Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of int gene of AF440523

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) Plav_3466
( YP_001414722.1 )

integrase family protein

NC_009719
(Parvibaculum lavamentivorans DS-1)

0.0

2) NH44784_009041
( YP_008028005.1 )

Integrase

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

0.0

3) intZ
( YP_006370231.1 )

site-specific recombinase, phage integrase family

NC_017956
(Tistrella mobilis KA081020-065)

0.0

4) PADK2_11745
( YP_006482334.1 )

integrase

NC_018080
(Pseudomonas aeruginosa DK2)

0.0

5) AXYL_01141
( YP_003977200.1 )

integrase

NC_014640
(Achromobacter xylosoxidans A8)

0.0

6) NH44784_008341
( YP_008027936.1 )

Integrase

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

0.0

7) Tola_2486
( YP_002893666.1 )

integrase family protein

NC_012691
(Tolumonas auensis DSM 9187)

0.0

8) NH44784_010121
( YP_008028112.1 )

Integrase

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

0.0

9) int
( YP_001100320.1 )

integrase

NC_009138
(Herminiimonas arsenicoxydans )

0.0

10) XCV2298
( YP_364029.1 )

phage-related integrase

NC_007508
(Xanthomonas campestris 85-10)

0.0

11) intS
( NP_637474.1 )

phage-related integrase

NC_003902
(Xanthomonas campestris ATCC 33913)

0.0

12) XC_2002
( YP_243085.1 )

phage-related integrase

NC_007086
(Xanthomonas campestris 8004)

0.0

13) xccb100_2067
( YP_001903472.1 )

phage-related integrase

NC_010688
(Xanthomonas campestris B100)

0.0

14) intB13
( YP_001629879.1 )

phage-related integrase

NC_010170
(Bordetella petrii DSM 12804)

0.0

15) PLES_26051
( YP_002440204.1 )

phage-related integrase

NC_011770
(Pseudomonas aeruginosa LESB58)

0.0

16) XF1718
( NP_299007.1 )

phage-related integrase

NC_002488
(Xylella fastidiosa 9a5c)

0.0

17) intB13
( YP_001630153.1 )

phage-related integrase

NC_010170
(Bordetella petrii DSM 12804)

0.0

18) Neut_0006
( YP_746264.1 )

phage integrase family protein

NC_008344
(Nitrosomonas eutropha C91)

0.0

19) Pecwa_1597
( YP_003258994.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

0.0

20) W5S_1461
( YP_006282427.1 )

Putative prophage CPS-53 integrase, CPS-53 (KpLE1) prophage

NC_017845
(Pectobacterium sp. SCC3193)

0.0

21) Ajs_1340
( YP_985634.1 )

phage integrase family protein

NC_008782
(Acidovorax sp. JS42)

0.0

22) Alide_1840
( YP_004126474.1 )

integrase family protein

NC_014910
(Alicycliphilus denitrificans BC)

5e-174

23) Alide2_1822
( YP_004387723.1 )

integrase family protein

NC_015422
(Alicycliphilus denitrificans K601)

3e-173

24) Ajs_1977
( YP_986229.1 )

phage integrase family protein

NC_008782
(Acidovorax sp. JS42)

7e-173

25) BN117_0506
( YP_006894556.1 )

phage-related integrase

NC_018828
(Bordetella parapertussis Bpp5)

1e-172

26) Mpe_A2408
( YP_001021598.1 )

integrase (int)

NC_008825
(Methylibium petroleiphilum PM1)

2e-172

27) A458_06740
( YP_006457017.1 )

integrase family protein

NC_018028
(Pseudomonas stutzeri CCUG 29243)

8e-169

28) PputW619_3372
( YP_001750225.1 )

integrase family protein

NC_010501
(Pseudomonas putida W619)

1e-163

29) int
( YP_158323.1 )

integrase (int)

NC_006513
(Aromatoleum aromaticum EbN1)

2e-163

30) DSC_03650
( YP_004929424.1 )

integrase family protein

NC_016147
(Pseudoxanthomonas spadix BD-a59)

8e-163

31) PSF113_3288
( YP_005208681.1 )

integrase family protein

NC_016830
(Pseudomonas fluorescens F113)

2e-161

32) XC_1018
( YP_242112.1 )

phage-related integrase

NC_007086
(Xanthomonas campestris 8004)

2e-158

33) intS
( NP_638493.1 )

phage-related integrase

NC_003902
(Xanthomonas campestris ATCC 33913)

2e-158

34) Alide2_1967
( YP_004387858.1 )

integrase family protein

NC_015422
(Alicycliphilus denitrificans K601)

4e-158

35) intB13
( YP_001630042.1 )

phage-related integrase

NC_010170
(Bordetella petrii DSM 12804)

3e-157

36) PSTAB_1251
( YP_004713621.1 )

integrase (int)

NC_015740
(Pseudomonas stutzeri ATCC 17588)

2e-151

37) intB13
( YP_001632932.1 )

phage-related integrase

NC_010170
(Bordetella petrii DSM 12804)

1e-141

38) Daci_4139
( YP_001565155.1 )

integrase family protein

NC_010002
(Delftia acidovorans SPH-1)

1e-141

39) NCGM2_1452
( YP_005979703.1 )

integrase

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

6e-139

40) PSTAA_1290
( YP_005937942.1 )

integrase family protein

NC_017532
(Pseudomonas stutzeri DSM 4166)

1e-138

• Sequence Alignments

1) Plav_3466 in NC_009719


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  949 bits (3594),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 598/643 (94%), Positives = 630/643 (98%), Gaps = 0/643 (0%)

Query  2    MALSDLTVRQAKAADKTYSLPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  61
            MALSDLTVRQAKAA KTYS+PDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  62   LREARTLRDEARALLARGINPHTDRKQKRHAVKLAADYTFKAVFDAWVEHRRKELKEGRQ  121
            LREARTLRDEARALLA+GINPHTDRKQKRHAVKLA+DYTFKAVFDAWVEHR KELKEGR+
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  122  STLSQILRIFGKDVLPALGKMSIYDIRRPQLLGVLARIEERKAFTTAEKVRTWLSQLFRY  181
            STLSQI RIF KDVLP+L +MSIYDIRRPQLLGVLARIE R AFTTAEKVRTWL+QLFRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  182  ALVIVEGLEANPASDLDVVAEPKPPVNHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  241
            ALVIVEG+EANPA+DLDVVAEPKP+V HNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  242  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  301
            LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  302  AIEIVSYLLGVIRPAQRHLLAHRSELKKRISENTLNAALKRMGYEDQLTGHGIRGTISTA  361
            AIEIV YLLGV+RPAQRHLL+HRSELKKRISENTLNAALKRMGYED+LTGHGIRGTISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  362  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  421
            LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  422  HLTIHIEGVPAMAEEDKPDaivaassaapvpsmvtapIVVTPNDGSITFQRLSQVppppt  481
            HLTIHIEGVPAMAEEDKPDAIVAASSA+PVP++V++PIVVTPN+G+ITFQRLSQVPP+PT
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPPSPT  480

Query  482  hapepEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSVSLGNR  541
            HAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLS+SLGNR
Sbjct  481  HAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR  540

Query  542  GQRVPDWQLVPLKHKLAQVLMRQCPQADSWELYRMLTRPHPDLGDRAAIDLVTPSNLGMV  601
            GQRVPDWQLVPLKHKLAQVLMRQ PQADSWELYRMLT+PHPDLGDRAAID+VTPSNLGMV
Sbjct  541  GQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNLGMV  600

Query  602  VQVIASGQFHANAPETVPPRPIPEEVRQSVRRMVDSAVVLDGA  644
            VQ+IA+++ HANAPE VPPRPI+EEVRQSVRR+++SAV LDGA
Sbjct  601  VQIIAGSEPHANAPEVVPPRPISEEVRQSVRRLMESAVALDGA  643

2) NH44784_009041 in NC_021285


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  914 bits (3461),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 579/644 (90%), Positives = 619/644 (97%), Gaps = 1/644 (0%)

Query  2    MTLSDLTVRQAKAAEKTYSIPDTDGLGLVVARTGGKSWHLRYYWLGKQKRISLGNYPEIG  61
            M+LSDLTVRQAKAA KTYSIPDTDGLGLVVA TGGKSWHLRYYWLGKQKRISLGNYPEIG
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  62   LREARTLRDEARALLAKGVNPHTDRKQKRHAVKLAADYTFKAVFDAWVEHRRKEIKEGRN  121
            LREARTLRDEARALLA+G+NPHTDRKQKRHAVKLA+DYTFKAVFDAWVEHR KE+KEGRN
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  122  STLSQILRIFNKDVLPSLKQMSIYDIRRPQLLGVLARIEERKAFTTAEKVRTWLGQLFRY  181
            STLSQI RIF+KDVLPSLKQMSIYDIRRPQLLGVLARIE R AFTTAEKVRTWLGQLFRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  182  ALVIVEGLEANPASDLDVVAEPKPPVNHNPYLHLPELPEFLHKLRLYNPRGWQTQLGIRL  241
            ALVIVEG+EANPA+DLDVVAEPKP+V HNPYLHLPELPEFL+KLRLYNPRGWQTQLGIRL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  242  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSVQ  301
            LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLS+Q
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  302  AIEIVRYLLGVMRPAQVHLLTHRSELKKRISENTLNAALKRMGYEDQLTGHGIRGTISTA  361
            AIEIVRYLLGVMRPAQ HLLTHRSELKKRISENTLNAALKRMGYED+LTGHGIRGTISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  362  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  421
            LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  422  HLTIHIEGVPAMAEEDKPNtivaaasaasvppvvaepivvtpNDGGITFQRLSQVppppt  481
            HLTIHIEGVPAMAEEDKP++IVAA+SA++VPPVVA PIVVTPN+GGITFQRLSQVPP+PT
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPPSPT  480

Query  482  hapepEVSVIQREREEMLVIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR  541
            HAPEPEVS IQREREEML IYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR
Sbjct  481  HAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR  540

Query  542  GQRVPDWQLVPLKHKLAQVLMNQCPHADPWDLYRMLTRPHPDLGDRAAIDIVTPGNLGMV  601
            GQRVPDWQLVPLKHKLAQVLM Q P+AD+W+LYRMLT+PHPDLGDRAAIDIVTP+NLGMV
Sbjct  541  GQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNLGMV  600

Query  602  VRVIAGTQQQPNRPGPDSSVQGIPEETRQRIQRLLNDAAMLESA  645
            V++IAG++ ++N P   ++ + I+EE RQ ++RL++ A  L++A
Sbjct  601  VQIIAGSEPHANAPEVVPP-RPISEEVRQSVRRLMESAVALDGA  643

3) intZ in NC_017956


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  914 bits (3461),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 579/644 (90%), Positives = 619/644 (97%), Gaps = 1/644 (0%)

Query  2    MTLSDLTVRQAKAAEKTYSIPDTDGLGLVVARTGGKSWHLRYYWLGKQKRISLGNYPEIG  61
            M+LSDLTVRQAKAA KTYSIPDTDGLGLVVA TGGKSWHLRYYWLGKQKRISLGNYPEIG
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  62   LREARTLRDEARALLAKGVNPHTDRKQKRHAVKLAADYTFKAVFDAWVEHRRKEIKEGRN  121
            LREARTLRDEARALLA+G+NPHTDRKQKRHAVKLA+DYTFKAVFDAWVEHR KE+KEGRN
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  122  STLSQILRIFNKDVLPSLKQMSIYDIRRPQLLGVLARIEERKAFTTAEKVRTWLGQLFRY  181
            STLSQI RIF+KDVLPSLKQMSIYDIRRPQLLGVLARIE R AFTTAEKVRTWLGQLFRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  182  ALVIVEGLEANPASDLDVVAEPKPPVNHNPYLHLPELPEFLHKLRLYNPRGWQTQLGIRL  241
            ALVIVEG+EANPA+DLDVVAEPKP+V HNPYLHLPELPEFL+KLRLYNPRGWQTQLGIRL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  242  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSVQ  301
            LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLS+Q
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  302  AIEIVRYLLGVMRPAQVHLLTHRSELKKRISENTLNAALKRMGYEDQLTGHGIRGTISTA  361
            AIEIVRYLLGVMRPAQ HLLTHRSELKKRISENTLNAALKRMGYED+LTGHGIRGTISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  362  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  421
            LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  422  HLTIHIEGVPAMAEEDKPNtivaaasaasvppvvaepivvtpNDGGITFQRLSQVppppt  481
            HLTIHIEGVPAMAEEDKP++IVAA+SA++VPPVVA PIVVTPN+GGITFQRLSQVPP+PT
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPPSPT  480

Query  482  hapepEVSVIQREREEMLVIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR  541
            HAPEPEVS IQREREEML IYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR
Sbjct  481  HAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR  540

Query  542  GQRVPDWQLVPLKHKLAQVLMNQCPHADPWDLYRMLTRPHPDLGDRAAIDIVTPGNLGMV  601
            GQRVPDWQLVPLKHKLAQVLM Q P+AD+W+LYRMLT+PHPDLGDRAAIDIVTP+NLGMV
Sbjct  541  GQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNLGMV  600

Query  602  VRVIAGTQQQPNRPGPDSSVQGIPEETRQRIQRLLNDAAMLESA  645
            V++IAG++ ++N P   ++ + I+EE RQ ++RL++ A  L++A
Sbjct  601  VQIIAGSEPHANAPEVVPP-RPISEEVRQSVRRLMESAVALDGA  643

4) PADK2_11745 in NC_018080


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  913 bits (3459),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 579/644 (90%), Positives = 619/644 (97%), Gaps = 1/644 (0%)

Query  1    MTLSDLTVRQAKAAEKTYSIPDTDGLGLVVARTGGKSWHLRYYWLGKQKRISLGNYPEIG  60
            M+LSDLTVRQAKAA KTYSIPDTDGLGLVVA TGGKSWHLRYYWLGKQKRISLGNYPEIG
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  61   LREARTLRDEARALLAKGVNPHTDRKQKRHAVKLAADYTFKAVFDAWVEHRRKEIKEGRN  120
            LREARTLRDEARALLA+G+NPHTDRKQKRHAVKLA+DYTFKAVFDAWVEHR KE+KEGRN
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  121  STLSQILRIFNKDVLPSLKQMSIYDIRRPQLLGVLARIEERKAFTTAEKVRTWLGQLFRY  180
            STLSQI RIF+KDVLPSLKQMSIYDIRRPQLLGVLARIE R AFTTAEKVRTWLGQLFRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  181  ALVIVEGLEANPASDLDVVAEPKPPVNHNPYLHLPELPEFLHKLRLYNPRGWQTQLGIRL  240
            ALVIVEG+EANPA+DLDVVAEPKP+V HNPYLHLPELPEFL+KLRLYNPRGWQTQLGIRL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSVQ  300
            LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLS+Q
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  301  AIEIVRYLLGVMRPAQVHLLTHRSELKKRISENTLNAALKRMGYEDQLTGHGIRGTISTA  360
            AIEIVRYLLGVMRPAQ HLLTHRSELKKRISENTLNAALKRMGYED+LTGHGIRGTISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420
            LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  421  HLTIHIEGVPAMAEEDKPNtivaaasaasvppvvaepivvtpNDGGITFQRLSQVppppt  480
            HLTIHIEGVPAMAEEDKP++IVAA+SA++VPPVVA PIVVTPN+GGITFQRLSQVPP+PT
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPPSPT  480

Query  481  hapepEVSVIQREREEMLVIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR  540
            HAPEPEVS IQREREEML IYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR
Sbjct  481  HAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR  540

Query  541  GQRVPDWQLVPLKHKLAQVLMNQCPHADPWDLYRMLTRPHPDLGDRAAIDIVTPGNLGMV  600
            GQRVPDWQLVPLKHKLAQVLM Q P+AD+W+LYRMLT+PHPDLGDRAAIDIVTP+NLGMV
Sbjct  541  GQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNLGMV  600

Query  601  VRVIAGTQQQPNRPGPDSSVQGIPEETRQRIQRLLNDAAMLESA  644
            V++IAG++ ++N P   ++ + I+EE RQ ++RL++ A  L++A
Sbjct  601  VQIIAGSEPHANAPEVVPP-RPISEEVRQSVRRLMESAVALDGA  643

5) AXYL_01141 in NC_014640


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  909 bits (3442),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 571/646 (89%), Positives = 616/646 (96%), Gaps = 3/646 (0%)

Query  2    MTLSDLTVRQAKAAEKTYSIPDTDGLGLVVARTGGKSWHLRYYWLGKQKRISLGNYPEIG  61
            M+LSDLTVRQAKAA KTYSIPDTDGLGLVVA TGGKSWHLRYYWLGKQKRISLGNYPEIG
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  62   LREARTLRDEARALLAKGVNPHTDRKQKRHAVKLAADYTFKAVFDAWVEHRRKEIKEGRN  121
            LREARTLRDEARALLA+G+NPHTDRKQKRHAVKLA+DYTFKAVFDAWVEHR KE+KEGRN
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  122  STLSQILRIFNKDVLPSLKQMSIYDIRRPQLLGVLARIEERKAFTTAEKVRTWLGQLFRY  181
            STLSQI RIF+KDVLPSLKQMSIYDIRRPQLLGVLARIE R AFTTAEKVRTWLGQLFRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  182  ALVIVEGLEANPASDLDVVAEPKPPVNHNPYLHLPELPDFLHKLRLYNPRGWQTQLGIRL  241
            ALVIVEG+EANPA+DLDVVAEPKP+V HNPYLHLPELP+FL+KLRLYNPRGWQTQLGIRL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  242  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSVQ  301
            LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLS+Q
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  302  AIEIVRYLLGVMKPAQVHLLTHRSELKKRISENTLNAALKRMGYEDQLTGHGIRGTISTA  361
            AIEIVRYLLGVM+PAQ HLLTHRSELKKRISENTLNAALKRMGYED+LTGHGIRGTISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  362  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  421
            LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  422  HLTIHIEGVPAIAGEDNPDAIvagtsaasappvvvtpivvtpNDAGITFQRLSQVppppt  481
            HLTIHIEGVPA+A ED+PDAIVA++SA++ PPVV TPIVVTPN++GITFQRLSQV  PP+
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQV--PPS  478

Query  482  rapapapEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLG  541
             + AP PEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLG
Sbjct  479  PTHAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLG  538

Query  542  NRGQRVPDWQLVPLKHKLAQVLMNQCPHADSWDLYRMLTRVHPDLGDRAAIDIVTPGNLG  601
            NRGQRVPDWQLVPLKHKLAQVLM Q P+ADSW+LYRMLT+ HPDLGDRAAIDIVTP+NLG
Sbjct  539  NRGQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNLG  598

Query  602  MVVRVIAGTQQQPNRPGPDSSAQGIPEEIRQRIQRLLNDAAMLESA  647
            MVV++IAG++ ++N P    +++ I+EE+RQ ++RL++ A  L++A
Sbjct  599  MVVQIIAGSEPHANAPEV-VPPRPISEEVRQSVRRLMESAVALDGA  643

6) NH44784_008341 in NC_021285


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  895 bits (3391),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 563/643 (88%), Positives = 607/643 (95%), Gaps = 1/643 (0%)

Query  2    MTLSDLTVRQAKAAEKAYSIPDTDGLGLVVTPTGGKSWHLRYYWLGKQKRISLGNYPEIG  61
            M+LSDLTVRQAKAA K+YSIPDTDGLGLVV+PTGGKSWHLRYYWLGKQKRISLGNYPEIG
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  62   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFNAWVEHRAKELKEGRN  121
            LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVF+AWVEHRAKELKEGRN
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  122  STLSQIKRIFEKDVLPSLGKMSIYDIRRPQLLGVLAKIEGRKAFTTAEKVRTWLGQLFRY  181
            STLSQIKRIFEKDVLPSL +MSIYDIRRPQLLGVLA+IE R AFTTAEKVRTWLGQLFRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  182  ALVIVEGLEVNPASDLDVVAEPKPPVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  241
            ALVIVEG+E NPA+DLDVVAEPKP+VTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  242  LLLTGVRTGELRLATPEQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  301
            L+LTGVRTGELRLATP+QFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  302  AIEIVRYLLEVMRPAQIHLLTHRSELKKRISENTLNAALKRMGYEDQLTGHGIRGTISTA  361
            AIEIVRYLL VMRPAQ HLLTHRSELKKRISENTLNAALKRMGYED+LTGHGIRGTISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  362  LNEVGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGRVEAASA  421
            LNE+GYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQG+VEAASA
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  422  HLTIHIEGVPAMAEEDGPIAITATSSippmppviatpivvtpSDAGITFQRLSQVppppt  481
            HLTIHIEGVPAMAEED P AI A+SS PP+PPV+ATPIVVTP+++GITFQRLSQVPP+PT
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPPSPT  480

Query  482  hapepEVSAIQREREEMLAMYESPNNLPVPLFGKLAGKSKDQINRELKAGKLLSVSMGNR  541
            HAPEPEVSAIQREREEMLA+YESP++LPVPLFGKLAGKSKDQINRELKAGKLLS+S+GNR
Sbjct  481  HAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR  540

Query  542  GQRVPDWQLVPLKHKLAQVLMNRCPHADSWELYRLLTMPHPQLGNRAAIDVITPTNLGKV  601
            GQRVPDWQLVPLKHKLAQVLM + P+ADSWELYR+LT PHP+LG+RAAID++TP+NLG V
Sbjct  541  GQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNLGMV  600

Query  602  LQAVVPNTQFGNIR-TDETQQFCEPVRRTVRRLESQPEALEEA  643
            +Q +  +   +N       + + E VR++VRRL   + AL+ A
Sbjct  601  VQIIAGSEPHANAPEVVPPRPISEEVRQSVRRLMESAVALDGA  643

7) Tola_2486 in NC_012691


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  873 bits (3308),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 581/643 (91%), Positives = 618/643 (97%), Gaps = 0/643 (0%)

Query  1    MALSDLTVRQAKAADKTYSIPDTDGLGLVVAPTSGKSWHLRYYWLGKQKRISLGNYPEIG  60
            MALSDLTVRQAKAA KTYSIPDTDGLGLVVAPT+GKSWHLRYYWLGKQKRISLGNYPEIG
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  61   lrearalrdearallaKGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRRKELKEGRQ  120
            LREAR+LRDEARALLA+GINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHR KELKEGR+
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  121  STLSQILRIFDKDVLPSLGRMSIYDIRRPQLLGVLARIEQRKAFTTAEKVRTWLGQLFRY  180
            STLSQI RIF+KDVLPSL +MSIYDIRRPQLLGVLARIE+R AFTTAEKVRTWLGQLFRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  181  ALVIVEGMETNPATDLDVVAEPKPPVNHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240
            ALVIVEGME+NPATDLDVVAEPKP+V HNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300
            LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  301  AIEILRYLLGVMRPAQQYLLTHRSDLKKRISENTLNAALKRMGYEDQLTGHGIRGTISTA  360
            AIEI+RYLLGVMRPAQ+ LLTHRS+LKKRISENTLNAALKRMGYED+LTGHGIRGTISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420
            LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  421  HLTIHIEGvpamveaedaaaiveaspavpvppvvatpiivtpntAGATFQRLSQVppppt  480
            HLTIHIEGVPAM E + + AIV AS+A PVPPVVATPI+VTPN +G TFQRLSQVPP+PT
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPPSPT  480

Query  481  rtpepeVSAIQREREEMLAIYESPNNLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR  540
            ++PEPEVSAIQREREEMLAIYESP++LPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR
Sbjct  481  HAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR  540

Query  541  GQRVPDWQLVPLKHKLALVLMNQCPEADSWELYRMLTRPHPDLGDRAAIDVVTPTNLVAV  600
            GQRVPDWQLVPLKHKLA VLM Q P+ADSWELYRMLT+PHPDLGDRAAID+VTP+NL  V
Sbjct  541  GQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNLGMV  600

Query  601  VRTIAGDQQHADAPETVSPRPIPEQVRQSVRRLVDSTVVLEGA  643
            V+ IAG + HA+APE V+PRPI+E+VRQSVRRL++S+V L+GA
Sbjct  601  VQIIAGSEPHANAPEVVPPRPISEEVRQSVRRLMESAVALDGA  643

8) NH44784_010121 in NC_021285


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  856 bits (3243),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 533/647 (83%), Positives = 599/647 (93%), Gaps = 4/647 (0%)

Query  1    MALSDLTVRQAKTTGKRYTLSDNDCLGLMVSAAGGKSWQFRYYWLGKQKRLCLGGYPALS  60
            MALSDLTVRQAK++ K Y+++D D LGL+V+++GGKSW++RYYWLGKQKR+ LG YP ++
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  61   LREARIERDKAQALLARGIDPQVERDQKRHAAKLAGEYTFKTVFDAWVEHRRKELKEGRQ  120
            LREAR  RD A+ALLA+GI+P+ +R QKRHA KLA++YTFK+VFDAWVEHR KELKEGR+
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  121  STLSQILRIFNKDVLPTLGRMSIYDIRRPQLLGVLAAIEKRKAFTTAEKVRTWFNQLFRY  180
            STLSQI RIF+KDVLP+L +MSIYDIRRPQLLGVLA IEKR AFTTAEKVRTW+ QLFRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  181  ALVIAEGLEVNPAADLDVVAEPKPPVAHNPYLHLPEMPEFLQKLRLYNPRGWQTQLGVRL  240
            ALVI EG+E NPA+DLDVVAEPKP+V+HNPYLHLPE+PEFLQKLRLYNPRGWQTQLG+RL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  241  LFLTGVRTGELRLAEPEQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300
            LFLTGVRTGELRLA P+QFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  301  AIEIVRYLLGVMRPAQKYLLSHRSELKKRISENTLNKAVQLMGYEGRLTGHGIRGTISTA  360
            AIEIVRYLLGVMRPAQ+ LL+HRSELKKRISENTLN A++ MGYE++LTGHGIRGTISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  361  LNEIGYPKIWVDAQLSHSDPNKVSSSYNHAKYVEPRRRMMQDWADRLDLLEQGEVEAASA  420
            LNEIGYPKIWVDAQLSHSDPNKVSS+YNHAKYVEPRRRMMQDWADRLDLLEQG+VEAASA
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  421  HLTIRIDGVPAMAEVEEAVDATLAMAEptppgvppvvatpivvtpSNGGITFQRLSQVpp  480
            HLTI+I+GVPAMAE E+  DA +A +   +P VPPVVATPIVVTP++GGITFQRLSQVPP
Sbjct  421  HLTIHIEGVPAMAE-EDKPDAIVAASS--APPVPPVVATPIVVTPNEGGITFQRLSQVPP  477

Query  481  ppthapepEVSAIQREREEMLTIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISL  540
            +PTHAPEPEVSAIQREREEML+IYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISL
Sbjct  478  SPTHAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISL  537

Query  541  GNRGQRVPDWQLVPLKHKLAQVLMNQCPHADSWDLYRMLTQPHPDLGDRAAIDAVTPTNV  600
            GNRGQRVPDWQLVPLKHKLAQVLM Q P+ADSW+LYRMLTQPHPDLGDRAAID VTP+N+
Sbjct  538  GNRGQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNL  597

Query  601  PAIIQVIMGDYQHYADMPEAIAPYPIPEDVRQSVRRLVDSAVVLDGA  647
              ++Q+I G   H A+ PE ++P PI+E+VRQSVRRL++SAV LDGA
Sbjct  598  GMVVQIIAGSEPH-ANAPEVVPPRPISEEVRQSVRRLMESAVALDGA  643

9) int in NC_009138


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  856 bits (3241),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 532/647 (83%), Positives = 599/647 (93%), Gaps = 4/647 (0%)

Query  1    MALSDLTVRQAKTTGKRYTLSDNDCLGLMVSAAGGKSWQFRYYWLGKQKRLCLGGYPALS  60
            MALSDLTVRQAK++ K Y+++D D LGL+V+++GGKSW++RYYWLGKQKR+ LG YP ++
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  61   LREARTERDKAQALLARGIDPQVERDQKRHAAKLAGEYTFKTVFDAWVEHRRKELKEGRQ  120
            LREART RD A+ALLA+GI+P+ +R QKRHA KLA++YTFK+VFDAWVEHR KELKEGR+
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  121  STLSQILRIFNKDVLPTLGKMSIYDIRRPQLLGVLAAIEKRKAFTTAEKVRTWFNQMFRY  180
            STLSQI RIF+KDVLP+L +MSIYDIRRPQLLGVLA IEKR AFTTAEKVRTW+ Q+FRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  181  ALVIAEGLEVNPAADLDVVAEPKPPVAHNPYLHLPEMPEFLQKLRLYNPRGWQTQLGVRL  240
            ALVI EG+E NPA+DLDVVAEPKP+V+HNPYLHLPE+PEFLQKLRLYNPRGWQTQLG+RL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  241  LFLTGVRTGELRLAEPEQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300
            LFLTGVRTGELRLA P+QFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  301  AIEIVRYLLGVMRPAQRYLLSHRSELKKRISENTLNKAVQLMGYEGRLTGHGIRGTISTA  360
            AIEIVRYLLGVMRPAQR LL+HRSELKKRISENTLN A++ MGYE++LTGHGIRGTISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  361  LNEIGYPKIWVDAQLSHSDPNKVSSSYNHAKYVEPRRRMMQDWADRLDLLEQGEVEAASA  420
            LNEIGYPKIWVDAQLSHSDPNKVSS+YNHAKYVEPRRRMMQDWADRLDLLEQG+VEAASA
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  421  HLTIRIDGVPAMAEVEEAVDATLAMAEptppgvppvvatpivvtpSSGGITFQRLSQVpp  480
            HLTI+I+GVPAMAE E+  DA +A +   +P VPPVVATPIVVTP+ GGITFQRLSQVPP
Sbjct  421  HLTIHIEGVPAMAE-EDKPDAIVAASS--APPVPPVVATPIVVTPNEGGITFQRLSQVPP  477

Query  481  ppthapepEVSAIQREREEMLTIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISL  540
            +PTHAPEPEVSAIQREREEML+IYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISL
Sbjct  478  SPTHAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISL  537

Query  541  GNRGQRVPDWQLVPLKHKLAQVLMNQCLHADSWDLYRMLTQPHPDLGDRAAIDAVTPTNV  600
            GNRGQRVPDWQLVPLKHKLAQVLM Q  +ADSW+LYRMLTQPHPDLGDRAAID VTP+N+
Sbjct  538  GNRGQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNL  597

Query  601  PAIIRVIMGDYQHHADMPEAIAPYPIPEDVRQSVRRLVDSAVVLDGA  647
              ++++I G  + HA+ PE ++P PI+E+VRQSVRRL++SAV LDGA
Sbjct  598  GMVVQIIAGS-EPHANAPEVVPPRPISEEVRQSVRRLMESAVALDGA  643

10) XCV2298 in NC_007508


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  850 bits (3218),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 516/647 (80%), Positives = 592/647 (92%), Gaps = 4/647 (0%)

Query  1    MALSDLIVRQAKTTGKRYTLHDNDCLSLMVSAAGGKSWIFRYSWLGTQKRMSLGSYPALS  60
            MALSDL VRQAK++ K Y++ D D L+L+V+++GGKSW +RY WLG QKR+SLG+YP ++
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  61   LREARAERDKAQALIARGIDPRIERDQRRHAARLAGEYTFKNVFDAWVEHRRKELKEGRQ  120
            LREAR+ RD A+AL+A+GI+P+ +R Q+RHA +LA++YTFK VFDAWVEHR KELKEGR+
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  121  STLSQILRIFNKDVLPTLGKMSIYDIRRPQLVGVVAAIEKRKAFTTAEKVRTWFNQMFRY  180
            STLSQI RIF+KDVLP+L +MSIYDIRRPQL+GV+A IEKR AFTTAEKVRTW+ Q+FRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  181  ALVIAEGLEVNPAADLDVVAEPKPPVAHNPYLHLPELPEFLQKLRRYNPRGWQTQLGVRL  240
            ALVI EG+E NPA+DLDVVAEPKP+V+HNPYLHLPELPEFLQKLR YNPRGWQTQLG+RL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  241  LFLTGVRTGELRLAEPEQFDLDRGLWIIPPQVVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300
            LFLTGVRTGELRLA P+QFDLDRGLWIIPPQ+VKQLQDEMRKAGKRPQDVPPYIVPLSLQ
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  301  AIEIVRYLLGVMRPAQKYLLSHRSELKKRISENTLNKAVQLMGYEGRLTGHGIRGTISTA  360
            AIEIVRYLLGVMRPAQ+ LL+HRSELKKRISENTLN A++ MGYE++LTGHGIRGTISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGEVEAASA  420
            LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQG+VEAASA
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  421  HLTIRIDGVPVMAEAEDVVSAAPTVAEPVASGVSPVVATPIVVTPNSGGITFQRLSQVpp  480
            HLTI+I+GVP MAE +    + + VA + A+ V+PVVATPIVVTPN GGITFQRLSQVPP
Sbjct  421  HLTIHIEGVPAMAEED---KPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPP  477

Query  481  ppthapepEVSAIQREREEMLAMYESPNNLPVPLFGKLAGKSKDQINRELKAGKLLSISL  540
            +PTHAPEPEVSAIQREREEMLA+YESP++LPVPLFGKLAGKSKDQINRELKAGKLLSISL
Sbjct  478  SPTHAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISL  537

Query  541  GNRGQRVPDWQLVPLKHKLAQVLMNQCPRADSWELYRMLTQPHPDLGDRAAIDAVTPTNV  600
            GNRGQRVPDWQLVPLKHKLAQVLM Q P+ADSWELYRMLTQPHPDLGDRAAID VTP+N+
Sbjct  538  GNRGQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNL  597

Query  601  PTIIRVIMGDYQRHADAPEAVAIWPTPGDVRQSVRRLVDSAVVFEGA  647
              ++++I G  + HA+APE V+ +P + +VRQSVRRL++SAV ++GA
Sbjct  598  GMVVQIIAGS-EPHANAPEVVPPRPISEEVRQSVRRLMESAVALDGA  643

11) intS in NC_003902


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  848 bits (3210),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 528/628 (85%), Positives = 585/628 (94%), Gaps = 5/628 (0%)

Query  3    MALSDLTVRQAKAAEKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEVG  62
            MALSDLTVRQAKAA KTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPE+G
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  63   LREARTLRDEARALVAKGINPHADRKQKRRAIKLASDYTFKAVFDAWVEHRAKELKEGRN  122
            LREARTLRDEARAL+A+GINPH+DRKQKR+A+KLASDYTFKAVFDAWVEHRAKELKEGRN
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  123  STLSQIQRIFGKDVLPSLERMSIYDIRRPQLLGVLARIERRKAFTTTEKVRTWLSQLFRY  182
            STLSQI+RIF KDVLPSL +MSIYDIRRPQLLGVLARIE+R AFTT+EKVRTWL+QLFRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  183  ALVIVEGMEANPATDLDVVAEPKPPVSHNPYLRLPELPDFLRKLRLYNPRGWQTQLGIRL  242
            ALVIVEGMEANPATDLDVVAEPKP+V+HNPYL+LPELP+FL+KLRLYNPRGWQTQLGIRL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  243  LFLTGVRTGELRLATPEQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPHDIPPYIVPLSVQ  302
            LFLTGVRTGELRLATP+QFDLDRGLWIIPPQIVKQLQDEMRKAGKRP+D+PPYIVPLS+Q
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  303  AIEIVRYLLGVMRPAQKHLLAHRSELKKRISENTLNAALKRVGYDAQLTGHGIRGTISTA  362
            AIEIVRYLLGVMRPAQ+HLL+HRSELKKRISENTLNAALKR+GY+ +LTGHGIRGTISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  363  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGKVEAAST  422
            LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQG+VEAAS+
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  423  HLTIHIEGvpamaeepaaiaa-----vsakaavsstpivvvpstEGTTFQRLSQVppppt  477
            HLTIHIEGVPAMAEE  + A       ++ ++V +TPIVV P+  G TFQRLSQVPP+PT
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPPSPT  480

Query  478  rtpepeASAIQREREEMLAMYESPCCLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR  537
            ++PEPE SAIQREREEMLA+YESP  LPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR
Sbjct  481  HAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR  540

Query  538  GQRVPDWQLVPLKHKLTQVLMNQCQGADSWDLFRMLTRPHTDLGDRAAIDVVTPTNVLAI  597
            GQRVPDWQLVPLKHKL+QVLM Q   ADSW+L+RMLT+PH DLGDRAAID+VTP+N+  +
Sbjct  541  GQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNLGMV  600

Query  598  VRTIMGDQSFEKVRTLQSSESVGERAQQ  625
            V+ I G ++  +   + ++ +++E  +Q
Sbjct  601  VQIIAGSEPHANAPEVVPPRPISEEVRQ  628

12) XC_2002 in NC_007086


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  847 bits (3209),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 528/628 (85%), Positives = 585/628 (94%), Gaps = 5/628 (0%)

Query  3    MALSDLTVRQAKAAEKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEVG  62
            MALSDLTVRQAKAA KTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPE+G
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  63   LREARTLRDEARALVAKGINPHADRKQKRRAIKLASDYTFKAVFDAWVEHRAKELKEGRN  122
            LREARTLRDEARAL+A+GINPH+DRKQKR+A+KLASDYTFKAVFDAWVEHRAKELKEGRN
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  123  STLSQIQRIFGKDVLPSLERMSIYDIRRPQLLGVLARIERRKAFTTTEKVRTWLSQLFRY  182
            STLSQI+RIF KDVLPSL +MSIYDIRRPQLLGVLARIE+R AFTT+EKVRTWL+QLFRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  183  ALVIVEGMEANPATDLDVVAEPKPPVSHNPYLRLPELPDFLRKLRLYNPRGWQTQLGIRL  242
            ALVIVEGMEANPATDLDVVAEPKP+V+HNPYL+LPELP+FL+KLRLYNPRGWQTQLGIRL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  243  LFLTGVRTGELRLATPEQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPHDIPPYIVPLSVQ  302
            LFLTGVRTGELRLATP+QFDLDRGLWIIPPQIVKQLQDEMRKAGKRP+D+PPYIVPLS+Q
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  303  AIEIVRYLLGVMRPAQKHLLAHRSELKKRISENTLNAALKRVGYDAQLTGHGIRGTISTA  362
            AIEIVRYLLGVMRPAQ+HLL+HRSELKKRISENTLNAALKR+GY+ +LTGHGIRGTISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  363  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGKVEAAST  422
            LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQG+VEAAS+
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  423  HLTIHIEGvpamaeepaaiaa-----vsakaavsstpivvvpstEGTTFQRLSQVppppt  477
            HLTIHIEGVPAMAEE  + A       ++ ++V +TPIVV P+  G TFQRLSQVPP+PT
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPPSPT  480

Query  478  rtpepeASAIQREREEMLALYESPCCLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR  537
            ++PEPE SAIQREREEMLA+YESP  LPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR
Sbjct  481  HAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR  540

Query  538  GQRVPDWQLVPLKHKLTQVLMNQCQGADSWDLFRMLTRPHTDLGDRAAIDVVTPTNVLAI  597
            GQRVPDWQLVPLKHKL+QVLM Q   ADSW+L+RMLT+PH DLGDRAAID+VTP+N+  +
Sbjct  541  GQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNLGMV  600

Query  598  VRTIMGDQSFEKVRTLQSSESVGERAQQ  625
            V+ I G ++  +   + ++ +++E  +Q
Sbjct  601  VQIIAGSEPHANAPEVVPPRPISEEVRQ  628

13) xccb100_2067 in NC_010688


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  846 bits (3205),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 528/628 (85%), Positives = 585/628 (94%), Gaps = 5/628 (0%)

Query  3    MALSDLTVRQAKAAEKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEVG  62
            MALSDLTVRQAKAA KTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPE+G
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  63   LREARTLRDEARALVAKGINPHADRKQKRRAIKLASDYTFKAVFDAWVEHRAKELKEGRN  122
            LREARTLRDEARAL+A+GINPH+DRKQKR+A+KLASDYTFKAVFDAWVEHRAKELKEGRN
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  123  STLSQIQRIFGKDVLPSLERMSIYDIRRPQLLGVLARIERRKAFTTAEKVRTWLSQLFRY  182
            STLSQI+RIF KDVLPSL +MSIYDIRRPQLLGVLARIE+R AFTTAEKVRTWL+QLFRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  183  ALVIVEGMEANPATDLDVVAEPKPPVSHNPYLRLPELPDFLRKLRLYNPRGWQTQLGIRL  242
            ALVIVEGMEANPATDLDVVAEPKP+V+HNPYL+LPELP+FL+KLRLYNPRGWQTQLGIRL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  243  LFLTGVRTGELRLATPEQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPHDIPPYIVPLSVQ  302
            LFLTGVRTGELRLATP+QFDLDRGLWIIPPQIVKQLQDEMRKAGKRP+D+PPYIVPLS+Q
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  303  AIEIVRYLLGVMRPAQKHLLAHRSELKKRISENTLNAALKRVGYDAQLTGHGIRGTISTA  362
            AIEIVRYLLGVMRPAQ+HLL+HRSELKKRISENTLNAALKR+GY+ +LTGHGIRGTISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  363  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMIQDWADRLDLLEQGKVEAAST  422
            LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRM+QDWADRLDLLEQG+VEAAS+
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  423  HLTIHIEGvpamaeepaaiaa-----vsakaavsstpivvvpstEGTTFQRLSQVppppt  477
            HLTIHIEGVPAMAEE  + A       ++ ++V +TPIVV P+  G TFQRLSQVPP+PT
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPPSPT  480

Query  478  rtpepeASAIQREREEMLAMYESPCCLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR  537
            ++PEPE SAIQREREEMLA+YESP  LPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR
Sbjct  481  HAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR  540

Query  538  GQRVPDWQLVPLKHKLTQVLMNQCQGADSWDLFRMLTRPHTDLGDRAAIDVVTPTNVLAI  597
            GQRVPDWQLVPLKHKL+QVLM Q   ADSW+L+RMLT+PH DLGDRAAID+VTP+N+  +
Sbjct  541  GQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNLGMV  600

Query  598  VRTIMGDQSFEKVRTLQSSESVGERAQQ  625
            V+ I G ++  +   + ++ +++E  +Q
Sbjct  601  VQIIAGSEPHANAPEVVPPRPISEEVRQ  628

14) intB13 in NC_010170


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  836 bits (3164),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 531/646 (83%), Positives = 601/646 (94%), Gaps = 8/646 (1%)

Query  1    MALSDLTVRQARTTGKRYTISDNDCLGLMVSAAGGKSWQFRYYRLGKQKRMSLGGYPALS  60
            MALSDLTVRQA+++ K Y+I+D D LGL+V+++GGKSW++RYY+LGKQKR+SLG YP ++
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  61   LREARAERDKAQALLARGIDPQVERDQRRHAVRLAGEYTFKTVFDAWVEHRRKELKEGRQ  120
            LREAR+ RD A+ALLA+GI+P+ +R Q+RHAV+LA++YTFK+VFDAWVEHR KELKEGR+
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  121  STMSQILRIFNKDVLPTLGKMSIYDIRRPQLLGVLAAIEKRKAFTTAEKVRTWFNQLFRY  180
            ST+SQI RIF+KDVLP+L +MSIYDIRRPQLLGVLA IEKR AFTTAEKVRTW+ QLFRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  181  ALVIAEGLEVNPAADLDVVAEPKPPVTHNPYLHLPEMPEFLQKLRLYNPRGWQTQLGIRL  240
            ALVI EG+E NPA+DLDVVAEPKP+VTHNPYLHLPE+PEFLQKLRLYNPRGWQTQLGIRL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  241  LFLTGVRTGELRLAEPEQFDLDRGLWIIPPQVVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300
            LFLTGVRTGELRLA P+QFDLDRGLWIIPPQ+VKQLQDEMRKAGKRPQDVPPYIVPLSLQ
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  301  AIEIVRYLLGVMRPAQKYLLSHRSELKKRISENTLNKAVQLMGYEGRLTGHGIRGTISTA  360
            AIEIVRYLLGVMRPAQ+ LL+HRSELKKRISENTLN A++ MGYE++LTGHGIRGTISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGEVEAASA  420
            LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQG+VEAASA
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  421  HLTIRIDGVPAMAEVEEAVDATLTMAEptppgvppvvatpivvtpSSGGITFQRLSQVpp  480
            HLTI+I+GVPAMAE E+  DA ++ +   +P VPPVVATPIVVTP+ GGITFQRLSQVPP
Sbjct  421  HLTIHIEGVPAMAE-EDKPDAIVAASS--APPVPPVVATPIVVTPNEGGITFQRLSQVPP  477

Query  481  ppthapepEVSAIQREREEMLTIYESPSNLPVPLFGKLAGKSKDQINRELKAGKLLSISL  540
            +PTHAPEPEVSAIQREREEML+IYESPS+LPVPLFGKLAGKSKDQINRELKAGKLLSISL
Sbjct  478  SPTHAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISL  537

Query  541  GNRGQRVPDWQLVPLKHKLAQVLMNQCPHADSWELYRMLTQPHPDLGDRGAIDVVTPANL  600
            GNRGQRVPDWQLVPLKHKLAQVLM Q P+ADSWELYRMLTQPHPDLGDR+AID+VTP+NL
Sbjct  538  GNRGQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNL  597

Query  601  gvvvqviaggqqavS-----PPLSISEDVRQSVRRLLDSAVVAEGA  641
            G+VVQ+IAG++   +     PP +ISE+VRQSVRRL++SAV  +GA
Sbjct  598  GMVVQIIAGSEPHANAPEVVPPRPISEEVRQSVRRLMESAVALDGA  643

15) PLES_26051 in NC_011770


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  831 bits (3147),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 517/647 (80%), Positives = 588/647 (91%), Gaps = 4/647 (0%)

Query  1    MALSDLTVRQARTTGKRYTLSDNDCLGLMVSAAGGKSWIFRYYWLGKQKRMSLGGYPALS  60
            MALSDLTVRQA+++ K Y+++D D LGL+V+++GGKSW +RYYWLGKQKR+SLG YP ++
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  61   LREARAERDKAQVLLAKGIDPQIERDQRRHAAKLAGEYTFKNVFDAWVEHRRKELKEGRQ  120
            LREAR+ RD A+ LLA+GI+P+ +R Q+RHA KLA++YTFK VFDAWVEHR KELKEGR+
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  121  STLSQILRIFNKDVLPTLGKMSIYDIRRPQLVGVVAAIEKRKAFTTAEKVRTWFNQMFRY  180
            STLSQI RIF+KDVLP+L +MSIYDIRRPQL+GV+A IEKR AFTTAEKVRTW+ Q+FRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  181  ALVIAEGLEVNPAADLDVVAEPKPPVAHNPYLHLPELPEFLQKLRRYNPRGWQTQLGVRL  240
            ALVI EG+E NPA+DLDVVAEPKP+V+HNPYLHLPELPEFLQKLR YNPRGWQTQLG+RL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  241  LFLTGVRTGELRLAEPEQFDLDRGLWIIPPQVVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300
            LFLTGVRTGELRLA P+QFDLDRGLWIIPPQ+VKQLQDEMRKAGKRPQDVPPYIVPLSLQ
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  301  AIEIVRYLLGVMRPAQKYLLSHRSELKKRISENTLNKAVQLMGYEGRLTGHGIRGTISTA  360
            AIEIVRYLLGVMRPAQ+ LL+HRSELKKRISENTLN A++ MGYE++LTGHGIRGTISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGEVEAASA  420
            LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQG+VEAASA
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  421  HLTIRIDGVPamaeveevvgavsttaepvvpgvppvvatpivvtpNSGGIMFQRLSQvpp  480
            HLTI+I+GVP    + E   + +  A +  P VPPVVATPIVVTPN GGI FQRLSQVPP
Sbjct  421  HLTIHIEGVP---AMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPP  477

Query  481  ppvhapepevSAIQREREEMLAIYESPNNLPVPLFGKLAGKSKDQINRELKAGKLLSISL  540
            +P HAPEPEVSAIQREREEMLAIYESP++LPVPLFGKLAGKSKDQINRELKAGKLLSISL
Sbjct  478  SPTHAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISL  537

Query  541  GNRGQRVPDWQLVPLKHKLAQVLMNQCPHADSWDLYRMLTQPHPDLGDRAAIDAVTPTNV  600
            GNRGQRVPDWQLVPLKHKLAQVLM Q P+ADSW+LYRMLTQPHPDLGDRAAID VTP+N+
Sbjct  538  GNRGQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNL  597

Query  601  PAIIRVLMGDYQHHADVPEAVAPRPIPEDVRQSVRRLVDSAAVLEGV  647
              +++++ G  + HA+ PE V+PRPI+E+VRQSVRRL++SA  L+G 
Sbjct  598  GMVVQIIAGS-EPHANAPEVVPPRPISEEVRQSVRRLMESAVALDGA  643

16) XF1718 in NC_002488


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  824 bits (3120),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 516/653 (80%), Positives = 590/653 (91%), Gaps = 10/653 (1%)

Query  1    MALSDLTVRQARTTGKRYTLSDNDCLGLMVSAAGGKSWIFRYYWLGKQKRMSLGGYPALS  60
            MALSDLTVRQA+++ K Y+++D D LGL+V+++GGKSW +RYYWLGKQKR+SLG YP ++
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  61   LREARAERDKAQALLARGIDPQIERDQRRHAAKLAGEYTFKNVFDAWVEHRRKELKEGRQ  120
            LREAR+ RD A+ALLA+GI+P+ +R Q+RHA KLA++YTFK VFDAWVEHR KELKEGR+
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  121  STLSQILRIFNKDVLPTLGKMSIYDIRRPQLVGVVAAIEKRKAFTTAEKVRTWFNQMFRY  180
            STLSQI RIF+KDVLP+L +MSIYDIRRPQL+GV+A IEKR AFTTAEKVRTW+ Q+FRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  181  ALVIAEGLEVNPAADLDVVAEPKPPVAHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240
            ALVI EG+E NPA+DLDVVAEPKP+V+HNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  241  LFLTGVRTGELRLAEPEQFDLDRGLWIIPPQVVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300
            LFLTGVRTGELRLA P+QFDLDRGLWIIPPQ+VKQLQDEMRKAGKRPQDVPPYIVPLSLQ
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  301  AIEIVRYLLGVMRPAQKYLLSHRSELKKRISENTINKALQLMGYEGRLTGHGIRGTISTA  360
            AIEIVRYLLGVMRPAQ+ LL+HRSELKKRISENT+N AL+ MGYE++LTGHGIRGTISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420
            LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  421  HLTIRIDgvpamaeveeavgavdavdaaptvaepavpgvppvvatpivvtpNSGGITFQR  480
            HLTI+I+            +  +   + + VA ++ P VPPVVATPIVVTPN GGITFQR
Sbjct  421  HLTIHIE---------GVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQR  471

Query  481  LSQvppppvhapepevSAIQREREEMLAIYESPNNLPVPLFGKLAGKSKDQINRELKAGK  540
            LSQVPP+P HAPEPEVSAIQREREEMLAIYESP++LPVPLFGKLAGKSKDQINRELKAGK
Sbjct  472  LSQVPPSPTHAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGK  531

Query  541  LLSISLGNRGQRVPDWQLVPLKHRLVQVLMNQCPHADSWDLYRMLTQPHPDLGDRAAIDA  600
            LLSISLGNRGQRVPDWQLVPLKH+L QVLM Q P+ADSW+LYRMLTQPHPDLGDRAAID 
Sbjct  532  LLSISLGNRGQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDI  591

Query  601  VTPANVPAIIRVIMGDYQQREDVPEVVAPRSIPDDVRLSVRRLVDSAVVLEGA  653
            VTP+N+  ++++I G  + + + PEVV+PR+I+++VR SVRRL++SAV L+GA
Sbjct  592  VTPSNLGMVVQIIAGS-EPHANAPEVVPPRPISEEVRQSVRRLMESAVALDGA  643

17) intB13 in NC_010170


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  797 bits (3017),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 481/608 (80%), Positives = 558/608 (92%), Gaps = 3/608 (0%)

Query  15   MALSDLIVRQAKTTGKRYTLYDNDCLSLMVSAAGGKSWMFRYSWLGKQKRMALGGYPALS  74
            MALSDL VRQAK++ K Y++ D D L+L+V+++GGKSW +RY WLGKQKR++LG YP ++
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  75   LREARAERDKAQALIARGIDPQIERDQRRHAAKLAGEYTFKNVFDAWVEHRRKELKEGRQ  134
            LREAR+ RD A+AL+A+GI+P+ +R Q+RHA KLA++YTFK VFDAWVEHR KELKEGR+
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  135  STLSQILRIFNKDVLPTLGKMSIYDIRRPQLLGVLAAIEKRKAFTTAEKVRTWFNQMFRY  194
            STLSQI RIF+KDVLP+L +MSIYDIRRPQLLGVLA IEKR AFTTAEKVRTW+ Q+FRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  195  ALVIAEGLEVNPAADLDVVAEPKPPVAHNPYLHLPELPEFLQKLRRYNPRGWQTQLGVRL  254
            ALVI EG+E NPA+DLDVVAEPKP+V+HNPYLHLPELPEFLQKLR YNPRGWQTQLG+RL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  255  LFLTGVRTGELRLAEPEQFDLDRGFWIIPPEVVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  314
            LFLTGVRTGELRLA P+QFDLDRG+WIIPP++VKQLQDEMRKAGKRPQDVPPYIVPLSLQ
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  315  AIEIVRYLLGVMRPAQKYLLSHRSELKKRISENTLNKAVQLMGYEGRLTGHGIRGTISTA  374
            AIEIVRYLLGVMRPAQ+ LL+HRSELKKRISENTLN A++ MGYE++LTGHGIRGTISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  375  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGEVQAASA  434
            LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQG+V+AASA
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  435  HLTIRIDGvpamaeveeavdvaptvaepGVSGSppvaatpivvtpNSGGITFQRLSQVPP  494
            HLTI+I+GVPAMAE + +  + ++ +    +  PPV ATPIVVTPN GGITFQRLSQVPP
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASS---APPVPPVVATPIVVTPNEGGITFQRLSQVPP  477

Query  495  PPAHAPESEVSAIQREREEMLAMYESPNNLPVALFGKLAGKSKDQINRELKAGKLLSISL  554
            +P+HAPE+EVSAIQREREEMLA+YESP++LPV+LFGKLAGKSKDQINRELKAGKLLSISL
Sbjct  478  SPTHAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISL  537

Query  555  GNRGQRVPDWQLVPLKRRLAQALMNQCPHVDSWALYRLLTKPHSNLGNRAAIDVVTPTNV  614
            GNRGQRVPDWQLVPLK++LAQ LM Q P+ DSW LYR+LT+PH++LG+RAAID+VTP+N+
Sbjct  538  GNRGQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNL  597

Query  615  GKVLQAVT  622
            G V+Q ++
Sbjct  598  GMVVQIIA  605

18) Bxe_A1097 in NC_007951


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  797 bits (3018),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 481/608 (80%), Positives = 558/608 (92%), Gaps = 3/608 (0%)

Query  1    MALSDLIVRQAKTTGKRYTLYDNDCLSLMVSAAGGKSWMFRYSWLGKQKRMALGGYPALS  60
            MALSDL VRQAK++ K Y++ D D L+L+V+++GGKSW +RY WLGKQKR++LG YP ++
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  61   LREARAERDKAQALIARGIDPQIERDQRRHAAKLAGEYTFKNVFDAWVEHRRKELKEGRQ  120
            LREAR+ RD A+AL+A+GI+P+ +R Q+RHA KLA++YTFK VFDAWVEHR KELKEGR+
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  121  STLSQILRIFNKDVLPTLGKMSIYDIRRPQLLGVLAAIEKRKAFTTAEKVRTWFNQMFRY  180
            STLSQI RIF+KDVLP+L +MSIYDIRRPQLLGVLA IEKR AFTTAEKVRTW+ Q+FRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  181  ALVIAEGLEVNPAADLDVVAEPKPPVAHNPYLHLPELPEFLQKLRRYNPRGWQTQLGVRL  240
            ALVI EG+E NPA+DLDVVAEPKP+V+HNPYLHLPELPEFLQKLR YNPRGWQTQLG+RL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  241  LFLTGVRTGELRLAEPEQFDLDRGFWIIPPEVVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300
            LFLTGVRTGELRLA P+QFDLDRG+WIIPP++VKQLQDEMRKAGKRPQDVPPYIVPLSLQ
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  301  AIEIVRYLLGVMRPAQKYLLSHRSELKKRISENTLNKAVQLMGYEGRLTGHGIRGTISTA  360
            AIEIVRYLLGVMRPAQ+ LL+HRSELKKRISENTLN A++ MGYE++LTGHGIRGTISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGEVQAASA  420
            LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQG+V+AASA
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  421  HLTIRIDGvpamaeveeavdvaptvaepGVSGSppvaatpivvtpNSGGITFQRLSQVPP  480
            HLTI+I+GVPAMAE + +  + ++ +    +  PPV ATPIVVTPN GGITFQRLSQVPP
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASS---APPVPPVVATPIVVTPNEGGITFQRLSQVPP  477

Query  481  PPAHAPESEVSAIQREREEMLAMYESPNNLPVALFGKLAGKSKDQINRELKAGKLLSISL  540
            +P+HAPE+EVSAIQREREEMLA+YESP++LPV+LFGKLAGKSKDQINRELKAGKLLSISL
Sbjct  478  SPTHAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISL  537

Query  541  GNRGQRVPDWQLVPLKRRLAQALMNQCPHVDSWALYRLLTKPHSNLGNRAAIDVVTPTNV  600
            GNRGQRVPDWQLVPLK++LAQ LM Q P+ DSW LYR+LT+PH++LG+RAAID+VTP+N+
Sbjct  538  GNRGQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNL  597

Query  601  GKVLQAVT  608
            G V+Q ++
Sbjct  598  GMVVQIIA  605

19) Neut_0006 in NC_008344


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  694 bits (2623),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 433/616 (71%), Positives = 535/616 (87%), Gaps = 3/616 (0%)

Query  1    MALSDMAVRQARATGKNYTLGDIDGLSLAVTAQGGRSWHFRYCWADKQKRMSLGTYPEIG  60
            MALSD++VRQA+A+ K Y++ D DGL+L V++ GG+SWH+RY W +KQKR+SLG YPEIG
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  61   lrearalrdqarallaKGINPKVDRKHKRQAVRLADEHNFKAVYLQWIEHRKLELKEGRQ  120
            LREAR+LRD+ARALLA+GINP  DRK+KR+AV+LA +  FKAV+  W+EHR  ELKEGR+
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  121  STLSQIQRIFKNDVLPSLGRTSIYDIRRSYLLEVLAKIEQRGALTTAEKVRTWFNQLFRF  180
            STLSQI+RIF +DVLPSL + SIYDIRR+ LL VLA+IE+R A+TTAEKVRTW+ QLFR+
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  181  ALVKIERLETNPASDLDVVAIPKPPAAHNPFLRLPEIPELLQKLRSYRGAV-TTKLGIRL  239
            ALV +E +E+NPA+DLDVVA PKP+ +HNP+L+LPE+PE+LQKLR Y      T+LGIRL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  240  LMLTGVRTGELRLAAPDQFDLERGLWIIPPEVVKQLQLDMRKKGKRTQDIPPYIVPLSLQ  299
            L LTGVRTGELRLA+PDQFDL+RGLWIIPP++VKQLQ +MRK GKR QD+PPYIVPLSLQ
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  300  AIEIVQSLLERIKPAQRYLLAHRSDLTKRISENTLNGALKRMGYQDLLTGHGIRGTISTA  359
            AIEIV+ LL  ++PAQR LL+HRS+L KRISENTLN+ALKRMGY+D LTGHGIRGTISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  360  LNEFGYLKKWVDAQLSHSDPDKVSTAYNHAEYVEPRRRMMQDWADRLDLLEQGHVAAAST  419
            LNE+GY K WVDAQLSHSDP+KVS+AYNHA YVEPRRRMMQDWADRLDLLEQG+V AAS+
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  420  HLTIRIEGVPAMVNNKHASGPAVASATDSAQTTIETPIIVSAIDHGAAFQRLSPLPPATA  479
            HLTI+IEGVPAM ++  + +   AS++ +    + TPI+V++ + G +FQRLS +PP+ +
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPPSPT  480

Query  480  HVLAPEPETSTIQREREEMLAIYEAPDNLPVPLFAKLAGKSKDQINRELKAGKLLSISLG  539
            H  APEPE S+IQREREEMLAIYE+P +LPVPLF+KLAGKSKDQINRELKAGKLLSISLG
Sbjct  481  H--APEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLG  538

Query  540  NRGQRVPDWqlvplkqklvqvllkqCPDTDPWALYHLLTKPHAELSDRTAIDTVTPSNLG  599
            NRGQRVPDWQLVPLK+KL QVL++Q P++D+W LY++LT+PH++L+DR+AID VTPSNLG
Sbjct  539  NRGQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNLG  598

Query  600  TVLQAITSVQKRSSEP  615
             V+Q I++ + +++ P
Sbjct  599  MVVQIIAGSEPHANAP  614

20) Pecwa_1597 in NC_013421


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  680 bits (2572),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 416/618 (68%), Positives = 522/618 (85%), Gaps = 18/618 (2%)

Query  1    MALSDMAVRQAKATGKAYTLGDIDGLSLAVTDMGGRSWHFRYSWAGKQKRMSLGTYPEVG  60
            MALSD++VRQAKA+ K+Y++ D DGL+L V+  GG+SWH+RY W GKQKR+SLG YPE+G
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  61   LREARTLRDQARALLAKGINPKLDRKHKRQFVRLADEHTFKAVFLQWVEHRRLELKEGRN  120
            LREARTLRD+ARALLA+GINP  DRK+KR+ V+LA + TFKAVF  WVEHR  ELKEGRN
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  121  STLSQILRIFERDVLPSLSKLSIYDVRRADLLNVLSKIEQREAFTTAEKVRSWLNQLFRF  180
            STLSQI RIFE+DVLPSL ++SIYD+RR++LL VL++IE+REAFTTAEKVR+WL QLFR+
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  181  AQVKVERLESNPASDLDvvavpappvvHNPFlrlpelpellQKVRGYRGAI-TTQLGIRL  239
            A V VE +E+NPA+DLDVVA P P+V HNP+L+LPELPE+LQK+R Y      TQLGIRL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  240  LLLTGVRTGELRLAAPEQFDLEQGLWIIPPEVVKQLQTDMRKKGKRPQDIPSYIVPLSIQ  299
            L+LTGVRTGELRLA+P+QFDL++GLWIIPP++VKQLQ +MRK GKRPQD+P+YIVPLS+Q
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  300  AIEIVRYLLEEVRPAQRYLFSHRSDLKKRISENTLNGALKRMGYQDLLTGHGIRGTISTA  359
            AIEIVRYLL  +RPAQR L++HRS+LKKRISENTLN+ALKRMGY+D LTGHGIRGTISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  360  LNEVGYPKVWVDAQLSHCDPNQVSAAYNHALYVEPRRKMMQDWADRLDLLEQGEVEAASQ  419
            LNE+GYPK+WVDAQLSH DPN+VS+AYNHA YVEPRR+MMQDWADRLDLLEQG+VEAAS 
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  420  HLTIRIDGVPVLDESNGADAMSKD---------------VSPIIGGITSHRLSavparpv  464
            HLTI+I+GVP + E + +DA+                  V+P  GGIT +RLS VP+ P 
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPPSPT  480

Query  465  pepvvDIPVSDLQRERMEMLAAYEAPHNLPVVQFSKLAGKSKDQINREIKAGKLLTISLG  524
              P  +  VS +QRER EMLA YE+P +LPV  F+KLAGKSKDQINRE+KAGKLL+ISLG
Sbjct  481  HAPEPE--VSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLG  538

Query  525  NRGQRVPEWQLVPMKLKLTQMMMKHLSHAEGWDVYRLLSNPHPELDGCAAVDIIKPTNMS  584
            NRGQRVP+WQLVP+K KL+Q++M++ ++A++W++YR+L++PHP+L++ AA+DI+ P+N++
Sbjct  539  NRGQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNLG  598

Query  585  SVVQVLLSLQAFGAERKV  602
             VVQ++ + ++ +    V
Sbjct  599  MVVQIIAGSEPHANAPEV  616

21) W5S_1461 in NC_017845


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  676 bits (2555),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/618 (68%), Positives = 518/618 (84%), Gaps = 18/618 (2%)

Query  1    MALSDMAVRQARATGKAYTLGDIDGLSLAVTDMGGRSWHFRYSWAGKQKRMSLGTYPEVG  60
            MALSD++VRQA+A+ K+Y++ D DGL+L V+  GG+SWH+RY W GKQKR+SLG YPE+G
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  61   LREARTLRDQARALLAKGINPKLDRKHKRQFVRLADEHTFKAVFLQWVEHRKLELKEGRN  120
            LREARTLRD+ARALLA+GINP  DRK+KR+ V+LA + TFKAVF  WVEHR  ELKEGRN
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  121  STLSQILRIFERDVLPSLSKLSIYDVRRADLLNVLSKIEQREAFTTAEKVRSWLNQLFRF  180
            STLSQI RIFE+DVLPSL ++SIYD+RR++LL VL++IE+REAFTTAEKVR+WL QLFR+
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  181  AQVKVERLESNPASDLDvvavpappvaHNPFlrlpelpellQKVRGYRGAI-TTQLGIRL  239
            A V VE +E+NPA+DLDVVA P P+V+HNP+L+LPELPE+LQK+R Y      TQLGIRL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  240  LLLTGVRTGELRLATPEQFDLEQGLWIIPPEVVKQLQTDMRKKGKRPQDIPSYIVPLSIQ  299
            L+LTGVRTGELRLATP+QFDL++GLWIIPP++VKQLQ +MRK GKRPQD+P+YIVPLS+Q
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  300  AIEIVRYLFEEVRPAQRYLFSHRSDLKKRISENTLNGALKRMGYQDLLTGHGIRGTISTA  359
            AIEIVRYL+  +RPAQR L++HRS+LKKRISENTLN+ALKRMGY+D LTGHGIRGTISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  360  LNEVGYPKVWVDAQLSHCDPNQVSAAYNHALYVEPRRKMMQDWADRLDLLEQGEVEAASQ  419
            LNE+GYPK+WVDAQLSH DPN+VS+AYNHA YVEPRR+MMQDWADRLDLLEQG+VEAAS 
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  420  HLTIRIDGVPVLDESNVADVM---------------PKDVSPVIGGITPHRLSavparpv  464
            HLTI+I+GVP + E + +D +               P  V+P  GGIT +RLS     P 
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLS--QVPPS  478

Query  465  pepvveipvSDLQRERMEMLAAYEAPHNLPVVQFAKLAGKSKEQINREIKAGKLLTISLG  524
            P    E  VS +QRER EMLA YE+P +LPV  F+KLAGKSK+QINRE+KAGKLL+ISLG
Sbjct  479  PTHAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLG  538

Query  525  NRGQRVPEWQLVPMKLKLTQVMMKMLPHAEGWDVYRLLTSVHPELDDRAAIDIITPNNMD  584
            NRGQRVP+WQLVP+K KL+QV+M+  P+A++W++YR+LT  HP+L+DRAAIDI+TP+N++
Sbjct  539  NRGQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNLG  598

Query  585  NVVQVLLPQQAFEAGRKV  602
             VVQ++   ++   +  V
Sbjct  599  MVVQIIAGSEPHANAPEV  616

22) Ajs_1340 in NC_008782


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  628 bits (2375),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 375/483 (78%), Positives = 435/483 (91%), Gaps = 6/483 (1%)

Query  1    MALSDLIVRQAKTTGKRYTLHDNDCLSLMVSAAGGKSWIFRYSWLGTQKRMSLGSYPALS  60
            MALSDL VRQAK++ K Y++ D D L+L+V+++GGKSW +RY WLG QKR+SLG+YP ++
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  61   LREARAERDKAQALIARGIDPRIERDQRRHAARLAGEYTFKNVFDAWVEHRRKELKEGRQ  120
            LREAR+ RD A+AL+A+GI+P+ +R Q+RHA +LA++YTFK VFDAWVEHR KELKEGR+
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  121  STLSQILRIFNKDVLPTLGKMSIYDIRRPQLVGVVAAIEKRKAFTTAEKVRTWFNQMFRY  180
            STLSQI RIF+KDVLP+L +MSIYDIRRPQL+GV+A IEKR AFTTAEKVRTW+ Q+FRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  181  ALVIAEGLEVNPAADLDVVAEPKPPVAHNPYLHLPELPEFLQKLRRYNPRGWQTQLGVRL  240
            ALVI EG+E NPA+DLDVVAEPKP+V+HNPYLHLPELPEFLQKLR YNPRGWQTQLG+RL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  241  LFLTGVRTGELRLAEPEQFDLDRGLWIIPPQVVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300
            LFLTGVRTGELRLA P+QFDLDRGLWIIPPQ+VKQLQDEMRKAGKRPQDVPPYIVPLSLQ
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  301  AIEIVRYLLGVMRPAQKYLLSHRSELKKRISENTLNKAVQLMGYEGRLTGHGIRGTISTA  360
            AIEIVRYLLGVMRPAQ+ LL+HRSELKKRISENTLN A++ MGYE++LTGHGIRGTISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGEVEAASA  420
            LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQG+VEAASA
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  421  HLTIRIDGVPVMAEAEDVVSAAPTVAEPVASGVSPVVATPIVVTP-DGQSKFPHLWPPQI  479
            HLTI+I+GVP MAE +    + + VA + A+ V+PVVATPIVVTP +G   F +L  +Q+
Sbjct  421  HLTIHIEGVPAMAEED---KPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRL--SQV  475

Query  480  PQA  482
            P +
Sbjct  476  PPS  478

23) Alide_1840 in NC_014910


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  604 bits (2281),  Expect = 5e-174, Method: Compositional matrix adjust.
 Identities = 377/611 (62%), Positives = 504/611 (83%), Gaps = 12/611 (1%)

Query  1    MALSDLAVRQAKATGKAYTLPDLDGLSLAVTAAGGRTWHFRYYWAGKQKRMSLGTYPEVT  60
            MALSDL+VRQAKA+ K+Y++PD DGL+L V+++GG++WH+RYYW GKQKR+SLG YPE+ 
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  61   LREARGLRDEARVLLAKGINPRVHRKQKRTAVRLADENTFDAVYRKWLKHRGLSLKEGRQ  120
            LREAR LRDEAR LLA+GINP+ +RKQKR AV+LA + TF AV+  W+ HR+  LKEGR+
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  121  TTLSILPRIFDKDVLPTLGKRSIYEIKRPDLLEVIAKIEKRRALSVAEKVRTWFNQLFRY  180
            +TLS + RIF+KDVLP+L + SIY+I+RP+LL V+A+IEKR A++ AEKVRTW+ QLFRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  181  ALVIVPGLEQNPASDLDVVALPLPPVNHNPFLRMAELPKLLQRLRSYrgrr-qtqlglrv  239
            ALVIV G+E NPA+DLDVVA P P+V HNP+L+++ELP +LQ+LR Y  R  QTQLG+R+
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  240  llltgvrtgELRQATPDQFDLDRGLWIIPPDVVKQLQLDMRKKRQQPKDIPPYIVPLSIQ  299
            L+LTGVRTGELR ATPDQFDLDRGLWIIPP++VKQLQ +MRK  ++P+D+PPYIVPLS+Q
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  300  AMEIVRHLLDEFKPAQRHLFRHDSDLKKRISENTLNGALKRMGYQERLTGHGIRGTMSTA  359
            A+EIVR LL+  +PAQRHL+ H S+LKKRISENTLN+ALKRMGY+++LTGHGIRGT+STA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  360  LNEIGYPKVWVDAQLSHVDPNKVSATYNHAEYVEQRRRMMQDWADRLDLFEQNQVEAASM  419
            LNEIGYPK+WVDAQLSH DPNKVS++YNHA YVE RRRMMQDWADRLDL+EQ QVEAAS 
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  420  PLTVHLEGVPAFPSEQtasapstpvaaspIL------LVTKPGDAMPLVSAAAHRLPAVP  473
             LT+H+EGVPA + E+ + A  ++ +A+P+       +V  P ++    + + +RL+ VP
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEG----GITFQRLSQVP  476

Query  474  PPRSAAPLVP-SDIQRERMELFDVFEAPHNLPVAAFAKMAGKSRRWISYEIKAGNLLALN  532
            P+ + AP    S IQRER E++ ++E+P +LPV+ F+K+AGKS+  I+ E+KAG+LL+++
Sbjct  477  PSPTHAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSIS  536

Query  533  VGNRGQRVPDWHLDPLKHELIQSVLKLTRGADPWQIYHALLQPRSMLRGHSALEGVTASN  592
            +GNRGQRVPDW+L PLKH L Q +++    AD+W++Y+ L QP++ L +++A++ VT+SN
Sbjct  537  LGNRGQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSN  596

Query  593  LDKLVMAVSTA  603
            L+ +V  ++ +
Sbjct  597  LGMVVQIIAGS  607

24) Alide2_1822 in NC_015422


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  601 bits (2272),  Expect = 3e-173, Method: Compositional matrix adjust.
 Identities = 378/613 (62%), Positives = 503/613 (83%), Gaps = 16/613 (2%)

Query  1    MALSDLAVRQAKATGKAYTLPDLDGLSLAVTAAGGRTWHFRYYWAGKQKRMSLGTYPEVT  60
            MALSDL+VRQAKA+ K+Y++PD DGL+L V+++GG++WH+RYYW GKQKR+SLG YPE+ 
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  61   LREARSLRDEARALLAKGTNPRVHRKQKRTAVRLADENTFDAVYRKWLKHRGLSLKEGRQ  120
            LREAR+LRDEARALLA+G NP+ +RKQKR AV+LA + TF AV+  W+ HR+  LKEGR+
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  121  TTLSILPRIFDKDVLPALGKRSVYEIKRPDLLEVIAKIEKRKALSVAEKVRTWFNQLFRY  180
            +TLS + RIF+KDVLP+L + S+Y+I+RP+LL V+A+IEKR A++ AEKVRTW+ QLFRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  181  ALVIVPGLEQNPAADLDVVALPLPPVNHNPFLRMAELPKLLQRLRSYrgrr-qtqlglrl  239
            ALVIV G+E NPA+DLDVVA P P+V HNP+L+++ELP +LQ+LR Y  R  QTQLG+RL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  240  llltgvrtgelrQAMPDQFDLDRGLWIIPPDVVKQLQLDMRKKRQQPKDIPPYIVPLSIQ  299
            L+LTGVRTGELR A PDQFDLDRGLWIIPP++VKQLQ +MRK  ++P+D+PPYIVPLS+Q
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  300  AMEIVRHLLDEFKPAQRHLFRHDSDLKKRISENTLNGALKRMGYQERLTGHGIRGTMSTA  359
            A+EIVR LL+  +PAQRHL+ H S+LKKRISENTLN+ALKRMGY+++LTGHGIRGT+STA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  360  LNEIGYPKVWVDAQLSHVDPNKVSATYNHAEYVEQRRRMMQDWADRLDLFEQNQVEAASM  419
            LNEIGYPK+WVDAQLSH DPNKVS++YNHA YVE RRRMMQDWADRLDL+EQ QVEAAS 
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  420  PLTVHLEGVPAFPSEQTANA--------PSTPVAASPILLVTKPGDAMPLVSAAAHRLPA  471
             LT+H+EGVPA + E+ ++A        P  PV A+PI++  + G      + + +RL+ 
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEG------GITFQRLSQ  474

Query  472  VPPPRSAAPLVP-SDIQRERMELFDVFEAPHNLPVAAFAKMAGKSRRWISYEIKAGNLLA  530
            VPP+ + AP    S IQRER E++ ++E+P +LPV+ F+K+AGKS+  I+ E+KAG+LL+
Sbjct  475  VPPSPTHAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLS  534

Query  531  LNVGNRGQRVPDWHLDPLKHELIQSVLKLTRGADPWQIYHALLQPRSMLRGHSALEGVTA  590
            +++GNRGQRVPDW+L PLKH L Q +++    AD+W++Y+ L QP++ L +++A++ VT+
Sbjct  535  ISLGNRGQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTP  594

Query  591  SNLDKLAMAVSTA  603
            SNL+ +   ++ +
Sbjct  595  SNLGMVVQIIAGS  607

25) Ajs_1977 in NC_008782


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  600 bits (2266),  Expect = 7e-173, Method: Compositional matrix adjust.
 Identities = 379/611 (63%), Positives = 506/611 (83%), Gaps = 12/611 (1%)

Query  1    MALSDLAVRQAKATGKAYTLPDLDGLSLAVTAAGGRTWHFRYYWAGKQKRMSLGTYPEVT  60
            MALSDL+VRQAKA+ K+Y++PD DGL+L V+++GG++WH+RYYW GKQKR+SLG YPE+ 
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  61   LREARSLRDEARALLAKGTNPRVHRKQKRTAVRLADENTFEAVYRKWLKHRGLTLKEGRQ  120
            LREAR+LRDEARALLA+G NP+ +RKQKR AV+LA + TF AV+  W+ HR+  LKEGR+
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  121  TTLSILPRIFDKDVLPTLGKRSIYEIKRPDLLEVIAKIEKRRALSVAEKVRTWFNQLFRY  180
            +TLS + RIF+KDVLP+L + SIY+I+RP+LL V+A+IEKR A++ AEKVRTW+ QLFRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  181  ALVIVPGLEQNPASDLDVVALPLPPVNHNPFLRMAELPKLLQRLRSYrgrr-qtqlglrl  239
            ALVIV G+E NPA+DLDVVA P P+V HNP+L+++ELP +LQ+LR Y  R  QTQLG+RL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  240  llltgvrtgelrQATPDQFDLDRGLWIIPPDVVKQLQLDMRKKRQQPKDIPPYIVPLSIQ  299
            L+LTGVRTGELR ATPDQFDLDRGLWIIPP++VKQLQ +MRK  ++P+D+PPYIVPLS+Q
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  300  AMEIVRHLLDEFKPAQRHLFRHDSDLKKRISENTLNGALKRMGYQERLTGHGIRGTMSTA  359
            A+EIVR LL+  +PAQRHL+ H S+LKKRISENTLN+ALKRMGY+++LTGHGIRGT+STA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  360  LNEIGYPKVWVDAQLSHVDPNKVSATYNHAEYVEQRRRMMQDWADRLDLFEQNQVEAASM  419
            LNEIGYPK+WVDAQLSH DPNKVS++YNHA YVE RRRMMQDWADRLDL+EQ QVEAAS 
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  420  PLTVHLEGVPAFPNEQtasapstpvaaspIL------LVTKPGDAMPLVSAAAHRLPAVP  473
             LT+H+EGVPA ++E+ + A  ++ +A+P+       +V  P ++    + + +RL+ VP
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEG----GITFQRLSQVP  476

Query  474  PPRSAAPLVP-SDIQRERMELFDVFEAPHNLPVAAFAKMAGKSRRWISYEIKAGNLLALN  532
            P+ + AP    S IQRER E++ ++E+P +LPV+ F+K+AGKS+  I+ E+KAG+LL+++
Sbjct  477  PSPTHAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSIS  536

Query  533  VGNRGQRVPDWHLDPLKHELIQSVLKLTRGADPWQIYHALLQPRSMLRGRSALEGVTASN  592
            +GNRGQRVPDW+L PLKH L Q +++    AD+W++Y+ L QP++ L +R+A++ VT+SN
Sbjct  537  LGNRGQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSN  596

Query  593  LDKLVMAVSTA  603
            L+ +V  ++ +
Sbjct  597  LGMVVQIIAGS  607

26) BN117_0506 in NC_018828


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  599 bits (2264),  Expect = 1e-172, Method: Compositional matrix adjust.
 Identities = 380/611 (63%), Positives = 505/611 (83%), Gaps = 12/611 (1%)

Query  7    MALSDLAVRQAKATGKAYTLPDLDGLSLAVTAAGGRTWHFRYYWAGKQKRMSLGTYPEVT  66
            MALSDL+VRQAKA+ K+Y++PD DGL+L V+++GG++WH+RYYW GKQKR+SLG YPE+ 
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  67   LREARSLRDEARALLAKGTNPRVHRKQKRTAVRLADENTFEAVYRKWLKHRGLSLKEGRQ  126
            LREAR+LRDEARALLA+G NP+ +RKQKR AV+LA + TF AV+  W+ HR+  LKEGR+
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  127  TTLSILPRIFDKDVLPALGKRSIYEIKRPDLLEVIAKIEKRRALSVAEKVRTWFNQLFRY  186
            +TLS + RIF+KDVLP+L + SIY+I+RP+LL V+A+IEKR A++ AEKVRTW+ QLFRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  187  ALVIVPGLEQNPASDLDVVALPLPPVNHNPFLRMAELPKLLQRLRSYrgrr-qtqlglrl  245
            ALVIV G+E NPA+DLDVVA P P+V HNP+L+++ELP +LQ+LR Y  R  QTQLG+RL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  246  llltgvrtgelrQATPDQFDLDRGLWIIPPDVVKQLQLDMRKKRQQPKDIPPYIVPLSIQ  305
            L+LTGVRTGELR ATPDQFDLDRGLWIIPP++VKQLQ +MRK  ++P+D+PPYIVPLS+Q
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  306  AMEIVRHLLDEFKPAQRHLFRHDSDLKKRISENTLNGALKRMGYQERLTGHGIRGTMSTA  365
            A+EIVR LL+  +PAQRHL+ H S+LKKRISENTLN+ALKRMGY+++LTGHGIRGT+STA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  366  LNEIGYPKVWVDAQLSHVDPNKVSATYNHAEYVEQRRRMMQDWADRLDLFEQNQVEAASM  425
            LNEIGYPK+WVDAQLSH DPNKVS++YNHA YVE RRRMMQDWADRLDL+EQ QVEAAS 
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  426  PLTVHLEGVPAFPSEQTasapsapvaaspIL------LVTKPGDAMPLVSAAAHRLPAVP  479
             LT+H+EGVPA + E+ + A  A+ +A+P+       +V  P ++    + + +RL+ VP
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEG----GITFQRLSQVP  476

Query  480  PPRSAAPLVP-SDIQRERMELFDVFEAPHNLPVAAFAKMAGKSRRWISYEIKAGNLLALN  538
            P+ + AP    S IQRER E++ ++E+P +LPV+ F+K+AGKS+  I+ E+KAG+LL+++
Sbjct  477  PSPTHAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSIS  536

Query  539  VGNRGQRVPDWHLDPLKHELIQSVLKLTRGADPWQIYHALLQPRSMLRGRSALEGVTASN  598
            +GNRGQRVPDW+L PLKH L Q +++    AD+W++Y+ L QP++ L +R+A++ VT+SN
Sbjct  537  LGNRGQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSN  596

Query  599  LDKLVMAVSTA  609
            L+ +V  ++ +
Sbjct  597  LGMVVQIIAGS  607

27) Mpe_A2408 in NC_008825


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  598 bits (2260),  Expect = 2e-172, Method: Compositional matrix adjust.
 Identities = 377/611 (62%), Positives = 507/611 (83%), Gaps = 12/611 (1%)

Query  1    MALSDLAVRQAKATGKAYTLPDLDGLSLAVTAAGGRTWHFRYYWAGKQKRMSLGTYPEVT  60
            MALSDL+VRQAKA+ K+Y++PD DGL+L V+++GG++WH+RYYW GKQKR+SLG YPE+ 
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  61   LREARSLRDEARALLAKGINPRVHRKQKRTAVRLADENTFEAVYRKWLKHRGLSLKEGRQ  120
            LREAR+LRDEARALLA+GINP+ +RKQKR AV+LA + TF AV+  W+ HR+  LKEGR+
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  121  TTLSILPRIFDKDVLPTLGKRSVYEIKRPDLLEVIAKIEKRRALSVAEKVRTWFNQLFRY  180
            +TLS + RIF+KDVLP+L + S+Y+I+RP+LL V+A+IEKR A++ AEKVRTW+ QLFRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  181  ALVIVPGLEQNPASDLDVVALPLPPVNHNPFLRMAELPKLLQRLRSYrgrr-qtqlglrl  239
            ALVIV G+E NPA+DLDVVA P P+V HNP+L+++ELP +LQ+LR Y  R  QTQLG+RL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  240  llltgvrtgelrQATPDQFDLDRGLWIIPPDVVKQLQLDMRKKRQQPKDIPPYIVPLSIQ  299
            L+LTGVRTGELR ATPDQFDLDRGLWIIPP++VKQLQ +MRK  ++P+D+PPYIVPLS+Q
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  300  AMEIVRHLLDEFKPAQRHLFRHDSDLKKRISENTLNGALKRMGYQERLTGHGIRGTMSTA  359
            A+EIVR LL+  +PAQRHL+ H S+LKKRISENTLN+ALKRMGY+++LTGHGIRGT+STA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  360  LNEIGYPKVWVDAQLSHVDPNKVSATYNHAEYVEQRRRMMQDWADRLDLFEQNQVEAASM  419
            LNEIGYPK+WVDAQLSH DPNKVS++YNHA YVE RRRMMQDWADRLDL+EQ QVEAAS 
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  420  PLTVHLEGVPAFPNEQtasapstpvaaspIL------LVTKPGDAMPLVSAAAHRLPAVP  473
             LT+H+EGVPA ++E+ + A  ++ +A+P+       +V  P ++    + + +RL+ VP
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEG----GITFQRLSQVP  476

Query  474  PPRSAAPLVP-SDIQRERMELFDVFEAPHNLPVAAFAKMAGKSRRWISYEIKAGNLLALN  532
            P+ + AP    S IQRER E++ ++E+P +LPV+ F+K+AGKS+  I+ E+KAG+LL+++
Sbjct  477  PSPTHAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSIS  536

Query  533  VGNRGQRVPDWHLDPLKHELIQSVLKLTRGADPWQIYHALLQPRSMLRGHSALEGVTAGN  592
            +GNRGQRVPDW+L PLKH L Q +++    AD+W++Y+ L QP++ L +++A++ VT++N
Sbjct  537  LGNRGQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSN  596

Query  593  LDKLVMAVSTA  603
            L+ +V  ++ +
Sbjct  597  LGMVVQIIAGS  607

28) A458_06740 in NC_018028


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  586 bits (2215),  Expect = 8e-169, Method: Compositional matrix adjust.
 Identities = 374/611 (62%), Positives = 499/611 (82%), Gaps = 12/611 (1%)

Query  1    MALSDLAVRQAKATGKAYTLPDLDGLSLAVTAAGGRTWHFRYYWAGKQKRMSLGTYPEVT  60
            MALSDL+VRQAKA+ K+Y++PD DGL+L V+++GG++WH+RYYW GKQKR+SLG YPE+ 
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  61   LREARSLRDEARALLAKGTNPRVHRKQKRTAVRLADENTFEAVYRKWLKHRGLSLKEGRQ  120
            LREAR+LRDEARALLA+G NP+ +RKQKR AV+LA + TF AV+  W+ HR+  LKEGR+
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  121  TTLSILPRIFDKDVLPTLGKQSIYEIKRPDLLEVIARIEKRRALSVAEKVRTWFNQLFRY  180
            +TLS + RIF+KDVLP+L + SIY+I+RP+LL V+ARIEKR A++ AEKVRTW+ QLFRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  181  ALVIVPGLEQNPAFDLDVVALPLPPVNHNPFLRMAELPRLLQRLRSYrgrr-qtqlglrl  239
            ALVIV G+E NPA DLDVVA P P+V HNP+L+++ELP +LQ+LR Y  R  QTQLG+RL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  240  llltgvrtgelrQAMPDQFDLDRGLWIIPPDVVKQLQLDMRKKRQQPKDIPPYIVPLSIQ  299
            L+LTGVRTGELR A PDQFDLDRGLWIIPP++VKQLQ +MRK  ++P+D+PPYIVPLS+Q
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  300  AMEIVGHLLDEFKPAQRYLFRHDSDLKKRISENTLNGALKRMGYQERLTGHGIRGTMSTA  359
            A+EIV  LL+  +PAQR L+ H S+LKKRISENTLN+ALKRMGY+++LTGHGIRGT+STA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  360  LNEIGYPKVWVDAQLSHVDPNKVSATYNHAEYVEQRRRMMQDWADRLDLFEQNQVEAASM  419
            LNEIGYPK+WVDAQLSH DPNKVS++YNHA YVE RRRMMQDWADRLDL+EQ QVEAAS 
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  420  PLTVHLEGVPAFPSEQtasapstpvaaspsL------LVTKPGDAMPLVSAAAHRLPAVP  473
             LT+H+EGVPA + E+ + A  ++ +A+P        +V  P ++    + + +RL+ VP
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEG----GITFQRLSQVP  476

Query  474  PQRSAAPLVP-SDIQRERMDLFDVFEAPHNLPVAAFAKMAGKSRRWISYEIQAGNLLALN  532
            P  + AP    S IQRER +++ ++E+P +LPV+ F+K+AGKS+  I+ E++AG+LL+++
Sbjct  477  PSPTHAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSIS  536

Query  533  VGNRGQRVPDWHLDPLKHELIQSVLKLTRGADPWQIYHALLQPRSMLRGRSALEGVTASN  592
            +GNRGQRVPDW+L PLKH L Q +++    AD+W++Y+ L QP++ L +R+A++ VT+SN
Sbjct  537  LGNRGQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSN  596

Query  593  FDKLVMAVSTA  603
            ++ +V  ++ +
Sbjct  597  LGMVVQIIAGS  607

29) PputW619_3372 in NC_010501


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  569 bits (2149),  Expect = 1e-163, Method: Compositional matrix adjust.
 Identities = 349/601 (59%), Positives = 471/601 (79%), Gaps = 10/601 (1%)

Query  1    MALTEMAIRHARVTAKEYTLADSDGLFLNVTAQGSKIWHFRYYWEGRQKRMSFGSYPQVG  60
            MAL+++++R+A+ + K Y+++D+DGL L V++ G+K WH+RYYW G+QKR+S+G+YP++G
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  61   LrdarerrdearaLIAQGFNPCEQRKQQRVALRLANDQTFDAVFEQWIAFRRLSLKEGRQ  120
            LR+AR  RDEARAL+AQG+NP  +RKQ+R A++LA+D TF AVF+ W+  R   LKEGR+
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  121  STLSQILRIFAKDIQPYIGEQSIHEINRHVLMDLLSRIECRKAFTTAEKCRTWLNQLFRY  180
            STLSQI RIF KD+ P + + SI +I R  L+++L+RIE R AFTTAEK RTWL QLFRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  181  ALVRIAGLEHNPAADLDVVAVPKPPVEHNPFLRMEELPHFLGKLRAFRGSQ-QTQLGIRL  239
            ALV + G+E NPA+DLDVVA PKP+V HNP+L++ ELP+FL KLR +     QTQLGIRL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  240  LLLTGVRTGELRLATPDQFDLERRLWIIPPEVVKQLQLKMRNTRRQTAKVPPYIVPLSIQ  299
            L+LTGVRTGELRLATPDQFDL+R LWIIPP++VKQLQ  MR++ ++   VPPYIVPLS+Q
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  300  AAEVVRLLLDQVVPAQRHLLTHRSDLSKRISENTLNSALRRMGFADRLTGHGVRATISTA  359
            A E+VR LL+ + PAQRHLLTHRS+L KRISENTLN+AL+RMG+ D+LTGHG+R+TISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  360  LNEIGYPKIWIDAQLSHADPDKVSSAYNHAEYVEQRRTMMQDWANRLDLWVQGHTKAAAS  419
            LNEIGYPKIW+DAQLSH+DP+KVSSAYNHA YVE RR MMQDWA+RLDL  QG+  AA++
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  420  PLTIRLEGVsqlsfglqslll-------PPVRSGMKPEMSSLDVEGS--KALADRFGASE  470
             LTI++EGV+ ++   ++  +       P       P + + +  G   + L++   ++ 
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPPSPT  480

Query  471  VSAVRLVSDIQRERAEMLEIYEAATNLPLLSFARLAGKSRDQINRDIKArrllslslGNR  530
             ++   VS IQRER EML IYE++++LP+  F++LAGKS+DQINR++KA +LLS+SLGNR
Sbjct  481  HAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR  540

Query  531  GQRIPDWQLDPVKHKLVLAIFKSLPQLEAWEVYRLLSEPHDRLRGRIPLDVVQTENFETT  590
            GQR+PDWQL P+KHKL   + +  PQ ++WE+YR+L++PH  L +R ++D+V   N+   
Sbjct  541  GQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNLGMV  600

Query  591  L  591
            +
Sbjct  601  V  601

30) int in NC_006513


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  569 bits (2147),  Expect = 2e-163, Method: Compositional matrix adjust.
 Identities = 345/612 (57%), Positives = 481/612 (79%), Gaps = 13/612 (2%)

Query  2    LTDMTVRQAKATGKLYTIADFDGLCLHISAVGGKAWHFRYTWMGQRARISLGSYPelslr  61
            L+D+TVRQAKA+ K Y+I+D DGL L +++ GGK+WH+RY W+G++ RISLG+YPE++LR
Sbjct  3    LSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIGLR  62

Query  62   earelrdaarsllarGINPRTDRKQKRHAIRLAGENTFMAVYEKWMEHRQLTLEEGRQSS  121
            EAR LRD AR+LLA+GINP+TDRKQKRHA++LA++ TF AV++ W+EHR   L EGR+S+
Sbjct  63   EARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRNST  122

Query  122  LEQIRRVFRKDVFPFLKRLTIYEITRPHLLEVIGRIEKRNSLSVAEKVRTWLKQLFDYAM  181
            L QI+R+F KDV+P LK+++IY+I RP+LL V++RIEKR++++ AEKVRTWL QLF YA+
Sbjct  123  LSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRYAL  182

Query  182  VVISGMETHPATDLHVVAVPLPPVEHNPFLRMAELPEFLQTLRKYRGML-KTQLAIRLLL  240
            V++ GME++PATDL+VVA P P+V HNP+L+++ELPEFLQ LR Y     +TQL+IRLL+
Sbjct  183  VIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRLLF  242

Query  241  LTGVRTGELRLATPDQFDLDRRLWIIPVMSLKQRKMLTRKKRRRVTDIPPYIVPLSVQAI  300
            LTGVRTGELRLATPDQFDLDR LWIIP   +KQ +   RK  +R  D+PPYIVPLS+QAI
Sbjct  243  LTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQAI  302

Query  301  EIVRYLLEDVKPVQKHLFAGVKRLTDRMSENTVNVALKRLGYDDRLTGHGLRATISTALN  360
            EIVRYLL  ++P Q+HL++    L  R+SENT+N ALKR+GY+D+LTGHG+R+TISTALN
Sbjct  303  EIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTALN  362

Query  361  ELGYPKVWVDSQLSHADPNRISATYNHAEYVEQRRVMMQDWADRLDLFEQNQVQVASMHL  420
            E+GYPK+WVD+QLSH+DPN++S++YNHA YVE RR MMQDWADRLDL+EQ QV+ AS HL
Sbjct  363  EIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASAHL  422

Query  421  TIHLQGLPTIAGQETTPLPTPGQHAPILLVASTERSVPTVTPAT------QRLSAV--EM  472
            TIH++G+P++A ++    P +   A+     +   + P V  +       QRLS V    
Sbjct  423  TIHIEGVPAMAEEDK---PDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPPSP  479

Query  473  PEYARPKLSDLQHERLKLLEIFEGPDNLVVADYANLAGKSRRWITYEIQTGNLLSIQLGN  532
             + + P +S +Q+ER  +L I+E+P +L V+ +++LAGKS+  I  E+++G+LLSI LGN
Sbjct  480  THAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLGN  539

Query  533  KGQRVPVWQLDPLKRQLVQAILRQTPRGVDTWDIYHALLRPHDALGNRSPVDAVTPENMK  592
            +GQRVP WQL PLK++L Q ++RQ P++ D+W++Y+ L +PH  LG+R+++D VTP N+ 
Sbjct  540  RGQRVPDWQLVPLKHKLAQVLMRQYPQA-DSWELYRMLTQPHPDLGDRAAIDIVTPSNLG  598

Query  593  IAVRVVVEQCSQ  604
            + V+++    ++
Sbjct  599  MVVQIIAGSEPH  610

31) DSC_03650 in NC_016147


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  567 bits (2139),  Expect = 8e-163, Method: Compositional matrix adjust.
 Identities = 346/606 (58%), Positives = 475/606 (79%), Gaps = 9/606 (1%)

Query  1    MALSDVAVRQAKATGTDYTLPDFDGLSLAVSAAGTKTWHFRYTWLGRQKRMSLGVYPEIS  60
            MALSD++VRQAKA+   Y++PD DGL+L V+++G K+WH+RY WLG+QKR+SLG YPEI+
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  61   LreartrrdearaLVAKDINPQRQRTRDRQLATQAEQNTFQAVYEKWLKFREQGRLKRGR  120
            LREART RDEARAL+A++INP+ +R + R+    A + TF+AV++ W+  R +  LK GR
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKE-LKEGR  119

Query  121  QTTLATLPRIFGNDVLPTLGKRSIHVITRADLLEIVGRIEKRGAPSVAEKVRTWLNQLFR  180
            ++TL+ + RIF +DVLP+L + SI  I R++LL +++RIEKR A + AEKVRTWL QLFR
Sbjct  120  NSTLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFR  179

Query  181  YALVVVPGLERNPASDLDVVAMPQPPVRHNPFLRMSELPEFLQLLRKYPGRL-QTQLGVR  239
            YALV+V G+E NPA+DLDVVA P+P+V HNP+L+++ELPEFLQ LR Y  R  QTQLG+R
Sbjct  180  YALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIR  239

Query  240  MLFLTGVRTGELRLATPDQFHLDDGLWIIPPDVVKQLELKMQKENLRTEDIPPYIVPLSL  299
            +LFLTGVRTGELRLATPDQF+LD GLWIIPP++VKQL+  M+K   R +D+PPYIVPLSL
Sbjct  240  LLFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSL  299

Query  300  QAVEIVRHMLERFKQGQKHVFPGAKSLKQRISENTLNTAVKRLGYDGRLTGHGIRATLST  359
            QA+EIVR +L   + +Q+H++     LK+RISENTLN+A+KR+GY+++LTGHGIR+T+ST
Sbjct  300  QAIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTIST  359

Query  360  TLNELGYPDKWIDAQLSHVDPNPVRRTYNHAEYVEQRRCMMQDWADRLDLLEQGQLEAAS  419
            +LNE+GYP  W+DAQLSH DPN V  +YNHA YVE RR MMQDWADRLDLLEQGQ+EAAS
Sbjct  360  ALNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAAS  419

Query  420  NPLALHLEGLPMAGDGSNTQGSPASTTVQTLVLSKPHD---APPQGAIQMQRLSAVRAPK  476
              L++H+EG+P  ++  + ++  A+++   +    +     +P +G+I  QRLS V ++ 
Sbjct  420  AHLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPPSP  479

Query  477  T---EPTISNVQRERMILLDILESPHNLSVADYAKLAGKSRRWITYEVTAGNLLSISLGN  533
            T   EP +S +QRER  +L I ESP +L+V+ ++KLAGKS+  I  E+ AG+LLSISLGN
Sbjct  480  THAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLGN  539

Query  534  RGQRVPDWQLDPLKRRLVQTILKQTARGVDPWEIYHALTQPYDEFGGQSPIEAVTLETLE  593
            RGQRVPDWQL PLK++L Q +++Q +++ D+WE+Y+ LTQP  ++G++++I+ VT   L 
Sbjct  540  RGQRVPDWQLVPLKHKLAQVLMRQYPQA-DSWELYRMLTQPHPDLGDRAAIDIVTPSNLG  598

Query  594  MAVQVV  599
            M VQ++
Sbjct  599  MVVQII  604

32) PSF113_3288 in NC_016830


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  562 bits (2122),  Expect = 2e-161, Method: Compositional matrix adjust.
 Identities = 367/610 (61%), Positives = 488/610 (80%), Gaps = 4/610 (0%)

Query  1    MALSEMAVRHARITGNDYTLGDSDGLTLNVTARGGKVWLFRYYWAGVQKRMSLGSYPQIS  60
            MALS+++VR+A+ + + Y++ D+DGL L V++ GGK W +RYYW G QKR+SLG+YP+I+
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  61   LKEARVRRDEARALVAQGINPYEHRKQQRLAVHAAKEHTFEAVFNQWVEFRRLSLKEGRQ  120
            L+EAR  RDEARAL+AQGINP  +RKQ+R AV  A + TF AVF+ WVE R   LKEGR+
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  121  STLSQILRIFSKDVLPMLGGRSIYDINRHDLLDLLSRIEQRKALTTAEKCRTWFNQLFRY  180
            STLSQI RIF KDVLP L   SIYDI R +LL++L+RIE+R A+TTAEK RTW+ QLFRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  181  ALVKIEGLEHNPASDLDVVAFPKPPVTHNPFLRMDELPALMAALRNYGGAN-Qtrlglrl  239
            ALV +EG+E NPA+DLDVVA PKP+VTHNP+L++ ELP ++  LR Y     QT+LG+RL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  240  llltgvrtgelrlATPDQFDLEKRLWVIPAEVVKQLQLAMRKPGKQTQNVPPYIVPLSVQ  299
            L+LTGVRTGELRLATPDQFDL++ LW+IP+++VKQLQ  MRK+GK+ Q+VPPYIVPLS+Q
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  300  ALEIVRHLLDQVVPAQRYLFAHRSDLSKRISENTLNGALRRMGYADQLTGHGMRATISTA  359
            A+EIVR LL+ + PAQR L++HRS+L KRISENTLN+AL+RMGY D+LTGHG+R+TISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  360  LNEIGYPKVWVDAQLSHADPDKVSAAYNHAEYVEQRRTMMQDWANRLDLWGQGQLKAASS  419
            LNEIGYPK+WVDAQLSH+DP+KVS+AYNHA YVE RR MMQDWA+RLDL  QGQ+ AAS+
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  420  PLTIRlegaaslpslesasaNSIQFNGIFPMTTVSVPKASVSGEPALIVPHQSPVVPLSV  479
             LTI++EG ++++  + + A     ++      V+ P    + E ++   + S V P   
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPP--S  478

Query  480  PTEMPHKSHVSDIQRERAEMLAIYEAASNLPLIVFAKLAGKSRDQINRDIKArrllslsl  539
            PT+ P+ ++VS IQRER EMLAIYE++S+LP+ +F+KLAGKS+DQINR++KA +LLS+SL
Sbjct  479  PTHAPE-PEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISL  537

Query  540  GNRGQRIPDWQLDPLRHKLVLAALARFPDTGAWRLYRAVCEPHERLKRRAPIDVLTPENF  599
            GNRGQR+PDWQL PL+HKL    + ++P++++W LYR + +PH  L  RA+ID++TP N+
Sbjct  538  GNRGQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNL  597

Query  600  DATVRIVCSA  609
            +  V+I+ ++
Sbjct  598  GMVVQIIAGS  607

33) XC_1018 in NC_007086


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  552 bits (2085),  Expect = 2e-158, Method: Compositional matrix adjust.
 Identities = 339/622 (55%), Positives = 479/622 (78%), Gaps = 7/622 (1%)

Query  5    LTDMVVRQAKASDKPYTLADFDGLFLYVSPVGGKAWHFRYTWVGQRARISLGSYPELSLR  64
            L+D+ VRQAKA+ K Y+++D DGL L V+P GGK+WH+RY W+G++ RISLG+YPE++LR
Sbjct  3    LSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIGLR  62

Query  65   DAREFRDQARALVAKGINPRTDRKQKRQAIRLAGENTFMAVYEKWMEHRQLTLEEGRQSS  124
            +AR +RD+ARAL+A+GINP+TDRKQKR+A++LA++ TF AV++ W+EHR   L EGR+S+
Sbjct  63   EARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRNST  122

Query  125  LEQIRRVFKKDVFPYLKRYTIYEITRPVLLEVIGRIEKRESLSVAEKVRTWLKQLADYAM  184
            L QI+R+F KDV+P LK+ +IY+I RP LL V++RIEKRE+++ AEKVRTWL QL  YA+
Sbjct  123  LSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRYAL  182

Query  185  VVIPGMVEHPAIDLHVVAVPLPPVEHNPFLRMPELPLFLQTLRKYRGMQ-MTQLAIRLLL  243
            V++ GM  +PA DL+VVA P P+V HNP+L++PELP FLQ LR Y      TQL+IRLL+
Sbjct  183  VIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRLLF  242

Query  244  LTGVRTGELRLATPDQFDLEQGLWIIPVMSLkqrkmltkkkrkrVTDIPPYIVPLPVQAI  303
            LTGVRTGELRLATPDQFDL++GLWIIP   +KQ +   +K  KR  D+PPYIVPL++QAI
Sbjct  243  LTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQAI  302

Query  304  EIVRHMLDLFKPAQTYLFPGVKRITARMSENTVNRAIKRLGYDGRLTGHGIRATISTALN  363
            EIVR +L++ +PAQ  L+     +  R+SENT+N A+KR+GY+++LTGHGIR+TISTALN
Sbjct  303  EIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTALN  362

Query  364  ELGYPKVWVDAQLSHADPNRISATYNHAEYVEQRRLMMQDWADRLDLFEQNQVQIASTHL  423
            E+GYPK+WVDAQLSH+DPN++S++YNHA YVE RR MMQDWADRLDL+EQ QV+ AS+HL
Sbjct  363  EIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASAHL  422

Query  424  TIHLQGVPTIAGQ-KVTPLPALGQHAPIMLVAPNEQTMPAVGTGT--QRLSAVQMP--EY  478
            TIH++GVP++A + K  ++ A +  +P+  V +    + +   G   QRLS V  +  + 
Sbjct  423  TIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPPSPTHA  482

Query  479  ALPKISEVQRERLEVLDIFEGPDNLVVADYAKLAGKSRRWITYEIQARNLLSIQLGNKGQ  538
            + P +S +QRER E+L I+E+P +L V+ ++KLAGKS+  I  E++A +LLSI LGN+GQ
Sbjct  483  PEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNRGQ  542

Query  539  RVPVWQLNMFKRRLVQAVLKRLHRGVDTWDIYYALTRPREELDGKSPIEALTSDNQQAMV  598
            RVP WQL  +K++L Q VL R     D+W++Y  LT+P+ +L+++++I+ +T+ N   +V
Sbjct  543  RVPDWQLVPLKHKLAQ-VLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNLGMVV  601

Query  599  EAVCRAVSEATTPVVEKRVPIN  620
            + +  + ++A +P V    PI+
Sbjct  602  QIIAGSEPHANAPEVVPPRPIS  623

34) intS in NC_003902


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  552 bits (2085),  Expect = 2e-158, Method: Compositional matrix adjust.
 Identities = 339/622 (55%), Positives = 479/622 (78%), Gaps = 7/622 (1%)

Query  5    LTDMVVRQAKASDKPYTLADFDGLFLYVSPVGGKAWHFRYTWVGQRARISLGSYPELSLR  64
            L+D+ VRQAKA+ K Y+++D DGL L V+P GGK+WH+RY W+G++ RISLG+YPE++LR
Sbjct  3    LSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIGLR  62

Query  65   DAREFRDQARALVAKGINPRTDRKQKRQAIRLAGENTFMAVYEKWMEHRQLTLEEGRQSS  124
            +AR +RD+ARAL+A+GINP+TDRKQKR+A++LA++ TF AV++ W+EHR   L EGR+S+
Sbjct  63   EARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRNST  122

Query  125  LEQIRRVFKKDVFPYLKRYTIYEITRPVLLEVIGRIEKRESLSVAEKVRTWLKQLADYAM  184
            L QI+R+F KDV+P LK+ +IY+I RP LL V++RIEKRE+++ AEKVRTWL QL  YA+
Sbjct  123  LSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRYAL  182

Query  185  VVIPGMVEHPAIDLHVVAVPLPPVEHNPFLRMPELPLFLQTLRKYRGMQ-MTQLAIRLLL  243
            V++ GM  +PA DL+VVA P P+V HNP+L++PELP FLQ LR Y      TQL+IRLL+
Sbjct  183  VIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRLLF  242

Query  244  LTGVRTGELRLATPDQFDLEQGLWIIPVMSLkqrkmltkkkrkrVTDIPPYIVPLPVQAI  303
            LTGVRTGELRLATPDQFDL++GLWIIP   +KQ +   +K  KR  D+PPYIVPL++QAI
Sbjct  243  LTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQAI  302

Query  304  EIVRHMLDLFKPAQTYLFPGVKRITARMSENTVNRAIKRLGYDGRLTGHGIRATISTALN  363
            EIVR +L++ +PAQ  L+     +  R+SENT+N A+KR+GY+++LTGHGIR+TISTALN
Sbjct  303  EIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTALN  362

Query  364  ELGYPKVWVDAQLSHADPNRISATYNHAEYVEQRRLMMQDWADRLDLFEQNQVQIASTHL  423
            E+GYPK+WVDAQLSH+DPN++S++YNHA YVE RR MMQDWADRLDL+EQ QV+ AS+HL
Sbjct  363  EIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASAHL  422

Query  424  TIHLQGVPTIAGQ-KVTPLPALGQHAPIMLVAPNEQTMPAVGTGT--QRLSAVQMP--EY  478
            TIH++GVP++A + K  ++ A +  +P+  V +    + +   G   QRLS V  +  + 
Sbjct  423  TIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPPSPTHA  482

Query  479  ALPKISEVQRERLEVLDIFEGPDNLVVADYAKLAGKSRRWITYEIQARNLLSIQLGNKGQ  538
            + P +S +QRER E+L I+E+P +L V+ ++KLAGKS+  I  E++A +LLSI LGN+GQ
Sbjct  483  PEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNRGQ  542

Query  539  RVPVWQLNMFKRRLVQAVLKRLHRGVDTWDIYYALTRPREELDGKSPIEALTSDNQQAMV  598
            RVP WQL  +K++L Q VL R     D+W++Y  LT+P+ +L+++++I+ +T+ N   +V
Sbjct  543  RVPDWQLVPLKHKLAQ-VLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNLGMVV  601

Query  599  EAVCRAVSEATTPVVEKRVPIN  620
            + +  + ++A +P V    PI+
Sbjct  602  QIIAGSEPHANAPEVVPPRPIS  623

35) Alide2_1967 in NC_015422


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  551 bits (2080),  Expect = 4e-158, Method: Compositional matrix adjust.
 Identities = 332/614 (55%), Positives = 470/614 (77%), Gaps = 7/614 (1%)

Query  2    LSDLMVRQAKATGNTYTLADSDGLSLFVSANGAKAWHFRFTWGGKRDRMSFGSYPALSLK  61
            LSDL VRQAKA+ +TY+++D+DGL+L V++ G+K+WH+R+ W GK+ R+S+G+YP ++L+
Sbjct  3    LSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIGLR  62

Query  62   EARELRDEARNLLAKGVNPHSERKRKRHAIVLAGEHTFQAVYDQWLAHRRLSLEEGRQTS  121
            EAR LRDEAR LLA+G+NPH++RK+KRHA+ LA++ TF+AV+D W+ HR   L EGR+++
Sbjct  63   EARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRNST  122

Query  122  LEQIARVFKKDVFPVLRHLTIYDITRAHLLDIIGKVEKRGSLSVAEKLRTWFTQLFTYAT  181
            L QI R+F KDV+P L++++IYDI R++LL++++++EKR +++ AEK+RTW+ QLF YA 
Sbjct  123  LSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRYAL  182

Query  182  VAIPNMHDNPSKDLEVVALPLPPVDHNPFLRMPELPIMLQTLRKYRGRL-NTQLGLRLLM  240
            V +  M+ NP+ DL+VVA P P+V HNP+L++PELP  LQ LR Y  R  +TQLG+RLL 
Sbjct  183  VIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRLLF  242

Query  241  LTGVRTGELRFATPDQFDLEQGLWIIPVArlkqralltkkkrkrlVDIPPYIVPLPVQAQ  300
            LTGVRTGELR+ATPDQFDL++GLWIIP   +KQ     +K  KR  D+PPYIVPL++QA 
Sbjct  243  LTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQAI  302

Query  301  EIVRHLLDQCKPAQVYLIPGDWCLKHPVSENTFNGALKRMGYEDQLTGHGIRATISTALN  360
            EIVR LL+  +PAQ  L+     LK  +SENT+N+ALKRMGYED+LTGHGIR+TISTALN
Sbjct  303  EIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTALN  362

Query  361  ELGYPKKWVDAQLSHADPDKISATYNHAEYVEQRRVMMQDWADRLDLFEQNQVEVASRHL  420
            E+GYPK WVDAQLSH+DP+K+S++YNHA YVE RR MMQDWADRLDL+EQ QVE AS HL
Sbjct  363  EIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASAHL  422

Query  421  TITLQGLPTIAGQ---AAVQPPVVDLTAPQLIVtaptpdmpaapaSVQRLSAVRMP--EY  475
            TI ++G+P++A +    A+ ++      P ++ T+       +  + QRLS V  +  + 
Sbjct  423  TIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPPSPTHA  482

Query  476  ARPRLSEVQRERLRVLETFEAPHNLSVADYAKLAGKSRRWITYEIQAGNLLSIHMGNRGQ  535
            + P +S +QRER  +L  +E+P +L+V+ ++KLAGKS+  I  E++AG+LLSI +GNRGQ
Sbjct  483  PEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNRGQ  542

Query  536  RMPDWQLDPLKRRLVQFVLKQVPRGLDTWAIYHALLQPYDALGGRSAIEAVNPKNLHLAA  595
            R+PDWQL PLK++L Q +++Q P++ D+W +Y+ L QP   LG+R+AI+ V P NL +  
Sbjct  543  RVPDWQLVPLKHKLAQVLMRQYPQA-DSWELYRMLTQPHPDLGDRAAIDIVTPSNLGMVV  601

Query  596  RLVAAQSIAADDPE  609
            +++A+    A+ PE
Sbjct  602  QIIAGSEPHANAPE  615

36) intB13 in NC_010170


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  548 bits (2069),  Expect = 3e-157, Method: Compositional matrix adjust.
 Identities = 380/605 (63%), Positives = 488/605 (81%), Gaps = 7/605 (1%)

Query  1    MALSDMAARNAKATGKAYTISDIDGLSLAVSPTGGKTWHYRYYWAGKQKRMSLGTYPEVG  60
            MALSD++ R+AKA+ K+Y+I+D DGL+L V+PTGGK+WH RYYW GKQKR+SLG YPE+G
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  61   lrearglrdaarallaKGINPRADRKQKRQAVRLADEHTFQAVFDKWVEHRRLVLKEGRQ  120
            LREAR LRD ARALLA+GINP++DRKQKR+AV+LA + TF+AVFD WVEHR   LKEGR+
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  121  STLTQILRIFKKDILPTLGKRPVYEIQRPDLLEVVAKIERRKALSVAEKVRTWFRQMFRY  180
            STL+QI RIF KD+LP+L + ++Y+I+RP+LL V+A+IE+R A++ AEKVRTW+ Q+FRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  181  ALIIVPGLPQNPAFDLDVVALPMPPVRHNPFLRMDELPAMLSRLRKYHgrl-qtqlglrl  239
            AL+IV G+  NPA DLDVVA P P+V HNP+L++ ELP  L +LR Y+ R  QTQLG+RL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  240  lfltgvrtgELRLATPDQFHLDQGLWIIPPEVVKQLQLEMRKEGKRPGDIPPYIVPLSAQ  299
            LFLTGVRTGELRLATPDQF+LD+GLWIIPP++VKQLQ EMRK GKRP D+PPYIVPLS Q
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  300  AMEIVQHMLEQFKPAQRYLFSHGWDLKKRISENTLNQALKRMGYTDQLTGHGIRATISTA  359
            A+EIV+ +L   +PAQR L++H  +LKKRISENTLN ALKRMGY D+LTGHGIR+TISTA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  360  LNEIGYPKVWVDAQLSHSDPDKVSAAYNHAEYVEQRRRMMQDWADRLDLFEQHQVEAASM  419
            LNEIGYPK+WVDAQLSHSDP+KVS+AYNHA YVE RRRMMQDWADRLDL+EQ QVEAAS 
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  420  HLTVHLegvpevpdevpegaeaaippapiVLVSKPGAGMPTLPDSV---HRLSAITGPRT  476
            HLT+H+EGVP +++E   +A  A ++AP V    + + + T  ++    +RLS +  + T
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPPSPT  480

Query  477  P---PVLSESQREQLERLDIFNSPHLLSAADFAKMAGKSRRWISYEISGRKMLALSLGNL  533
                P +S  QRE+ E L I++SP  L+ + F+K+AGKS+  I+ E+ + K+L++SLGN 
Sbjct  481  HAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR  540

Query  534  GQRVPDWHFTPLKHKLIQAVLKFAREADSWEIYRALSQPHDDFKGLAPVDAVTAENLHEV  593
            GQRVPDW++ PLKHKL Q +++   +ADSWE+YR L+QPH D+ + A++D VT+ NL  V
Sbjct  541  GQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNLGMV  600

Query  594  VMAVC  598
            V  + 
Sbjct  601  VQIIA  605

37) Rpic12D_0697 in NC_012856


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  547 bits (2063),  Expect = 8e-157, Method: Compositional matrix adjust.
 Identities = 367/607 (61%), Positives = 495/607 (82%), Gaps = 3/607 (0%)

Query  1    MALSDLVVRQAKATGKAYTLPDIDGLSLAVTTTGSKSWHFRYYWMKEPKRMSLGTYPEVS  60
            MALSDL VRQAKA+ K+Y++PD DGL+L V+ TG+KSWH+RYYW+   KR+SLG YPE++
Sbjct  1    MALSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIG  60

Query  61   lrearalrdearalVAKDINPRLHRKQKRAAVKLAGENTFEAIYKKWLAHRELGLKKGRQ  120
            LREAR+LRDEARAL+A++INP+ +RKQKR AVKLA++ TF A++  W+ HR   LK GR+
Sbjct  61   LREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKELKEGRN  120

Query  121  TTLSILPRVFAKDVLPLLGKRSIYDIKRPDLLEVIARIERRKALSVAEKVRTWFNQMFRY  180
            +TLS + R+F KDVLP L + SIYDI+RP+LL V+ARIE+R A++ AEKVRTW+ Q+FRY
Sbjct  121  STLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRY  180

Query  181  ALVVVPGLEQNPASDLDVVALPLPPVNHNPFLRMAELPKLLQRLRKYrgrl-qtqlglrl  239
            ALV+V G+E NPA+DLDVVA P P+V HNP+L+++ELP +LQ+LR Y  R  QTQLG+RL
Sbjct  181  ALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRL  240

Query  240  llftgvrtgELRLATPDQFDLDRGLWIIPPEVVKQLQVDMRRKRQLPKDIPPYIVPLSVQ  299
            L++TGVRTGELRLATPDQFDLDRGLWIIPP++VKQLQ +MR+  + P+D+PPYIVPLS+Q
Sbjct  241  LFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQ  300

Query  300  AIEIVRHLLEQFKPAQHYLFRHDSELKKRMSENTLNGALKRMGYRDLLTGHGIRGTMSTA  359
            AIEIVR LL   +PAQ+ L+ H SELKKR+SENTLN+ALKRMGY D LTGHGIRGT+STA
Sbjct  301  AIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTA  360

Query  360  LNEIGYPKVWVDAQLSHVDPNKVSATYNHAEYVEQRRRMMQDWADRLDLFEQNMVEAASM  419
            LNEIGYPK+WVDAQLSH DPNKVS++YNHA YVE RRRMMQDWADRLDL+EQ  VEAAS 
Sbjct  361  LNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASA  420

Query  420  PLTIHLEGVPVLSDEEaasappkaaatsapLLIVTKPGDAMPLVSAET-HRLPAVPLPRS  478
             LTIH+EGVP +++E+ + A   A+++++   +V+ P    P  ++ T +RL+ VP + +
Sbjct  421  HLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPPSPT  480

Query  479  VMEEP-LSDIQRQRMELVDVFEAPHNLPVAEYAKMAGKSRRWISYEIKagnllalnlgnR  537
               EP +S IQR+R E++ ++E+P +LPV+ ++K+AGKS+  I+ E+KAG+LL+++LGNR
Sbjct  481  HAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLGNR  540

Query  538  GQRVPDWHLDPVKHALIQAVLKLTRGADPWQIYNALLQPRAMLRGRSALESVSATNLDKI  597
            GQRVPDW+L P+KH L Q +++    AD+W++Y  L QP++ L +R+A++ V+++NL+ +
Sbjct  541  GQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDRAAIDIVTPSNLGMV  600

Query  598  IMAVSTT  604
            +  ++ +
Sbjct  601  VQIIAGS  607

38) PSTAB_1251 in NC_015740


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  529 bits (1995),  Expect = 2e-151, Method: Compositional matrix adjust.
 Identities = 343/561 (62%), Positives = 461/561 (83%), Gaps = 12/561 (2%)

Query  1    MSLGTYPEVTLREARSLRDEARALLAKGTNPRVHRKQKRTAVRLADENTFEAVYRKWLKH  60
            +SLG YPE+ LREAR+LRDEARALLA+G NP+ +RKQKR AV+LA + TF AV+  W+ H
Sbjct  51   ISLGNYPEIGLREARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEH  110

Query  61   RGLSLKEGRQTTLSILPRIFDKDVLPALGKRSIYEIKRPDLLEVIAKIEKRRALSVAEKV  120
            R+  LKEGR++TLS + RIF+KDVLP+L + SIY+I+RP+LL V+A+IEKR A++ AEKV
Sbjct  111  RAKELKEGRNSTLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKV  170

Query  121  RTWFNQLFRYALVIVPSLEQNPASDLDVVALPLPPVNHNPFLRMAELPKLLQRLRSYrgr  180
            RTW+ QLFRYALVIV ++E NPA+DLDVVA P P+V HNP+L+++ELP +LQ+LR Y  R
Sbjct  171  RTWLGQLFRYALVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPR  230

Query  181  r-qtqlglrlllltgvrtgelrQATPDQFDLDRGLWIIPPDVVKQLQLDMRKKRQQAKDI  239
              QTQLG+RLL+LTGVRTGELR ATPDQFDLDRGLWIIPP++VKQLQ +MRK  ++++D+
Sbjct  231  GWQTQLGIRLLFLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDV  290

Query  240  PPYIVPLSIQAMEIVRHLLDEFKPAQRHLFRHDSDLKKRISENTLNGALKRMGYQERLTG  299
            PPYIVPLS+QA+EIVR LL+  +PAQRHL+ H S+LKKRISENTLN+ALKRMGY+++LTG
Sbjct  291  PPYIVPLSLQAIEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTG  350

Query  300  HGIRGTMSTALNEIGYPKVWVDAQLSHVDPNKVSATYNHAQYVEQRRRMMQDWADRLDLF  359
            HGIRGT+STALNEIGYPK+WVDAQLSH DPNKVS++YNHA+YVE RRRMMQDWADRLDL+
Sbjct  351  HGIRGTISTALNEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLL  410

Query  360  EQNQVEAASMPLTVHLEGVPAFPNEQtasapstpvaaspIL------LVTKPGDAMPLVS  413
            EQ QVEAAS  LT+H+EGVPA ++E+ + A  ++ +A+P+       +V  P ++    +
Sbjct  411  EQGQVEAASAHLTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEG----G  466

Query  414  AAAHRLPAVPPPRSAAPLVP-SDIQRERMELFDVFEAPHNLPVAAFAKMAGKSRRWISYE  472
             + +RL+ VPP+ + AP    S IQRER E++ ++E+P +LPV+ F+K+AGKS+  I+ E
Sbjct  467  ITFQRLSQVPPSPTHAPEPEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRE  526

Query  473  IKAGNLLALNVGNRGQRVPDWHLDPLKHELIQSVLKLTRGADPWQIYHALLQPRSMLRGR  532
            +KAG+LL++++GNRGQRVPDW+L PLKH L Q +++    AD+W++Y+ L QP++ L +R
Sbjct  527  LKAGKLLSISLGNRGQRVPDWQLVPLKHKLAQVLMRQYPQADSWELYRMLTQPHPDLGDR  586

Query  533  SALEGVTASNLDKLVMAVSTA  553
            +A++ VT+SNL+ +V  ++ +
Sbjct  587  AAIDIVTPSNLGMVVQIIAGS  607

39) intB13 in NC_010170


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  496 bits (1871),  Expect = 1e-141, Method: Compositional matrix adjust.
 Identities = 338/646 (53%), Positives = 488/646 (76%), Gaps = 20/646 (3%)

Query  2    LSDLQVRQAKVTGKAYSLVDFDGLYFYISATGFKAWHFRFTWGGKRERMSFGGYPALSLK  61
            LSDL VRQAK + K+YS+ D DGL + +++TG K+WH+R+ W GK+ R+S+G YP ++L+
Sbjct  3    LSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIGLR  62

Query  62   DARNLRDEARAMLAKGINPHSERKRKRHAIVLAGEHTFQAIYDKWLAHRSLSLENEGRQS  121
            +AR LRDEARA+LA+GINPH++RK+KRHA+ LA++ TF+A++D W+ HR+  L +EGR+S
Sbjct  63   EARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKEL-KEGRNS  121

Query  122  TPKQIGRVFAKDVFPVLRHLTIYDVTRAHLLDIIGRVEKRGSLSVAEKLRTWFSQLFTYA  181
            T  QI R+F KDV+P L++++IYD+ R++LL++++R+EKR +++ AEK+RTW++QLF YA
Sbjct  122  TLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRYA  181

Query  182  SVVVPNMGDNPAKDLDVVAMPLPPVENNPFLRMPELPAMLQTLRKYSgrl-ntqlglrll  240
             V+V  M  NPA DLDVVA P P+V +NP+L++PELP  LQ LR Y+ R  +TQLG+RLL
Sbjct  182  LVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRLL  241

Query  241  lltgvrtgelrYATPDQFDLERGLWIIPVVrlkqrkqltkkkrqrFADIPPYIVPLSLQA  300
            +LTGVRTGELR ATPDQFDL+RGLWIIP   +KQ ++  +K  +R  D+PPYIVPLSLQA
Sbjct  242  FLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQA  301

Query  301  QEVVRHLLGNLKPAQVYLIPGDWCLKNPLSENTLNGALKRMGYEDQLTGHGVRATISTAL  360
             E+VR LLG ++PAQ  L+     LK+ +SENTLN+ALKRMGYED+LTGHG+R+TISTAL
Sbjct  302  IEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTAL  361

Query  361  NELGYPPKWVDAQLSHADPDRISATYNHAEYVEQRRVMMQDWADRLDLFEQNQVEVASTH  420
            NE+GYP  WVDAQLSH+DP+++S++YNHA YVE RR MMQDWADRLDL+EQ QVE AS+H
Sbjct  362  NEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASAH  421

Query  421  LTITLQGLPTIAGqaaaqppalnpnapqlIvapapdapavpaS---VY-RLSAV-----H  471
            LTI ++G+P++A +  +++    ++AP +    A      P      + RLS V     H
Sbjct  422  LTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPPSPTH  481

Query  472  LPEYARPTLSEVQRERLQLLEIFEASHNLSVADYAKLVGKSRRWITYEIQAGNLLSIHLG  531
             PE   P +S +QRER ++L I+E++ +L+V+ ++KL GKS+  I  E++AG+LLSI LG
Sbjct  482  APE---PEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLG  538

Query  532  HRGQRVPDWQLDPIKRKLIQAVLKLVPRGIDTWHIYHALLRPYDALGKCPVIEAVDPTNL  591
            +RGQRVPDWQL P+K+KL Q +++  P++ D+W++Y+ L +P   LG  + I+ V P+NL
Sbjct  539  NRGQRVPDWQLVPLKHKLAQVLMRQYPQA-DSWELYRMLTQPHPDLGDRAAIDIVTPSNL  597

Query  592  HLAARLVAA---HTIETDELAEQSEASPVLARQTVERLVKTAMLVD  634
             +  +++A+   H+   + ++ ++ +  V  RQ+V RL+ +A+ +D
Sbjct  598  GMVVQIIAGSEPHANAPEVVPPRPISEEV--RQSVRRLMESAVALD  641

40) Daci_4139 in NC_010002


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  496 bits (1871),  Expect = 1e-141, Method: Compositional matrix adjust.
 Identities = 338/646 (53%), Positives = 488/646 (76%), Gaps = 20/646 (3%)

Query  2    LSDLQVRQAKVTGKAYSLVDFDGLYFYISATGFKAWHFRFTWGGKRERMSFGGYPALSLK  61
            LSDL VRQAK + K+YS+ D DGL + +++TG K+WH+R+ W GK+ R+S+G YP ++L+
Sbjct  3    LSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIGLR  62

Query  62   DARNLRDEARAMLAKGINPHSERKRKRHAIVLAGEHTFQAIYDKWLAHRSLSLENEGRQS  121
            +AR LRDEARA+LA+GINPH++RK+KRHA+ LA++ TF+A++D W+ HR+  L +EGR+S
Sbjct  63   EARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKEL-KEGRNS  121

Query  122  TPKQIGRVFAKDVFPVLRHLTIYDVTRAHLLDIIGRVEKRGSLSVAEKLRTWFSQLFTYA  181
            T  QI R+F KDV+P L++++IYD+ R++LL++++R+EKR +++ AEK+RTW++QLF YA
Sbjct  122  TLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRYA  181

Query  182  SVVVPNMGDNPAKDLDVVAMPLPPVENNPFLRMPELPAMLQTLRKYSgrl-ntqlglrll  240
             V+V  M  NPA DLDVVA P P+V +NP+L++PELP  LQ LR Y+ R  +TQLG+RLL
Sbjct  182  LVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRLL  241

Query  241  lltgvrtgelrYATPDQFDLERGLWIIPVVrlkqrkqltkkkrqrFADIPPYIVPLSLQA  300
            +LTGVRTGELR ATPDQFDL+RGLWIIP   +KQ ++  +K  +R  D+PPYIVPLSLQA
Sbjct  242  FLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQA  301

Query  301  QEVVRHLLGNLKPAQVYLIPGDWCLKNPLSENTLNGALKRMGYEDQLTGHGVRATISTAL  360
             E+VR LLG ++PAQ  L+     LK+ +SENTLN+ALKRMGYED+LTGHG+R+TISTAL
Sbjct  302  IEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTAL  361

Query  361  NELGYPPKWVDAQLSHADPDRISATYNHAEYVEQRRVMMQDWADRLDLFEQNQVEVASTH  420
            NE+GYP  WVDAQLSH+DP+++S++YNHA YVE RR MMQDWADRLDL+EQ QVE AS+H
Sbjct  362  NEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASAH  421

Query  421  LTITLQGLPTIAGqaaaqppalnpnapqlIvapapdapavpaS---VY-RLSAV-----H  471
            LTI ++G+P++A +  +++    ++AP +    A      P      + RLS V     H
Sbjct  422  LTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPPSPTH  481

Query  472  LPEYARPTLSEVQRERLQLLEIFEASHNLSVADYAKLVGKSRRWITYEIQAGNLLSIHLG  531
             PE   P +S +QRER ++L I+E++ +L+V+ ++KL GKS+  I  E++AG+LLSI LG
Sbjct  482  APE---PEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLG  538

Query  532  HRGQRVPDWQLDPIKRKLIQAVLKLVPRGIDTWHIYHALLRPYDALGKCPVIEAVDPTNL  591
            +RGQRVPDWQL P+K+KL Q +++  P++ D+W++Y+ L +P   LG  + I+ V P+NL
Sbjct  539  NRGQRVPDWQLVPLKHKLAQVLMRQYPQA-DSWELYRMLTQPHPDLGDRAAIDIVTPSNL  597

Query  592  HLAARLVAA---HTIETDELAEQSEASPVLARQTVERLVKTAMLVD  634
             +  +++A+   H+   + ++ ++ +  V  RQ+V RL+ +A+ +D
Sbjct  598  GMVVQIIAGSEPHANAPEVVPPRPISEEV--RQSVRRLMESAVALD  641

41) NCGM2_1452 in NC_017549


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  487 bits (1837),  Expect = 6e-139, Method: Compositional matrix adjust.
 Identities = 338/647 (53%), Positives = 488/647 (76%), Gaps = 18/647 (2%)

Query  2    LSDLQVRQAKVTGKAYSLVDFDGLYFHISATGFKAWHFRFTWGGKRERMSFGGYPALSLK  61
            LSDL VRQAK + K+YS+ D DGL + +++TG K+WH+R+ W GK+ R+S+G YP ++L+
Sbjct  3    LSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIGLR  62

Query  62   DARNLRDEARAMLAKGINPHSERKRKRHAIVLAGEHTFQAIYDKWLAHRSLSLENEGRQS  121
            +AR LRDEARA+LA+GINPH++RK+KRHA+ LA++ TF+A++D W+ HR+  L +EGR+S
Sbjct  63   EARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKEL-KEGRNS  121

Query  122  TPKQIGRVFAKDVFPVLRHLTIYDVTRAHLLDIIGRVEKRGSLSVAEKLRTWFSQLFTYA  181
            T  QI R+F KDV+P L++++IYD+ R++LL++++R+EKR +++ AEK+RTW++QLF YA
Sbjct  122  TLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRYA  181

Query  182  SVVVPNMGDNPAKDLDVVAMPLPPVENNPFLRMPELPAMLQTLRKYSgrl-ntqlglrll  240
             V+V  M  NPA DLDVVA P P+V +NP+L++PELP  LQ LR Y+ R  +TQLG+RLL
Sbjct  182  LVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRLL  241

Query  241  lltgvrtgelrYATPDQFDLERGLWIIPVVrlkqrkqltkkkrqrFADIPPYIVPLSLQA  300
            +LTGVRTGELR ATPDQFDL+RGLWIIP   +KQ ++  +K  +R  D+PPYIVPLSLQA
Sbjct  242  FLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQA  301

Query  301  QEVVRHLLGNLKPAQVYLIPGDWCLKNPLSENTLNGALKRMGYEDQLTGHGVRATISTAL  360
             E+VR LLG ++PAQ  L+     LK+ +SENTLN+ALKRMGYED+LTGHG+R+TISTAL
Sbjct  302  IEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTAL  361

Query  361  NELGYPPKWVDAQLSHADPDRISATYNHAEYVEQRRVMMQDWADRLDLFEQNQVEVASTH  420
            NE+GYP  WVDAQLSH+DP+++S++YNHA YVE RR MMQDWADRLDL+EQ QVE AS+H
Sbjct  362  NEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASAH  421

Query  421  LTITLQGLPTIAGqaaaqppalnpnapqlIvapapdapavpaS---VY-RLSAV-----H  471
            LTI ++G+P++A +  +++    ++AP +    A      P      + RLS V     H
Sbjct  422  LTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPPSPTH  481

Query  472  LPEYARPTLSEVQRERLQLLEMFEAPHNLSVADYAKLVGKSRRWITYEIQAGNLLSIHLG  531
             PE   P +S +QRER ++L ++E+P +L+V+ ++KL GKS+  I  E++AG+LLSI LG
Sbjct  482  APE---PEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLG  538

Query  532  HRGQRVPDWQLDPIKRKLIQAVLKLVPRGIDTWHIYHALLRPYDALGKCPVIEAVDPTNl  591
            +RGQRVPDWQL P+K+KL Q +++  P++ D+W++Y+ L +P   LG  + I+ V P+NL
Sbjct  539  NRGQRVPDWQLVPLKHKLAQVLMRQYPQA-DSWELYRMLTQPHPDLGDRAAIDIVTPSNL  597

Query  592  hlaarlvaahaIETDELAEQSEASPVLA--RQTVERLVKTAMLVDTP  636
             +  +++A+   +++  +E   + P+    RQ+V RL+ +A+ +D +
Sbjct  598  GMVVQIIAGSEPHANA-PEVVPPRPISEEVRQSVRRLMESAVALDGA  643

42) PSTAA_1290 in NC_017532


> AF440523|6|G1|24461523|AAN62094.1|Pseudomonas_aeruginosa_C|+|27514..29445|int|-|putative 
integrase
Length=643

 Score =  486 bits (1833),  Expect = 1e-138, Method: Compositional matrix adjust.
 Identities = 338/645 (53%), Positives = 487/645 (76%), Gaps = 18/645 (2%)

Query  2    LSDLQVRQAKVTGKAYSLVDFDGLYFYISATGFKAWHFRFTWGGKRERMSFGGYPALSLK  61
            LSDL VRQAK + K+YS+ D DGL + +++TG K+WH+R+ W GK+ R+S+G YP ++L+
Sbjct  3    LSDLTVRQAKAAKKTYSIPDTDGLGLVVAPTGGKSWHLRYYWLGKQKRISLGNYPEIGLR  62

Query  62   DARNLRDEARAMLAKGINPHSERKRKRHAIVLAGEHTFQAIYDKWLAHRSLSLENEGRQS  121
            +AR LRDEARA+LA+GINPH++RK+KRHA+ LA++ TF+A++D W+ HR+  L +EGR+S
Sbjct  63   EARTLRDEARALLAQGINPHTDRKQKRHAVKLASDYTFKAVFDAWVEHRAKEL-KEGRNS  121

Query  122  TPKQIGRVFAKDVFPVLRHLTIYDVTRAHLLDIIGRVEKRGSLSVAEKLRTWFSQLFTYA  181
            T  QI R+F KDV+P L++++IYD+ R++LL++++R+EKR +++ AEK+RTW++QLF YA
Sbjct  122  TLSQIKRIFEKDVLPSLKQMSIYDIRRPQLLGVLARIEKREAFTTAEKVRTWLGQLFRYA  181

Query  182  SVVVPNMGDNPAKDLDVVAMPLPPVENNPFLRMPELPAMLQTLRKYSgrl-ntqlglrll  240
             V+V  M  NPA DLDVVA P P+V +NP+L++PELP  LQ LR Y+ R  +TQLG+RLL
Sbjct  182  LVIVEGMEANPATDLDVVAEPKPAVTHNPYLHLPELPEFLQKLRLYNPRGWQTQLGIRLL  241

Query  241  lltgvrtgelrYATPDQFDLERGLWIIPVVrlkqrkqltkkkrqrFADIPPYIVPLSLQA  300
            +LTGVRTGELR ATPDQFDL+RGLWIIP   +KQ ++  +K  +R  D+PPYIVPLSLQA
Sbjct  242  FLTGVRTGELRLATPDQFDLDRGLWIIPPQIVKQLQDEMRKAGKRPQDVPPYIVPLSLQA  301

Query  301  QEVVRHLLGNLKPAQVYLIPGDWCLKNPLSENTLNGALKRMGYEDQLTGHGVRATISTAL  360
             E+VR LLG ++PAQ  L+     LK+ +SENTLN+ALKRMGYED+LTGHG+R+TISTAL
Sbjct  302  IEIVRYLLGVMRPAQRHLLTHRSELKKRISENTLNAALKRMGYEDKLTGHGIRGTISTAL  361

Query  361  NELGYPPKWVDAQLSHADPDRISATYNHAEYVEQRRVMMQDWADRLDLFEQNQVEVASTH  420
            NE+GYP  WVDAQLSH+DP+++S++YNHA YVE RR MMQDWADRLDL+EQ QVE AS+H
Sbjct  362  NEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLDLLEQGQVEAASAH  421

Query  421  LTITLQGLPTIAGqaaaqppalnpnapqlIvapapdapavpaS---VY-RLSAV-----H  471
            LTI ++G+P++A +  +++    ++AP +    A      P      + RLS V     H
Sbjct  422  LTIHIEGVPAMAEEDKPDAIVAASSAPPVPPVVATPIVVTPNEGGITFQRLSQVPPSPTH  481

Query  472  LPEYARPTLSEVQRERLQLLEIFEASHNLSVADYAKLVGKSRRWITYEIQAGNLLSIHLG  531
             PE   P +S +QRER ++L I+E++ +L+V+ ++KL GKS+  I  E++AG+LLSI LG
Sbjct  482  APE---PEVSAIQREREEMLAIYESPSSLPVPLFGKLAGKSKDQINRELKAGKLLSISLG  538

Query  532  HRGQRVPDWQLDPIKRKLIQAVLKLVPRGIDTWHIYHALLRPYDALGKCPVIEAVDPTNl  591
            +RGQRVPDWQL P+K+KL Q +++  P++ D+W++Y+ L +P   LG  + I+ V P+NL
Sbjct  539  NRGQRVPDWQLVPLKHKLAQVLMRQYPQA-DSWELYRMLTQPHPDLGDRAAIDIVTPSNL  597

Query  592  hlaarlvaahaIETDELAEQSEASPVLA--RQTVERLVKTAMLVD  634
             +  +++A+   +++  +E   + P+    RQ+V RL+ +A+ +D
Sbjct  598  GMVVQIIAGSEPHANA-PEVVPPRPISEEVRQSVRRLMESAVALD  641