Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of hrpU2 gene of U07346

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) Psyr_1210
( YP_234302.1 )

type III secretion protein HrcQa

NC_007005
(Pseudomonas syringae B728a)

2e-83

2) hrcQa
( NP_791224.1 )

type III secretion protein HrcQa

NC_004578
(Pseudomonas syringae DC3000)

7e-70

3) hrcQa
( YP_273546.1 )

type III secretion component protein HrcQa

NC_005773
(Pseudomonas syringae 1448A)

3e-68

4) Pmen_0044
( YP_001185550.1 )

hypothetical protein

NC_009439
(Pseudomonas mendocina ymp)

2e-48

• Sequence Alignments

1) Psyr_1210 in NC_007005


> U07346|7|G6|507393|AAA81945.1|Pseudomonas_syringae_pv._syringae_Pss61|+|3573..4289|hrpU2|-|HrpU2
Length=238

 Score =  301 bits (1126),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 202/221 (92%), Positives = 217/221 (99%), Gaps = 0/221 (0%)

Query  1    MSALRLRKVDALLAQATRALGAGRRLGFSTRGQHAELSLLPQLEDARIPADGVWLNTAVG  60
            MSALRLRKVDALLAQATRALGAGRRLGFS+RGQHAELSLLP LEDARIPADGVWLNTAVG
Sbjct  1    MSALRLRKVDALLAQATRALGAGRRLGFSSRGQHAELSLLPLLEDARIPADGVWLNTAVG  60

Query  61   PlllsdaeallsllGEIPFSLGGEHQAWYWQLFNQRLSPVIADLLAPVAPFSDAPTEPAI  120
            PLLLSDAEALLSLLGE+PF+LGGEHQ+WYWQLFNQRLSPV+ADLLAPVAPFSD+PTE AI
Sbjct  61   PLLLSDAEALLSLLGEVPFTLGGEHQGWYWQLFNQRLSPVVADLLAPVAPFSDTPTELAI  120

Query  121  GCRVHVRLGSERLDAHLHAAPATLLRLLGSADWQVLKRDVDQSWSVATPLIVGELSLTLE  180
            GCRVHVRLGSERLD++LHAAPATLLRLLGSADWQVL+R++D+SWSV+TPLIVGELSLT E
Sbjct  121  GCRVHVRLGSERLDTRLHAAPATLLRLLGSADWQVLNRNLDESWSVSTPLIVGELSLTRE  180

Query  181  QIAALRPGDVVLPARCRFDSAGQGTVTLAGRQWAACTDQQA  221
            QIA+LRPGDVVLPARCRFDSAGQG+VTLAGRQWAA TDQQA
Sbjct  181  QIASLRPGDVVLPARCRFDSAGQGSVTLAGRQWAARTDQQA  221

2) hrcQa in NC_004578


> U07346|7|G6|507393|AAA81945.1|Pseudomonas_syringae_pv._syringae_Pss61|+|3573..4289|hrpU2|-|HrpU2
Length=238

 Score =  256 bits (955),  Expect = 7e-70, Method: Compositional matrix adjust.
 Identities = 150/222 (68%), Positives = 193/222 (87%), Gaps = 0/222 (0%)

Query  1    MSALCLRKVDPLLAKVSRELGAGQCLSFSAKGQQAELTLLPLIASDETPAKGVWLNTAVG  60
            MSAL LRKVD+LLA+ +R LGAG+ L+FS++GQ+AEL+LLPL+     PA GVWLNTAVG
Sbjct  1    MSALRLRKVDALLAQATRALGAGRRLGFSSRGQHAELSLLPLLEDARIPADGVWLNTAVG  60

Query  61   ALCLSDAEALLSLLGDIPLTLGGEQQAWYWQFFNQRLSPTIADLLAPVEPLPQACAELTV  120
            +L LSDAEALLSLLG++P+TLGGE+Q+WYWQ+FNQRLSP +ADLLAPV P++++ +EL++
Sbjct  61   PLLLSDAEALLSLLGEVPFTLGGEHQGWYWQLFNQRLSPVVADLLAPVAPFSDTPTELAI  120

Query  121  GCRIQVRLADQQVHAHLHATPETLLTLLRSAAWQARLKPLDERWSISTPLILGELSLTLE  180
            GCR++VRL+ ++++++LHA+P TLL LL SA WQ   + LDE WS+STPLI+GELSLT E
Sbjct  121  GCRVHVRLGSERLDTRLHAAPATLLRLLGSADWQVLNRNLDESWSVSTPLIVGELSLTRE  180

Query  181  QLASLRPGDVLLPANCKFDSAGQGFLTLAGRQWAAQTDSQDQ  222
            Q+ASLRPGDV+LPA C+FDSAGQG +TLAGRQWAA+TD Q Q
Sbjct  181  QIASLRPGDVVLPARCRFDSAGQGSVTLAGRQWAARTDQQAQ  222

3) hrcQa in NC_005773


> U07346|7|G6|507393|AAA81945.1|Pseudomonas_syringae_pv._syringae_Pss61|+|3573..4289|hrpU2|-|HrpU2
Length=238

 Score =  250 bits (935),  Expect = 3e-68, Method: Compositional matrix adjust.
 Identities = 162/222 (73%), Positives = 199/222 (90%), Gaps = 0/222 (0%)

Query  1    MSALRLRKVDALLAQATRELGAGQSLGFSAAGQDAELTLLPLLADAGEPAGAVWLSTAIG  60
            MSALRLRKVDALLAQATR LGAG+ LGFS+ GQ+AEL+LLPLL DA  PA++VWL+TA+G
Sbjct  1    MSALRLRKVDALLAQATRALGAGRRLGFSSRGQHAELSLLPLLEDARIPADGVWLNTAVG  60

Query  61   PlllsdaeallsllGDIPLTLGGEQQAWYWQLFNQRLSPTVARLLAPVEPLHNKPQAPTL  120
            PLLLSDAEALLSLLG++P+TLGGE+Q+WYWQLFNQRLSP VA LLAPV P+ + P   ++
Sbjct  61   PLLLSDAEALLSLLGEVPFTLGGEHQGWYWQLFNQRLSPVVADLLAPVAPFSDTPTELAI  120

Query  121  GCRVQIRRGGEQLHAHMHATPDTLLRLLRSASWQARTRTVDESWSVASPLIIGEMSLTRE  180
            GCRV++R G+E+L++++HA+P TLLRLL SA WQ   R +DESWSV++PLI+GE+SLTRE
Sbjct  121  GCRVHVRLGSERLDTRLHAAPATLLRLLGSADWQVLNRNLDESWSVSTPLIVGELSLTRE  180

Query  181  QIASLRPGDVVLPAHCQFDSAGQGFLSLAGRQWAAQTDQHAQ  222
            QIASLRPGDVVLPA+C+FDSAGQG ++LAGRQWAA+TDQ+AQ
Sbjct  181  QIASLRPGDVVLPARCRFDSAGQGSVTLAGRQWAARTDQQAQ  222

4) Pmen_0044 in NC_009439


> U07346|7|G6|507393|AAA81945.1|Pseudomonas_syringae_pv._syringae_Pss61|+|3573..4289|hrpU2|-|HrpU2
Length=238

 Score =  184 bits (683),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 115/239 (49%), Positives = 175/239 (74%), Gaps = 2/239 (0%)

Query  1    MTPLALGAISSVLAQASRALGAGVTLNFRARGHDGELKLLPMLPNAPSRA-GTWLHTNVG  59
            M++L L  + ++LAQA+RALGAG  L F +RG+++EL LLP+L +A   A G WL+T VG
Sbjct  1    MSALRLRKVDALLAQATRALGAGRRLGFSSRGQHAELSLLPLLEDARIPADGVWLNTAVG  60

Query  60   PLCLGDAGAVLSLLGELPVTCEGDDQPWYWQLISQRLSQGVAGALGAISPLDGDAPAGAL  119
            PL L+DA A+LSLLGE+P T  G++Q WYWQL++QRLS  VA+ L++++P+ +D+P+   
Sbjct  61   PLLLSDAEALLSLLGEVPFTLGGEHQGWYWQLFNQRLSPVVADLLAPVAPF-SDTPTELA  119

Query  120  LHAQLHVRLGDERVQAQLAAPPETWLNWLQAPEWQRIRTALHEALVLHIPLQLGQLELSA  179
            +  ++HVRLG ER++++L A+P T L  L +++WQ +   L+E+  +  PL +G+L L+ 
Sbjct  120  IGCRVHVRLGSERLDTRLHAAPATLLRLLGSADWQVLNRNLDESWSVSTPLIVGELSLTR  179

Query  180  EQLASLQPGDIVLPAQASFTCDGSGHLALASRYWAAQVSSRGEKLFLNLRHEESSQHEH  238
            EQ+ASL+PGD+VLPA+  F   G G ++LA+R WAA+   +++ LFL+L HEE S+HE 
Sbjct  180  EQIASLRPGDVVLPARCRFDSAGQGSVTLAGRQWAARTDQQAQHLFLQLSHEEHSHHEY  238