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PAthogenisity Island DataBase (PAI DB)

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Homologs of HMPREF0351_12131 gene of NC_017960_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) EFAU004_02135
( YP_005355337.1 )

phage terminase small subunit

NC_017022
(Enterococcus faecium Aus0004)

9e-70

100

2) HMPREF0351_12131
( YP_006376737.1 )

bacteriophage terminase small subunit

NC_017960
(Enterococcus faecium DO)

9e-70

100

3) Lp16_1957
( YP_008121773.1 )

prophage P2b protein 14, terminase small subunit

NC_021514
(Lactobacillus plantarum 16)

1e-26

4) JDM1_0042
( YP_003061628.1 )

prophage Lp3 protein 14, terminase small subunit

NC_012984
(Lactobacillus plantarum JDM1)

3e-26

5) LBP_cg1999
( YP_007987676.1 )

Prophage Lp3 protein 14, terminase small subunit

NC_021224
(Lactobacillus plantarum P-8)

9e-26

6) lp_2467
( YP_004890155.1 )

prophage P2b protein 14, terminase small subunit

NC_004567
(Lactobacillus plantarum WCFS1)

2e-25

• Sequence Alignments

1) EFAU004_02135 in NC_017022


> NC_017960_P1|7|G7|389869314|YP_006376737.1|Enterococcus_faecium_DO|-|5200..5673|-|HMPREF0351_12131|bacteriophage 
terminase 
small subunit
Length=157

 Score =  256 bits (956),  Expect = 9e-70, Method: Compositional matrix adjust.
 Identities = 157/157 (100%), Positives = 157/157 (100%), Gaps = 0/157 (0%)

Query  1    MGHPKILHDTKGNISSEEKAIRVDAREELFKQQPLINITPPDWMAASARSEWNRIVPTLK  60
            MGHPKILHDTKGNISSEEKAIRVDAREELFKQQPLINITPPDWMAASARSEWNRIVPTLK
Sbjct  1    MGHPKILHDTKGNISSEEKAIRVDAREELFKQQPLINITPPDWMAASARSEWNRIVPTLK  60

Query  61   KDYPLSEADYGSLVAYCLAFARMKTAEAEIRKSGTFITCENGVKKANPAVRVQSQAMSDL  120
            KDYPLSEADYGSLVAYCLAFARMKTAEAEIRKSGTFITCENGVKKANPAVRVQSQAMSDL
Sbjct  61   KDYPLSEADYGSLVAYCLAFARMKTAEAEIRKSGTFITCENGVKKANPAVRVQSQAMSDL  120

Query  121  KKQATSLGMTLESRSKLALNKVKNDEPEDPFKELMNS  157
            KKQATSLGMTLESRSKLALNKVKNDEPEDPFKELMNS
Sbjct  121  KKQATSLGMTLESRSKLALNKVKNDEPEDPFKELMNS  157

2) HMPREF0351_12131 in NC_017960


> NC_017960_P1|7|G7|389869314|YP_006376737.1|Enterococcus_faecium_DO|-|5200..5673|-|HMPREF0351_12131|bacteriophage 
terminase 
small subunit
Length=157

 Score =  256 bits (956),  Expect = 9e-70, Method: Compositional matrix adjust.
 Identities = 157/157 (100%), Positives = 157/157 (100%), Gaps = 0/157 (0%)

Query  1    MGHPKILHDTKGNISSEEKAIRVDAREELFKQQPLINITPPDWMAASARSEWNRIVPTLK  60
            MGHPKILHDTKGNISSEEKAIRVDAREELFKQQPLINITPPDWMAASARSEWNRIVPTLK
Sbjct  1    MGHPKILHDTKGNISSEEKAIRVDAREELFKQQPLINITPPDWMAASARSEWNRIVPTLK  60

Query  61   KDYPLSEADYGSLVAYCLAFARMKTAEAEIRKSGTFITCENGVKKANPAVRVQSQAMSDL  120
            KDYPLSEADYGSLVAYCLAFARMKTAEAEIRKSGTFITCENGVKKANPAVRVQSQAMSDL
Sbjct  61   KDYPLSEADYGSLVAYCLAFARMKTAEAEIRKSGTFITCENGVKKANPAVRVQSQAMSDL  120

Query  121  KKQATSLGMTLESRSKLALNKVKNDEPEDPFKELMNS  157
            KKQATSLGMTLESRSKLALNKVKNDEPEDPFKELMNS
Sbjct  121  KKQATSLGMTLESRSKLALNKVKNDEPEDPFKELMNS  157

3) Lp16_1957 in NC_021514


> NC_017960_P1|7|G7|389869314|YP_006376737.1|Enterococcus_faecium_DO|-|5200..5673|-|HMPREF0351_12131|bacteriophage 
terminase 
small subunit
Length=157

 Score =  113 bits (410),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 68/153 (45%), Positives = 104/153 (68%), Gaps = 2/153 (1%)

Query  6    KALASMKKHLTNDERDQRKDAEKALF-DYPVLDLTPPDWLHDRALTEWQRVAPYLKANTP  64
            K L   K +++++E+  R DA   LF + P++++TPPDW+   A +EW+R+ P LK + P
Sbjct  5    KILHDTKGNISSEEKAIRVDAREELFKQQPLINITPPDWMAASARSEWNRIVPTLKKDYP  64

Query  65   ISELDRAMLASYCRAYATVQTCENDIRKNGLVQTNQETGVRKPNPYVALQSQAMKDLKAL  124
            +SE D + L +YC A+A ++T E +IRK+G   T  E GV+K+NP V +QSQAM DLK  
Sbjct  65   LSEADYGSLVAYCLAFARMKTAEAEIRKSGTFITC-ENGVKKANPAVRVQSQAMSDLKKQ  123

Query  125  ANDLGMSLSSRARMELNKQKDETPEDTFEAMLS  157
            A  LGM+L SR+++ LNK K++ PED F  +++
Sbjct  124  ATSLGMTLESRSKLALNKVKNDEPEDPFKELMN  156

4) JDM1_0042 in NC_012984


> NC_017960_P1|7|G7|389869314|YP_006376737.1|Enterococcus_faecium_DO|-|5200..5673|-|HMPREF0351_12131|bacteriophage 
terminase 
small subunit
Length=157

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 67/153 (44%), Positives = 104/153 (68%), Gaps = 2/153 (1%)

Query  6    KALASMKKHLTNDERDQRKDAEKALF-DYPSLDLTPPDWLHDRALTEWQRVAPYLKANTP  64
            K L   K +++++E+  R DA   LF + P +++TPPDW+   A +EW+R+ P LK + P
Sbjct  5    KILHDTKGNISSEEKAIRVDAREELFKQQPLINITPPDWMAASARSEWNRIVPTLKKDYP  64

Query  65   ISELDRAMLASYCRAYATVQTCENDIRKNGLVQTNQDTGVRKPNPYVALQSQAMKDLKAL  124
            +SE D + L +YC A+A ++T E +IRK+G   T ++ GV+K+NP V +QSQAM DLK  
Sbjct  65   LSEADYGSLVAYCLAFARMKTAEAEIRKSGTFITCEN-GVKKANPAVRVQSQAMSDLKKQ  123

Query  125  ANDLGMSLSSRARMELNKQKDETPEDTFEAMLS  157
            A  LGM+L SR+++ LNK K++ PED F  +++
Sbjct  124  ATSLGMTLESRSKLALNKVKNDEPEDPFKELMN  156

5) LBP_cg1999 in NC_021224


> NC_017960_P1|7|G7|389869314|YP_006376737.1|Enterococcus_faecium_DO|-|5200..5673|-|HMPREF0351_12131|bacteriophage 
terminase 
small subunit
Length=157

 Score =  110 bits (399),  Expect = 9e-26, Method: Compositional matrix adjust.
 Identities = 67/153 (44%), Positives = 104/153 (68%), Gaps = 2/153 (1%)

Query  6    KPLASMKKHLTNDERDQRKDAEKALF-DYPSLDLTPPDWLHDRALTEWQRVAPYLKANTP  64
            K L   K +++++E+  R DA   LF + P +++TPPDW+   A +EW+R+ P LK + P
Sbjct  5    KILHDTKGNISSEEKAIRVDAREELFKQQPLINITPPDWMAASARSEWNRIVPTLKKDYP  64

Query  65   ISELDRAMLASYCRAYATVQTCENDIRKNGLVQTNQKSGVRKPNPYVALQSQAMKDLKAL  124
            +SE D + L +YC A+A ++T E +IRK+G   T + +GV+K+NP V +QSQAM DLK  
Sbjct  65   LSEADYGSLVAYCLAFARMKTAEAEIRKSGTFITCE-NGVKKANPAVRVQSQAMSDLKKQ  123

Query  125  ANDLGMSLSSRARMELNKQKDETPEDTFEAMLS  157
            A  LGM+L SR+++ LNK K++ PED F  +++
Sbjct  124  ATSLGMTLESRSKLALNKVKNDEPEDPFKELMN  156

6) lp_2467 in NC_004567


> NC_017960_P1|7|G7|389869314|YP_006376737.1|Enterococcus_faecium_DO|-|5200..5673|-|HMPREF0351_12131|bacteriophage 
terminase 
small subunit
Length=157

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 66/153 (44%), Positives = 104/153 (68%), Gaps = 2/153 (1%)

Query  6    KPLASMKKHLTNDERDQRKDAEKALF-DYPSLDLTPPDWLHDRALTEWQRVAPYLKANTP  64
            K L   K +++++E+  R DA   LF + P +++TPPDW+   A +EW+R+ P LK + P
Sbjct  5    KILHDTKGNISSEEKAIRVDAREELFKQQPLINITPPDWMAASARSEWNRIVPTLKKDYP  64

Query  65   ISELDRAMLASYCRAYATVQTCENDIRKNGLVQTNQKSGVRKPNPYVALQSQAMKDVKAL  124
            +SE D + L +YC A+A ++T E +IRK+G   T + +GV+K+NP V +QSQAM D+K  
Sbjct  65   LSEADYGSLVAYCLAFARMKTAEAEIRKSGTFITCE-NGVKKANPAVRVQSQAMSDLKKQ  123

Query  125  ANDLGMSLSSRARMELNKQKDETPEDTFEAMLS  157
            A  LGM+L SR+++ LNK K++ PED F  +++
Sbjct  124  ATSLGMTLESRSKLALNKVKNDEPEDPFKELMN  156