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Homologs of sepD gene of AJ303141

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) sepD
( YP_003232147.1 )

secretion switching protein SepD

NC_013361
(Escherichia coli 11368)

2e-67

100

2) sepD
( YP_003223481.1 )

secretion switching protein SepD

NC_013353
(Escherichia coli 12009)

2e-67

100

3) sepD
( YP_003236094.1 )

secretion switching protein SepD

NC_013364
(Escherichia coli 11128)

5e-63

4) sepD
( YP_002331416.1 )

secretion switching protein SepD

NC_011601
(Escherichia coli E2348/69)

6e-63

5) sepD
( YP_003501880.1 )

hypothetical protein

NC_013941
(Escherichia coli CB9615)

3e-62

6) Z5125
( NP_290274.1 )

hypothetical protein

NC_002655
(Escherichia coli EDL933)

3e-62

7) ECs4574
( NP_312601.1 )

SepD

NC_002695
(Escherichia coli Sakai)

3e-62

8) sepD
( YP_003080486.1 )

LEE-encoded type III secretion system component

NC_013008
(Escherichia coli TW14359)

3e-62

9) CDCO157_4309
( YP_006315174.1 )

protein SepD

NC_017906
(Escherichia coli Xuzhou21)

3e-62

10) sepD
( YP_003366508.1 )

T3SS secretion switching protein SepD

NC_013716
(Citrobacter rodentium ICC168)

5e-61

• Sequence Alignments

1) sepD in NC_013353


> AJ303141|80|G77|57434463|CAI43880.1|Escherichia_coli_RW1374|+|89001..89456|sepD|-|SepD 
protein
Length=151

 Score =  248 bits (925),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 151/151 (100%), Positives = 151/151 (100%), Gaps = 0/151 (0%)

Query  1    MNNNNGIVKNDSDWLTALDFVKDVKGSPKHLTFHIYQKNAFLHDFGSYWVLYIELNGDFR  60
            MNNNNGIVKNDSDWLTALDFVKDVKGSPKHLTFHIYQKNAFLHDFGSYWVLYIELNGDFR
Sbjct  1    MNNNNGIVKNDSDWLTALDFVKDVKGSPKHLTFHIYQKNAFLHDFGSYWVLYIELNGDFR  60

Query  61   QVPTDTFIRLCNILAVSKEYKQMGIFQSNKKWYLCQLFNKDNNHRANMSKAIMQHTLASL  120
            QVPTDTFIRLCNILAVSKEYKQMGIFQSNKKWYLCQLFNKDNNHRANMSKAIMQHTLASL
Sbjct  61   QVPTDTFIRLCNILAVSKEYKQMGIFQSNKKWYLCQLFNKDNNHRANMSKAIMQHTLASL  120

Query  121  LDKQFDKLEQASTSDTTMPPTHLFSDIGRIV  151
            LDKQFDKLEQASTSDTTMPPTHLFSDIGRIV
Sbjct  121  LDKQFDKLEQASTSDTTMPPTHLFSDIGRIV  151

2) sepD in NC_013361


> AJ303141|80|G77|57434463|CAI43880.1|Escherichia_coli_RW1374|+|89001..89456|sepD|-|SepD 
protein
Length=151

 Score =  248 bits (925),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 151/151 (100%), Positives = 151/151 (100%), Gaps = 0/151 (0%)

Query  1    MNNNNGIVKNDSDWLTALDFVKDVKGSPKHLTFHIYQKNAFLHDFGSYWVLYIELNGDFR  60
            MNNNNGIVKNDSDWLTALDFVKDVKGSPKHLTFHIYQKNAFLHDFGSYWVLYIELNGDFR
Sbjct  1    MNNNNGIVKNDSDWLTALDFVKDVKGSPKHLTFHIYQKNAFLHDFGSYWVLYIELNGDFR  60

Query  61   QVPTDTFIRLCNILAVSKEYKQMGIFQSNKKWYLCQLFNKDNNHRANMSKAIMQHTLASL  120
            QVPTDTFIRLCNILAVSKEYKQMGIFQSNKKWYLCQLFNKDNNHRANMSKAIMQHTLASL
Sbjct  61   QVPTDTFIRLCNILAVSKEYKQMGIFQSNKKWYLCQLFNKDNNHRANMSKAIMQHTLASL  120

Query  121  LDKQFDKLEQASTSDTTMPPTHLFSDIGRIV  151
            LDKQFDKLEQASTSDTTMPPTHLFSDIGRIV
Sbjct  121  LDKQFDKLEQASTSDTTMPPTHLFSDIGRIV  151

3) sepD in NC_013364


> AJ303141|80|G77|57434463|CAI43880.1|Escherichia_coli_RW1374|+|89001..89456|sepD|-|SepD 
protein
Length=151

 Score =  233 bits (869),  Expect = 5e-63, Method: Compositional matrix adjust.
 Identities = 138/151 (92%), Positives = 145/151 (97%), Gaps = 0/151 (0%)

Query  1    MNNNNGIAKNDCDWLTALDFVKDVNGSPTHLTFYIYQKNAFLHDFGNYWVLYIELSGDFR  60
            MNNNNGI KND DWLTALDFVKDV+GSP HLTF IYQKNAFLHDFG+YWVLYIEL+GDFR
Sbjct  1    MNNNNGIVKNDSDWLTALDFVKDVKGSPKHLTFHIYQKNAFLHDFGSYWVLYIELNGDFR  60

Query  61   QVPTDTFIRLCNILAVSKEYKQMGIFLSNKKWYLCQIFHKDNNHRANMSKAIMQHTLASL  120
            QVPTDTFIRLCNILAVSKEYKQMGIF SNKKWYLCQ+F+KDNNHRANMSKAIMQHTLASL
Sbjct  61   QVPTDTFIRLCNILAVSKEYKQMGIFQSNKKWYLCQLFNKDNNHRANMSKAIMQHTLASL  120

Query  121  LDKQFDKLEQSSSSDTMMPPTHLFSDIGRIV  151
            LDKQFDKLEQ+S+SDT MPPTHLFSDIGRIV
Sbjct  121  LDKQFDKLEQASTSDTTMPPTHLFSDIGRIV  151

4) sepD in NC_011601


> AJ303141|80|G77|57434463|CAI43880.1|Escherichia_coli_RW1374|+|89001..89456|sepD|-|SepD 
protein
Length=151

 Score =  233 bits (867),  Expect = 6e-63, Method: Compositional matrix adjust.
 Identities = 137/151 (91%), Positives = 145/151 (97%), Gaps = 0/151 (0%)

Query  1    MNNNNGIAKNDCDWLTALDFVKDVNGSPTHLTFYIYQKNAFLHDFGNYWVLYIELSGDFR  60
            MNNNNGI KND DWLTALDFVKDV+GSP HLTF IYQKNAFLHDFG+YWVLYIEL+GDFR
Sbjct  1    MNNNNGIVKNDSDWLTALDFVKDVKGSPKHLTFHIYQKNAFLHDFGSYWVLYIELNGDFR  60

Query  61   QIPTDTFIRLCNILAVSKEYKQMGIFLSNKKWYLCQIFHKDNNHRANMSKAIMQHTLASL  120
            Q+PTDTFIRLCNILAVSKEYKQMGIF SNKKWYLCQ+F+KDNNHRANMSKAIMQHTLASL
Sbjct  61   QVPTDTFIRLCNILAVSKEYKQMGIFQSNKKWYLCQLFNKDNNHRANMSKAIMQHTLASL  120

Query  121  LDKQFDKLEQSSSSDTMMPPTHLFSDIGRIV  151
            LDKQFDKLEQ+S+SDT MPPTHLFSDIGRIV
Sbjct  121  LDKQFDKLEQASTSDTTMPPTHLFSDIGRIV  151

5) Z5125 in NC_002655


> AJ303141|80|G77|57434463|CAI43880.1|Escherichia_coli_RW1374|+|89001..89456|sepD|-|SepD 
protein
Length=151

 Score =  230 bits (859),  Expect = 3e-62, Method: Compositional matrix adjust.
 Identities = 137/151 (91%), Positives = 144/151 (96%), Gaps = 0/151 (0%)

Query  1    MNNNNGIAKNDCDWLTALDFVKDVNGSPTHLTFYIYQKNAFLHDFGNYWVLYIELSGDFR  60
            MNNNNGI KND DWLTALDFVKDV+GSP HLTF IYQKNAFLHDFG+YWVLYIEL+GDFR
Sbjct  1    MNNNNGIVKNDSDWLTALDFVKDVKGSPKHLTFHIYQKNAFLHDFGSYWVLYIELNGDFR  60

Query  61   QVPTDTFIRLCNILAVSNEYKQMGIFLSNKKWYLCQIFHKDNNHRANMSKAIMQHTLASL  120
            QVPTDTFIRLCNILAVS+EYKQMGIF SNKKWYLCQ+F+KDNNHRANMSKAIMQHTLASL
Sbjct  61   QVPTDTFIRLCNILAVSKEYKQMGIFQSNKKWYLCQLFNKDNNHRANMSKAIMQHTLASL  120

Query  121  LDKQFDKLEQLSSSDTMMPPTHLFSDIGRIV  151
            LDKQFDKLEQ S+SDT MPPTHLFSDIGRIV
Sbjct  121  LDKQFDKLEQASTSDTTMPPTHLFSDIGRIV  151

6) ECs4574 in NC_002695


> AJ303141|80|G77|57434463|CAI43880.1|Escherichia_coli_RW1374|+|89001..89456|sepD|-|SepD 
protein
Length=151

 Score =  230 bits (859),  Expect = 3e-62, Method: Compositional matrix adjust.
 Identities = 137/151 (91%), Positives = 144/151 (96%), Gaps = 0/151 (0%)

Query  1    MNNNNGIAKNDCDWLTALDFVKDVNGSPTHLTFYIYQKNAFLHDFGNYWVLYIELSGDFR  60
            MNNNNGI KND DWLTALDFVKDV+GSP HLTF IYQKNAFLHDFG+YWVLYIEL+GDFR
Sbjct  1    MNNNNGIVKNDSDWLTALDFVKDVKGSPKHLTFHIYQKNAFLHDFGSYWVLYIELNGDFR  60

Query  61   QVPTDTFIRLCNILAVSNEYKQMGIFLSNKKWYLCQIFHKDNNHRANMSKAIMQHTLASL  120
            QVPTDTFIRLCNILAVS+EYKQMGIF SNKKWYLCQ+F+KDNNHRANMSKAIMQHTLASL
Sbjct  61   QVPTDTFIRLCNILAVSKEYKQMGIFQSNKKWYLCQLFNKDNNHRANMSKAIMQHTLASL  120

Query  121  LDKQFDKLEQLSSSDTMMPPTHLFSDIGRIV  151
            LDKQFDKLEQ S+SDT MPPTHLFSDIGRIV
Sbjct  121  LDKQFDKLEQASTSDTTMPPTHLFSDIGRIV  151

7) sepD in NC_013008


> AJ303141|80|G77|57434463|CAI43880.1|Escherichia_coli_RW1374|+|89001..89456|sepD|-|SepD 
protein
Length=151

 Score =  230 bits (859),  Expect = 3e-62, Method: Compositional matrix adjust.
 Identities = 137/151 (91%), Positives = 144/151 (96%), Gaps = 0/151 (0%)

Query  1    MNNNNGIAKNDCDWLTALDFVKDVNGSPTHLTFYIYQKNAFLHDFGNYWVLYIELSGDFR  60
            MNNNNGI KND DWLTALDFVKDV+GSP HLTF IYQKNAFLHDFG+YWVLYIEL+GDFR
Sbjct  1    MNNNNGIVKNDSDWLTALDFVKDVKGSPKHLTFHIYQKNAFLHDFGSYWVLYIELNGDFR  60

Query  61   QVPTDTFIRLCNILAVSNEYKQMGIFLSNKKWYLCQIFHKDNNHRANMSKAIMQHTLASL  120
            QVPTDTFIRLCNILAVS+EYKQMGIF SNKKWYLCQ+F+KDNNHRANMSKAIMQHTLASL
Sbjct  61   QVPTDTFIRLCNILAVSKEYKQMGIFQSNKKWYLCQLFNKDNNHRANMSKAIMQHTLASL  120

Query  121  LDKQFDKLEQLSSSDTMMPPTHLFSDIGRIV  151
            LDKQFDKLEQ S+SDT MPPTHLFSDIGRIV
Sbjct  121  LDKQFDKLEQASTSDTTMPPTHLFSDIGRIV  151

8) sepD in NC_013941


> AJ303141|80|G77|57434463|CAI43880.1|Escherichia_coli_RW1374|+|89001..89456|sepD|-|SepD 
protein
Length=151

 Score =  230 bits (859),  Expect = 3e-62, Method: Compositional matrix adjust.
 Identities = 137/151 (91%), Positives = 144/151 (96%), Gaps = 0/151 (0%)

Query  1    MNNNNGIAKNDCDWLTALDFVKDVNGSPTHLTFYIYQKNAFLHDFGNYWVLYIELSGDFR  60
            MNNNNGI KND DWLTALDFVKDV+GSP HLTF IYQKNAFLHDFG+YWVLYIEL+GDFR
Sbjct  1    MNNNNGIVKNDSDWLTALDFVKDVKGSPKHLTFHIYQKNAFLHDFGSYWVLYIELNGDFR  60

Query  61   QVPTDTFIRLCNILAVSNEYKQMGIFLSNKKWYLCQIFHKDNNHRANMSKAIMQHTLASL  120
            QVPTDTFIRLCNILAVS+EYKQMGIF SNKKWYLCQ+F+KDNNHRANMSKAIMQHTLASL
Sbjct  61   QVPTDTFIRLCNILAVSKEYKQMGIFQSNKKWYLCQLFNKDNNHRANMSKAIMQHTLASL  120

Query  121  LDKQFDKLEQLSSSDTMMPPTHLFSDIGRIV  151
            LDKQFDKLEQ S+SDT MPPTHLFSDIGRIV
Sbjct  121  LDKQFDKLEQASTSDTTMPPTHLFSDIGRIV  151

9) CDCO157_4309 in NC_017906


> AJ303141|80|G77|57434463|CAI43880.1|Escherichia_coli_RW1374|+|89001..89456|sepD|-|SepD 
protein
Length=151

 Score =  230 bits (859),  Expect = 3e-62, Method: Compositional matrix adjust.
 Identities = 137/151 (91%), Positives = 144/151 (96%), Gaps = 0/151 (0%)

Query  1    MNNNNGIAKNDCDWLTALDFVKDVNGSPTHLTFYIYQKNAFLHDFGNYWVLYIELSGDFR  60
            MNNNNGI KND DWLTALDFVKDV+GSP HLTF IYQKNAFLHDFG+YWVLYIEL+GDFR
Sbjct  1    MNNNNGIVKNDSDWLTALDFVKDVKGSPKHLTFHIYQKNAFLHDFGSYWVLYIELNGDFR  60

Query  61   QVPTDTFIRLCNILAVSNEYKQMGIFLSNKKWYLCQIFHKDNNHRANMSKAIMQHTLASL  120
            QVPTDTFIRLCNILAVS+EYKQMGIF SNKKWYLCQ+F+KDNNHRANMSKAIMQHTLASL
Sbjct  61   QVPTDTFIRLCNILAVSKEYKQMGIFQSNKKWYLCQLFNKDNNHRANMSKAIMQHTLASL  120

Query  121  LDKQFDKLEQLSSSDTMMPPTHLFSDIGRIV  151
            LDKQFDKLEQ S+SDT MPPTHLFSDIGRIV
Sbjct  121  LDKQFDKLEQASTSDTTMPPTHLFSDIGRIV  151

10) sepD in NC_013716


> AJ303141|80|G77|57434463|CAI43880.1|Escherichia_coli_RW1374|+|89001..89456|sepD|-|SepD 
protein
Length=151

 Score =  226 bits (843),  Expect = 5e-61, Method: Compositional matrix adjust.
 Identities = 130/151 (87%), Positives = 146/151 (97%), Gaps = 0/151 (0%)

Query  1    MNNNNGSAKNDSGWLTALDFVKDVKGSPTHLTFYIYQKNAFLHDFGNYWVLYIELSGDFR  60
            MNNNNG  KNDS+WLTALDFVKDVKGSP HLTF IYQKNAFLHDFG+YWVLYIEL+GDFR
Sbjct  1    MNNNNGIVKNDSDWLTALDFVKDVKGSPKHLTFHIYQKNAFLHDFGSYWVLYIELNGDFR  60

Query  61   QVPTDTFIKLCNILAVSKEYKQMGIFLSNNKWYICQIFNKGNNHRTNMSKTIMQHTLASL  120
            QVPTDTFI+LCNILAVSKEYKQMGIF SN+KWY+CQ+FNK+NNHR+NMSK+IMQHTLASL
Sbjct  61   QVPTDTFIRLCNILAVSKEYKQMGIFQSNKKWYLCQLFNKDNNHRANMSKAIMQHTLASL  120

Query  121  LDKHFNKLEQSSSSDTTLSPTHLFSDIGRIV  151
            LDK+F+KLEQ+S+SDTT++PTHLFSDIGRIV
Sbjct  121  LDKQFDKLEQASTSDTTMPPTHLFSDIGRIV  151