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Homologs of papCb gene of AF447814

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) W5S_1573
( YP_006282537.1 )

Outer membrane usher protein PapC

NC_017845
(Pectobacterium sp. SCC3193)

9e-119

2) MU9_3491
( YP_007506908.1 )

Fimbriae usher protein StfC

NC_020418
(Morganella morganii KT)

7e-115

3) fimD7
( NP_994689.1 )

hypothetical protein

NC_005810
(Yersinia pestis 91001)

1e-97

4) A1122_05615
( YP_005520809.1 )

hypothetical protein

NC_017168
(Yersinia pestis A1122)

1e-97

5) YPA_4134
( YP_654040.1 )

hypothetical protein

NC_008150
(Yersinia pestis Antiqua)

1e-97

6) YPD8_3564
( YP_005510625.1 )

hypothetical protein

NC_017160
(Yersinia pestis D182038)

1e-97

7) YPC_4557
( YP_005626228.1 )

hypothetical protein

NC_017265
(Yersinia pestis Harbin 35)

1e-97

8) y4062
( NP_671355.1 )

hypothetical protein

NC_004088
(Yersinia pestis KIM)

1e-97

9) YPN_3690
( YP_649617.1 )

hypothetical protein

NC_008149
(Yersinia pestis Nepal516)

1e-97

10) YPDSF_3785
( YP_001165103.1 )

hypothetical protein

NC_009381
(Yersinia pestis Pestoides F)

1e-97

11) YPD4_3557
( YP_005506764.1 )

hypothetical protein

NC_017154
(Yersinia pestis D106004)

1e-96

12) SDY_2537
( YP_404097.1 )

fimbrial usher

NC_007606
(Shigella dysenteriae Sd197)

2e-96

13) yfcU
( YP_006129677.1 )

export usher protein

NC_017638
(Escherichia coli DH1)

4e-96

14) yfcU
( YP_001731274.1 )

export usher protein

NC_010473
(Escherichia coli K-12)

5e-96

15) yfcU
( YP_007557522.1 )

predicted export usher protein

NC_020518
(Escherichia coli K-12)

5e-96

16) yfcU
( YP_490580.1 )

export usher protein

NC_007779
(Escherichia coli K-12)

5e-96

• Sequence Alignments

1) W5S_1573 in NC_017845


> AF447814|84|G83|18265942|AAL67415.1|Escherichia_coli_CFT073|-|66287..68050|papCb|-|truncated 
PapC
Length=587

 Score =  420 bits (1582),  Expect = 9e-119, Method: Compositional matrix adjust.
 Identities = 250/519 (49%), Positives = 386/519 (75%), Gaps = 11/519 (2%)

Query  32   AAEEIQFNTDVLDVNDRSNIDLSQFSRSGYIMPGIY--GMVVHVNKTDLPEQQVTFYIPE  89
            AA  ++FNTDVLD  D+ NID+++FS +GY++PG Y  +++V+ +    +  Q++F  P+
Sbjct  27   AASAVEFNTDVLDAADKKNIDFTRFSEAGYVLPGQYLLDVIVNGQSISPASLQISFVEPQ  86

Query  90   N-----DPRGSRACISKTLAGQLGFKLEIFKTLNWWHTGECLDESSVNGMTVRGDLSTSS  144
            +     + + ++AC++  +   +G+  E +  +  WH G+C D  ++ G+ +R D +++ 
Sbjct  87   SSGDKAEKKLPQACLTSDMVRLMGLTAESLDKVVYWHDGQCADFHGLPGVDIRPDTGAGV  146

Query  145  LYLSIPQAYLEYTSDDWDPPSRWDEGIPGLLFDYNTNFRTRKQHDGGSGYALSGNGTTGA  204
            L +++PQA LEY+   W PPSRWD+GIPGL++DYN N    ++ +GG +  +S NGT G+
Sbjct  147  LRINMPQAWLEYSDATWLPPSRWDDGIPGLMLDYNLNGTVSRNYQGGDSHQFSYNGTVGG  206

Query  205  NFGPWRLRADWQANIDHQTGSGLRTEQR-LDWSRYYAYRAIPNWHSKLTVGESYLDSGMF  263
            N+GPWRLRAD Q++ ++   +G +T +R + WSR+Y +RAIP W+++LT+GE+ ++S++F
Sbjct  207  NLGPWRLRADYQGSQEQSRYNGEKTTNRNFTWSRFYLFRAIPRWRANLTLGENNINSDIF  266

Query  264  DSFRFVGAGLESDDNMLPPNLRGYAPEVVGVARTNARVVVSQQGRVLYDTTVASGPFRIQ  323
             S  + GA+LESDD MLPP LRGYAP++ G+A TNARVVVSQQGRVLYD+ V++GPF IQ
Sbjct  267  RSWSYTGASLESDDRMLPPRLRGYAPQITGIAETNARVVVSQQGRVLYDSMVPAGPFSIQ  326

Query  324  DISDAVSGELDVRVEEQDGSVQVFTINTSSIPYLTRPGSVRFKVAAGKPSDFDHHLQGPL  383
            D+  +V G LDV V EQ+G  + F ++T+S+PYLTRPG VR+K+ +G++ +++H+ +GP+
Sbjct  327  DLDSSVRGRLDVEVIEQNGRKKTFQVDTASVPYLTRPGQVRYKLVSGRSRGYGHETEGPV  386

Query  384  FSTGEFSWGVSNGWSLYGGALIGGDYNALSIGGGRDLTVLGAISLDMTQSRARLPQEDRT  443
            F+TGE SWG+SN WSLYGGA+++GDYNAL+ G+G+DL V G++S D+TQS AR+ + +RT
Sbjct  387  FATGEASWGLSNQWSLYGGAVLAGDYNALAAGAGWDLGVPGTLSADITQSVARI-EGERT  445

Query  444  REGGSYRLSYSKNFDEYDSQVTFAGYRFSEKNFMSMGEYLDAR-RYGYHVGNGKEMYTIT  502
             +G S RLSYSK FD+ D+++TFAGYRFSE+N+M+M +YL+AR R +Y  +  KEMYT+T
Sbjct  446  FQGKSWRLSYSKRFDNADADITFAGYRFSERNYMTMEQYLNARYRNDYS-SREKEMYTVT  504

Query  503  FNKNFRDQGLSAYLNYSHETFWDSPVNDRYNLTLSHYFD  541
            +NKN  D   S  L+YS++T+WD    D Y +++++YF+
Sbjct  505  LNKNVADWNTSFNLQYSRQTYWDIRKTDYYTVSVNRYFN  543

2) MU9_3491 in NC_020418


> AF447814|84|G83|18265942|AAL67415.1|Escherichia_coli_CFT073|-|66287..68050|papCb|-|truncated 
PapC
Length=587

 Score =  407 bits (1531),  Expect = 7e-115, Method: Compositional matrix adjust.
 Identities = 251/487 (52%), Positives = 363/487 (75%), Gaps = 18/487 (3%)

Query  19   LKPLTFMILLSLFSAAAQAEKITEFNTEVLDLNERGQIDLSQFSQAGYVMPGIYSLALKV  78
            ++ +T +ILLSLF  AA A    EFNT+VLD  ++ +ID+++FS+AGYV+PG Y L + V
Sbjct  12   VNNITCVILLSLFCNAASA---VEFNTDVLDAADKKNIDFTRFSEAGYVLPGQYLLDVIV  68

Query  79   NNSMLAER--QIRFLAPDNDPQGS-----MACITPDMSEELGLTSSAKGDLTWWHNGECA  131
            N   ++    QI F+ P++  + +      AC+T+DM   +GLT+ + + +  WH+G+CA
Sbjct  69   NGQSISPASLQISFVEPQSSGDKAEKKLPQACLTSDMVRLMGLTAESLDKVVYWHDGQCA  128

Query  132  DPASLPGMTLRADFAAGALHVSLPQAYLEYTTDNWDPPSRWDEGIAGFILDYNLNTQLTK  191
            D  +LPG+ +R+D +AG L++++PQA LEY+   W PPSRWD+GI+G++LDYNLN  +++
Sbjct  129  DFHGLPGVDIRPDTGAGVLRINMPQAWLEYSDATWLPPSRWDDGIPGLMLDYNLNGTVSR  188

Query  192  QREAGHSDRQDISGNGTTGLNAGAWRLRADWQG-----RYSRTNHESDQRWDWNRFYAYR  246
            + ++G  D +++S NGT G N G+WRLRAD QG     RY+  +  +++   W+RFY +R
Sbjct  189  NYQGG--DSHQFSYNGTVGGNLGPWRLRADYQGSQEQSRYN-GEKTTNRNFTWSRFYLFR  245

Query  247  AIAPLRAKLTLGENYLTSGMFDSFRYTGVALDTDDMMLPPNLRGYAPEVSGVAKTNARVT  306
            AI+  RA+LTLGEN + S++F S  YTG +L++DD MLPP LRGYAP+++G+A TNARV 
Sbjct  246  AIPRWRANLTLGENNINSDIFRSWSYTGASLESDDRMLPPRLRGYAPQITGIAETNARVV  305

Query  307  VKQQGRVIYETTVAAGPFQIRDLSNALSGKLDVEVAEQDGSVQTFQVDAASVPYLTRPGL  366
            V QQGRV+Y++ V+AGPF I+DL +++ G+LDVEV EQ+G  +TFQVD+ASVPYLTRPG 
Sbjct  306  VSQQGRVLYDSMVPAGPFSIQDLDSSVRGRLDVEVIEQNGRKKTFQVDTASVPYLTRPGQ  365

Query  367  VRYKVALGKPSEYDHRVKGPEFISSEFSWGISNGWSVYGGGLFAGKYNAVSAGIGRDLLM  426
            VRYK+  G++  Y+H   GP F ++E SWG+SN WS+YGG+++AG YNA++AG G+DL +
Sbjct  366  VRYKLVSGRSRGYGHETEGPVFATGEASWGLSNQWSLYGGAVLAGDYNALAAGAGWDLGV  425

Query  427  LGALSADITQSRASLPDGETKKGGSYRLSYSKRFDATNSRVTFAGYRFSERDFMTMSQYL  486
             G+LSADITQS A + +  T +G S RLSYSKRFD +++ +TFAGYRFSER++MTM QYL
Sbjct  426  PGTLSADITQSVARIEGERTFQGKSWRLSYSKRFDNADADITFAGYRFSERNYMTMEQYL  485

Query  487  KARYHNS  493
            +ARY+N 
Sbjct  486  NARYRND  492

3) A1122_05615 in NC_017168


> AF447814|84|G83|18265942|AAL67415.1|Escherichia_coli_CFT073|-|66287..68050|papCb|-|truncated 
PapC
Length=587

 Score =  350 bits (1315),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 234/565 (42%), Positives = 375/565 (67%), Gaps = 22/565 (3%)

Query  4    NSKRKKTIFLMVKVLTIILVWLFLPESTAVVKFNTNIIDAKDRSNIDLSRFEVDDYTPPG  63
             + + +  F + ++  +IL+ LF  ++++ V FNT+++DA D+ NID++RF   +Y  PG
Sbjct  2    RGMKDRIPFAVNNITCVILLSLF-CNAASAVEFNTDVLDAADKKNIDFTRFSEAGYVLPG  60

Query  64   NYl-ldiliddrllPERYLVTYLAVD------EGKSTKLCLTPDLVNLFGLSTEVRESMT  116
            +YL   I+ ++ + P    ++++  +      E K  + CLT+D+V L GL++E  + + 
Sbjct  61   QYLLDVIVNGQSISPASLQISFVEPQSSGDKAEKKLPQACLTSDMVRLMGLTAESLDKVV  120

Query  117  LWNNDKCVAIDEKKEIKIQYDKEKQSLIISIPQAWLAYNDPNWVPPSQWGNGVAGTLLDY  176
             W++++C  ++    + I+ D     L I++PQAWL Y+D+ W+PPS+W++G++G +LDY
Sbjct  121  YWHDGQCADFHGLPGVDIRPDTGAGVLRINMPQAWLEYSDATWLPPSRWDDGIPGLMLDY  180

Query  177  NLFGYHYSPNMGGSTTNFSSYGTTGANMGPWRIRADYQYINTET--AGEH--YRNFDWSQ  232
            NL G       GG + +FS  GT G+N+GPWR+RADYQ  + ++   GE    RNF WS+
Sbjct  181  NLNGTVSRNYQGGDSHQFSYNGTVGGNLGPWRLRADYQGSQEQSRYNGEKTTNRNFTWSR  240

Query  233  VYAFRAIPSIGAKFVGGQTYLNSSIFDSFRFLGTSLSSDERMLPPTLRGYAPQVMGIAHT  292
             Y FRAIP   A++  G+  +NS IF S  + G+SL SD+RMLPP LRGYAPQ+ GIA+T
Sbjct  241  FYLFRAIPRWRANLTLGENNINSDIFRSWSYTGASLESDDRMLPPRLRGYAPQITGIAET  300

Query  293  NARVVLSQNGRVLYQTNVAPGPFVIQDISEAVQGNIDVRVEEEDGRVTVFQVNAASVPFL  352
            NARVV+SQ+GRVLY++ V++GPF IQD+  +V+G +DV V E++GR   FQV++ASVP+L
Sbjct  301  NARVVVSQQGRVLYDSMVPAGPFSIQDLDSSVRGRLDVEVIEQNGRKKTFQVDTASVPYL  360

Query  353  TRKGAVRYKAALGRPM-LGNSASNPTFFSGEFSWGAFNHVSLYGGLMTTSQDYTSAALGI  411
            TR G VRYK   GR+   G+ +  P F +GE SWG  N+ SLYGG + ++ DY + A G 
Sbjct  361  TRPGQVRYKLVSGRSRGYGHETEGPVFATGEASWGLSNQWSLYGGAVLAG-DYNALAAGA  419

Query  412  GQNLYDFGALSIDITHSRAQLPNEEQQNGESYRVNYSKRFEQTDSQISFAGYRFSKKNFM  471
            G +L   G+LS DIT+S A++  E   +G S R++YSKRF+++D++I+FAGYRFS +N+M
Sbjct  420  GWDLGVPGTLSADITQSVARIEGERTFQGKSWRLSYSKRFDNADADITFAGYRFSERNYM  479

Query  472  SMSQYLDWLNGNTALQY---DKQAYTVAANQYLA-WPDITMYLSVTRRTYWNAASSNNYS  527
            +M QY   LN+    +Y   +K+ YTV+ N+ +A W + +  L  +R+TYW+   ++ Y+
Sbjct  480  TMEQY---LNARYRNDYSSREKEMYTVTLNKNVADW-NTSFNLQYSRQTYWDIRKTDYYT  535

Query  528  LSMSKIFDIGTFKGISATISANKVN  552
            +S+++ F++  ++G+     ++ +N
Sbjct  536  VSVNRYFNVFGLQGVRLDCQPQGLN  560

4) YPA_4134 in NC_008150


> AF447814|84|G83|18265942|AAL67415.1|Escherichia_coli_CFT073|-|66287..68050|papCb|-|truncated 
PapC
Length=587

 Score =  350 bits (1315),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 234/565 (42%), Positives = 375/565 (67%), Gaps = 22/565 (3%)

Query  4    NSKRKKTIFLMVKVLTIILVWLFLPESTAVVKFNTNIIDAKDRSNIDLSRFEVDDYTPPG  63
             + + +  F + ++  +IL+ LF  ++++ V FNT+++DA D+ NID++RF   +Y  PG
Sbjct  2    RGMKDRIPFAVNNITCVILLSLF-CNAASAVEFNTDVLDAADKKNIDFTRFSEAGYVLPG  60

Query  64   NYl-ldiliddrllPERYLVTYLAVD------EGKSTKLCLTPDLVNLFGLSTEVRESMT  116
            +YL   I+ ++ + P    ++++  +      E K  + CLT+D+V L GL++E  + + 
Sbjct  61   QYLLDVIVNGQSISPASLQISFVEPQSSGDKAEKKLPQACLTSDMVRLMGLTAESLDKVV  120

Query  117  LWNNDKCVAIDEKKEIKIQYDKEKQSLIISIPQAWLAYNDPNWVPPSQWGNGVAGTLLDY  176
             W++++C  ++    + I+ D     L I++PQAWL Y+D+ W+PPS+W++G++G +LDY
Sbjct  121  YWHDGQCADFHGLPGVDIRPDTGAGVLRINMPQAWLEYSDATWLPPSRWDDGIPGLMLDY  180

Query  177  NLFGYHYSPNMGGSTTNFSSYGTTGANMGPWRIRADYQYINTET--AGEH--YRNFDWSQ  232
            NL G       GG + +FS  GT G+N+GPWR+RADYQ  + ++   GE    RNF WS+
Sbjct  181  NLNGTVSRNYQGGDSHQFSYNGTVGGNLGPWRLRADYQGSQEQSRYNGEKTTNRNFTWSR  240

Query  233  VYAFRAIPSIGAKFVGGQTYLNSSIFDSFRFLGTSLSSDERMLPPTLRGYAPQVMGIAHT  292
             Y FRAIP   A++  G+  +NS IF S  + G+SL SD+RMLPP LRGYAPQ+ GIA+T
Sbjct  241  FYLFRAIPRWRANLTLGENNINSDIFRSWSYTGASLESDDRMLPPRLRGYAPQITGIAET  300

Query  293  NARVVLSQNGRVLYQTNVAPGPFVIQDISEAVQGNIDVRVEEEDGRVTVFQVNAASVPFL  352
            NARVV+SQ+GRVLY++ V++GPF IQD+  +V+G +DV V E++GR   FQV++ASVP+L
Sbjct  301  NARVVVSQQGRVLYDSMVPAGPFSIQDLDSSVRGRLDVEVIEQNGRKKTFQVDTASVPYL  360

Query  353  TRKGAVRYKAALGRPM-LGNSASNPTFFSGEFSWGAFNHVSLYGGLMTTSQDYTSAALGI  411
            TR G VRYK   GR+   G+ +  P F +GE SWG  N+ SLYGG + ++ DY + A G 
Sbjct  361  TRPGQVRYKLVSGRSRGYGHETEGPVFATGEASWGLSNQWSLYGGAVLAG-DYNALAAGA  419

Query  412  GQNLYDFGALSIDITHSRAQLPNEEQQNGESYRVNYSKRFEQTDSQISFAGYRFSKKNFM  471
            G +L   G+LS DIT+S A++  E   +G S R++YSKRF+++D++I+FAGYRFS +N+M
Sbjct  420  GWDLGVPGTLSADITQSVARIEGERTFQGKSWRLSYSKRFDNADADITFAGYRFSERNYM  479

Query  472  SMSQYLDWLNGNTALQY---DKQAYTVAANQYLA-WPDITMYLSVTRRTYWNAASSNNYS  527
            +M QY   LN+    +Y   +K+ YTV+ N+ +A W + +  L  +R+TYW+   ++ Y+
Sbjct  480  TMEQY---LNARYRNDYSSREKEMYTVTLNKNVADW-NTSFNLQYSRQTYWDIRKTDYYT  535

Query  528  LSMSKIFDIGTFKGISATISANKVN  552
            +S+++ F++  ++G+     ++ +N
Sbjct  536  VSVNRYFNVFGLQGVRLDCQPQGLN  560

5) YPC_4557 in NC_017265


> AF447814|84|G83|18265942|AAL67415.1|Escherichia_coli_CFT073|-|66287..68050|papCb|-|truncated 
PapC
Length=587

 Score =  350 bits (1315),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 234/565 (42%), Positives = 375/565 (67%), Gaps = 22/565 (3%)

Query  4    NSKRKKTIFLMVKVLTIILVWLFLPESTAVVKFNTNIIDAKDRSNIDLSRFEVDDYTPPG  63
             + + +  F + ++  +IL+ LF  ++++ V FNT+++DA D+ NID++RF   +Y  PG
Sbjct  2    RGMKDRIPFAVNNITCVILLSLF-CNAASAVEFNTDVLDAADKKNIDFTRFSEAGYVLPG  60

Query  64   NYl-ldiliddrllPERYLVTYLAVD------EGKSTKLCLTPDLVNLFGLSTEVRESMT  116
            +YL   I+ ++ + P    ++++  +      E K  + CLT+D+V L GL++E  + + 
Sbjct  61   QYLLDVIVNGQSISPASLQISFVEPQSSGDKAEKKLPQACLTSDMVRLMGLTAESLDKVV  120

Query  117  LWNNDKCVAIDEKKEIKIQYDKEKQSLIISIPQAWLAYNDPNWVPPSQWGNGVAGTLLDY  176
             W++++C  ++    + I+ D     L I++PQAWL Y+D+ W+PPS+W++G++G +LDY
Sbjct  121  YWHDGQCADFHGLPGVDIRPDTGAGVLRINMPQAWLEYSDATWLPPSRWDDGIPGLMLDY  180

Query  177  NLFGYHYSPNMGGSTTNFSSYGTTGANMGPWRIRADYQYINTET--AGEH--YRNFDWSQ  232
            NL G       GG + +FS  GT G+N+GPWR+RADYQ  + ++   GE    RNF WS+
Sbjct  181  NLNGTVSRNYQGGDSHQFSYNGTVGGNLGPWRLRADYQGSQEQSRYNGEKTTNRNFTWSR  240

Query  233  VYAFRAIPSIGAKFVGGQTYLNSSIFDSFRFLGTSLSSDERMLPPTLRGYAPQVMGIAHT  292
             Y FRAIP   A++  G+  +NS IF S  + G+SL SD+RMLPP LRGYAPQ+ GIA+T
Sbjct  241  FYLFRAIPRWRANLTLGENNINSDIFRSWSYTGASLESDDRMLPPRLRGYAPQITGIAET  300

Query  293  NARVVLSQNGRVLYQTNVAPGPFVIQDISEAVQGNIDVRVEEEDGRVTVFQVNAASVPFL  352
            NARVV+SQ+GRVLY++ V++GPF IQD+  +V+G +DV V E++GR   FQV++ASVP+L
Sbjct  301  NARVVVSQQGRVLYDSMVPAGPFSIQDLDSSVRGRLDVEVIEQNGRKKTFQVDTASVPYL  360

Query  353  TRKGAVRYKAALGRPM-LGNSASNPTFFSGEFSWGAFNHVSLYGGLMTTSQDYTSAALGI  411
            TR G VRYK   GR+   G+ +  P F +GE SWG  N+ SLYGG + ++ DY + A G 
Sbjct  361  TRPGQVRYKLVSGRSRGYGHETEGPVFATGEASWGLSNQWSLYGGAVLAG-DYNALAAGA  419

Query  412  GQNLYDFGALSIDITHSRAQLPNEEQQNGESYRVNYSKRFEQTDSQISFAGYRFSKKNFM  471
            G +L   G+LS DIT+S A++  E   +G S R++YSKRF+++D++I+FAGYRFS +N+M
Sbjct  420  GWDLGVPGTLSADITQSVARIEGERTFQGKSWRLSYSKRFDNADADITFAGYRFSERNYM  479

Query  472  SMSQYLDWLNGNTALQY---DKQAYTVAANQYLA-WPDITMYLSVTRRTYWNAASSNNYS  527
            +M QY   LN+    +Y   +K+ YTV+ N+ +A W + +  L  +R+TYW+   ++ Y+
Sbjct  480  TMEQY---LNARYRNDYSSREKEMYTVTLNKNVADW-NTSFNLQYSRQTYWDIRKTDYYT  535

Query  528  LSMSKIFDIGTFKGISATISANKVN  552
            +S+++ F++  ++G+     ++ +N
Sbjct  536  VSVNRYFNVFGLQGVRLDCQPQGLN  560

6) fimD7 in NC_005810


> AF447814|84|G83|18265942|AAL67415.1|Escherichia_coli_CFT073|-|66287..68050|papCb|-|truncated 
PapC
Length=587

 Score =  350 bits (1315),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 234/565 (42%), Positives = 375/565 (67%), Gaps = 22/565 (3%)

Query  4    NSKRKKTIFLMVKVLTIILVWLFLPESTAVVKFNTNIIDAKDRSNIDLSRFEVDDYTPPG  63
             + + +  F + ++  +IL+ LF  ++++ V FNT+++DA D+ NID++RF   +Y  PG
Sbjct  2    RGMKDRIPFAVNNITCVILLSLF-CNAASAVEFNTDVLDAADKKNIDFTRFSEAGYVLPG  60

Query  64   NYl-ldiliddrllPERYLVTYLAVD------EGKSTKLCLTPDLVNLFGLSTEVRESMT  116
            +YL   I+ ++ + P    ++++  +      E K  + CLT+D+V L GL++E  + + 
Sbjct  61   QYLLDVIVNGQSISPASLQISFVEPQSSGDKAEKKLPQACLTSDMVRLMGLTAESLDKVV  120

Query  117  LWNNDKCVAIDEKKEIKIQYDKEKQSLIISIPQAWLAYNDPNWVPPSQWGNGVAGTLLDY  176
             W++++C  ++    + I+ D     L I++PQAWL Y+D+ W+PPS+W++G++G +LDY
Sbjct  121  YWHDGQCADFHGLPGVDIRPDTGAGVLRINMPQAWLEYSDATWLPPSRWDDGIPGLMLDY  180

Query  177  NLFGYHYSPNMGGSTTNFSSYGTTGANMGPWRIRADYQYINTET--AGEH--YRNFDWSQ  232
            NL G       GG + +FS  GT G+N+GPWR+RADYQ  + ++   GE    RNF WS+
Sbjct  181  NLNGTVSRNYQGGDSHQFSYNGTVGGNLGPWRLRADYQGSQEQSRYNGEKTTNRNFTWSR  240

Query  233  VYAFRAIPSIGAKFVGGQTYLNSSIFDSFRFLGTSLSSDERMLPPTLRGYAPQVMGIAHT  292
             Y FRAIP   A++  G+  +NS IF S  + G+SL SD+RMLPP LRGYAPQ+ GIA+T
Sbjct  241  FYLFRAIPRWRANLTLGENNINSDIFRSWSYTGASLESDDRMLPPRLRGYAPQITGIAET  300

Query  293  NARVVLSQNGRVLYQTNVAPGPFVIQDISEAVQGNIDVRVEEEDGRVTVFQVNAASVPFL  352
            NARVV+SQ+GRVLY++ V++GPF IQD+  +V+G +DV V E++GR   FQV++ASVP+L
Sbjct  301  NARVVVSQQGRVLYDSMVPAGPFSIQDLDSSVRGRLDVEVIEQNGRKKTFQVDTASVPYL  360

Query  353  TRKGAVRYKAALGRPM-LGNSASNPTFFSGEFSWGAFNHVSLYGGLMTTSQDYTSAALGI  411
            TR G VRYK   GR+   G+ +  P F +GE SWG  N+ SLYGG + ++ DY + A G 
Sbjct  361  TRPGQVRYKLVSGRSRGYGHETEGPVFATGEASWGLSNQWSLYGGAVLAG-DYNALAAGA  419

Query  412  GQNLYDFGALSIDITHSRAQLPNEEQQNGESYRVNYSKRFEQTDSQISFAGYRFSKKNFM  471
            G +L   G+LS DIT+S A++  E   +G S R++YSKRF+++D++I+FAGYRFS +N+M
Sbjct  420  GWDLGVPGTLSADITQSVARIEGERTFQGKSWRLSYSKRFDNADADITFAGYRFSERNYM  479

Query  472  SMSQYLDWLNGNTALQY---DKQAYTVAANQYLA-WPDITMYLSVTRRTYWNAASSNNYS  527
            +M QY   LN+    +Y   +K+ YTV+ N+ +A W + +  L  +R+TYW+   ++ Y+
Sbjct  480  TMEQY---LNARYRNDYSSREKEMYTVTLNKNVADW-NTSFNLQYSRQTYWDIRKTDYYT  535

Query  528  LSMSKIFDIGTFKGISATISANKVN  552
            +S+++ F++  ++G+     ++ +N
Sbjct  536  VSVNRYFNVFGLQGVRLDCQPQGLN  560

7) YPD8_3564 in NC_017160


> AF447814|84|G83|18265942|AAL67415.1|Escherichia_coli_CFT073|-|66287..68050|papCb|-|truncated 
PapC
Length=587

 Score =  350 bits (1315),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 234/565 (42%), Positives = 375/565 (67%), Gaps = 22/565 (3%)

Query  4    NSKRKKTIFLMVKVLTIILVWLFLPESTAVVKFNTNIIDAKDRSNIDLSRFEVDDYTPPG  63
             + + +  F + ++  +IL+ LF  ++++ V FNT+++DA D+ NID++RF   +Y  PG
Sbjct  2    RGMKDRIPFAVNNITCVILLSLF-CNAASAVEFNTDVLDAADKKNIDFTRFSEAGYVLPG  60

Query  64   NYl-ldiliddrllPERYLVTYLAVD------EGKSTKLCLTPDLVNLFGLSTEVRESMT  116
            +YL   I+ ++ + P    ++++  +      E K  + CLT+D+V L GL++E  + + 
Sbjct  61   QYLLDVIVNGQSISPASLQISFVEPQSSGDKAEKKLPQACLTSDMVRLMGLTAESLDKVV  120

Query  117  LWNNDKCVAIDEKKEIKIQYDKEKQSLIISIPQAWLAYNDPNWVPPSQWGNGVAGTLLDY  176
             W++++C  ++    + I+ D     L I++PQAWL Y+D+ W+PPS+W++G++G +LDY
Sbjct  121  YWHDGQCADFHGLPGVDIRPDTGAGVLRINMPQAWLEYSDATWLPPSRWDDGIPGLMLDY  180

Query  177  NLFGYHYSPNMGGSTTNFSSYGTTGANMGPWRIRADYQYINTET--AGEH--YRNFDWSQ  232
            NL G       GG + +FS  GT G+N+GPWR+RADYQ  + ++   GE    RNF WS+
Sbjct  181  NLNGTVSRNYQGGDSHQFSYNGTVGGNLGPWRLRADYQGSQEQSRYNGEKTTNRNFTWSR  240

Query  233  VYAFRAIPSIGAKFVGGQTYLNSSIFDSFRFLGTSLSSDERMLPPTLRGYAPQVMGIAHT  292
             Y FRAIP   A++  G+  +NS IF S  + G+SL SD+RMLPP LRGYAPQ+ GIA+T
Sbjct  241  FYLFRAIPRWRANLTLGENNINSDIFRSWSYTGASLESDDRMLPPRLRGYAPQITGIAET  300

Query  293  NARVVLSQNGRVLYQTNVAPGPFVIQDISEAVQGNIDVRVEEEDGRVTVFQVNAASVPFL  352
            NARVV+SQ+GRVLY++ V++GPF IQD+  +V+G +DV V E++GR   FQV++ASVP+L
Sbjct  301  NARVVVSQQGRVLYDSMVPAGPFSIQDLDSSVRGRLDVEVIEQNGRKKTFQVDTASVPYL  360

Query  353  TRKGAVRYKAALGRPM-LGNSASNPTFFSGEFSWGAFNHVSLYGGLMTTSQDYTSAALGI  411
            TR G VRYK   GR+   G+ +  P F +GE SWG  N+ SLYGG + ++ DY + A G 
Sbjct  361  TRPGQVRYKLVSGRSRGYGHETEGPVFATGEASWGLSNQWSLYGGAVLAG-DYNALAAGA  419

Query  412  GQNLYDFGALSIDITHSRAQLPNEEQQNGESYRVNYSKRFEQTDSQISFAGYRFSKKNFM  471
            G +L   G+LS DIT+S A++  E   +G S R++YSKRF+++D++I+FAGYRFS +N+M
Sbjct  420  GWDLGVPGTLSADITQSVARIEGERTFQGKSWRLSYSKRFDNADADITFAGYRFSERNYM  479

Query  472  SMSQYLDWLNGNTALQY---DKQAYTVAANQYLA-WPDITMYLSVTRRTYWNAASSNNYS  527
            +M QY   LN+    +Y   +K+ YTV+ N+ +A W + +  L  +R+TYW+   ++ Y+
Sbjct  480  TMEQY---LNARYRNDYSSREKEMYTVTLNKNVADW-NTSFNLQYSRQTYWDIRKTDYYT  535

Query  528  LSMSKIFDIGTFKGISATISANKVN  552
            +S+++ F++  ++G+     ++ +N
Sbjct  536  VSVNRYFNVFGLQGVRLDCQPQGLN  560

8) y4062 in NC_004088


> AF447814|84|G83|18265942|AAL67415.1|Escherichia_coli_CFT073|-|66287..68050|papCb|-|truncated 
PapC
Length=587

 Score =  350 bits (1315),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 234/565 (42%), Positives = 375/565 (67%), Gaps = 22/565 (3%)

Query  4    NSKRKKTIFLMVKVLTIILVWLFLPESTAVVKFNTNIIDAKDRSNIDLSRFEVDDYTPPG  63
             + + +  F + ++  +IL+ LF  ++++ V FNT+++DA D+ NID++RF   +Y  PG
Sbjct  2    RGMKDRIPFAVNNITCVILLSLF-CNAASAVEFNTDVLDAADKKNIDFTRFSEAGYVLPG  60

Query  64   NYl-ldiliddrllPERYLVTYLAVD------EGKSTKLCLTPDLVNLFGLSTEVRESMT  116
            +YL   I+ ++ + P    ++++  +      E K  + CLT+D+V L GL++E  + + 
Sbjct  61   QYLLDVIVNGQSISPASLQISFVEPQSSGDKAEKKLPQACLTSDMVRLMGLTAESLDKVV  120

Query  117  LWNNDKCVAIDEKKEIKIQYDKEKQSLIISIPQAWLAYNDPNWVPPSQWGNGVAGTLLDY  176
             W++++C  ++    + I+ D     L I++PQAWL Y+D+ W+PPS+W++G++G +LDY
Sbjct  121  YWHDGQCADFHGLPGVDIRPDTGAGVLRINMPQAWLEYSDATWLPPSRWDDGIPGLMLDY  180

Query  177  NLFGYHYSPNMGGSTTNFSSYGTTGANMGPWRIRADYQYINTET--AGEH--YRNFDWSQ  232
            NL G       GG + +FS  GT G+N+GPWR+RADYQ  + ++   GE    RNF WS+
Sbjct  181  NLNGTVSRNYQGGDSHQFSYNGTVGGNLGPWRLRADYQGSQEQSRYNGEKTTNRNFTWSR  240

Query  233  VYAFRAIPSIGAKFVGGQTYLNSSIFDSFRFLGTSLSSDERMLPPTLRGYAPQVMGIAHT  292
             Y FRAIP   A++  G+  +NS IF S  + G+SL SD+RMLPP LRGYAPQ+ GIA+T
Sbjct  241  FYLFRAIPRWRANLTLGENNINSDIFRSWSYTGASLESDDRMLPPRLRGYAPQITGIAET  300

Query  293  NARVVLSQNGRVLYQTNVAPGPFVIQDISEAVQGNIDVRVEEEDGRVTVFQVNAASVPFL  352
            NARVV+SQ+GRVLY++ V++GPF IQD+  +V+G +DV V E++GR   FQV++ASVP+L
Sbjct  301  NARVVVSQQGRVLYDSMVPAGPFSIQDLDSSVRGRLDVEVIEQNGRKKTFQVDTASVPYL  360

Query  353  TRKGAVRYKAALGRPM-LGNSASNPTFFSGEFSWGAFNHVSLYGGLMTTSQDYTSAALGI  411
            TR G VRYK   GR+   G+ +  P F +GE SWG  N+ SLYGG + ++ DY + A G 
Sbjct  361  TRPGQVRYKLVSGRSRGYGHETEGPVFATGEASWGLSNQWSLYGGAVLAG-DYNALAAGA  419

Query  412  GQNLYDFGALSIDITHSRAQLPNEEQQNGESYRVNYSKRFEQTDSQISFAGYRFSKKNFM  471
            G +L   G+LS DIT+S A++  E   +G S R++YSKRF+++D++I+FAGYRFS +N+M
Sbjct  420  GWDLGVPGTLSADITQSVARIEGERTFQGKSWRLSYSKRFDNADADITFAGYRFSERNYM  479

Query  472  SMSQYLDWLNGNTALQY---DKQAYTVAANQYLA-WPDITMYLSVTRRTYWNAASSNNYS  527
            +M QY   LN+    +Y   +K+ YTV+ N+ +A W + +  L  +R+TYW+   ++ Y+
Sbjct  480  TMEQY---LNARYRNDYSSREKEMYTVTLNKNVADW-NTSFNLQYSRQTYWDIRKTDYYT  535

Query  528  LSMSKIFDIGTFKGISATISANKVN  552
            +S+++ F++  ++G+     ++ +N
Sbjct  536  VSVNRYFNVFGLQGVRLDCQPQGLN  560

9) YPN_3690 in NC_008149


> AF447814|84|G83|18265942|AAL67415.1|Escherichia_coli_CFT073|-|66287..68050|papCb|-|truncated 
PapC
Length=587

 Score =  350 bits (1315),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 234/565 (42%), Positives = 375/565 (67%), Gaps = 22/565 (3%)

Query  4    NSKRKKTIFLMVKVLTIILVWLFLPESTAVVKFNTNIIDAKDRSNIDLSRFEVDDYTPPG  63
             + + +  F + ++  +IL+ LF  ++++ V FNT+++DA D+ NID++RF   +Y  PG
Sbjct  2    RGMKDRIPFAVNNITCVILLSLF-CNAASAVEFNTDVLDAADKKNIDFTRFSEAGYVLPG  60

Query  64   NYl-ldiliddrllPERYLVTYLAVD------EGKSTKLCLTPDLVNLFGLSTEVRESMT  116
            +YL   I+ ++ + P    ++++  +      E K  + CLT+D+V L GL++E  + + 
Sbjct  61   QYLLDVIVNGQSISPASLQISFVEPQSSGDKAEKKLPQACLTSDMVRLMGLTAESLDKVV  120

Query  117  LWNNDKCVAIDEKKEIKIQYDKEKQSLIISIPQAWLAYNDPNWVPPSQWGNGVAGTLLDY  176
             W++++C  ++    + I+ D     L I++PQAWL Y+D+ W+PPS+W++G++G +LDY
Sbjct  121  YWHDGQCADFHGLPGVDIRPDTGAGVLRINMPQAWLEYSDATWLPPSRWDDGIPGLMLDY  180

Query  177  NLFGYHYSPNMGGSTTNFSSYGTTGANMGPWRIRADYQYINTET--AGEH--YRNFDWSQ  232
            NL G       GG + +FS  GT G+N+GPWR+RADYQ  + ++   GE    RNF WS+
Sbjct  181  NLNGTVSRNYQGGDSHQFSYNGTVGGNLGPWRLRADYQGSQEQSRYNGEKTTNRNFTWSR  240

Query  233  VYAFRAIPSIGAKFVGGQTYLNSSIFDSFRFLGTSLSSDERMLPPTLRGYAPQVMGIAHT  292
             Y FRAIP   A++  G+  +NS IF S  + G+SL SD+RMLPP LRGYAPQ+ GIA+T
Sbjct  241  FYLFRAIPRWRANLTLGENNINSDIFRSWSYTGASLESDDRMLPPRLRGYAPQITGIAET  300

Query  293  NARVVLSQNGRVLYQTNVAPGPFVIQDISEAVQGNIDVRVEEEDGRVTVFQVNAASVPFL  352
            NARVV+SQ+GRVLY++ V++GPF IQD+  +V+G +DV V E++GR   FQV++ASVP+L
Sbjct  301  NARVVVSQQGRVLYDSMVPAGPFSIQDLDSSVRGRLDVEVIEQNGRKKTFQVDTASVPYL  360

Query  353  TRKGAVRYKAALGRPM-LGNSASNPTFFSGEFSWGAFNHVSLYGGLMTTSQDYTSAALGI  411
            TR G VRYK   GR+   G+ +  P F +GE SWG  N+ SLYGG + ++ DY + A G 
Sbjct  361  TRPGQVRYKLVSGRSRGYGHETEGPVFATGEASWGLSNQWSLYGGAVLAG-DYNALAAGA  419

Query  412  GQNLYDFGALSIDITHSRAQLPNEEQQNGESYRVNYSKRFEQTDSQISFAGYRFSKKNFM  471
            G +L   G+LS DIT+S A++  E   +G S R++YSKRF+++D++I+FAGYRFS +N+M
Sbjct  420  GWDLGVPGTLSADITQSVARIEGERTFQGKSWRLSYSKRFDNADADITFAGYRFSERNYM  479

Query  472  SMSQYLDWLNGNTALQY---DKQAYTVAANQYLA-WPDITMYLSVTRRTYWNAASSNNYS  527
            +M QY   LN+    +Y   +K+ YTV+ N+ +A W + +  L  +R+TYW+   ++ Y+
Sbjct  480  TMEQY---LNARYRNDYSSREKEMYTVTLNKNVADW-NTSFNLQYSRQTYWDIRKTDYYT  535

Query  528  LSMSKIFDIGTFKGISATISANKVN  552
            +S+++ F++  ++G+     ++ +N
Sbjct  536  VSVNRYFNVFGLQGVRLDCQPQGLN  560

10) YPDSF_3785 in NC_009381


> AF447814|84|G83|18265942|AAL67415.1|Escherichia_coli_CFT073|-|66287..68050|papCb|-|truncated 
PapC
Length=587

 Score =  350 bits (1315),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 234/565 (42%), Positives = 375/565 (67%), Gaps = 22/565 (3%)

Query  4    NSKRKKTIFLMVKVLTIILVWLFLPESTAVVKFNTNIIDAKDRSNIDLSRFEVDDYTPPG  63
             + + +  F + ++  +IL+ LF  ++++ V FNT+++DA D+ NID++RF   +Y  PG
Sbjct  2    RGMKDRIPFAVNNITCVILLSLF-CNAASAVEFNTDVLDAADKKNIDFTRFSEAGYVLPG  60

Query  64   NYl-ldiliddrllPERYLVTYLAVD------EGKSTKLCLTPDLVNLFGLSTEVRESMT  116
            +YL   I+ ++ + P    ++++  +      E K  + CLT+D+V L GL++E  + + 
Sbjct  61   QYLLDVIVNGQSISPASLQISFVEPQSSGDKAEKKLPQACLTSDMVRLMGLTAESLDKVV  120

Query  117  LWNNDKCVAIDEKKEIKIQYDKEKQSLIISIPQAWLAYNDPNWVPPSQWGNGVAGTLLDY  176
             W++++C  ++    + I+ D     L I++PQAWL Y+D+ W+PPS+W++G++G +LDY
Sbjct  121  YWHDGQCADFHGLPGVDIRPDTGAGVLRINMPQAWLEYSDATWLPPSRWDDGIPGLMLDY  180

Query  177  NLFGYHYSPNMGGSTTNFSSYGTTGANMGPWRIRADYQYINTET--AGEH--YRNFDWSQ  232
            NL G       GG + +FS  GT G+N+GPWR+RADYQ  + ++   GE    RNF WS+
Sbjct  181  NLNGTVSRNYQGGDSHQFSYNGTVGGNLGPWRLRADYQGSQEQSRYNGEKTTNRNFTWSR  240

Query  233  VYAFRAIPSIGAKFVGGQTYLNSSIFDSFRFLGTSLSSDERMLPPTLRGYAPQVMGIAHT  292
             Y FRAIP   A++  G+  +NS IF S  + G+SL SD+RMLPP LRGYAPQ+ GIA+T
Sbjct  241  FYLFRAIPRWRANLTLGENNINSDIFRSWSYTGASLESDDRMLPPRLRGYAPQITGIAET  300

Query  293  NARVVLSQNGRVLYQTNVAPGPFVIQDISEAVQGNIDVRVEEEDGRVTVFQVNAASVPFL  352
            NARVV+SQ+GRVLY++ V++GPF IQD+  +V+G +DV V E++GR   FQV++ASVP+L
Sbjct  301  NARVVVSQQGRVLYDSMVPAGPFSIQDLDSSVRGRLDVEVIEQNGRKKTFQVDTASVPYL  360

Query  353  TRKGAVRYKAALGRPM-LGNSASNPTFFSGEFSWGAFNHVSLYGGLMTTSQDYTSAALGI  411
            TR G VRYK   GR+   G+ +  P F +GE SWG  N+ SLYGG + ++ DY + A G 
Sbjct  361  TRPGQVRYKLVSGRSRGYGHETEGPVFATGEASWGLSNQWSLYGGAVLAG-DYNALAAGA  419

Query  412  GQNLYDFGALSIDITHSRAQLPNEEQQNGESYRVNYSKRFEQTDSQISFAGYRFSKKNFM  471
            G +L   G+LS DIT+S A++  E   +G S R++YSKRF+++D++I+FAGYRFS +N+M
Sbjct  420  GWDLGVPGTLSADITQSVARIEGERTFQGKSWRLSYSKRFDNADADITFAGYRFSERNYM  479

Query  472  SMSQYLDWLNGNTALQY---DKQAYTVAANQYLA-WPDITMYLSVTRRTYWNAASSNNYS  527
            +M QY   LN+    +Y   +K+ YTV+ N+ +A W + +  L  +R+TYW+   ++ Y+
Sbjct  480  TMEQY---LNARYRNDYSSREKEMYTVTLNKNVADW-NTSFNLQYSRQTYWDIRKTDYYT  535

Query  528  LSMSKIFDIGTFKGISATISANKVN  552
            +S+++ F++  ++G+     ++ +N
Sbjct  536  VSVNRYFNVFGLQGVRLDCQPQGLN  560

11) YPD4_3557 in NC_017154


> AF447814|84|G83|18265942|AAL67415.1|Escherichia_coli_CFT073|-|66287..68050|papCb|-|truncated 
PapC
Length=587

 Score =  346 bits (1300),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 233/553 (43%), Positives = 370/553 (67%), Gaps = 22/553 (3%)

Query  3    KVLTIILVWLFLPESTAVVKFNTNIIDAKDRSNIDLSRFEVDDYTPPGNYl-ldiliddr  61
            ++  +IL+ LF  ++++ V FNT+++DA D+ NID++RF   +Y  PG+YL   I+ ++ 
Sbjct  14   NITCVILLSLF-CNAASAVEFNTDVLDAADKKNIDFTRFSEAGYVLPGQYLLDVIVNGQS  72

Query  62   llPERYLVTYLAVD------EGKSTKLCLTPDLVNLFGLSTEVRESMTLWNNDKCVAIDE  115
            + P    ++++  +      E K  + CLT+D+V L GL++E  + +  W++++C  ++ 
Sbjct  73   ISPASLQISFVEPQSSGDKAEKKLPQACLTSDMVRLMGLTAESLDKVVYWHDGQCADFHG  132

Query  116  KKEIKIQYDKEKQSLIISIPQAWLAYNDPNWVPPSQWGNGVAGTLLDYNLFGYHYSPNMG  175
               + I+ D     L I++PQAWL Y+D+ W+PPS+W++G++G +LDYNL G       G
Sbjct  133  LPGVDIRPDTGAGVLRINMPQAWLEYSDATWLPPSRWDDGIPGLMLDYNLNGTVSRNYQG  192

Query  176  GSTTNFSSYGTTGANMGPWRIRADYQYINTET--AGEH--YRNFDWSQVYAFRAIPSIGA  231
            G + +FS  GT G+N+GPWR+RADYQ  + ++   GE    RNF WS+ Y FRAIP   A
Sbjct  193  GDSHQFSYNGTVGGNLGPWRLRADYQGSQEQSRYNGEKTTNRNFTWSRFYLFRAIPRWRA  252

Query  232  KFVGGQTYLNSSIFDSFRFLGTSLSSDERMLPPTLRGYAPQVMGIAHTNARVVLSQNGRV  291
            ++  G+  +NS IF S  + G+SL SD+RMLPP LRGYAPQ+ GIA+TNARVV+SQ+GRV
Sbjct  253  NLTLGENNINSDIFRSWSYTGASLESDDRMLPPRLRGYAPQITGIAETNARVVVSQQGRV  312

Query  292  LYQTNVAPGPFVIQDISEAVQGNIDVRVEEEDGRVTVFQVNAASVPFLTRKGAVRYKAAL  351
            LY++ V++GPF IQD+  +V+G +DV V E++GR   FQV++ASVP+LTR G VRYK   
Sbjct  313  LYDSMVPAGPFSIQDLDSSVRGRLDVEVIEQNGRKKTFQVDTASVPYLTRPGQVRYKLVS  372

Query  352  GRPM-LGNSASNPTFFSGEFSWGAFNHVSLYGGLMTTSQDYTSAALGIGQNLYDFGALSI  410
            GR+   G+ +  P F +GE SWG  N+ SLYGG + ++ DY + A G G +L   G+LS 
Sbjct  373  GRSRGYGHETEGPVFATGEASWGLSNQWSLYGGAVLAG-DYNALAAGAGWDLGVPGTLSA  431

Query  411  DITHSRAQLPNEEQQNGESYRVNYSKRFEQTDSQISFAGYRFSKKNFMSMSQYLDWLNGN  470
            DIT+S A++  E   +G S R++YSKRF+++D++I+FAGYRFS +N+M+M QY   LN+ 
Sbjct  432  DITQSVARIEGERTFQGKSWRLSYSKRFDNADADITFAGYRFSERNYMTMEQY---LNAR  488

Query  471  TALQY---DKQAYTVAANQYLA-WPDITMYLSVTRRTYWNAASSNNYSLSMSKIFDIGTF  526
               +Y   +K+ YTV+ N+ +A W + +  L  +R+TYW+   ++ Y++S+++ F++  +
Sbjct  489  YRNDYSSREKEMYTVTLNKNVADW-NTSFNLQYSRQTYWDIRKTDYYTVSVNRYFNVFGL  547

Query  527  KGISATISANKVN  539
            +G+     ++ +N
Sbjct  548  QGVRLDCQPQGLN  560

12) SDY_2537 in NC_007606


> AF447814|84|G83|18265942|AAL67415.1|Escherichia_coli_CFT073|-|66287..68050|papCb|-|truncated 
PapC
Length=587

 Score =  346 bits (1300),  Expect = 2e-96, Method: Compositional matrix adjust.
 Identities = 218/450 (49%), Positives = 330/450 (74%), Gaps = 13/450 (2%)

Query  1    MAKNLQWIHDGKCLKPGQLEGIDIKADLSQSALVISLPQAYLEYTDTDWDPPSRWDDGIS  60
            + K + W HDG+C     L G+DI++D + + L I++PQA LEY+D+ W PPSRWDDGI+
Sbjct  116  LDKVVYW-HDGQCADFHGLPGVDIRPDTGAGVLRINMPQAWLEYSDATWLPPSRWDDGIP  174

Query  61   GLIADYSITAQTRHEENGGDDSNEISGNGTVGVNLGAWRLRADWQTDYQHSKSNDDDVIN  120
            GL+ DY++ +   ++ +GGD S+++S NGTVG NLG+WRLRAD Q   ++S+ N++    
Sbjct  175  GLMLDYNLNGTVSRNYQGGD-SHQFSYNGTVGGNLGPWRLRADYQGSQEQSRYNGEKT--  231

Query  121  GDDTQKNWEWSRYYAWRALPSLKAKLGLGEDYLNSDIFDGFNYVGGSISTDDQMLPPNLR  180
               T++N  WSR+Y  RA+P  +A+L LGE+ +NSDIF + +Y G+S+ +DD+MLPP LR
Sbjct  232  ---TNRNFTWSRFYLFRAIPRWRANLTLGENNINSDIFRSWSYTGASLESDDRMLPPRLR  288

Query  181  GYAPDISGVAHTTAKVTVSQMGRVIYETQVPAGPFRIQDLGDSVSGTLHIRIEEQNGQVQ  240
            GYAP+I+G+A+T A+V VSQ GRV+Y++ VPAGPF IQDL+ SV G L++ + EQNG+ +
Sbjct  289  GYAPQITGIAETNARVVVSQQGRVLYDSMVPAGPFSIQDLDSSVRGRLDVEVIEQNGRKK  348

Query  241  EYDINTASMPFLTRPGQVRYKLMMGRPQEWGHHVEGGFFSGGEASWGIANGWSLYGGALA  300
             ++++TAS+P+LTRPGQVRYKL+ GR++  GH+ EG  F+ GEASWG++N WSLYGGA+ 
Sbjct  349  TFQVDTASVPYLTRPGQVRYKLVSGRSRGYGHETEGPVFATGEASWGLSNQWSLYGGAVL  408

Query  301  DEHYQSAALGVGRDLSVFGAVAFDITHSHTRLDKETAYGKGSLDGNSFRVSYSKDFDELN  360
              +Y++ A G G+DL+V G+++ DIT+S +R++ E ++     +G+S R+SYSK FD+ +
Sbjct  409  AGDYNALAAGAGWDLGVPGTLSADITQSVARIEGERTF-----QGKSWRLSYSKRFDNAD  463

Query  361  SRVTFAGYRFSEENFMTMSEYLDASDSEMVRTGNDKEMYTATYNQNFRDAGVSVYLNYTR  420
            + +TFAGYRFSE N+MTM +YL+A   +   ++ +KEMYT T N+N  D   S  L+Y+R
Sbjct  464  ADITFAGYRFSERNYMTMEQYLNARYRNDY-SSREKEMYTVTLNKNVADWNTSFNLQYSR  522

Query  421  HTYWDRDEQTNYNVMLSHYFNLGSIRNMSI  450
            +TYWD      Y V +++YFN+ +++ + +
Sbjct  523  QTYWDIRKTDYYTVSVNRYFNVFGLQGVRL  552

13) yfcU in NC_017638


> AF447814|84|G83|18265942|AAL67415.1|Escherichia_coli_CFT073|-|66287..68050|papCb|-|truncated 
PapC
Length=587

 Score =  345 bits (1295),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 237/540 (44%), Positives = 377/540 (70%), Gaps = 21/540 (3%)

Query  10   AEDDIQFDSRFLELKGDTKIDLKRFSSQGYVEPGKYNLQVQLNKQPLAEEYDIYWY----  65
            A   ++F++  L+  +  +ID+ RFS  GYV PG+Y L+V +N Q+++       +    
Sbjct  27   AASAVEFNTDVLDAADKKNIDFTRFSEAGYVLPGQYLLDVIVNGQSISPASLQISFVEPQ  86

Query  66   AGEDDVSKSY--ACLTPELVAQFGLK-EDVAKNLQWSHDGKCLKPGQLEGVEIKADLSQS  122
            ++ D   K    ACLT+++V   GL  E + K + W HDG+C     L GV+I++D + +
Sbjct  87   SSGDKAEKKLPQACLTSDMVRLMGLTAESLDKVVYW-HDGQCADFHGLPGVDIRPDTGAG  145

Query  123  ALVISLPQAYLEYTwpdwdppsrwddGISGIIADYSITAQTRHEENGGDDSNEISGNGTV  182
             L I++PQA LEY+ + W PPSRWDDGI+G++ DY++ +   ++ +GGD S+++S NGTV
Sbjct  146  VLRINMPQAWLEYSDATWLPPSRWDDGIPGLMLDYNLNGTVSRNYQGGD-SHQFSYNGTV  204

Query  183  GVNLGPWRMRADWQTNYQHTRSNddddefggddTQKKWEWSRYYAWRALPSLKAKLALGE  242
            G NLGPWR+RAD Q + +++R N++        T+++  WSR+Y  RA+P  +A+L+LGE
Sbjct  205  GGNLGPWRLRADYQGSQEQSRYNGEKT------TNRNFTWSRFYLFRAIPRWRANLTLGE  258

Query  243  DYLNSDIFDGFNYVGGSVSTDDQMLPPNLRGYAPDISGVAHTTAKVTVSQMGRVIYETQV  302
            + +NSDIF + +Y G+S+ +DD+MLPP LRGYAP+I+G+A+T A+V VSQ GRV+Y++ V
Sbjct  259  NNINSDIFRSWSYTGASLESDDRMLPPRLRGYAPQITGIAETNARVVVSQQGRVLYDSMV  318

Query  303  PAGPFRIQDLGDSVSGTLHIRIEEQNGQVQEYDISTASMPYLTRPGQVRYKIMMGRPQEW  362
            PAGPF IQDL+ SV G L++ + EQNG+ + +++ TAS+PYLTRPGQVRYK++ GR++  
Sbjct  319  PAGPFSIQDLDSSVRGRLDVEVIEQNGRKKTFQVDTASVPYLTRPGQVRYKLVSGRSRGY  378

Query  363  GHHVEGGFFSGAEASWGIANGWSLYGGALGDENYQSAALGVGRDLSTFGAVAFDVTHSHT  422
            GH+ EG  F+ +EASWG++N WSLYGGA+   +Y++ A G G+DL+  G+++ D+T+S +
Sbjct  379  GHETEGPVFATGEASWGLSNQWSLYGGAVLAGDYNALAAGAGWDLGVPGTLSADITQSVA  438

Query  423  KLDKDTAYGKGSLDGNSFRVSYSKDFDQLNSRVTFAGYRFSEENFMTMSEYLDASDSEMV  482
            +++ + ++     +G+S R+SYSK FD+ ++ +TFAGYRFSE N+MTM +YL+A   +  
Sbjct  439  RIEGERTF-----QGKSWRLSYSKRFDNADADITFAGYRFSERNYMTMEQYLNARYRNDY  493

Query  483  RTGNDKEMYTATYNQNFRDAGVSVYLNYTRHTYWDREEQTNYNIMLSHYFNMGSIRNMSV  542
             ++ +KEMYT T N+N  D   S  L+Y+R+TYWD      Y + +++YFN+ +++ + +
Sbjct  494  -SSREKEMYTVTLNKNVADWNTSFNLQYSRQTYWDIRKTDYYTVSVNRYFNVFGLQGVRL  552

14) yfcU in NC_010473


> AF447814|84|G83|18265942|AAL67415.1|Escherichia_coli_CFT073|-|66287..68050|papCb|-|truncated 
PapC
Length=587

 Score =  345 bits (1294),  Expect = 5e-96, Method: Compositional matrix adjust.
 Identities = 242/568 (43%), Positives = 389/568 (69%), Gaps = 26/568 (4%)

Query  1    MPDHSLFRLRILPWCIALAMSGSYSSVWAEDDIQFDSRFLELKGDTKIDLKRFSSQGYVE  60
            M D+  F +  +  C+ L   + + +  A   ++F++  L+  +  +ID+ RFS  GYV 
Sbjct  4    MKDRIPFAVNNIT-CVILL--SLFCN--AASAVEFNTDVLDAADKKNIDFTRFSEAGYVL  58

Query  61   PGKYNLQVQLNKQPLAEEYDIYWY----AGEDDVSKSY--ACLTPELVAQFGLK-EDVAK  113
            PG+Y L+V +N Q+++       +    ++ D   K    ACLT+++V   GL  E + K
Sbjct  59   PGQYLLDVIVNGQSISPASLQISFVEPQSSGDKAEKKLPQACLTSDMVRLMGLTAESLDK  118

Query  114  NLQWSHDGKCLKPGQLEGVEIKADLSQSALVISLPQAYLEYTwpdwdppsrwddGISGII  173
             + W HDG+C     L GV+I++D + + L I++PQA LEY+ + W PPSRWDDGI+G++
Sbjct  119  VVYW-HDGQCADFHGLPGVDIRPDTGAGVLRINMPQAWLEYSDATWLPPSRWDDGIPGLM  177

Query  174  ADYSITAQTRHEENGGDDSNEISGNGTVGVNLGPWRMRADWQTNYQHTRSNddddefggd  233
             DY++ +   ++ +GGD S+++S NGTVG NLGPWR+RAD Q + +++R N++       
Sbjct  178  LDYNLNGTVSRNYQGGD-SHQFSYNGTVGGNLGPWRLRADYQGSQEQSRYNGEKT-----  231

Query  234  dTQKKWEWSRYYAWRALPSLKAKLALGEDYLNSDIFDGFNYVGGSVSTDDQMLPPNLRGY  293
             T+++  WSR+Y  RA+P  +A+L+LGE+ +NSDIF + +Y G+S+ +DD+MLPP LRGY
Sbjct  232  -TNRNFTWSRFYLFRAIPRWRANLTLGENNINSDIFRSWSYTGASLESDDRMLPPRLRGY  290

Query  294  APDISGVAHTTAKVTVSQMGRVIYETQVPAGPFRIQDLGDSVSGTLHIRIEEQNGQVQEY  353
            AP+I+G+A+T A+V VSQ GRV+Y++ VPAGPF IQDL+ SV G L++ + EQNG+ + +
Sbjct  291  APQITGIAETNARVVVSQQGRVLYDSMVPAGPFSIQDLDSSVRGRLDVEVIEQNGRKKTF  350

Query  354  DISTASMPYLTRPGQVRYKIMMGRPQEWGHHVEGGFFSGAEASWGIANGWSLYGGALGDE  413
            ++ TAS+PYLTRPGQVRYK++ GR++  GH+ EG  F+ +EASWG++N WSLYGGA+   
Sbjct  351  QVDTASVPYLTRPGQVRYKLVSGRSRGYGHETEGPVFATGEASWGLSNQWSLYGGAVLAG  410

Query  414  NYQSAALGVGRDLSTFGAVAFDVTHSHTKLDKDTAYGKGSLDGNSFRVSYSKDFDQLNSR  473
            +Y++ A G G+DL+  G+++ D+T+S ++++ + ++     +G+S R+SYSK FD+ ++ 
Sbjct  411  DYNALAAGAGWDLGVPGTLSADITQSVARIEGERTF-----QGKSWRLSYSKRFDNADAD  465

Query  474  VTFAGYRFSEENFMTMSEYLDASDSEMVRTGNDKEMYTATYNQNFRDAGVSVYLNYTRHT  533
            +TFAGYRFSE N+MTM +YL+A   +   ++ +KEMYT T N+N  D   S  L+Y+R+T
Sbjct  466  ITFAGYRFSERNYMTMEQYLNARYRNDY-SSREKEMYTVTLNKNVADWNTSFNLQYSRQT  524

Query  534  YWDREEQTNYNIMLSHYFNMGSIRNMSV  561
            YWD      Y + +++YFN+ +++ + +
Sbjct  525  YWDIRKTDYYTVSVNRYFNVFGLQGVRL  552

15) yfcU in NC_020518


> AF447814|84|G83|18265942|AAL67415.1|Escherichia_coli_CFT073|-|66287..68050|papCb|-|truncated 
PapC
Length=587

 Score =  345 bits (1294),  Expect = 5e-96, Method: Compositional matrix adjust.
 Identities = 242/568 (43%), Positives = 389/568 (69%), Gaps = 26/568 (4%)

Query  1    MPDHSLFRLRILPWCIALAMSGSYSSVWAEDDIQFDSRFLELKGDTKIDLKRFSSQGYVE  60
            M D+  F +  +  C+ L   + + +  A   ++F++  L+  +  +ID+ RFS  GYV 
Sbjct  4    MKDRIPFAVNNIT-CVILL--SLFCN--AASAVEFNTDVLDAADKKNIDFTRFSEAGYVL  58

Query  61   PGKYNLQVQLNKQPLAEEYDIYWY----AGEDDVSKSY--ACLTPELVAQFGLK-EDVAK  113
            PG+Y L+V +N Q+++       +    ++ D   K    ACLT+++V   GL  E + K
Sbjct  59   PGQYLLDVIVNGQSISPASLQISFVEPQSSGDKAEKKLPQACLTSDMVRLMGLTAESLDK  118

Query  114  NLQWSHDGKCLKPGQLEGVEIKADLSQSALVISLPQAYLEYTwpdwdppsrwddGISGII  173
             + W HDG+C     L GV+I++D + + L I++PQA LEY+ + W PPSRWDDGI+G++
Sbjct  119  VVYW-HDGQCADFHGLPGVDIRPDTGAGVLRINMPQAWLEYSDATWLPPSRWDDGIPGLM  177

Query  174  ADYSITAQTRHEENGGDDSNEISGNGTVGVNLGPWRMRADWQTNYQHTRSNddddefggd  233
             DY++ +   ++ +GGD S+++S NGTVG NLGPWR+RAD Q + +++R N++       
Sbjct  178  LDYNLNGTVSRNYQGGD-SHQFSYNGTVGGNLGPWRLRADYQGSQEQSRYNGEKT-----  231

Query  234  dTQKKWEWSRYYAWRALPSLKAKLALGEDYLNSDIFDGFNYVGGSVSTDDQMLPPNLRGY  293
             T+++  WSR+Y  RA+P  +A+L+LGE+ +NSDIF + +Y G+S+ +DD+MLPP LRGY
Sbjct  232  -TNRNFTWSRFYLFRAIPRWRANLTLGENNINSDIFRSWSYTGASLESDDRMLPPRLRGY  290

Query  294  APDISGVAHTTAKVTVSQMGRVIYETQVPAGPFRIQDLGDSVSGTLHIRIEEQNGQVQEY  353
            AP+I+G+A+T A+V VSQ GRV+Y++ VPAGPF IQDL+ SV G L++ + EQNG+ + +
Sbjct  291  APQITGIAETNARVVVSQQGRVLYDSMVPAGPFSIQDLDSSVRGRLDVEVIEQNGRKKTF  350

Query  354  DISTASMPYLTRPGQVRYKIMMGRPQEWGHHVEGGFFSGAEASWGIANGWSLYGGALGDE  413
            ++ TAS+PYLTRPGQVRYK++ GR++  GH+ EG  F+ +EASWG++N WSLYGGA+   
Sbjct  351  QVDTASVPYLTRPGQVRYKLVSGRSRGYGHETEGPVFATGEASWGLSNQWSLYGGAVLAG  410

Query  414  NYQSAALGVGRDLSTFGAVAFDVTHSHTKLDKDTAYGKGSLDGNSFRVSYSKDFDQLNSR  473
            +Y++ A G G+DL+  G+++ D+T+S ++++ + ++     +G+S R+SYSK FD+ ++ 
Sbjct  411  DYNALAAGAGWDLGVPGTLSADITQSVARIEGERTF-----QGKSWRLSYSKRFDNADAD  465

Query  474  VTFAGYRFSEENFMTMSEYLDASDSEMVRTGNDKEMYTATYNQNFRDAGVSVYLNYTRHT  533
            +TFAGYRFSE N+MTM +YL+A   +   ++ +KEMYT T N+N  D   S  L+Y+R+T
Sbjct  466  ITFAGYRFSERNYMTMEQYLNARYRNDY-SSREKEMYTVTLNKNVADWNTSFNLQYSRQT  524

Query  534  YWDREEQTNYNIMLSHYFNMGSIRNMSV  561
            YWD      Y + +++YFN+ +++ + +
Sbjct  525  YWDIRKTDYYTVSVNRYFNVFGLQGVRL  552

16) yfcU in NC_007779


> AF447814|84|G83|18265942|AAL67415.1|Escherichia_coli_CFT073|-|66287..68050|papCb|-|truncated 
PapC
Length=587

 Score =  345 bits (1294),  Expect = 5e-96, Method: Compositional matrix adjust.
 Identities = 242/568 (43%), Positives = 389/568 (69%), Gaps = 26/568 (4%)

Query  1    MPDHSLFRLRILPWCIALAMSGSYSSVWAEDDIQFDSRFLELKGDTKIDLKRFSSQGYVE  60
            M D+  F +  +  C+ L   + + +  A   ++F++  L+  +  +ID+ RFS  GYV 
Sbjct  4    MKDRIPFAVNNIT-CVILL--SLFCN--AASAVEFNTDVLDAADKKNIDFTRFSEAGYVL  58

Query  61   PGKYNLQVQLNKQPLAEEYDIYWY----AGEDDVSKSY--ACLTPELVAQFGLK-EDVAK  113
            PG+Y L+V +N Q+++       +    ++ D   K    ACLT+++V   GL  E + K
Sbjct  59   PGQYLLDVIVNGQSISPASLQISFVEPQSSGDKAEKKLPQACLTSDMVRLMGLTAESLDK  118

Query  114  NLQWSHDGKCLKPGQLEGVEIKADLSQSALVISLPQAYLEYTwpdwdppsrwddGISGII  173
             + W HDG+C     L GV+I++D + + L I++PQA LEY+ + W PPSRWDDGI+G++
Sbjct  119  VVYW-HDGQCADFHGLPGVDIRPDTGAGVLRINMPQAWLEYSDATWLPPSRWDDGIPGLM  177

Query  174  ADYSITAQTRHEENGGDDSNEISGNGTVGVNLGPWRMRADWQTNYQHTRSNddddefggd  233
             DY++ +   ++ +GGD S+++S NGTVG NLGPWR+RAD Q + +++R N++       
Sbjct  178  LDYNLNGTVSRNYQGGD-SHQFSYNGTVGGNLGPWRLRADYQGSQEQSRYNGEKT-----  231

Query  234  dTQKKWEWSRYYAWRALPSLKAKLALGEDYLNSDIFDGFNYVGGSVSTDDQMLPPNLRGY  293
             T+++  WSR+Y  RA+P  +A+L+LGE+ +NSDIF + +Y G+S+ +DD+MLPP LRGY
Sbjct  232  -TNRNFTWSRFYLFRAIPRWRANLTLGENNINSDIFRSWSYTGASLESDDRMLPPRLRGY  290

Query  294  APDISGVAHTTAKVTVSQMGRVIYETQVPAGPFRIQDLGDSVSGTLHIRIEEQNGQVQEY  353
            AP+I+G+A+T A+V VSQ GRV+Y++ VPAGPF IQDL+ SV G L++ + EQNG+ + +
Sbjct  291  APQITGIAETNARVVVSQQGRVLYDSMVPAGPFSIQDLDSSVRGRLDVEVIEQNGRKKTF  350

Query  354  DISTASMPYLTRPGQVRYKIMMGRPQEWGHHVEGGFFSGAEASWGIANGWSLYGGALGDE  413
            ++ TAS+PYLTRPGQVRYK++ GR++  GH+ EG  F+ +EASWG++N WSLYGGA+   
Sbjct  351  QVDTASVPYLTRPGQVRYKLVSGRSRGYGHETEGPVFATGEASWGLSNQWSLYGGAVLAG  410

Query  414  NYQSAALGVGRDLSTFGAVAFDVTHSHTKLDKDTAYGKGSLDGNSFRVSYSKDFDQLNSR  473
            +Y++ A G G+DL+  G+++ D+T+S ++++ + ++     +G+S R+SYSK FD+ ++ 
Sbjct  411  DYNALAAGAGWDLGVPGTLSADITQSVARIEGERTF-----QGKSWRLSYSKRFDNADAD  465

Query  474  VTFAGYRFSEENFMTMSEYLDASDSEMVRTGNDKEMYTATYNQNFRDAGVSVYLNYTRHT  533
            +TFAGYRFSE N+MTM +YL+A   +   ++ +KEMYT T N+N  D   S  L+Y+R+T
Sbjct  466  ITFAGYRFSERNYMTMEQYLNARYRNDY-SSREKEMYTVTLNKNVADWNTSFNLQYSRQT  524

Query  534  YWDREEQTNYNIMLSHYFNMGSIRNMSV  561
            YWD      Y + +++YFN+ +++ + +
Sbjct  525  YWDIRKTDYYTVSVNRYFNVFGLQGVRL  552