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Homologs of SESS1635_04950 gene of JQ747540

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) ECO26_5273
( YP_003232155.1 )

T3SS component protein

NC_013361
(Escherichia coli 11368)

1e-18

2) ECO103_3616
( YP_003223473.1 )

T3SS component

NC_013353
(Escherichia coli 12009)

1e-18

3) ROD_29911
( YP_003366500.1 )

T3SS component

NC_013716
(Citrobacter rodentium ICC168)

5e-16

• Sequence Alignments

1) ECO103_3616 in NC_013353


> JQ747540|57|G52|397782039|AFO66417.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|47313..47735|-|SESS1635_04950|putative 
LEE-encoded putative type III secretion system factor
Length=140

 Score = 86.3 bits (308),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 46/113 (41%), Positives = 72/113 (64%), Gaps = 0/113 (0%)

Query  26   EESFNDIFNRIKKRTPDTSFIRMASLWKRLFYAPGQRRRYFEQGERSFSIICGKLRGIVL  85
            E  F++++N+ K   PD  F+++  LWK  FY+P   RR+  Q +RSFS+I G+L+G++L
Sbjct  27   EKHFHEMLNKCKWYEPDVVFLKLVELWKNKFYSPYLLRRFMLQKQRSFSLINGRLHGVIL  86

Query  86   TIKCSNGTIYLSITLNPNNKNHIFLYHKKNYICDKLKEIFPDEPIEFSIEYEN  138
             I      I LS+ LNPNN  H +LY +   I ++L+++FP + I FS+ YE 
Sbjct  87   RIDTDGNNILLSLILNPNNIYHSLLYYREREISERLNQLFPLDNIIFSVTYET  139

2) ECO26_5273 in NC_013361


> JQ747540|57|G52|397782039|AFO66417.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|47313..47735|-|SESS1635_04950|putative 
LEE-encoded putative type III secretion system factor
Length=140

 Score = 86.3 bits (308),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 46/113 (41%), Positives = 72/113 (64%), Gaps = 0/113 (0%)

Query  26   EESFNDIFNRIKKRTPDTSFIRMASLWKRLFYAPGQRRRYFEQGERSFSIICGKLRGIVL  85
            E  F++++N+ K   PD  F+++  LWK  FY+P   RR+  Q +RSFS+I G+L+G++L
Sbjct  27   EKHFHEMLNKCKWYEPDVVFLKLVELWKNKFYSPYLLRRFMLQKQRSFSLINGRLHGVIL  86

Query  86   TIKCSNGTIYLSITLNPNNKNHIFLYHKKNYICDKLKEIFPDEPIEFSIEYEN  138
             I      I LS+ LNPNN  H +LY +   I ++L+++FP + I FS+ YE 
Sbjct  87   RIDTDGNNILLSLILNPNNIYHSLLYYREREISERLNQLFPLDNIIFSVTYET  139

3) ROD_29911 in NC_013716


> JQ747540|57|G52|397782039|AFO66417.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|47313..47735|-|SESS1635_04950|putative 
LEE-encoded putative type III secretion system factor
Length=140

 Score = 77.1 bits (273),  Expect = 5e-16, Method: Compositional matrix adjust.
 Identities = 46/113 (41%), Positives = 74/113 (66%), Gaps = 0/113 (0%)

Query  26   EENFNDILNRMKKRSPDTLFIRMASLWKKLFYFPGKRRRYFEQEEHSFSIICGRLRGIVV  85
            E +F+++LN+ K   PD +F+++  LWK+ FY P   RR+  Q ++SFS+I GRL+G+++
Sbjct  27   EKHFHEMLNKCKWYEPDVVFLKLVELWKNKFYSPYLLRRFMLQKQRSFSLINGRLHGVIL  86

Query  86   TFKCSKGIIYLSIKVNPNNSKHILLYNKKEYIFDKLKELFPDEAIEFSIEYEN  138
             +      I LS+ +NPNN  H LLY +   I ++L++LFP + I FS+ YE 
Sbjct  87   RIDTDGNNILLSLILNPNNIYHSLLYYREREISERLNQLFPLDNIIFSVTYET  139