+NGDG L+W++T+PGL 
Sbjct  419   DRNGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITGPGLR  478

Query  480   GHYGRTADRQWRNFTPLSALPVEYGHPRARLADLTGSGLSDLVLIGPTSVRLYSGTGEGW  539
             G  ++ +D  W  FTPL ALP+EY+HPRA+LADL G+GLSDLVLIGP SVRLY    +G 
Sbjct  479   GYHSQHPDGSWTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSVRLYVNNRDGF  538

Query  540   QKALTVMQADSVTLPVSPTKDDSMLIAFSDMDGSGQQHLVQVSASGVRYWPNLGHGRFGQ  599
               +  V+Q++ +TLP+ P  D   L+AFSD+ GSGQ HLV+VSA+ V  WPNLGHGRFGQ
Sbjct  539   TEGRDVVQSGDITLPL-PGADARKLVAFSDVLGSGQAHLVEVSATQVTCWPNLGHGRFGQ  597

Query  600   PLDVPGFSQPAARFNPQQLFLADIDGSGTTDLIYALGDSLLIYLNQSGNafaapfslplp  659
             P+ +PGFSQ+AA FNP+++ LAD+DGSG +DLIY  +D L I+ N+SGN+FA PF+L++P
Sbjct  598   PIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGFAKPFTLSFP  657

Query  660   aGVRYARTCSLQLADIQGQGVASLILTSPHPTPRHWVCHLSEQKPWLLNAMDNHMGATHR  719
              G+R+  TC LQ+AD+QG GV SLIL+ PH +P+HW C+L++ KPWLL+  +N+MGA H 
Sbjct  658   DGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSETNNNMGANHT  717

Query  720   LYYRSSAQFWLDEKAEAAQAGKPQPACYLPFALHTVQRTEVTDDITGNRLVSSVRYRHGA  779
             L YRSS QFWLDEKA A  +G+  P CYLPF++HT+ +TE  D+I+GN+LV+++RY HGA
Sbjct  718   LHYRSSVQFWLDEKAAALATGQT-PVCYLPFPVHTLWQTETEDEISGNKLVTTLRYAHGA  776

Query  780   WDGREREFRGFGLVEVSDTDTGTSRGSAAEISMPAITRSWYATGLVQVDDQLPRQYWQGD  839
             WDGREREFRGFG VE +D++   ++G+A+E + PA+T+SWYATGL  VD+ L+  YW+GD
Sbjct  777   WDGREREFRGFGYVEQTDSHQ-LAQGNAPERTPPALTKSWYATGLPAVDNALSAGYWRGD  835

Query  840   SAAFAGFVPRFTIGSGDDEQAYVPDDSTR-FWLKRGVKGMLLRSELYGADDSVLATTPYS  898
               AFAGF PRFT+   + + +  P+D    +WL+R++KG  LRSELYG D+S     PY+
Sbjct  836   KQAFAGFTPRFTLWKEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLDGSAQQQIPYT  895

Query  899   VNETRPQVR-LVEVRGVYPVTWSVSAETRTYIYERVSGDPQCSQQVLLRSDRYGQPLRQV  957
             V E+RPQVR L +   V PV W+   E+R+Y YER+ +DPQC+Q++ L SD +GQPL+QV
Sbjct  896   VTESRPQVRQLQDGATVSPVLWASVVESRSYHYERIISDPQCNQDITLSSDLFGQPLKQV  955

Query  958   SISYPRRRQPTESPYPSTLPLTLFASSYDPQQQELRLVLQQSRWHTLSDSATGVWLAGLS  1017
             S+ YPRR +PT +PYP TLP TLFASSYD QQQ LRL  +QS WH L   +  +++ GL+
Sbjct  956   SVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHL--IGNELRVLGLP  1013

Query  1018  DATRSDIFTYSATSVPAQGLTLEQLSASGNLTGEDRPATFAGQQQVWYLDTQGEAVTAMP  1077
             D+TRSD FTY A  VP +GL LE L A  +L ++D+P  +  QQ+  Y D + ++    P
Sbjct  1014  DGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTDGKNQTPLKTP  1073

Query  1078  AIPPRLAFSESAVLDEPLIASLAQDISAE----TLTQAGYSPSGYLFARRGESGKLLWTV  1133
             +  + +AF+E+AVL E+L++++  +I+++     LTQAGY    YLF+R GE+   +W  
Sbjct  1074  TRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRTGENK--VWVA  1131

Query  1134  RQGYSSYGSAEHFWLPESVRDTLLTGATTVTRDRYDCVITQLRDAAGLTTSAQYDWRFLT  1193
             RQGY+ YG+  +FW P + R++LLTG  T+ +D   CVITQ +DAAGLT SA+YDWRFLT
Sbjct  1132  RQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSANYDWRFLT  1191

Query  1194  PVSVTDANDNRHTVTLDALGRVSVMRFSGTENGSATGYS---DKAIDPPQTAEQALALSA  1250
             P  +TD NDN H +TLDALGR    RF G E+G ATGYS   +K++ PP+  + A+ L++
Sbjct  1192  PTQLTDINDNVHLITLDALGRPVTQRFWGIESGVATGYSSSEEKPFSPPNDIDTAINLTG  1251

Query  1251  PLPVHQLLVYITDSWM  1266
             PLPV Q LVY  DSWM
Sbjct  1252  PLPVAQCLVYAPDSWM  1267


 Score =  166 bits (612),  Expect = 1e-41, Method: Compositional matrix adjust.
 Identities = 93/144 (65%), Positives = 117/144 (82%), Gaps = 6/144 (4%)

Query  1274  PPHVVMLTTDRYDSDPQQQVRQQVVFSDGFGRVLQTSVRQADGDAWQRSAAGALVSASNG  1333
             PPH + LTTDRYD D++QQ+RQQV FSDGFGR+LQ+SVR+  G+AWQR+  G+LV+    
Sbjct  1327  PPHNLTLTTDRYDRDSEQQIRQQVAFSDGFGRLLQASVRHEAGEAWQRNQDGSLVT----  1382

Query  1334  APQLATTTSRWAVSGRTEYDNKGQAIRTYQPFFLNSWQYLSDDSARQDLYADTHYYDPTG  1393
               ++  T +RWAV+GRTEYDNKGQ+IRTYQP+FLN W+Y+SDDSAR++ YADTH YDP G
Sbjct  1383  --KVENTKTRWAVTGRTEYDNKGQTIRTYQPYFLNDWRYVSDDSARKEAYADTHIYDPIG  1440

Query  1394  REWQVKTAKCWLRRSLFTPWFVVS  1417
             RE +V TAK WLR+S + PWF VS
Sbjct  1441  REIRVITAKGWLRQSQYFPWFTVS  1464

29) vsdC in NC_017390


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1100 bits (4171),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 676/1276 (53%), Positives = 944/1276 (74%), Gaps = 19/1276 (1%)

Query  1     MQNSDSLALKAPSLPKGGGAVSGLKgdvaaagpdgaaTLSVPLPVSRGRGYAPALALSYH  60
             MQNS+++++   SLPKGGGA++G+   +++AGPDG A+LS+PLP+S GRGYAP+L+L+Y+
Sbjct  1     MQNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYN  60

Query  61    SRGGNGPFGMGWDVNLSAIRRRTNKGIPTYGPNDEFTGPDGEVLVPLLTADGTPETRSAS  120
             S  GN+PFG+GWD  + AIRRRT+ G+P Y+  D F GP+GEVLV  L   G ++ RS S
Sbjct  61    SGTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSES  120

Query  121   ALLNVDAGGNYHVRAYRSRTESDFSRLEYWVADSNSAEAFWLLYRPDGQLFLLGRNAQAR  180
             +L  ++ G+ + V  YRSR ES+F+RLEYW +++ +A  FWL+Y PDGQ+ LLG+N+QAR
Sbjct  121   SLQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGATDFWLIYSPDGQVHLLGKNPQAR  180

Query  181   ISNPHNARQTAAWLIESSVSVSGEQIYYQYRAEDDTECadaekaahhaataQRYLIAVWY  240
             ISNP N  QTA WL+E+S+S  +EQIYYQYRAED++ C   E AAH +AT QRYL +V Y
Sbjct  181   ISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCETDELAAHPSATVQRYLQTVHY  240

Query  241   GNRTASRTLPAFTSA-PSAEDWLFTLVLDYGERDTDPAQAPDWLPPGKEDWPCRPDRFSS  299
             GN TAS  +P++ +  P   +W+F LV+DYGER    ++ P  L  +  +W CR DRFS 
Sbjct  241   GNLTASDVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMP--LFKATGNWLCRKDRFSR  298

Query  300   WHYGFELRTRRLCRQALMYHAVTALAGEEKPGDQPQLVARLCLDYQQTPSVSMLKSVRQN  359
              +YGFELRTRRLCRQ LM+H + +L+G+ K +D+P LV+RL LDY++ + VS L SVR+ 
Sbjct  299   YEYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVSVRRV  358

Query  360   AYEADGRVLSLPPLTFGWHTFTPPQAATWQQREDMGNLNPLQPYQLVDLNGEGLAGILYQ  419
             + E +  V +LPPL ++ + F P Q+A WQ  + ++N+N +Q  QL+DL+GEG++GILYQ
Sbjct  359   GHEDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPGILYQ  418

Query  420   DDGGWWYRAPVRQTGGSADEVTWDKAAPLPIMPalhaggalldlngdgYLEWLVTAPGLA  479
             D  GWWYR++ RQ+G   + VTW+K   LPI PA++  ++L+D+NGDG L+W++T+PGL 
Sbjct  419   DRNGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITGPGLR  478

Query  480   GHYGRTAERQWRNFTPLTALPVEYGHPRARLVDLTGSGLADLALIGPKSVRLYSGSGEGW  539
             G  ++ ++  W  FTPL ALP+EY+HPRA+L DL G+GL+DL LIGPKSVRLY  + +G 
Sbjct  479   GYHSQHPDGSWTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSVRLYVNNRDGF  538

Query  540   QKVQTVMQADSVTLPLSPTMDASMLIAFSDMAGSGQQHLVQVTASGVRYWPSLGHGRFGQ  599
                + V+Q++ +TLPL P  DA  L+AFSD+ GSGQ HLV+V+A+ V  WP+LGHGRFGQ
Sbjct  539   TEGRDVVQSGDITLPL-PGADARKLVAFSDVLGSGQAHLVEVSATQVTCWPNLGHGRFGQ  597

Query  600   PLDLPGFSQPPDRFNPQQLFLADIDGSGTTDLIYTLGDSLLIYLNQSGNAFAAPFSLPLP  659
             P+ LPGFSQ++  FNP+++ LAD+DGSG +DLIY  +D L I+ N+SGN+FA PF+L++P
Sbjct  598   PIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGFAKPFTLSFP  657

Query  660   EGARYDRTCSLQLADIQGQGVASLILTTPHPTPRHWVCHLSEQKPWLLNAMNNHMGASHS  719
             +G R+D TC LQ+AD+QG GV SLIL+ PH +P+HW C+L++ KPWLL+  NN+MGA+H+
Sbjct  658   DGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSETNNNMGANHT  717

Query  720   LYYRSSAQFWLDEKAEAAQAGKPQPACYLPFALHTVQRTEVTDEITGNRLVSSVRYRHGA  779
             L YRSS QFWLDEKA A  +G+  P CYLPF++HT+ +TE  DEI+GN+LV+++RY HGA
Sbjct  718   LHYRSSVQFWLDEKAAALATGQT-PVCYLPFPVHTLWQTETEDEISGNKLVTTLRYAHGA  776

Query  780   WDGREREFRGFGLVEVSDTDTRASRGSAAEISMPAISRSWYATGLVQVDEQLPRQYWQGD  839
             WDGREREFRGFG VE +D++ + ++G+A+E + PA+++SWYATGL  VD+ L+  YW+GD
Sbjct  777   WDGREREFRGFGYVEQTDSH-QLAQGNAPERTPPALTKSWYATGLPAVDNALSAGYWRGD  835

Query  840   SAAFGGFVPRFTIGSGDDEQAYVPDDSTR-FWLNRGVKGLLLRSELYGADDSVLATTPYS  898
               AF+GF PRFT+   + + +  P+D    +WLNR++KG  LRSELYG D+S     PY+
Sbjct  836   KQAFAGFTPRFTLWKEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLDGSAQQQIPYT  895

Query  899   VSETRPQVR-LVETRGVYPVTWSVSVETRTYLYERFSSDPQCSQQVLLSSDRYGQPLRQV  957
             V+E+RPQVR L +   V PV W+  VE+R+Y YER+ SDPQC+Q++ LSSD +GQPL+QV
Sbjct  896   VTESRPQVRQLQDGATVSPVLWASVVESRSYHYERIISDPQCNQDITLSSDLFGQPLKQV  955

Query  958   NISYPRRSQptkspypptlpptLFASSYDrqqqelrlvlqqsrWHTLSDSAAGVWLAGLS  1017
             ++ YPRR++PT +PYP TLP TLFASSYD QQQ LRL  +QS WH L   +  +++ GL+
Sbjct  956   SVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHL--IGNELRVLGLP  1013

Query  1018  DATRSDIFTYSATSVPAQGLTLEQLSASGNLTGEDRPATFAGQQQVWYLDTQGEAVTATP  1077
             D+TRSD FTY A  VP +GL LE L A  +L ++D+P  +  QQ+  Y D + ++   TP
Sbjct  1014  DGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTDGKNQTPLKTP  1073

Query  1078  AIPPRLAFSESAVLDEPLIASLAQDISAE----TVTQAGYSLSGYLFARRGESGKLLWTV  1133
             +  + +AF+E+AVL E+L++++  +I+++     +TQAGY    YLF+R GE+   +W  
Sbjct  1074  TRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRTGENK--VWVA  1131

Query  1134  RQGYSTYGSAEHFWLPESTRDTLLTGAITVTRDRYNCVITQLRDAAGLTTSAQYDWRFLT  1193
             RQGY+ YG+  +FW P + R++LLTG +T+ +D   CVITQ +DAAGLT SA+YDWRFLT
Sbjct  1132  RQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSANYDWRFLT  1191

Query  1194  PVSVTDANDNRHTVTLDALGRVSVMRFSGTENGNATGYSA---NAIDPPQTAEQALALSA  1250
             P  +TD NDN H +TLDALGR    RF G E+G ATGYS+   +++ PP+  + A+ L++
Sbjct  1192  PTQLTDINDNVHLITLDALGRPVTQRFWGIESGVATGYSSSEEKPFSPPNDIDTAINLTG  1251

Query  1251  PLPVHQMLVYITDSWM  1266
             PLPV Q LVY  DSWM
Sbjct  1252  PLPVAQCLVYAPDSWM  1267


 Score = 92.0 bits (330),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 52/83 (63%), Positives = 65/83 (79%), Gaps = 6/83 (7%)

Query  1274  PPHVVVLTTDRYDSDPQQQIRQQVVFSDGFGRVLQTSVRQTDGGAWQRSAAGALVSASNG  1333
             PPH + LTTDRYD D++QQIRQQV FSDGFGR+LQ+SVR+  G AWQR+  G+LV+    
Sbjct  1327  PPHNLTLTTDRYDRDSEQQIRQQVAFSDGFGRLLQASVRHEAGEAWQRNQDGSLVT----  1382

Query  1334  APQLATTTSRWAVSGRTEYDNKG  1356
               ++  T +RWAV+GRTEYDNKG
Sbjct  1383  --KVENTKTRWAVTGRTEYDNKG  1403

30) EpC_03190 in NC_012214


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1100 bits (4171),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 676/1276 (53%), Positives = 944/1276 (74%), Gaps = 19/1276 (1%)

Query  1     MQNSDSLALKAPSLPKGGGAVSGLKgdvaaagpdgaaTLSVPLPVSRGRGYAPALALSYH  60
             MQNS+++++   SLPKGGGA++G+   +++AGPDG A+LS+PLP+S GRGYAP+L+L+Y+
Sbjct  1     MQNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYN  60

Query  61    SRGGNGPFGMGWDVNLSAIRRRTNKGIPTYGPNDEFTGPDGEVLVPLLTADGTPETRSAS  120
             S  GN+PFG+GWD  + AIRRRT+ G+P Y+  D F GP+GEVLV  L   G ++ RS S
Sbjct  61    SGTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSES  120

Query  121   ALLNVDAGGNYHVRAYRSRTESDFSRLEYWVADSNSAEAFWLLYRPDGQLFLLGRNAQAR  180
             +L  ++ G+ + V  YRSR ES+F+RLEYW +++ +A  FWL+Y PDGQ+ LLG+N+QAR
Sbjct  121   SLQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGATDFWLIYSPDGQVHLLGKNPQAR  180

Query  181   ISNPHNARQTAAWLIESSVSVSGEQIYYQYRAEDDTECadaekaahhaataQRYLIAVWY  240
             ISNP N  QTA WL+E+S+S  +EQIYYQYRAED++ C   E AAH +AT QRYL +V Y
Sbjct  181   ISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCETDELAAHPSATVQRYLQTVHY  240

Query  241   GNRTASRTLPAFTSA-PSAEDWLFTLVLDYGERDTDPAQAPDWLPPGKEDWPCRPDRFSS  299
             GN TAS  +P++ +  P   +W+F LV+DYGER    ++ P  L  +  +W CR DRFS 
Sbjct  241   GNLTASDVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMP--LFKATGNWLCRKDRFSR  298

Query  300   WHYGFELRTRRLCRQALMYHAVTALAGEEKPGDQPQLVARLCLDYQQTPSVSMLKSVRQN  359
              +YGFELRTRRLCRQ LM+H + +L+G+ K +D+P LV+RL LDY++ + VS L SVR+ 
Sbjct  299   YEYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVSVRRV  358

Query  360   AYEADGRVLSLPPLTFGWHTFTPPQAATWQQREDMGNLNPLQPYQLVDLNGEGLAGILYQ  419
             + E +  V +LPPL ++ + F P Q+A WQ  + ++N+N +Q  QL+DL+GEG++GILYQ
Sbjct  359   GHEDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPGILYQ  418

Query  420   DDGGWWYRAPVRQTGGSADEVTWDKAAPLPIMPalhaggalldlngdgYLEWLVTAPGLA  479
             D  GWWYR++ RQ+G   + VTW+K   LPI PA++  ++L+D+NGDG L+W++T+PGL 
Sbjct  419   DRNGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITGPGLR  478

Query  480   GHYGRTAERQWRNFTPLTALPVEYGHPRARLVDLTGSGLADLALIGPKSVRLYSGSGEGW  539
             G  ++ ++  W  FTPL ALP+EY+HPRA+L DL G+GL+DL LIGPKSVRLY  + +G 
Sbjct  479   GYHSQHPDGSWTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSVRLYVNNRDGF  538

Query  540   QKVQTVMQADSVTLPLSPTMDASMLIAFSDMAGSGQQHLVQVTASGVRYWPSLGHGRFGQ  599
                + V+Q++ +TLPL P  DA  L+AFSD+ GSGQ HLV+V+A+ V  WP+LGHGRFGQ
Sbjct  539   TEGRDVVQSGDITLPL-PGADARKLVAFSDVLGSGQAHLVEVSATQVTCWPNLGHGRFGQ  597

Query  600   PLDLPGFSQPPDRFNPQQLFLADIDGSGTTDLIYTLGDSLLIYLNQSGNAFAAPFSLPLP  659
             P+ LPGFSQ++  FNP+++ LAD+DGSG +DLIY  +D L I+ N+SGN+FA PF+L++P
Sbjct  598   PIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGFAKPFTLSFP  657

Query  660   EGARYDRTCSLQLADIQGQGVASLILTTPHPTPRHWVCHLSEQKPWLLNAMNNHMGASHS  719
             +G R+D TC LQ+AD+QG GV SLIL+ PH +P+HW C+L++ KPWLL+  NN+MGA+H+
Sbjct  658   DGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSETNNNMGANHT  717

Query  720   LYYRSSAQFWLDEKAEAAQAGKPQPACYLPFALHTVQRTEVTDEITGNRLVSSVRYRHGA  779
             L YRSS QFWLDEKA A  +G+  P CYLPF++HT+ +TE  DEI+GN+LV+++RY HGA
Sbjct  718   LHYRSSVQFWLDEKAAALATGQT-PVCYLPFPVHTLWQTETEDEISGNKLVTTLRYAHGA  776

Query  780   WDGREREFRGFGLVEVSDTDTRASRGSAAEISMPAISRSWYATGLVQVDEQLPRQYWQGD  839
             WDGREREFRGFG VE +D++ + ++G+A+E + PA+++SWYATGL  VD+ L+  YW+GD
Sbjct  777   WDGREREFRGFGYVEQTDSH-QLAQGNAPERTPPALTKSWYATGLPAVDNALSAGYWRGD  835

Query  840   SAAFGGFVPRFTIGSGDDEQAYVPDDSTR-FWLNRGVKGLLLRSELYGADDSVLATTPYS  898
               AF+GF PRFT+   + + +  P+D    +WLNR++KG  LRSELYG D+S     PY+
Sbjct  836   KQAFAGFTPRFTLWKEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLDGSAQQQIPYT  895

Query  899   VSETRPQVR-LVETRGVYPVTWSVSVETRTYLYERFSSDPQCSQQVLLSSDRYGQPLRQV  957
             V+E+RPQVR L +   V PV W+  VE+R+Y YER+ SDPQC+Q++ LSSD +GQPL+QV
Sbjct  896   VTESRPQVRQLQDGATVSPVLWASVVESRSYHYERIISDPQCNQDITLSSDLFGQPLKQV  955

Query  958   NISYPRRSQptkspypptlpptLFASSYDrqqqelrlvlqqsrWHTLSDSAAGVWLAGLS  1017
             ++ YPRR++PT +PYP TLP TLFASSYD QQQ LRL  +QS WH L   +  +++ GL+
Sbjct  956   SVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHL--IGNELRVLGLP  1013

Query  1018  DATRSDIFTYSATSVPAQGLTLEQLSASGNLTGEDRPATFAGQQQVWYLDTQGEAVTATP  1077
             D+TRSD FTY A  VP +GL LE L A  +L ++D+P  +  QQ+  Y D + ++   TP
Sbjct  1014  DGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTDGKNQTPLKTP  1073

Query  1078  AIPPRLAFSESAVLDEPLIASLAQDISAE----TVTQAGYSLSGYLFARRGESGKLLWTV  1133
             +  + +AF+E+AVL E+L++++  +I+++     +TQAGY    YLF+R GE+   +W  
Sbjct  1074  TRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRTGENK--VWVA  1131

Query  1134  RQGYSTYGSAEHFWLPESTRDTLLTGAITVTRDRYNCVITQLRDAAGLTTSAQYDWRFLT  1193
             RQGY+ YG+  +FW P + R++LLTG +T+ +D   CVITQ +DAAGLT SA+YDWRFLT
Sbjct  1132  RQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSANYDWRFLT  1191

Query  1194  PVSVTDANDNRHTVTLDALGRVSVMRFSGTENGNATGYSA---NAIDPPQTAEQALALSA  1250
             P  +TD NDN H +TLDALGR    RF G E+G ATGYS+   +++ PP+  + A+ L++
Sbjct  1192  PTQLTDINDNVHLITLDALGRPVTQRFWGIESGVATGYSSSEEKPFSPPNDIDTAINLTG  1251

Query  1251  PLPVHQMLVYITDSWM  1266
             PLPV Q LVY  DSWM
Sbjct  1252  PLPVAQCLVYAPDSWM  1267


 Score = 92.0 bits (330),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 52/83 (63%), Positives = 65/83 (79%), Gaps = 6/83 (7%)

Query  1274  PPHVVVLTTDRYDSDPQQQIRQQVVFSDGFGRVLQTSVRQTDGGAWQRSAAGALVSASNG  1333
             PPH + LTTDRYD D++QQIRQQV FSDGFGR+LQ+SVR+  G AWQR+  G+LV+    
Sbjct  1327  PPHNLTLTTDRYDRDSEQQIRQQVAFSDGFGRLLQASVRHEAGEAWQRNQDGSLVT----  1382

Query  1334  APQLATTTSRWAVSGRTEYDNKG  1356
               ++  T +RWAV+GRTEYDNKG
Sbjct  1383  --KVENTKTRWAVTGRTEYDNKG  1403

31) MU9_1212 in NC_020418


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1032 bits (3913),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 653/1490 (44%), Positives = 985/1490 (67%), Gaps = 29/1490 (1%)

Query  1     MNNTEQVRIETPSLPKGGGAITGMTGEPGIIGPDGASAFSVPLPVSRGRGYFPEPVLSYN  60
             M+N++   +   SLPKGGGAITGM       GPDG +A+S+PLP+S GRGY P   L+YN
Sbjct  1     MQNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYN  60

Query  61    SRNGNDAFGLGWTVSMAALSRRVVKGVPRYTNEDEFTDPDNEVIVPVLGSDGKPVSSPKR  120
             S  GN +FGLGW  ++ A+ RR   GVP Y + D F +P+ EV+V  L   G++   +  
Sbjct  61    SGTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSES  120

Query  121   KLLDTDLKTEYRVTQYRPRLETSSDLLQYWQAERDVPGCPSEFWVIFAADGQVHLFGYED  180
              L + +L + + VT YR+RLE+  + L+YWQ++   +   ++FW+I+++DGQVHL+G + 
Sbjct  121   SLQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGA---TDFWLIYSPDGQVHLLGKNP  177

Query  181   SARIYQPDNPRHIARWLINASVSPEGEQIYYRYSNEDNEGCSEDEIRFHPKQSY-RYPEK  239
              ARI +P N  + A+WL++AS+S+++EQIYY+Y  ED+ GC  DE+  HP  +  RY + 
Sbjct  178   QARISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCETDELAAHPSATVQRYLQT  237

Query  240   ICYGNKKSGRHFPCVNNSAD-DNKWLFFLVFDYGQRSCTLADIPGWQIPAGKQWPLRQDI  298
             + YGN  ++  FP +N      + W+F LVFDYG+R  +L+++P   + A  +W  R+D 
Sbjct  238   VHYGNLTASDVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMP--LFKATGNWLCRKDR  295

Query  299   FSSYEYGFEIRIRRLCRQVLLFHRTADLKAGTDQGSDPELVSRLVLTYDESPVITTLVAV  358
             FS YEYGFE+R RRLCRQ+L+FHR   L + +  + +P LVSRL+L YDE+++++TLV+V
Sbjct  296   FSRYEYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVSV  355

Query  359   RRSGFNDPADKNGITVLPPLEFNWTKPEKWSEHQWETLDHIGKLNSHQPYQFLDLWGEGS  418
             RR G     D+N +T LPPLE+     E      W+++D ++++N+ Q  Q+LDL GEG 
Sbjct  356   RRVG---HEDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGV  412

Query  419   KGILYKNRGAWWYRSPVRNKNSSDINATTWSEPQLLPDIPALDKHTLLIDLDGDGRLEWV  478
              GILY++R +WWYRS+ R + + ++NA TW+  QLLP  PA++ ++ L+D++GDG+L+WV
Sbjct  413   PGILYQDRNGWWYRSAQR-QAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWV  471

Query  479   VIHQRANGYYPQDKNNAEQWLRFSSLSGLPTEFHYPAAQLIDFTGKGLYDLVVIGPKSVR  538
             +      GY +Q+ + +  W RF++L +LP E+  P AQL D+ G GL DLV+IGPKSVR
Sbjct  472   ITGPGLRGYHSQHPDGS--WTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSVR  529

Query  539   LYPSDRKGWKAGTIIKQPDGVTLPVLSGDERSFTGFSDLPGTGQQHLVRINMDGVYYWPN  598
             LY ++R G   G  + Q++++TLP+ ++D R + +FSD+ G+GQ HLV ++   V  WPN
Sbjct  530   LYVNNRDGFTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWPN  589

Query  599   KGNGYFGHPVHIPGFI-PGEHFDPANLYLADIDGNGSANIIYAHSDYLDIYINQSGNRFS  657
              G+G FG+P+ +PGF  ++  F+P  + LAD+DG+G+A++IY H+D LDI+ N+SGN F+
Sbjct  590   LGHGRFGQPIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGFA  649

Query  658   KPVKLPLPEGVRYDHTCELQFADIQGNGVDCMILIRPLPELRHWLFEFSTKKPWLLSEVN  717
             KP  L++P+G+R+D+TC+LQ AD+QG GV  +IL  P    +HW  +++  KPWLLSE N
Sbjct  650   KPFTLSFPDGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSETN  709

Query  718   NNMGMNYALNYRSSAQFWLDEKAAS-EHQKTPVCYLPFPVHCVWKTETKDEITGNTLTST  776
             NNMG N +L+YRSS QFWLDEKAA+    +TPVCYLPFPVH +W+TET DEI+GN L +T
Sbjct  710   NNMGANHTLHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVTT  769

Query  777   VNYRHGAWDGSEREFRGFGYVEITDSLLTENEEGKPETTVPKQTRSWFATGIESLDKRFP  836
             + Y HGAWDG EREFRGFGYVE TDS    + ++ PE T P  T+SW+ATG+ ++D+ ++
Sbjct  770   LRYAHGAWDGREREFRGFGYVEQTDSHQLAQGNA-PERTPPALTKSWYATGLPAVDNALS  828

Query  837   GEYWNEDKAAFPGFAPRFTQNYGDKETECKDDCKGAANYWlrrglkgqllrqEVYGIDKS  896
             + YW  DK AF+GF+PRFT    +K+     +  +   YWL R+LKGQ LR E+YG+D S
Sbjct  829   AGYWRGDKQAFAGFTPRFTLWKEGKDVPLTPE-DDHNLYWLNRALKGQPLRSELYGLDGS  887

Query  897   KLSAVPYEVTEQRIAVR-LAEKRGCYPVVRPSVIEHRHYLYEQFAIDPKCTQTVILSSDQ  955
                 +PY VTE R  VR L +     PV+++SV+E R Y YE++  DP+C Q + LSSD 
Sbjct  888   AQQQIPYTVTESRPQVRQLQDGATVSPVLWASVVESRSYHYERIISDPQCNQDITLSSDL  947

Query  956   YGLPLKQITISYPRRKR-DINPYQSIESLLESTWVSGYDLQQEKLRFVLQKNSYYVLDNH  1014
             +G PLKQ+++ YPRR++   NPY   ++L ++   S+YD QQ+ LR+  +++S   L   
Sbjct  948   FGQPLKQVSVQYPRRNKPTTNPYP--DTLPDTLFASSYDDQQQLLRLTCRQSSWHHL--I  1003

Query  1015  GNGIRQLAIADAQRQDTAEFDRNELPQDGYSLESLLQKDSLSNKPKQFEFSGQTRVAYLN  1074
             GN +R L+++D+ R D+  +D +++P DG +LE+L   +SL    K  E+  Q R  Y +
Sbjct  1004  GNELRVLGLPDGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTD  1063

Query  1075  KSGKSGLLSPDFPVRVAYMEHAEFDVNHLKEMKDYFPEGSVEKLLSSGGYIETKYAFPEK  1134
                ++ L +P     +A+ E A +  + L    + +  + +  +L+ +GY +  Y FP  
Sbjct  1064  GKNQTPLKTPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRT  1123

Query  1135  DKKEEIIYAAQRDITKYGTQEQFYKPMSYRATNLTEFNKLKWDKYFCVVVKYTDSAGGIT  1194
             +  E+ +  A+++ T YGT+ QF +P++ R + LT    LKWD  +CV+ +  D+AG   
Sbjct  1124  G--ENKVWVARQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTV  1181

Query  1195  KPEYNFKYLSPVKITDINNNVSSLTYNGTGQVASVRFSGTEQGKKTGYS---DTALTIPD  1251
              ++Y+ ++L+P ++TDIN+NV  +T ++ G+  + RF G E G  TGYS   + +++ P+
Sbjct  1182  SANYDWRFLTPTQLTDINDNVHLITLDALGRPVTQRFWGIESGVATGYSSSEEKPFSPPN  1241

Query  1252  SIADALSLTTRLPVSELFLYEPNSWMLKVSPEFMAPEYSDIISKLQNDNIITEDGYVSAF  1311
              I  A++LT  LPV++ ++Y P+SWM   S E       +    L++  IITED  + A+
Sbjct  1242  DIDTAINLTGPLPVAQCLVYAPDSWMPLFSQETFNTLTQEEQETLRDSRIITEDWRICAL  1301

Query  1312  SRYR-INEDNRCLIKAVIIPGEKRLPPHVLQLKTDRYDNDNAQQIRQKVTFFDGLSRQLQ  1370
             +R R ++ ++       ++     LPPH L L TDRYD D+ QQIRQ+V+F DG++R LQ
Sbjct  1302  TRRRWLQSQKISTPLVKLLTNSIGLPPHNLTLTTDRYDRDSEQQIRQQVAFSDGFGRLLQ  1361

Query  1371  TSVRVESDNTVIRNGKGSHSPKKHNSDFRWSVTGRKEYNNKGFIIREYQPYFINDWKYDV  1430
             +SVR E++++  RN  GS   K +N+  RW+VTGR EY+NKG  IR YQPYF+NDW+Y  
Sbjct  1362  ASVRHEAGEAWQRNQDGSLVTKVENTKTRWAVTGRTEYDNKGQTIRTYQPYFLNDWRYVS  1421

Query  1431  DFISGNERWSDTNYYDPLGRLIKVVTAKGYLRNTIYTPWFIAQEDENDTV  1480
             D  + +E  +DT+ YDP+GR I+V+TAKG LR++ Y PWF   EDENDT 
Sbjct  1422  DDSARKEAYADTHIYDPIGREIRVITAKGWLRQSQYFPWFTVSEDENDTA  1471

32) RBRH_00598 in NC_014718


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score = 1011 bits (3831),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 685/1503 (46%), Positives = 991/1503 (66%), Gaps = 52/1503 (3%)

Query  7     QSASNVTLSEPTLPKGGGAMRGLGEALGPVGSSGVATMTLPLPISAGRGYAPQLALRYAS  66
             Q++   +++E +LPKGGGA+ G+GEAL P G+ G+A+++LPLPISAGRGYAP L+L Y S
Sbjct  2     QNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNS  61

Query  67    GSGNGPFGVGWHLGLTSIGRRTACGTPQYGDEDEFIGPGGDVLEPERDADGAMVPPSEVS  126
             G+GN+PFG+GW+ G+ +I RRT+ G P+Y++ D F+GP G+VL    +  G     SE S
Sbjct  62    GTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSE-S  120

Query  127   TYNDLDLDDTYRVTRYFPRIERDFARIEHWIGQTHGG-DFWLVHDAGGDLHCFGKTASAR  185
             + ++++L+ T+ VT Y +R+E +F R+E W  QT G+ DFWL+  ++G++H +GK + AR
Sbjct  121   SLQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGATDFWLIYSPDGQVHLLGKNPQAR  180

Query  186   IADPAQPSHIAVWLLEESVSPNGQHIGYWYKPEDDAGVDLQGSEARRDHAANRYLTQVKY  245
             I++P + ++ A WLLE S+S+++++I Y Y++ED+AG + +   A+   + +RYL  V Y
Sbjct  181   ISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCETDELAAHPSATVQRYLQTVHY  240

Query  246   GNVLAANALYLFTSSKLDDEPWLFSLVFDYGERGTDPLIRPPWLAAAHWPVRHDAFSRYD  305
             GN+ A++ +  + +       W+F LVFDYGER       P   A+++W  R D FSRY+
Sbjct  241   GNLTASDVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRKDRFSRYE  300

Query  306   YGFEVRCHRLCRQALMFHHFPDELGEP-----ATLVARLLLEYDENPVLTRLVGVQRLAY  360
             YGFE+R +RLCRQ LMFH++    G++     ++LV+RL+L+YDEN++++ LV+V+R++ 
Sbjct  301   YGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVSVRRVGH  360

Query  361   epddtdepddtLQSLPPLELDYTPFDASVSSGQWQPCDLFPGLNNAHPYQLVDLYGEGIA  420
             E ++T      + +LPPLEL Y PF++   ++ WQ+ D+++ +N  +  QL+DL GEG++
Sbjct  361   EDNNT------VTALPPLELAYQPFEPE-QTALWQSMDVLANFNTIQRWQLLDLKGEGVP  413

Query  421   GILYRVGHLWYYRAPMRSSEGGDAVTYDAW---RPLPEIPSLQSPAMALTDINGDGRLDW  477
             GILY+  + W YR++ R  ++G+ +   +W   + LP  P++Q  A +L DINGDG+LDW
Sbjct  414   GILYQDRNGWWYRSAQR--QAGEEMNAVTWGKMQLLPITPAVQDNA-SLMDINGDGQLDW  470

Query  478   LVTQPGLAGYFSLAPDGTWSTFTPLSALPVEFFSQQATLADLMGAGLSDLALIGPKSVRL  537
             ++T PGL GY S  PDG+W+ FTPL ALP+E+   +A LADLMGAGLSDL LIGPKSVRL
Sbjct  471   VITGPGLRGYHSQHPDGSWTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSVRL  530

Query  538   YANKRHGFARGIDVEQAS--TLPIAGRDAREVVAFCDLLGSGQQHLIRIRCDEVTVWPNL  595
             Y N+R+GF+ G DV Q++  TLP++G DAR +VAF D+LGSGQ HL+ +   +VT WPNL
Sbjct  531   YVNNRDGFTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWPNL  590

Query  596   GRGRLGQPFSFAPLPFSAQQFNPACVYLADLDGSGAADLLYAQSDRIRIFFNQSGNGFAP  655
             G+GR+GQP+ ++ ++ SA  FNP  V LADLDGSG+ADL+Y ++DR+ IF N+SGNGFA 
Sbjct  591   GHGRFGQPIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGFAK  650

Query  656   PVDLALPPGVRFDRLCALSVADIQGQGMASLVLSVPHPSPKHWRYDLARAKPYLMNVINN  715
             P  L++P G+RFD  C L VAD+QG G+ SL+LSVPH +P HWR DL+ AKP L++  NN
Sbjct  651   PFTLSFPDGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSETNN  710

Query  716   NMGMAHRIVYRSSAQEWLDEK----QSSTRSVSGLPFPVHVVSRHIQLDEISGNQLVQQY  771
             NMG  H + YRSS Q WLDEK     ++  +V  LPFPVH + +    DEISGN+LV   
Sbjct  711   NMGANHTLHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVTTL  770

Query  772   QYRQGVYDGREREFRGFGFVETQDTHEDAKPAGRNVSDAPPRLSRTWYHTGREADEATLY  831
             +Y +G  DGREREFRGFG+VE  D+H+ A+  G     +PP L+++WY TG  A + +L 
Sbjct  771   RYAHGAWDGREREFRGFGYVEQTDSHQLAQ--GNAPERTPPALTKSWYATGLPAVDNALS  828

Query  832   GEPWQ-DPDAFNCSPTRLTRWDANTSQDVLLDDSDAKRRWWLYRALNGSVLRTEVYGLDG  890
             +  W+ D +AF     R+T W  + ++DV L   D     WL RAL+G  LR+E+YGLDG
Sbjct  829   AGYWRGDKQAFAGFTPRFTLW--KEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLDG  886

Query  891   TSRQQTPYRVTMARYQVREVQSAGSDHTPVAMPLPLEQLDYAYERIDGDPQVSQTVTLRI  950
             +++QQ PY VT +R QVR++Q  G+  +PV  +  +E   Y YERI +DPQ +Q +TL  
Sbjct  887   SAQQQIPYTVTESRPQVRQLQD-GATVSPVLWASVVESRSYHYERIISDPQCNQDITLSS  945

Query  951   DAYGVPLHSVTVHYPRRAKPLTSPYPDTLPPSAWHSSYDPQQQCLRLTEQRASVW-HLTH  1009
             D +G PL  V+V+YPRR KP T+PYPDTLP +   SSYD QQQ LRLT  R S W HL  
Sbjct  946   DLFGQPLKQVSVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTC-RQSSWHHLIG  1004

Query  1010  PQQWRLGLPWQQRHNALTYDAARVPVGGLNFENLSQVDGLLGDDQVRVFGGQSVVVYRDT  1069
              + + LGLP   R +A+TYDA +VPV+GLN+E L   ++L++DD+ R +  Q    Y D 
Sbjct  1005  NELRVLGLPDGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTDG  1064

Query  1070  DAHG---APDFVALVDHQEVAELDSSSLAAYDGLLDEPTLTAKLTQAGYHTSPTVLAVPN  1126
               +    +P   AL+   E A L  S L+A+DG +    L + LTQAGY+  P ++  P 
Sbjct  1065  KNQTPLKTPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLF--PR  1122

Query  1127  AVEAPVWVIASDYRTYRGPDNFYVPSEVQKTRLTGATQLSYDPYYCVVTQVQDALGNITS  1186
             + E  VWV   +Y  Y    +F  P   +++ LTG   L  D  YCV+TQ QDA G   S
Sbjct  1123  TGENKVWVARQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVS  1182

Query  1187  AQYDYRFLQPWRMTDVNDNHHEVQFDAMGRVVASTFYGTEQARDVGFDPITVSPVPTGLT  1246
             A+YD RFL P ++TD+NDN H + +DA+GR V+  F G E +   G+ +    P +    
Sbjct  1183  ANYDWRFLTPTQLTDINDNVHLITLDALGRPVTQRFWGIESGVATGYSSSEEKPFSPPND  1242

Query  1247  VAQAIDQAGVSAQRVASVHATDLFAWMGQVSRADLPTEDADECWQQLIAERLITPQGHIR  1306
             +  AI+ +G  +     V A D  +WM   S+  + T   +E  + L   R+IT + +I 
Sbjct  1243  IDTAINLTGPLPVAQCLVYAPD--SWMPLFSQETFNTLTQEEQ-ETLRDSRIITEDWRIC  1299

Query  1307  ASARDGLCSGVLKRLSEPVRQALARAARNPVNVVTLTADRYPNDTEQQVRVDIAYTDGFG  1366
             A +R     +  +++S P+ + L+ +   P + +TLT+DRY  D+EQQ+R ++A++DGFG
Sbjct  1300  ALTRRRWLQS--QKISTPLVKLLTNSIGLPPHNLTLTTDRYDRDSEQQIRQQVAFSDGFG  1357

Query  1367  RTLQGCAKVPGGLAWQCTADGEIVVGADGKPEEVDTGSAPRWAVSGRIEYDNKGQPVRRY  1426
             R LQ+  +  +G AWQ   DG +V   +         +  RWAV+GR EYDNKGQ +R Y
Sbjct  1358  RLLQASVRHEAGEAWQRNQDGSLVTKVE--------NTKTRWAVTGRTEYDNKGQTIRTY  1409

Query  1427  QPYFMNDWAYVADRAMRSCGYADTTYYDPIGRAMRVVTAKGYERRTSIYPWFVVNEDEND  1486
             QPYF+NDW YV+D + R  +YADT  YDPIGR +RV+TAKG  R++  +PWF V+EDEND
Sbjct  1410  QPYFLNDWRYVSDDSARKEAYADTHIYDPIGREIRVITAKGWLRQSQYFPWFTVSEDEND  1469

Query  1487  TAG  1489
             TA+
Sbjct  1470  TAA  1472

33) BB2000_2659 in NC_022000


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score =  995 bits (3770),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 577/1291 (45%), Positives = 879/1291 (69%), Gaps = 28/1291 (2%)

Query  1     MQNSEKLTFDAPSLPKGGGAVTGLTGNMAAVGPDGAATFSVPLPISKGRGYAPSLSLTYQ  60
             MQNS+ ++    SLPKGGGA+TG+   +++ GPDG A++S+PLPIS GRGYAPSL+L Y+
Sbjct  1     MQNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYN  60

Query  61    NQAGNGVFGFGWLVGEMSIRRRTSKGVPSYTQQDEFIGPEGEVIVPIINNNGDIETAQRN  120
             + +GN+ FG+GW  G M+IRRRTS GVP+Y + D F+GPEGEV+V  +N+ G+ +    +
Sbjct  61    SGTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSES  120

Query  121   TLLGVKLAHQYQVTTYRSRIEKSFSRFEYWLLDEMNAPANTPKQFWVMLNANGDVHLFGY  180
             +L G++L+  + VT YRSR+E  F+R+EYW     ++ +  + +FW++ +++G+VHL+G 
Sbjct  121   SLQGINLGATFTVTCYRSRLESHFNRLEYW-----QPQTTGATDFWLIYSPDGQVHLLGK  175

Query  181   ESTAQIVDSQNSEHIAQWNLNASVSATGEQIEYQYRAEDEQGCDEHEIKNHPNSNTQRYL  240
             ++ A+I ++ N ++ AQW L+AS+S+ +EQI YQYRAEDE GC+ +E+  HP++  QRYL
Sbjct  176   NPQARISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCETDELAAHPSATVQRYL  235

Query  241   GQVYYGNPVGERTFSCTKPHNTLPKNALFTLVFDYGERSSALADYPQWQSHSAWALRKDC  300
               V YGN  +   F+  + ++ L    +F LVFDYGER ++L++ P  ++ + W  RKD 
Sbjct  236   QTVHYGNLTASDVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRKDR  295

Query  301   FSVFHYGFELRTRRLCRQVLMYHRLESLEKQTALAETPQLVARLTLTYTESEAGTVLVSA  360
             FS ++YGFELRTRRLCRQ+LM+HRL++L  Q+   + P LV+RL L Y E+   + LVS 
Sbjct  296   FSRYEYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVSV  355

Query  361   QQSAFNDNKDTQSLITLPPVKFDWQTVGTTKQAQWQVLEELASFTPYQPYQYVDLFGEGI  420
             ++ + +DN+   ++ +LPP+ +  Q     + A WQ ++ LA+F   Q  Q +DL GEG+
Sbjct  356   RRVGHEDNN---TVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGV  412

Query  421   AGVLYQDSGAWWYRAPIRKEDKQDLNAISWDKAKKLPVIPSLQNSALLTDVTGDGKLDWL  480
             +G+LYQD  +WWYR++ +++  +++NA++W+K + LP+ P++Q++A L D+ GDG+LDW+
Sbjct  413   PGILYQDRNGWWYRSA-QRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWV  471

Query  481   VTQDDINGYYTQHKSKAESWLNFVPLDAMPVEYFHPRAEIISLTGCGFADLALIGPRSLR  540
             +T  ++ GY +QH     SW  F PL+A+P+EY HPRA++  L G G++DL LIGP+S+R
Sbjct  472   ITGPGLRGYHSQHPD--GSWTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSVR  529

Query  541   LYAGSAQGWKKSKEVIQAEGVTLPIKNINRRTLVAFSDVLGSGQQHLIKVDYQGVTCWVH  600
             LY  + +G   +++V+Q+ ++TLP+   + R LVAFSDVLGSGQ HL+ V    VTCW +
Sbjct  530   LYVNNRDGFTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWPN  589

Query  601   LGDGKFSNPITIPGFSADRLKFNPNQLYFADLDGSGTTDIIYAQSTHLEVYFNQSGNQFV  660
             LG+G+F++PI +PGFS     FNP+++ +ADLDGSG +D+IY ++ +L+++ N+SGN F 
Sbjct  590   LGHGRFGQPIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGFA  649

Query  661   RGDDIALPKGGRFDNQCQLQVADVQGLGVASILLTKSYPTPQHWVLSLQNKKPWLLTSIN  720
             +   +++P G RFD+ CQLQVADVQGLGV S++L+ +  +P+HW   L N KPWLL+  N
Sbjct  650   KPFTLSFPDGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSETN  709

Query  721   NNMGLIQRLHYRSSAQYWLDEKLVRQQQNKAQAVNHLPFALHTLWKINTEDEITQSQLTQ  780
             NNMG  + LHYRSS Q+WLDEK       ++ +V  LPF++HTLW+ +TEDEI+ ++L  
Sbjct  710   NNMGANHTLHYRSSVQFWLDEKAAALATGQT-PVCYLPFPVHTLWQTETEDEISGNKLVT  768

Query  781   TFNYRYGVWDGKEKEFRGFGCVETTNAESFKSEENTTDKTPSALTRQWFSTGNSLVDTQL  840
             T+ Y  G WDG+E+EFRGFG VE T+++ + ++ N+ ++TP+ALT+ W++TG + VD  L
Sbjct  769   TLRYAHGAWDGREREFRGFGYVEQTDSHQL-AQGNAPERTPPALTKSWYATGLPAVDNAL  827

Query  841   YNEFWQGDDEAFPYFSPRFTQGEGGSEKVCDNKQYQQYAYWLERALQGQLLRKEVYGLDN  900
                +W+GD +AF+ F+PRFT    G + V    + ++  YWL+RAL+GQ LR E+YGLD 
Sbjct  828   SAGYWRGDKQAFAGFTPRFTLWKEGKD-VPLTPEDDHNLYWLNRALKGQPLRSELYGLDG  886

Query  901   SVVANVPYIVTEQRPQAR-LIETQGRAPVVMPSIVESREYHYERIATDPACHQQITLEQD  959
             S   ++PY VTE RPQ R L +    +PV+ +S+VESR YHYERI +DP C+Q+ITL  D
Sbjct  887   SAQQQIPYTVTESRPQVRQLQDGATVSPVLWASVVESRSYHYERIISDPQCNQDITLSSD  946

Query  960   GYGFVSKTVSIDYPRRAKRIKNPYQHYESLPETLWASSYDAQQHVLRLGLSRQTC-HHLI  1018
              +G   K VS++YPRR K   NPY   ++LP+TL ASSYD QQ++LRL   RQ+  HHLI
Sbjct  947   LFGQPLKQVSVQYPRRNKPTTNPYP--DTLPDTLFASSYDDQQQLLRLT-CRQSSWHHLI  1003

Query  1019  YPEKQVYQLSITAANRQDIWTFGAEEQPKEGLRVEVLLATNNLLTQKSASVFAGQQQFAY  1078
               E +V  L++  + R D  T++A + P +GL +E L A N+L+++  +  +  QQ+  Y
Sbjct  1004  GNELRV--LGLPDGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFY  1061

Query  1079  LDTEGHATLDEPDFPIRLAYSETAELDKETAKAISQPYPHLNLDNVIKNAGYQQSAYLFA  1138
              D   ++ L  P     +A++ETA L      A+       +L  ++ +AGYQQ +YLF+
Sbjct  1062  TDGKNQTPLKTPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFP  1121

Query  1139  DESEKNKTLWVKPLLGIIRYGSLAQFYKPLIYQQSALSCKYKLLWDKQFCVLMGRISPLN  1198
               +E++  +WV    G   YG+ AQF +P+  ++S L+ K  L WD ++CV+     +  
Sbjct  1122  RTGENK--VWVAR-QGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAG  1178

Query  1199  IHDFHLTYDWRFLSPNSMTDENHNLHQVTFDGFGRVVTTRFSGTEKGQQSGYS---HKAF  1255
             +      YDWRFL+P  +TD N+N+H +T+D++GR VT RF G E G  +GYS   +K+F
Sbjct  1179  L-TVSANYDWRFLTPTQLTDINDNVHLITLDALGRPVTQRFWGIESGVATGYSSSEEKPF  1237

Query  1256  KMPTTINDALALTSTLPIATGFVYVTDSWMS  1286
               P  I+ A+ LT+ LP+A  +VY  DSWM+
Sbjct  1238  SPPNDIDTAINLTGPLPVAQCLVYAPDSWMP  1268


 Score =  149 bits (549),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 89/157 (57%), Positives = 120/157 (77%), Gaps = 6/157 (3%)

Query  1285  MSTSAKLPPHVLQIMTDRYDNDPQQQIRQQIAFSDGFGRLLQTSIRVEAGEAFLRSDNAT  1344
             ++ S  LPPH L + TDRYD D++QQIRQQ+AFSDGFGRLLQ+S+R EAGEA  R+++++
Sbjct  1320  LTNSIGLPPHNLTLTTDRYDRDSEQQIRQQVAFSDGFGRLLQASVRHEAGEAWQRNQDGS  1379

Query  1345  LVVDQNQQAQQKSTEIRWAISGETEYDNQGNIKRIYQPYFLNDWRYISEGSSQPNRFADT  1404
             LV      ++  +T  RWA++G TEYDN+G+  R YQPYFLNDWRY+S++S++ + +ADT
Sbjct  1380  LV------TKVENTKTRWAVTGRTEYDNKGQTIRTYQPYFLNDWRYVSDDSARKEAYADT  1433

Query  1405  HYYDALGRLYRVNTAKNYQRNTIVTPWFTVQEDENDT  1441
             H YD++GR  RV TAK   R++   PWFTV EDENDT
Sbjct  1434  HIYDPIGREIRVITAKGWLRQSQYFPWFTVSEDENDT  1470

34) Y11_26981 in NC_017564


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score =  972 bits (3683),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 597/1184 (51%), Positives = 841/1184 (72%), Gaps = 31/1184 (2%)

Query  3     NNKQQVNVAPLSLPKGGGAIAGMGESLGAIGPSGLASLTVPLPISAGRGYAPALALSYSS  62
             +N Q  +V+ LSLPKGGGAI+GMGE+L + GP G+A+L++PLPISAGRGYAP+L+L+Y+S
Sbjct  2     QNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNS  61

Query  63    GGGNSPFGLGWQMGVLSIRRRTSRGTPRYDDRDEFIGPNGELLVAVSEE-------SEPS  115
             G GNSPFGLGW+ GV++IRRRTS G P YD+ D F+GP+GE+LV   +E       SE+S
Sbjct  62    GTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESS  121

Query  116   KDSRYSTTDFNVTCYQPRIEGGFDRIEFWQPQDATSGLTAFWLIYGADGQQHCLGKSASA  175
              ++    + F VTCY++R+E+ F+R+E+WQPQ  T+G T FWLIY++DGQ H LGK++ A
Sbjct  122   LQGINLGATFTVTCYRSRLESHFNRLEYWQPQ--TTGATDFWLIYSPDGQVHLLGKNPQA  179

Query  176   HIAAPDNPTHIAEWLLQESVSPSGEHICYDYQCENDIGVEAAESAAHPQSSAQHYLQQVR  235
             +I+ P N  + A+WLL+ S+S+ +E+I Y+Y+ E++ G E+ E AAHP ++ Q+YLQ V+
Sbjct  180   RISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCETDELAAHPSATVQRYLQTVH  239

Query  236   YGNVIPSDSLHAFKKPSGKDDNWLFTLVFDYGERPNTLSATPQLHTSDGWSARQDPFSRY  295
             YGN+ +SD + +++        W+F LVFDYGER N+LS  P + +++ W  R+D FSRY
Sbjct  240   YGNLTASDVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRKDRFSRY  299

Query  296   EYGFEIRTRRLCQQVLMFHNLRLLSGDKK-QSEAALVGRLRLNYLSSPYASQLISCQQIA  354
             EYGFE+RTRRLC+Q+LMFH L+ LSG+ K + E+ALV+RL L+Y  ++  S L+S ++++
Sbjct  300   EYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVSVRRVG  359

Query  355   HEPDGSALTLPPLEFDYQEFQAETTASWQAMPEWDTFSPY--YQLVDLNGEGLPGMLYQD  412
             HE + +  +LPPLE+ YQ F++E TA WQ+M     F+     QL+DL+GEG+PG+LYQD
Sbjct  360   HEDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPGILYQD  419

Query  413   SDSWRYHPPVRQPDSE-NGVSYGEAQILPAIPALRDSASLMDINGDGRLDWVISQPGFAG  471
              ++W+Y+++ RQ++ E N+V+ G  Q+LP  PA++D+ASLMDINGDG+LDWVI+ PG+ G
Sbjct  420   RNGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITGPGLRG  479

Query  472   YYSRSPDESWTQFTPLSALPAEYFHPQAQLADLIGDGISDLALIGPNSVRLYANQRDGFA  531
             Y S+ PD SWT+FTPL ALP EY HP+AQLADL+G G+SDL LIGP+SVRLY N+RDGF+
Sbjct  480   YHSQHPDGSWTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSVRLYVNNRDGFT  539

Query  532   TARQVYQDAAIALPIPGASQSELVAFSDPLGSGQQHLLRVRHDSVTCWPNLGHGYFAKPI  591
              +R+V Q + I+LP+PGA    LVAFSD LGSGQ HL+ V    VTCWPNLGHG F++PI
Sbjct  540   EGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWPNLGHGRFGQPI  599

Query  592   HLSGFNQPADTFNPQHIWLADIDGSGTVDLIYAHQNNLLIYRNQSGNGFAEPLKLPLPHG  651
              L+GF+Q+A +FNP+++ LAD+DGSG  DLIY H + L I+ N+SGNGFA P+ L++P+G
Sbjct  600   VLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGFAKPFTLSFPDG  659

Query  652   VRFDNTCQLTLADVQGLGVTSIMLSVPHMTSRHWRYDFVTAKPYLLCTVNNNMGAESQLA  711
             +RFD+TCQL +ADVQGLGV S++LSVPHM+++HWR D+  AKP LL   NNNMGA+  L 
Sbjct  660   LRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSETNNNMGANHTLH  719

Query  712   YRSSAQFWLDEKALAASRKQKIACGLPFPLHLLAHTTQLDEITQNSLCQQASYYHGFYDG  771
             YRSS QFWLDEKA A +  Q   C LPFP+H L +T   DEI+ N L     Y HG  DG
Sbjct  720   YRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVTTLRYAHGAWDG  779

Query  772   VEREFRGFGRVDTLDTHASAQGSATERTAPSSSRSWFHTGRADDEIRYFGEYWQGDERAY  831
              EREFRGFG V+  D+H  AQG+A ERT+P+ ++SW+ TG +  +    + YW+GD +A+
Sbjct  780   REREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPAVDNALSAGYWRGDKQAF  839

Query  832   HLNKTRLTSFNSLTESDDL-LTEITPEQHYWLFRALKGSLLRSELYGLDNSGLDEVPYTT  890
                  R   F    E+ D+ LT    ++ YWL RALKG  LRSELYGLD S+ +++PYT 
Sbjct  840   AGFTPR---FTLWKEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLDGSAQQQIPYTV  896

Query  891   SSARYQVRQVRASAM--PIVMPQVLEQLSYHYERIPQDPQCSQQIVMRCNQYGQPLQTVA  948
             + +R QVRQ++ +A   P++ + V+E  SYHYERI  DPQC+Q+I +  + +GQPL+ V+
Sbjct  897   TESRPQVRQLQDGATVSPVLWASVVESRSYHYERIISDPQCNQDITLSSDLFGQPLKQVS  956

Query  949   VNYPRRAQDSVSPYS-WLATANWASSYDEQQLLLRISESQQTYLNIVEDSALLLGQPKQQ  1007
             V+YPRR + + +PY+  L+ +  ASSYD+QQ LLR++  Q +  +++ +   +LG P   
Sbjct  957   VQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLIGNELRVLGLPDGT  1016

Query  1008  RSDAITYAADIVPLNGLSYEILIEREKSLGDPIENVFAGQSEVFY---HPKYRL-----Q  1059
             RSDA+TY A  VP++GL+ E L   +  ++D     +  Q   FY     +  L     Q
Sbjct  1017  RSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTDGKNQTPLKTPTRQ  1076

Query  1060  GLAIYGETAEFDDISLIALD-DMLPAGLARDEQLISAGYKKAPRLFARTDETDVWVAKRG  1118
             +L  + ETA + +  L A+D ++ P  L+    L  AGY++ P LF+RT+E  VWVA++G
Sbjct  1077  ALIAFTETAVLTESLLSAFDGGITPDELP--GILTQAGYQQEPYLFPRTGENKVWVARQG  1134

Query  1119  LVEYGDASQFYRLQAQQSTELVGKTQLGWDAHYCAVTSITQADG  1162
               +YG  +QF R  AQ+++ L GK  L WD+HYC +T   +A G
Sbjct  1135  YTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAG  1178

35) Rahaq2_2753 in NC_016818


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score =  963 bits (3648),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 662/1498 (45%), Positives = 969/1498 (65%), Gaps = 71/1498 (4%)

Query  5     EKSSTLPVNTLSLPKGGGAIQGMGEALGNIGPGGMAGMTVPLPISAGRGYAPALALSYSS  64
             ++S T++V  LSLPKGGGAI GMGEAL   GP+GMA++++PLPISAGRGYAP+L+L+Y+S
Sbjct  2     QNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNS  61

Query  65    GAGNGEFGLGWGCAAASIQRRTSRGVPHYTDEDAFIGASGEVLIPKYGDDGQIVSRNVSR  124
             G+GN+ FGLGW+C+  +I+RRTS GVP+Y + D+F+G+ GEVL+    + GQ   R+ S 
Sbjct  62    GTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESS  121

Query  125   YGQVTLDQTWRVTPYLSQVTAGSDLIERWQ--GTQGGDFWLIHTADGQLHCLGKSPAAQL  182
                + L+ T  VT Y S++ +  + +E WQ   T + DFWLI ++DGQ+H LGK+P A++
Sbjct  122   LQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGATDFWLIYSPDGQVHLLGKNPQARI  181

Query  183   TDPEDASRIAGWMLQESVSPNGEHICYRYKKEDDAGVSLTGNEQQRDHRTFVYLTQVDYG  242
             ++P + ++ A W+L+ S+S+++E+I Y+Y+ ED+AG        +       YL  V+YG
Sbjct  182   SNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCETDELAAHPSATVQRYLQTVHYG  241

Query  243   NQTAQEALYAWTETMPNDSQWLFSLVFDYGERSLDPNAPVACAPATDWLARPDPFSRYDV  302
             N TA + + +     P  S W+F LVFDYGER    +      ++ +WL R D FSRY+ 
Sbjct  242   NLTASDVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNWLCRKDRFSRYEY  301

Query  303   GFEVRCHRLCRQVLMFHRFPS-----ELHAAETLVLRLLLEYQSSATLSQMISAQILAYE  357
             GFE+R +RLCRQ+LMFHR+ +       +   +LV RL+L+Y+ +A +S ++S + ++ E
Sbjct  302   GFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVSVRRVGHE  361

Query  358   TDGTVQSRPPLDLsyspfsvspssEQWQPFPALAGLDDGQQYQLVDLYGEGIPGVLFRQS  417
              + TV + PPL+L+Y PF    +   WQ+   LA ++  Q+ QL+DL GEG+PG+L+++ 
Sbjct  362   DNNTVTALPPLELAYQPFEPEQT-ALWQSMDVLANFNTIQRWQLLDLKGEGVPGILYQDR  420

Query  418   GGWYYRAPVR-GSEGENSVTYGDWQLLPRVPAMQSSSMALMDVNGDGRLDWLVTAPGING  476
              GW YR++ R ++E  N+VT G  QLLP  PA+Q ++ +LMD+NGDG+LDW++T+PG+ G
Sbjct  421   NGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNA-SLMDINGDGQLDWVITGPGLRG  479

Query  477   FFTLNPSGEWSSFTPFSAFPTEFTHPSAQWADLSGSGLTDIALIGPKSVRLYANNREGFT  536
             + + +P G W+ FTP+ A+P E++HP AQ ADL G+GL+D+ LIGPKSVRLY NNR+GFT
Sbjct  480   YHSQHPDGSWTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSVRLYVNNRDGFT  539

Query  537   --RPVQIEQQYTLPVFARDATELVGFSDMLGSGQQHLIRIRYDGITVWPNLGHGKFGEPF  594
               R V    + TLP+ + DA  LV+FSD+LGSGQ HL+ +    +T WPNLGHG+FG+P+
Sbjct  540   EGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWPNLGHGRFGQPI  599

Query  595   VLSTLSFDRQSFDPGRIILADLDGSGGADLLYMHSDYIEVFANLSGNGLAAPMQLALPAG  654
             VL+ +S    SF+P+R+ LADLDGSG ADL+Y+H+D +++F+N SGNG+A P  L++P G
Sbjct  600   VLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGFAKPFTLSFPDG  659

Query  655   IRYDNLCQLNVADSQGLGVASLILSVPYMTPRHWHCDLTSIKPYLLEAVNNNQGNHNQII  714
             +R+D+ CQL+VAD QGLGV SLILSVP M+P+HW+CDLT+ KP LL   NNN G ++ + 
Sbjct  660   LRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSETNNNMGANHTLH  719

Query  715   YRSSAQEWLDEKQQF----PGAVSALPFPIHIVSQTVNTDEISGSVLTQRSRYRKGVYDG  770
             YRSS Q WLDEK         +V  LPFP+H + QT   DEISG+ L    RY  G  DG
Sbjct  720   YRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVTTLRYAHGAWDG  779

Query  771   VMREFYGFGYLEQTDTT--GGVLTSEDTEPLISKSWFHTGREEDESDLYG----------  818
               REF GFGY+EQTD+   +   ++E T P ++KSW+ TG    ++ L +          
Sbjct  780   REREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPAVDNALSAGYWRGDKQAF  839

Query  819   TPYVGRFTVTVNPTWLSQFDASGGKDIALTDVSHENRAMLYRALKGSLLGSEVYG----A  874
             + +  RFT+     W        GKD++LT   ++N   L RALKG  L SE+YG    A
Sbjct  840   AGFTPRFTL-----W------KEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLDGSA  888

Query  875   DNPIPYTQTRQRYQVRLVQPAKGKNASVAMPGLLESVSYNWEQIATDPLIAQQVVMQKDC  934
             ++ IPYT T  R QVR +Q + +  ++V  ++++ES SY+ E+I +DP   Q++ +  D 
Sbjct  889   QQQIPYTVTESRPQVRQLQDG-ATVSPVLWASVVESRSYHYERIISDPQCNQDITLSSDL  947

Query  935   FGATVWQVNINYPRLTKPGVDPYPAILPDTAWASSYDSQQQVLRITEGRASYIDLTDAQA  994
             FG  + QV+++YPR  KP  +PYP  LPDT  ASSYD QQQ+LR+T  ++S  +L + + 
Sbjct  948   FGQPLKQVSVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLIGNEL  1007

Query  995   WRPGISDCQRTNILTYENYALPASGITFEMLSEPDGLLGNSRPRIYAGQSQIFYQPA---  1051
             +  G++D  R++ +TY+   +P  G+ +E L   ++L+++ +PR Y  Q + FY  +   
Sbjct  1008  RVLGLPDGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTDGKNQ  1067

Query  1052  ----VPDLGARVDHVETAELDEASLAAYDGILSRDELIPLLAQAGYVHVPALLPVPGASD  1107
                  P   A +   ETA L E+ L+A+DG ++ DEL  +L+QAGY + P L+P  G  +
Sbjct  1068  TPLKTPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRTG--E  1125

Query  1108  EPVYCIASAYTTYLPASRFYLPETQRQTMLTGATTLTYDDYACCVISSRDAAGNTTSAAY  1167
             + V     +YT Y   ++F  P +QR+++LTG  TL  D   C +  ++DAAG T SA Y
Sbjct  1126  NKVWVARQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSANY  1185

Query  1168  DYRFLKPCKIIDINDNTAEIQLDALGGQMGSSFYGTEQGVMTGFDSVTEYPVPVTLTVEQ  1227
             D RFL P ++ DINDN   I LDALG  +   F G E GV TG+ S  E P +    ++ 
Sbjct  1186  DWRFLTPTQLTDINDNVHLITLDALGRPVTQRFWGIESGVATGYSSSEEKPFSPPNDIDT  1245

Query  1228  AINQAEGSPQHLATVIVDDPFSWMGQVTQQQCGS----GWDTLLEQRFITFEGYIRA-AG  1282
             AIN +  +P  +A  +V  P SWM   +Q+   +      +TL + R+IT +  I A + 
Sbjct  1246  AINLT--GPLPVAQCLVYAPDSWMPLFSQETFNTLTQEEQETLRDSRIITEDWRICALTR  1303

Query  1283  RDWANSTREISGLDASVRGLLADAVTTPVHVATLTADRYPDDDQQQVRISVAFFDGFGRT  1342
             R W +S +    + +++  LL++++  P H  TLT+DRY  D +QQ+R  VAF DGFGR 
Sbjct  1304  RRWLQSQK----ISTPLVKLLTNSIGLPPHNLTLTTDRYDRDSEQQIRQQVAFSDGFGRL  1359

Query  1343  LQQSGKVAPGDAWVRDTAGELVIATGGEPVTTPADPRWAVSGRVEYNNKGLPVRAYQPYF  1402
             LQ S +  +G+AW R+  G LV           +  RWAV+GR EY+NKG  +R+YQPYF
Sbjct  1360  LQASVRHEAGEAWQRNQDGSLVTKVEN------TKTRWAVTGRTEYDNKGQTIRTYQPYF  1413

Query  1403  INDWQYVVDSALRTAGYADTHFYDAPGREIKVVRAGSGYQTRQQYFPWFTVSEDENDT  1460
             +NDW+YV D + R  +YADTH+YD+ GREI+V+ ++ G   + QYFPWFTVSEDENDT
Sbjct  1414  LNDWRYVSDDSARKEAYADTHIYDPIGREIRVI-TAKGWLRQSQYFPWFTVSEDENDT  1470

36) SARI_00654 in NC_010067


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score =  946 bits (3584),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/1471 (44%), Positives = 972/1471 (67%), Gaps = 55/1471 (3%)

Query  1     MGEALGQAGPGGTASMTLPLPVSAGRGFAPSLSLTYSSSAGNSIFGIGWACATLRISRRT  60
             MGEAL  AGP+G A+++LPLP+SAGRG+APSL+L Y+S++GNS FG+GW C+ + I RRT
Sbjct  24    MGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNSGTGNSPFGLGWDCGVMAIRRRT  83

Query  61    SHGVPQYNDNDEFLGPDGEVLVKTISTSQTPNPTTCQQYGSTTLTQTWTVTRYQPRTEGA  120
             S GVP+Y++ D FLGP+GEVLV +++ +  ++  +     +  L  T TVT Y++R E+ 
Sbjct  84    STGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESSLQGINLGATFTVTCYRSRLESH  143

Query  121   FHRLEHWQSEATDG-DFWLLHESTGNLHMLGKTASARISDPHNAAHIAEWLVEESVNPVG  179
             F+RLE WQ+++T++ DFWL+  + G++H+LGK + ARIS+P N  + A+WL+E S+++ +
Sbjct  144   FNRLEYWQPQTTGATDFWLIYSPDGQVHLLGKNPQARISNPLNVNQTAQWLLEASISSHS  203

Query  180   DHIYYCWKAENSSNIREIDKTNQRDCSTQRYLASVQYGCQTPASDLYLWKSDKP-DARWL  238
             ++IYY  +AE+ +     + + +   + QRYL +V+YG  T++  +   ++D P  + W+
Sbjct  204   EQIYYQYRAEDEAGCETDELAAHPSATVQRYLQTVHYGNLTASDVFPTLNGDDPLKSGWM  263

Query  239   FTLIFDYGERSLDPGTAPAFSTTTSWPARQDAFSRYEYGFEIRTHRLCHQVLMFHHF---  295
             F L+FDYGER    +  P F +T +W  R+D FSRYEYGFE+RT+RLC+Q+LMFH++   
Sbjct  264   FCLVFDYGERKNSLSEMPLFKATGNWLCRKDRFSRYEYGFELRTRRLCRQILMFHRLQTL  323

Query  296   PDELKQDN--ALVSRLLLEYNETPVLSQLTSAQTLAYDADGSVLSCPPLELCYS--QPDI  351
             +++ K D+  ALVSRL+L+Y+E +++S L S + ++ + + +V + PPLEL Y   +P+ 
Sbjct  324   SGQAKGDDEPALVSRLILDYDENAMVSTLVSVRRVGHEDNNTVTALPPLELAYQPFEPE-  382

Query  352   SGAQWQQMSSLSGLDS-PPYQLVDLYGEGVPGILWLNGKDWRYRAPCRGETGTDEVVYAD  410
               A WQ M  L+ +++    QL+DL GEGVPGIL  + ++W+YR++ R   + +E+    
Sbjct  383   QTALWQSMDVLANFNTIQRWQLLDLKGEGVPGILYQDRNGWWYRSAQR--QAGEEMNAVT  440

Query  411   WVN---LPQIPALQNASARLIDIDGDGQLDWVIAAPGMAGFFTQQSDKNWSRFTPFSALP  467
             W +   LP  PA+Q+ ++ L+DI+GDGQLDWVI++PG+ G+ +Q++D +W+RFTP+ ALP
Sbjct  441   WGKMQLLPITPAVQDNAS-LMDINGDGQLDWVITGPGLRGYHSQHPDGSWTRFTPLHALP  499

Query  468   EEFFHPQAQFTQLMGSGLIDLAMIGPKSVRLYANEGSAFSTGLNINQDENIELPGPGRDA  527
              E+ HP+AQ+++LMG+GL DL +IGPKSVRLY N+  +F+ G ++ Q  +I LP PG DA
Sbjct  500   IEYSHPRAQLADLMGAGLSDLVLIGPKSVRLYVNNRDGFTEGRDVVQSGDITLPLPGADA  559

Query  528   RELVLFADILGSGQSHLCRIRYNSVTCWPNLGGGRFGSPVQLSLPSPLDSEEQFNPENLL  587
             R LV F+D+LGSGQ+HL  +    VTCWPNLG GRFG P+   LP+  +S   FNP+ + 
Sbjct  560   RKLVAFSDVLGSGQAHLVEVSATQVTCWPNLGHGRFGQPI--VLPGFSQSAASFNPDRVH  617

Query  588   LADTDGSGAPDLIYVQHNQAKVWLNQGGNGFVFGSNIAFPDGVVYDRLCQLTVADIQGNG  647
             LAD DGSG++DLIYV+ ++  +  N++GNGF     ++FPDG+ +D  CQL VAD+QG G
Sbjct  618   LADLDGSGPADLIYVHADRLDIFSNESGNGFAKPFTLSFPDGLRFDDTCQLQVADVQGLG  677

Query  648   MAELVLTVPWPTPTHWHFAFCAQKPWlltgtnnniganttlFYRSSAQEWLDEKQQNPQA  707
             +  L+L+VP  +P HW+  +   KPWLL+ TNNN+GAN TL YRSS Q WLDEK     +
Sbjct  678   VVSLILSVPHMAPHHWRCDLTNAKPWLLSETNNNMGANHTLHYRSSVQFWLDEKAAALAT  737

Query  708   TPA----LPFAMHLLVKTTTEDEVTGNQLSQSIRYRRGVYDGKEREFRGFGYVETEDTND  763
               +    LPF++H L +T TEDE++GN+L  ++RY +G  DG+EREFRGFGYVE  D+++
Sbjct  738   GQTPVCYLPFPVHTLWQTETEDEISGNKLVTTLRYAHGAWDGREREFRGFGYVEQTDSHQ  797

Query  764   DALPVGDDTPVAATLLTKTWFHCGREEDETTLFGTPWRGDTEEITLNATLLTTWQAGEDQ  823
               L+ G+    ++  LTK+W+  G    + +L +  WRGD + ++  +  +T W+ G D 
Sbjct  798   --LAQGNAPERTPPALTKSWYATGLPAVDNALSAGYWRGDKQAFAGFTPRFTLWKEGKDV  855

Query  824   VLNNPDKATRWWMFRALKGTALRSETYGLDTSSVASSPYTTTQQRMQVRLVQGGTM--PV  881
              L   D     W+ RALKG +LRSE YGLD S+    PYT T+ R QVR +Q+G+   PV
Sbjct  856   PLTPEDDHNLYWLNRALKGQPLRSELYGLDGSAQQQIPYTVTESRPQVRQLQDGATVSPV  915

Query  882   VLPVALEQITHHYERLAGDPQVSQQVTLQADGYGYVTRQVSIAYPRRAYHALQPYPANLP  941
             + +  +E  + HYER+ +DPQ +Q++TL +D +G   +QVS+ YPRR   + +PYP  LP
Sbjct  916   LWASVVESRSYHYERIISDPQCNQDITLSSDLFGQPLKQVSVQYPRRNKPTTNPYPDTLP  975

Query  942   DDAWENTYDDQQQKLRLVESLASFIHLENSQTWRLGLPSQQRVNQLEFDS--VPAGGISY  999
             D    ++YDDQQQ LRL    +S  HL  ++ + LGLP   R + + +D+  VP +G++ 
Sbjct  976   DTLFASSYDDQQQLLRLTCRQSSWHHLIGNELRVLGLPDGTRSDAFTYDAKQVPVDGLNL  1035

Query  1000  ETLRADNGLLSAEQTR-YLTQQNEIIYTS----TPLDL---RALVHYQRTAVLDETALKA  1051
             ETL A+N+L++ ++ R YL QQ   +YT     TPL     +AL+ +  TAVL E+ L A
Sbjct  1036  ETLCAENSLIADDKPREYLNQQR-TFYTDGKNQTPLKTPTRQALIAFTETAVLTESLLSA  1094

Query  1052  YEGITIPAEYS--FDKLGYVNTPALFSFTTEADLWAVEHSFTLYNDVSQFSTVASQQSTR  1109
             ++G   P E +  + + GY + P LF+ T E  +W   +++T Y   +QF    +Q+++ 
Sbjct  1095  FDGGITPDELPGILTQAGYQQEPYLFPRTGENKVWVARQGYTDYGTEAQFWRPVAQRNSL  1154

Query  1110  LVGAITCQYDSHYLVPISQQDVLGNTVTMEYDYRFLSPWRTTDINNNYQECQLDALGRLL  1169
             L G +T + D+HY V    QD  G TV+ +YD RFL+P + TDIN+N +   LDALGR +
Sbjct  1155  LTGKMTLKWDTHYCVITQTQDAAGLTVSANYDWRFLTPTQLTDINDNVHLITLDALGRPV  1214

Query  1170  ATSVYGTENGGQAVGFAKIADYPVSSSLTVEQAIAMATTVGYLQQLATINVTDMFSWMGC  1229
             +    G E+G  A G++   + P S++  ++ AI ++  +   Q L  +   D  SWM  
Sbjct  1215  TQRFWGIESGV-ATGYSSSEEKPFSPPNDIDTAINLTGPLPVAQCL--VYAPD--SWMPL  1269

Query  1230  VSSDQANSVTADGWSTLLKNRFITFTGHIRS-SGHLW-ARKNPQHPLANLLTEATRNPIH  1287
              S +  N++T +   TL  +R+IT   +I + + + W   ++   PL +LLT++   P H
Sbjct  1270  FSQETFNTLTQEEQETLRDSRIITEDWRICALTRRRWLQSQKISTPLVKLLTNSIGLPPH  1329

Query  1288  SVTLTADNYPATFDPDDSTKRLQQTGISLSYSDGFGRALQQCVLFPDGKAWHRESNGEIS  1347
             ++TLT+D Y       DS ++++Q    +++SDGFGR LQ  V    G AW+R+ +G + 
Sbjct  1330  NLTLTTDRY-----DRDSEQQIRQ---QVAFSDGFGRLLQASVRHEAGEAWQRNQDGSLV  1381

Query  1348  TTEVDASPRWAVSGRTEYDNKGQAVRNYQPFFLDDWHYVVDAAMRTNGYSDTHYYDATGR  1407
             T   ++  RWAV+GRTEYDNKGQ++R YQP+FL+DW+YV D + R ++Y+DTH YD+ GR
Sbjct  1382  TKVENTKTRWAVTGRTEYDNKGQTIRTYQPYFLNDWRYVSDDSARKEAYADTHIYDPIGR  1441

Query  1408  NIRTVTAKGYLRRNTYYAWFTVAEDENDTVG  1438
             +IR +TAKG LR++ Y++WFTV+EDENDT +
Sbjct  1442  EIRVITAKGWLRQSQYFPWFTVSEDENDTAA  1472

37) Rahaq2_2747 in NC_016818


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score =  933 bits (3536),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 646/1494 (44%), Positives = 963/1494 (65%), Gaps = 59/1494 (3%)

Query  13    NQSRSVAVTPPSLPKGGGALPGMGEALGNIGPSGLASLSIPLPVSAGRGYGPDIGLSYSS  72
             ++S++ +VT  SLPKGGGA+ GMGEAL   GP G+A+LS+PLP+SAGRGY+P + L+Y+S
Sbjct  2     QNSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNS  61

Query  73    SAGNGVFGLGWGVNIPYISRRTSQGVPQYTGQDEFLAPGGEVLMPERDENGQVITTTCAA  132
             ++GN+ FGLGW+  +  I RRTS GVP+Y   D FL+P GEVL+   +E GQ    + ++
Sbjct  62    GTGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESS  121

Query  133   YGEIQLNETWQVVRYSPRIEGAFTRIESWQHDTA---QFWLLHGTDGQLHCFGKNANTQI  189
                I+L  T  V  Y +R+E+ F R+E WQ +T+   +FWL+ + DGQ+H +GKN++++I
Sbjct  122   LQGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGATDFWLIYSPDGQVHLLGKNPQARI  181

Query  190   ADPDNTTHIAVWMLEESVSPGGEHIHYRYQPETTDGIAEGSVEASRDCRSQRYLVGIDYS  249
             ++P N  + A W+LE S+S+ +E+I Y+Y++E   G   + + A      QRYL  ++Y+
Sbjct  182   SNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCETDELAAHPSATVQRYLQTVHYG  241

Query  250   NVVAS---PDLYAWQDLSASQHWLFTLVFDYGERGMDPDTAPLFTATGPWTLRQDPFSRY  306
             N+ AS   P L + + L ++  W+F LVFDYGER       PLF ATG W  R+D FSRY
Sbjct  242   NLTASDVFPTLNGDDPLKSG--WMFCLVFDYGERKNSLSEMPLFKATGNWLCRKDRFSRY  299

Query  307   DYGFEIRTHRLCQQVLMFHHFP-----DELAEEDTLVSCLRLEYQQDPRLTVLVGAQSMA  361
             +YGFE+RT+RLC+Q+LMFH++          +E +LVS L L+Y++++ ++ LV+ + ++
Sbjct  300   EYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVSVRRVG  359

Query  362   WDDAGTVQCVPPLDLRYNTFEPRLDADQWQPFDAMPGVDESPFYQLVDLFGEGLPGILYR  421
              +D  TV  +PPL+L Y+ FEP  ++  WQ+ D ++  +     QL+DL GEG+PGILY+
Sbjct  360   HEDNNTVTALPPLELAYQPFEPE-QTALWQSMDVLANFNTIQRWQLLDLKGEGVPGILYQ  418

Query  422   AGQQWRYRAPERGSAEGDSVSYSAwqplpwqpslqpAKTRLMDITGNGKLDWLVTQPGLA  481
               + W+YR+++R ++E  +    +   L    +    ++ LMDI G+G+LDW++T PGL 
Sbjct  419   DRNGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITGPGLR  478

Query  482   GFFSLSPDAQWSNFTAFNTLPSEFFHTQAQLVDLTGDGLSDLAMIGPKSVRFYGNLREGF  541
             G+ S  PD+ W+ FT++++LP E+ H +AQL DL G GLSDL +IGPKSVR+Y N R+GF
Sbjct  479   GYHSQHPDGSWTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSVRLYVNNRDGF  538

Query  542   APALTVSQRND--LTVAGRDARELVAFSDVLGSGQLHLVRIRYNDITVWPNLGGGVFAAP  599
             + +  V Q  D  L ++G DAR LVAFSDVLGSGQ HLV +   ++T WPNLG G F+ P
Sbjct  539   TEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWPNLGHGRFGQP  598

Query  600   FQLAALDFDEQTFNPEQVLLADLDGSGTADLLYRESDQLRIWFNQSGNSLSAPVTLPLPE  659
             + L+++     +FNP++V LADLDGSG ADL+Y ++D+L I  N+SGN+++ P TL++P+
Sbjct  599   IVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGFAKPFTLSFPD  658

Query  660   GTRYDRLCQVSAADVQGQGMASLIFSLPHPTPQHWRYDFATAKPWLLSGTNNNMGGDTSL  719
             G R+D  CQ+  ADVQG G+ SLI+S+PH +P+HWR D++ AKPWLLS TNNNMG++ +L
Sbjct  659   GLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSETNNNMGANHTL  718

Query  720   IYRSSAQEWLDEKKE----NTQAVSQLPFPVHIVSQVVATDEITGNILTQQYRYRKGVYD  775
              YRSS Q WLDEK         +V  LPFPVH + Q  + DEI+GN L    RY  G  D
Sbjct  719   HYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVTTLRYAHGAWD  778

Query  776   GNEREFRGFGYLELQDSQRDWASDGSPISFTPPLLTKGWYHTGQQQDEASLYGTPY--QD  833
             G EREFRGFGY+E  DS++   ++G++   TPP LTK+WY TG    + +L ++ Y   D
Sbjct  779   GREREFRGFGYVEQTDSHQ--LAQGNAPERTPPALTKSWYATGLPAVDNAL-SAGYWRGD  835

Query  834   PLAFAISPTYFSEYSE-EDEMDIPLQADDTDS-WWLYRALKGQLLRSESYGLDGGDQENI  891
               AFA    + + ++   +  D+PL ++D ++  WL RALKGQ LRSE YGLDG+ Q++I
Sbjct  836   KQAFA---GFTPRFTLWKEGKDVPLTPEDDHNLYWLNRALKGQPLRSELYGLDGSAQQQI  892

Query  892   PYQVSLNRYLVRRVQVACSSQPCVALVAPLEQWNWGYERLAVDPQVSQHVTIQRDEFATP  951
             PY V+ +R  VR++Q + +  P V   + +E ++  YER+  DPQ +Q++T+  D F+ P
Sbjct  893   PYTVTESRPQVRQLQDGATVSP-VLWASVVESRSYHYERIISDPQCNQDITLSSDLFGQP  951

Query  952   LWSVNLNYPRRDQPADNPYPDTLPPTTWQSSYDDQQTFLRISEQRCSVYHLVDSQAWRLG  1011
             L  V+++YPRR++P+ NPYPDTLP T   SSYDDQQ +LR++ ++ S  HL++++ + LG
Sbjct  952   LKQVSVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHHLIGNELRVLG  1011

Query  1012  LAHQQRQN---FLSQPAWRGGGLRYEDLISPDGLLGHTQPRTFAGQSEVIYQGG------  1062
             L++  R +   + ++     +GL  E L + ++L+++ +PR +  Q   +Y +G      
Sbjct  1012  LPDGTRSDAFTYDAKQV-PVDGLNLETLCAENSLIADDKPREYLNQQRTFYTDGKNQTPL  1070

Query  1063  DAPDFTALVDHCVVaelddaalaaydgalESEALQNMLLEAGYIQTERVLEAEGADEALV  1122
              +P   AL+     A L ++ L+A+DG++ ++ L  +L +AGY Q   ++   G +   V
Sbjct  1071  KTPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRTGENK--V  1128

Query  1123  WAIEQGFTTFKALDGFYRPVTVQSTVLTGPTTFVWDDYNCLIVAVTDALGNTMFSAADYR  1182
             W   QG+T + +   F RPV+ ++++LTG  T+ WD   C+I    DA G T+ +  D R
Sbjct  1129  WVARQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSANYDWR  1188

Query  1183  FLQPWQGVDINDNTREVQRDALGNLIATTFYGSGQGVATGFDSLMSSPVTPGQSVADVIA  1242
             FL P Q  DINDN + +  DALG  ++  F G   GVATG+ S    P +P + +   I 
Sbjct  1189  FLTPTQLTDINDNVHLITLDALGRPVTQRFWGIESGVATGYSSSEEKPFSPPNDIDTAIN  1248

Query  1243  SAGQSIQPQASRVAYDLFSWMGQVIPLSF---TSDEWQRLVSLRFLTPQ-GFIRSAGHQW  1298
              +G    P A  + Y   SWM      +F   T +E + L   R++T +  +   + ++W
Sbjct  1249  LTGP--LPVAQCLVYAPDSWMPLFSQETFNTLTQEEQETLRDSRIITEDWRICALTRRRW  1306

Query  1299  LRHQKTATGLSAATRQILGEAKISPVQVATLTADRYPDDCAQQVRVAVAYQDGFGRPLQA  1358
             L+ QK +T L     ++L ++   P +  TLT+DRY  D  QQ+R  VA+ DGFGR LQA
Sbjct  1307  LQSQKISTPLV----KLLTNSIGLPPHNLTLTTDRYDRDSEQQIRQQVAFSDGFGRLLQA  1362

Query  1359  CGKVSPGEAWQRDADGELVVDENGQPVIIDAATRWAVSGRVEYDNKGLVVRQYQPGFVDD  1418
               +  +GEAWQR+ DG LV        + ++ TRWAV+GR EYDNKG  +R YQP F++D
Sbjct  1363  SVRHEAGEAWQRNQDGSLVTK------VENTKTRWAVTGRTEYDNKGQTIRTYQPYFLND  1416

Query  1419  WQYVKDCAMRAEGYADDHYYDALGRENKVITAKGYLRKKSYYPWFVVSEDENDT  1472
             W+YV D + R E+YAD H YD++GRE +VITAKG LR+  Y+PWF VSEDENDT
Sbjct  1417  WRYVSDDSARKEAYADTHIYDPIGREIRVITAKGWLRQSQYFPWFTVSEDENDT  1470

38) tcaC in NC_014228


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score =  878 bits (3326),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 622/1536 (41%), Positives = 961/1536 (63%), Gaps = 93/1536 (6%)

Query  6     SSDNLRLIPPTLPKGGGSLQGMPTTPGAMGPNGQAGFQLPFPVSAGRGYSPALSLSYQGG  65
             +S+ + +   +LPKGGG++ GM  +  + GP+G A++ LP+P+SAGRGY+P+L+L+Y++G
Sbjct  3     NSQTFSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNSG  62

Query  66    SGNGSFGVSWHCDVPAIRRRTHRGVPTYTDQDTFLGPDGEALVPEQDAQGNPITTSVNTW  125
             +GN++FG++W+C+V AIRRRT  GVP Y + DTFLGP+GE LV   +  G++   S ++ 
Sbjct  63    TGNSPFGLGWDCGVMAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNEAGQADIRSESSL  122

Query  126   HDRKLPQIWQVTRYFPRVEGDFARIERWQ--VTGEADFWLVHHTNGEVLCLGKTAQARIA  183
             ++ +L     VT Y +R+E++F R+E WQ   TG +DFWL+   +G+V  LGK +QARI+
Sbjct  123   QGINLGATFTVTCYRSRLESHFNRLEYWQPQTTGATDFWLIYSPDGQVHLLGKNPQARIS  182

Query  184   DSAEPKVRIAAWLAEESVSPTGEHIYYQYINAADAGVRD---PAGRDTHNQRTLQAVLYG  240
             ++ + + + A WL E S+S+ +E+IYYQY    +AG      +A   +  QR LQ+V YG
Sbjct  183   NPLNVN-QTAQWLLEASISSHSEQIYYQYRAEDEAGCETDELAAHPSATVQRYLQTVHYG  241

Query  241   NVTAQSDLFLWDGDAEPARQDWLFTLVLDYGARSMDSTVPPALTLPDKATWPVRQDAFST  300
             N+TA SD+F    + +P + +W+F LV+DYG R   ++++    +   + W  R+D FS 
Sbjct  242   NLTA-SDVFPTLNGDDPLKSGWMFCLVFDYGERK--NSLSEMPLFKATGNWLCRKDRFSR  298

Query  301   YETGFEVRTHFLCRQVLMFHHFPTELGEA-----ATLVNRLLITYDENPVLSRLVSVQTL  355
             YE GFE+RT+ LCRQ+LMFH++ T  G+A     ++LV+RL++ YDEN+++S LVSV+ +
Sbjct  299   YEYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVSVRRV  358

Query  356   AYEPDDTHTLKCLPPTTIDYTPFTLKTGAGNWHSM-TLPDSLGLASYHLIDLYGEGLSGL  414
             +   +D +T+  LPP  + Y PF     ++ W+SM  L++   +   +L+DL GEG++G+
Sbjct  359   G--HEDNNTVTALPPLELAYQPFE-PEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPGI  415

Query  415   LYQEGAGWYYRPPMRDLSPGAESDAVVFGDWEALPTIPSMQQGTNVSLLDINGDGRLEWL  474
             LYQ+  GW YR++ R+  +G E +AV  G  + LP  P++Q+  N SL+DINGDG+L+W+
Sbjct  416   LYQDRNGWWYRSAQRQ--AGEEMNAVTWGKMQLLPITPAVQD--NASLMDINGDGQLDWV  471

Query  475   IIQPDGPAGYYILQANRTWSAFTPLTQLPLEYLHPDVTFADLHGGGLPDLAMIGPHSVRL  534
             I  P G  GY   +++ +W+ FTPL  LP+EY HP   +ADL G+GL+DL +IGP SVRL
Sbjct  472   ITGP-GLRGYHSQHPDGSWTRFTPLHALPIEYSHPRAQLADLMGAGLSDLVLIGPKSVRL  530

Query  535   YINECTGFDRGRMVMQDTDINLPMKGRDQQELVAFCDMLGSGQMHLVSVRHDRVLCWPNL  594
             Y+N+  GF  GR V+Q  DI LP+ G D + LVAF D+LGSGQ HLV V   +V CWPNL
Sbjct  531   YVNNRDGFTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHLVEVSATQVTCWPNL  590

Query  595   GNGHFGAPLTLCDTLPFDAVRFNPRQIYLVDVDGSGTTDLVYADPAGIHLFLNQAGNTLS  654
             G+G+FG P+ L   ++  A  FNP ++ L D+DGSG +DL+Y ++  +++F N++GN ++
Sbjct  591   GHGRFGQPIVL-PGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDIFSNESGNGFA  649

Query  655   SPLCLPYPDGVAYDQLSQLSFADLSGQGTVSCVLTQYARGADLHPLSWRYDLSSRKPYLL  714
              P+ L++PDG+ +D+  QL  AD+ G G VS +L+     +++ P  WR DL++ KP LL
Sbjct  650   KPFTLSFPDGLRFDDTCQLQVADVQGLGVVSLILS----VPHMAPHHWRCDLTNAKPWLL  705

Query  715   TTMDNQCGARTILTHRSSAQEWLDEKQGSPDASPG----IPFPLLVVSRVMQQDDLTGNT  770
             +  +N+ GA   L  RSS Q WLDEK ++  ++      +PFP+  + +   +D+++GN 
Sbjct  706   SETNNNMGANHTLHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNK  765

Query  771   LVQTYRYRRGLWDGVEREFRGFGYVEEQDGEESASALA---VCPLRICSWYHTGRQEDTQ  827
             LV T RY +G WDG EREFRGFGYVE+ D+++ A + A     P    SWY TG     +
Sbjct  766   LVTTLRYAHGAWDGREREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWYATGLPAVDN  825

Query  828   VLYGRPY--VDSDAFTLGDTRLTRWTGDADDGHDAAFTPDTQTG-WWLHRALKGTLLRRE  884
              L +  Y   D +AF+    R+T W     +G D ++TP+ +    WL+RALKG  LR E
Sbjct  826   AL-SAGYWRGDKQAFAGFTPRFTLWK----EGKDVPLTPEDDHNLYWLNRALKGQPLRSE  880

Query  885   HYGLDGTPAAAVPYTVSQSRCQVRLVQAGDM--PVVLPLSAGEITYHYERVASDPQVTQS  942
              YGLDG++   +PYTV++SR QVR +Q G    PV+ +      +YHYER+ SDPQ  Q 
Sbjct  881   LYGLDGSAQQQIPYTVTESRPQVRQLQDGATVSPVLWASVVESRSYHYERIISDPQCNQD  940

Query  943   IPLQYDSYGHGLWTINVNYPRRLTADSPNPYTATALPDSAWSATFDEQQTLLRLTENRIQ  1002
             I L  D +G+ L  ++V+YPRR    + NPY  T LPD+  ++++D+QQ LLRLT  +  
Sbjct  941   ITLSSDLFGQPLKQVSVQYPRR-NKPTTNPYPDT-LPDTLFASSYDDQQQLLRLTCRQSS  998

Query  1003  MRNQPDAQAWVLGIPEITRQNMLTYPGSQSPKQGLTLEALSTSDGLLGSNQPRVLVGLIR  1062
              ++  + + +VLG+P+ TR + +TY + Q P +GL LE+L + ++L++ ++PR  +   R
Sbjct  999   WHHLIGNELRVLGLPDGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQR  1058

Query  1063  HHYHSNASQ-----PKNLILPAHTETALLRDEDLKAYDGVLTAEQRQKWLTEGGYHTMPA  1117
               Y    +Q     P    L A TETA+L +  L A+DG +T+++    LT++GY+  P 
Sbjct  1059  TFYTDGKNQTPLKTPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPY  1118

Query  1118  LLSAPGVTDEPAVWAGNTGFMTYLGAPHFWRPHTQTPARLPGADGVSPVLTATWDSYDCC  1177
             L++  G   E  VW +  G+  Y   ++FWRP +Q  + L G       +T  WD+  C 
Sbjct  1119  LFPRTG---ENKVWVARQGYTDYGTEAQFWRPVAQRNSLLTGK------MTLKWDTHYCV  1169

Query  1178  LLSSMDAYGNTTQADIDYRFLIPRRVTDINDNRHEVQLDALGRVVATSRYGTELGDNGTS  1237
             +  + DA G T  A+ D RFL P ++TDINDN H + LDALGR V+    G E      S
Sbjct  1170  ITQTQDAAGLTVSANYDWRFLTPTQLTDINDNVHLITLDALGRPVTQRFWGIE------S  1223

Query  1238  SVNVGFSPLNTHPAPVQDTVEAAVAHALAVNQGKATQPQATRVVYDVLCRMGQLTTTHLK  1297
             +V  G+S+ +  P +  + +++A+  +       +  P A  +VY    +M  ++   ++
Sbjct  1224  GVATGYSSSEEKPFSPPNDIDTAINLT-------GPLPVAQCLVYAPDSWMPLFSQETFN  1276

Query  1298  QVTASESDIAALHLRLQALRFITAQGHI--LSPGWQWVDSDKVTEGVPDALREVMKSVPR  1355
              +T  E +       L+  R+IT + +I  L+  ++W++S+K++     +L  ++ +   
Sbjct  1277  TLTQEEQET------LRDSRIITEDWRICALTR-RRWLQSQKIS----TPLVKLLTNSIG  1325

Query  1356  QPIHYAILAADAY-PDNPQQVNVQVAYRDGFGRALQGTALVPAGSAYERTDDGELAFEDG  1414
              P H   L++D Y  D+ QQ+  QVA+ DGFGR LQ++    AG A +R +DG L     
Sbjct  1326  LPPHNLTLTTDRYDRDSEQQIRQQVAFSDGFGRLLQASVRHEAGEAWQRNQDGSLVTKVE  1385

Query  1415  HLVTVPAEPRWTVTGRVEYNLKGQTVRVYQPYFVNNWRAVADTALRAHGYADTHYYDATG  1474
             +     +  RW+VTGR EY+ KGQT+R YQPYF+N+WR V+D + R ++YADTH YD+ G
Sbjct  1386  N-----TKTRWAVTGRTEYDNKGQTIRTYQPYFLNDWRYVSDDSARKEAYADTHIYDPIG  1440

Query  1475  REIRVVTAKGEVRRQGYTPWFIVAEDENDTASEIMA  1510
             REIRV+TAKG +R+  Y PWF V+EDENDTA++ + 
Sbjct  1441  REIRVITAKGWLRQSQYFPWFTVSEDENDTAADALV  1476

39) Q7S_09720 in NC_017047


> AF346500|52|G49|16416930|AAL18487.1|Photorhabdus_luminescens_W14|+|89002..93432|tcdB1|-|TcdB1
Length=1476

 Score =  708 bits (2677),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 505/1156 (44%), Positives = 753/1156 (66%), Gaps = 54/1156 (4%)

Query  1     MLLEYQSSAILSQISGAQILAYETDGTVQSRPPLDLSYSPFSVTASPDLWQPFPALAGLD  60
             ++L+Y+ +A++S + + + ++ E + TV + PPL+L+Y PF    ++ LWQ+   LA ++
Sbjct  339   LILDYDENAMVSTLVSVRRVGHEDNNTVTALPPLELAYQPFEPEQTA-LWQSMDVLANFN  397

Query  61    DGQQYQLVDLYGEGIPGVLFRQSTGWFYRAPVRGSDGE-NSVTYGDWQLLPQVPAMQPSS  119
               Q+ QL+DL GEG+PG+L+++  GW YR++ R ++ E N+VT G  QLLP  PA+Q ++
Sbjct  398   TIQRWQLLDLKGEGVPGILYQDRNGWWYRSAQRQAGEEMNAVTWGKMQLLPITPAVQDNA  457

Query  120   MALMDVNGDGRLDWLVTAPGINGFFTLNPSGEWSSFTPFSAFPTEFSHPSAQWADLTGSG  179
              +LMD+NGDG+LDW++T+PG+ G+ + +P G W+ FTP+ A+P E+SHP AQ ADL G+G
Sbjct  458   -SLMDINGDGQLDWVITGPGLRGYHSQHPDGSWTRFTPLHALPIEYSHPRAQLADLMGAG  516

Query  180   LTDIALIGPKSVRLYANNRMGFTPPAEIEQ--QYTLPVFARDATELVAFSDMLGSGQQHL  237
             L+D+ LIGPKSVRLY NNR GFT   ++ Q  + TLP+ + DA  LVAFSD+LGSGQ HL
Sbjct  517   LSDLVLIGPKSVRLYVNNRDGFTEGRDVVQSGDITLPLPGADARKLVAFSDVLGSGQAHL  576

Query  238   IRIRHDGITVWPNLGQGKFGEPFVLSSLSFDRQSFDPSRIIladldgaggadllYMHSDY  297
             + +    +T WPNLG+G+FG+P+VL+++S    SF+P R+ LADLDG+G ADL+Y+H+D 
Sbjct  577   VEVSATQVTCWPNLGHGRFGQPIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADR  636

Query  298   IEIFANLSGNGLAAPVQIPLPAGIRYDNLCQLNVADSQGLGVASLILSVPYMTPQHWHCD  357
             ++IF+N SGNG+A P  +++P G+R+D+ CQL+VAD QGLGV SLILSVP M+P+HW+CD
Sbjct  637   LDIFSNESGNGFAKPFTLSFPDGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCD  696

Query  358   LTSIKPYLLESVNNNQGRHNQIIYRSSAQEWLDEK--QLFPGAVSA--LPFPIHIVSQTV  413
             LT+ KP LL   NNN G ++ + YRSS Q WLDEK   L  G  +   LPFP+H + QT 
Sbjct  697   LTNAKPWLLSETNNNMGANHTLHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTE  756

Query  414   NTDEISGSVLTKRCRYRKGVYDGIMREFYGFGYLEQTDA--IGGGQTSEDTEPLISKSWF  471
               DEISG+ L    RY  G  DG  REF GFGY+EQTD+  ++ G+++E T P ++KSW+
Sbjct  757   TEDEISGNKLVTTLRYAHGAWDGREREFRGFGYVEQTDSHQLAQGNAPERTPPALTKSWY  816

Query  472   HTGHEEDENNLYGAPY--TGRFSVVVNPTRLSEFDAINGKDIVLSDVSRESRAWLYRALK  529
              TG    +N L +A Y   ++ +      R++     +GKD+ L+    ++  WL RALK
Sbjct  817   ATGLPAVDNAL-SAGYWRGDKQAFAGFTPRFTLWK--EGKDVPLTPEDDHNLYWLNRALK  873

Query  530   GSLLCSEVYGVNNP----IPYTQTTQRYQVRLVQPARGKIAAVAMPGLLESVSYNWEQIA  585
             G  L SE+YG++ +    IPYT T  R QVR +Q + + +++V  ++++ES SY+ E+I 
Sbjct  874   GQPLRSELYGLDGSAQQQIPYTVTESRPQVRQLQDG-ATVSPVLWASVVESRSYHYERII  932

Query  586   TDPVIGQQVIMQKDRYGATVWQVNINYPRLTKPAVDPYPATLPDTAWASSYDSQQQVLRI  645
             +DP   Q++ +  D +G  + QV+++YPR  KP+ +PYP TLPDT  ASSYD QQQ+LR+
Sbjct  933   SDPQCNQDITLSSDLFGQPLKQVSVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRL  992

Query  646   TEGRESYIDLTDPQAWRPGISDCQRTNILTYENYTLPANGITFEMLSEPDGLLGNSRPRI  705
             T  + S  +L + + +  G++D  R++ +TY+   +P +G+ +E L   ++L+++ +PR 
Sbjct  993   TCRQSSWHHLIGNELRVLGLPDGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPRE  1052

Query  706   YAGQSQIFYQPA-------VPDLGARVDHVETAELDEVSLAAYDGILSRDELIPLLAEAG  758
             Y  Q + FY  +        P   A +   ETA L E  L+A+DG ++ DEL  +L++AG
Sbjct  1053  YLNQQRTFYTDGKNQTPLKTPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAG  1112

Query  759   YVHVPALLPVAGASDAAVYCIASAYTTYLPASRFYLPETQRQTLLTGVTTLTYDVYGCCL  818
             Y + P L+P +G  +  V     +YT Y   ++F  P +QR++LLTG  TL  D   C +
Sbjct  1113  YQQEPYLFPRTG--ENKVWVARQGYTDYGTEAQFWRPVAQRNSLLTGKMTLKWDTHYCVI  1170

Query  819   ISSRDPAGNTTSATYDYRFLKPTKIIDINDNTAEVQLDSLGRQIATTFYGTEQGVMTGFD  878
               ++D+AG T SA YD RFL PT++ DINDN   + LD+LGR ++  F G E GV TG+ 
Sbjct  1171  TQTQDAAGLTVSANYDWRFLTPTQLTDINDNVHLITLDALGRPVTQRFWGIESGVATGYS  1230

Query  879   SVTEYPVPVTLTVEQAISQAGTSPQHLATLIVEDPFSWMGKVTKQQ----CGSAWNILLE  934
             S  E P +    ++ AI+ +G  P  +A  +V  P SWM   +++          + L +
Sbjct  1231  SSEEKPFSPPNDIDTAINLTGPLP--VAQCLVYAPDSWMPLFSQETFNTLTQEEQETLRD  1288

Query  935   QQFIT----FAGYIRAAGRRWAHSATVISGldasarrlladaMTTPVHLATLTADRYPDD  990
              ++IT    + +  R   RRW +S  + +       +LL++++  P H  TLT+DRY  D
Sbjct  1289  SRIITEDWRICALTR---RRWLQSQKISTP----LVKLLTNSIGLPPHNLTLTTDRYDRD  1341

Query  991   DQQQVRISVAFFDGFGRTLQQSGKVAPGEAWVRDTEGELVISAGGEPVTVPANPRWAVSG  1050
              +QQ+R  VAF DGFGR LQ S +  +GEAW R+ +G LV           ++ RWAV+G
Sbjct  1342  SEQQIRQQVAFSDGFGRLLQASVRHEAGEAWQRNQDGSLVTKVEN------TKTRWAVTG  1395

Query  1051  RVEYNNKGLPVRAYQPYFINDWQYVVDSAMRTAGYADTHFYDAPGREIKVVRAGSGYQIR  1110
             R EY+NKG  +R+YQPYF+NDW+YV D + R  +YADTH+YD+ GREI+V+ ++ G   +
Sbjct  1396  RTEYDNKGQTIRTYQPYFLNDWRYVSDDSARKEAYADTHIYDPIGREIRVI-TAKGWLRQ  1454

Query  1111  QQYFPWFTVSEDENDT  1126
              QYFPWFTVSEDENDT
Sbjct  1455  SQYFPWFTVSEDENDT  1470