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PAthogenisity Island DataBase (PAI DB)

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Homologs of hrpU1 gene of U07346

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) Psyr_1211
( YP_234303.1 )

type III secretion protein HrpP

NC_007005
(Pseudomonas syringae B728a)

3e-71

2) hrpP
( YP_273547.1 )

type III secretion protein HrpP

NC_005773
(Pseudomonas syringae 1448A)

8e-62

3) hrpP
( NP_791225.1 )

type III secretion protein HrpP

NC_004578
(Pseudomonas syringae DC3000)

3e-50

• Sequence Alignments

1) Psyr_1211 in NC_007005


> U07346|6|G5|507392|AAA81944.1|Pseudomonas_syringae_pv._syringae_Pss61|+|2998..3576|hrpU1|-|HrpU1
Length=192

 Score =  260 bits (972),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 159/168 (95%), Positives = 165/168 (99%), Gaps = 0/168 (0%)

Query  23   RALPSLRQPDRSDDQPPAFAGAPRGDVQKVRFALNRSVTDSPMSADGMFFSQLLIPQVGE  82
            R+LPS RQP R DDQPPAF+G+PRG+VQKVRFALNRSVTDSPMSADGMFFSQLLIPQVGE
Sbjct  25   RPLPSRRQPARFDDQPPAFTGTPRGHVQKVRFALNRSVTDSPMSADGMFFSQLLIPQVGE  84

Query  83   EPDQQGFGGSGVAFSAQSENVPTQLIDELAQRLPDQPDGPLAFSLLMPNLGSVRVNASKS  142
            EPDQQGFGGSGVAFSAQSENVPTQLIDELAQRLPDQPDGPLAFSLLMPNLGSVRVNASKS
Sbjct  85   EPDQQGFGGSGVAFSAQSENVPTQLIDELAQRLPDQPDGPLAFSLLMPNLGSVRVNASKS  144

Query  143  ENRWSIQLGFGRRDVLKRLQGQVGACRDSLAQALGQDVELDMHEDFTA  190
            ENRW+IQLGFGRRDVLKRLQGQVGACR+SLAQALGQDVELDMHEDFTA
Sbjct  145  ENRWNIQLGFGRRDVLKRLQGQVGACRESLAQALGQDVELDMHEDFTA  192

2) hrpP in NC_005773


> U07346|6|G5|507392|AAA81944.1|Pseudomonas_syringae_pv._syringae_Pss61|+|2998..3576|hrpU1|-|HrpU1
Length=192

 Score =  229 bits (853),  Expect = 8e-62, Method: Compositional matrix adjust.
 Identities = 134/190 (71%), Positives = 169/190 (89%), Gaps = 0/190 (0%)

Query  1    MTAPIKHPAKAPTAPPVVHATQPSAPAQRAPDKADDKPPAFGSTTRTDMPKVRFAQNRSA  60
            MTAPIK PAKAP AP+   A+  + P++R P + DD+PPAF +T R ++ KVRFA NRS 
Sbjct  3    MTAPIKTPAKAPPAPSAPPAASRPLPSRRQPARFDDQPPAFTGTPRGHVQKVRFALNRSV  62

Query  61   TETPESADGLFFSQLLIPQVGEEPDQQGFGGSSIALPAHAENVPTQLIDELAQRLPEQPA  120
            T++P SADG+FFSQLLIPQVGEEPDQQGFGGS++A++A++ENVPTQLIDELAQRLP+QP 
Sbjct  63   TDSPMSADGMFFSQLLIPQVGEEPDQQGFGGSGVAFSAQSENVPTQLIDELAQRLPDQPD  122

Query  121  GPLAFTLLMPSLGTVRVNAEKTEHRWSIQLGFARRDVLKRLQGHTGACRDSLSRALGHDV  180
            GPLAF+LLMP+LG+VRVNA K+E+RW+IQLGF+RRDVLKRLQG+ GACR+SL++ALG+DV
Sbjct  123  GPLAFSLLMPNLGSVRVNASKSENRWNIQLGFGRRDVLKRLQGQVGACRESLAQALGQDV  182

Query  181  ELDLHEDLAA  190
            ELD+HED++A
Sbjct  183  ELDMHEDFTA  192

3) hrpP in NC_004578


> U07346|6|G5|507392|AAA81944.1|Pseudomonas_syringae_pv._syringae_Pss61|+|2998..3576|hrpU1|-|HrpU1
Length=192

 Score =  191 bits (707),  Expect = 3e-50, Method: Compositional matrix adjust.
 Identities = 111/157 (71%), Positives = 142/157 (91%), Gaps = 0/157 (0%)

Query  33   FGEKRPASGGLGRGDVQTSRSVLSKSLQDTPMSADGMFFSQLLVPPVSAEPgqqgfgggg  92
            F+++ PA  G  RG+VQ  R  L++S+ D+PMSADGMFFSQLL+P V+ EP+QQGFGG+G
Sbjct  36   FDDQPPAFTGTPRGHVQKVRFALNRSVTDSPMSADGMFFSQLLIPQVGEEPDQQGFGGSG  95

Query  93   IAFPVRAEQVPTQLIDELAQRLPDQPDGPLSFTLLMPSLGSVRVNANKTENRWSVQLGFA  152
            +AF+ ++E+VPTQLIDELAQRLPDQPDGPL+F+LLMP+LGSVRVNA+K+ENRW++QLGF+
Sbjct  96   VAFSAQSENVPTQLIDELAQRLPDQPDGPLAFSLLMPNLGSVRVNASKSENRWNIQLGFG  155

Query  153  RRDVLKRLSAHTGACRDSLSQALGQDVELDMHEDLSA  189
            RRDVLKRL ++ GACR+SL+QALGQDVELDMHED++A
Sbjct  156  RRDVLKRLQGQVGACRESLAQALGQDVELDMHEDFTA  192