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Homologs of tnpE gene of AF141323

DNA-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) p1ECUMN_0017
( - )

NC_011749
(Escherichia coli UMN026)

e-178

97.9

2) EC042_pAA006
( - )

NC_017627
(Escherichia coli 042)

e-170

3) EC042_4578
( - )

NC_017626
(Escherichia coli 042)

e-165

4) EC042_pAA156
( - )

NC_017627
(Escherichia coli 042)

e-163

95.8

5) unnamed
( - )

NC_013353
(Escherichia coli 12009)

e-150

95.8

6) unnamed
( - )

NC_013353
(Escherichia coli 12009)

e-150

95.8

7) ECO103_3579
( - )

NC_013353
(Escherichia coli 12009)

e-150

95.8

8) ECO103_4899
( - )

NC_013353
(Escherichia coli 12009)

e-150

95.8

9) unnamed
( - )

NC_007608
(Shigella boydii Sb227)

e-137

100

10) ECO26_p1-48
( - )

NC_013369
(Escherichia coli 11368)

e-119

95.4

11) ECO111_0804
( - )

NC_013364
(Escherichia coli 11128)

e-119

95.4

• Sequence Alignments

1) p1ECUMN_0017 in NC_011749


>AF141323|9|G9|5532454|AAD44738.1|Shigella_flexneri_5a_str._M90T|-|6721..7047|tnpE|-|TnpE 
          Length = 327

 Score = 621 bits (1603), Expect = e-178
 Identities = 320/327 (98%)
 Strand = Plus / Plus

Query: 1   atgactaaaaatactcgtttttcccccgaagtccgtcaacgggcagtccgtatggttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgactaaaaatactcgtttttcccccgaagtccgtcaacgggcagtccgtatggttctg 60

Query: 61  gaaagtcagggcgaatatgactcacaatgggcgacaatttgttccattgccccaaagatt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 61  gaaagtcagggcgaatatgactcacaatgggcgacaatttgttccattgctccaaagatt 120

Query: 121 ggctgtacaccggagactctgcgtgtctgggtacgccagcatgagcgggataccggaggc 180
           |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 121 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggggc 180

Query: 181 ggtgatggcgggctcaccaccgctgaacgtcagcgtctgaaagagctggaacgtgaaaat 240
           |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 181 ggtgatggagggctcaccaccgctgaacgtcagcgtctgaaagagctggagcgtgaaaat 240

Query: 241 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttattttgcgaaggcg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttattttgcgaaggcg 300

Query: 301 gagttcgaccgcctctggaaaaagtga 327
           ||||||||||||||||||||||| |||
Sbjct: 301 gagttcgaccgcctctggaaaaaatga 327

2) EC042_pAA006 in NC_017627


>AF141323|9|G9|5532454|AAD44738.1|Shigella_flexneri_5a_str._M90T|-|6721..7047|tnpE|-|TnpE 
          Length = 327

 Score = 595 bits (1535), Expect = e-170
 Identities = 313/327 (96%)
 Strand = Plus / Plus

Query: 1   atgactaaaaatactcgtttt-cccccgaagtccgtcagagggcgattcgtatggttctg 59
           ||||||||||||||||||||| ||||||||||||||||  ||||  | ||||||||||||
Sbjct: 1   atgactaaaaatactcgtttttcccccgaagtccgtcaacgggcagtccgtatggttctg 60

Query: 60  gaaagtcagggcgaatatgactcacaatgggcggtaatttgttccattgccccaaagatt 119
           |||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||
Sbjct: 61  gaaagtcagggcgaatatgactcacaatgggcgacaatttgttccattgctccaaagatt 120

Query: 120 ggctgtacaccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggggc 179
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggggc 180

Query: 180 ggtgatggcgggctcaccactgctgaacgtcagcgtctgaaagagctggagcgtgaaaat 239
           |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtgatggagggctcaccaccgctgaacgtcagcgtctgaaagagctggagcgtgaaaat 240

Query: 240 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttattttgcgaaggcg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttattttgcgaaggcg 300

Query: 300 aggttcgaccgcctctggaaaaaatga 326
             |||||||||||||||||||||||||
Sbjct: 301 gagttcgaccgcctctggaaaaaatga 327

3) EC042_4578 in NC_017626


>AF141323|9|G9|5532454|AAD44738.1|Shigella_flexneri_5a_str._M90T|-|6721..7047|tnpE|-|TnpE 
          Length = 327

 Score = 579 bits (1494), Expect = e-165
 Identities = 307/324 (95%)
 Strand = Plus / Plus

Query: 1   atgactaaaaatactcgtttttcccccgaagttcgtcatagggtgatacgtatagttctg 60
           |||||||||||||||||||||||||||||||| |||||  |||   | ||||| ||||||
Sbjct: 1   atgactaaaaatactcgtttttcccccgaagtccgtcaacgggcagtccgtatggttctg 60

Query: 61  gaaagtcagg-cgaatatgactcacaatgggcggtagtttgttccattgccccaaagatt 119
           |||||||||| ||||||||||||||||||||||  | ||||||||||||| |||||||||
Sbjct: 61  gaaagtcagggcgaatatgactcacaatgggcgacaatttgttccattgctccaaagatt 120

Query: 120 ggctgtacgccagagaccctgcgtgtctgggttcgccagcatgagcgggataccaggggc 179
           ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 121 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggggc 180

Query: 180 ggtgatggagggctcaccaccgctgaacgtcagcgtctgaaagagctggagcgtgaaaat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtgatggagggctcaccaccgctgaacgtcagcgtctgaaagagctggagcgtgaaaat 240

Query: 240 cgtgaactgcgccgcagtagcgatatccttcgccaggcttccgcttattttgcgaaggcg 299
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttattttgcgaaggcg 300

Query: 300 gagttcgaccgcctctggaaaaaa 323
           ||||||||||||||||||||||||
Sbjct: 301 gagttcgaccgcctctggaaaaaa 324

4) EC042_pAA156 in NC_017627


>AF141323|9|G9|5532454|AAD44738.1|Shigella_flexneri_5a_str._M90T|-|6721..7047|tnpE|-|TnpE 
          Length = 327

 Score = 571 bits (1472), Expect = e-163
 Identities = 296/309 (96%)
 Strand = Plus / Plus

Query: 1   ttttcccccgaagtccgtcagcgggcgattcgtatggttctggaaagtcaggatgaatat 60
           |||||||||||||||||||| |||||  | ||||||||||||||||||||||  ||||||
Sbjct: 19  ttttcccccgaagtccgtcaacgggcagtccgtatggttctggaaagtcagggcgaatat 78

Query: 61  gactcacagtgggcggcaatttgttccattgccccaaagattggctgtacgccggagact 120
           |||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 79  gactcacaatgggcgacaatttgttccattgctccaaagattggctgtacgccggagact 138

Query: 121 ctgcgtgtctgggttcgccagcatgagcgggataccgggggcggtgatggtgggctcacc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 139 ctgcgtgtctgggttcgccagcatgagcgggataccgggggcggtgatggagggctcacc 198

Query: 181 agcgctgaacgtcagcgtctgaaagagctggaacgtgaaaatcgtgaactgcgccgcagt 240
           | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 199 accgctgaacgtcagcgtctgaaagagctggagcgtgaaaatcgtgaactgcgccgcagt 258

Query: 241 aacgatattcttcgccaggcttccgcttattttgcgaaggcggagttcgaccgcctctgg 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aacgatatccttcgccaggcttccgcttattttgcgaaggcggagttcgaccgcctctgg 318

Query: 301 aaaaaatga 309
           |||||||||
Sbjct: 319 aaaaaatga 327

5) unnamed in NC_013353


>AF141323|9|G9|5532454|AAD44738.1|Shigella_flexneri_5a_str._M90T|-|6721..7047|tnpE|-|TnpE 
          Length = 327

 Score = 527 bits (1361), Expect = e-150
 Identities = 276/288 (96%)
 Strand = Plus / Plus

Query: 55  atgactaaaaatacacgtttttcccccgaagtccgtcaacgggcagttcgtatggttctg 114
           |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1   atgactaaaaatactcgtttttcccccgaagtccgtcaacgggcagtccgtatggttctg 60

Query: 115 gaaagtcagggcgaatatgactcacaatgggcggcaatttgttccattaccccaaagatt 174
           ||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||
Sbjct: 61  gaaagtcagggcgaatatgactcacaatgggcgacaatttgttccattgctccaaagatt 120

Query: 175 ggctgtacgccggagactctgcgtgtctgggtacgccagcatgagcgggataccggaggc 234
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 121 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggggc 180

Query: 235 ggtgatggtgggctcaccaccactgaacgtcagcctctgaaagagctggagcgtaaaaat 294
           |||||||| |||||||||||| |||||||||||| ||||||||||||||||||| |||||
Sbjct: 181 ggtgatggagggctcaccaccgctgaacgtcagcgtctgaaagagctggagcgtgaaaat 240

Query: 295 cgtgaactgcgccgcagtaacgatatccttcgccagacttccgcttat 342
           |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 241 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttat 288

6) ECO103_3579 in NC_013353


>AF141323|9|G9|5532454|AAD44738.1|Shigella_flexneri_5a_str._M90T|-|6721..7047|tnpE|-|TnpE 
          Length = 327

 Score = 527 bits (1361), Expect = e-150
 Identities = 276/288 (96%)
 Strand = Plus / Plus

Query: 1   atgactaaaaatacacgtttttcccccgaagtccgtcaacgggcagttcgtatggttctg 60
           |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1   atgactaaaaatactcgtttttcccccgaagtccgtcaacgggcagtccgtatggttctg 60

Query: 61  gaaagtcagggcgaatatgactcacaatgggcggcaatttgttccattaccccaaagatt 120
           ||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||
Sbjct: 61  gaaagtcagggcgaatatgactcacaatgggcgacaatttgttccattgctccaaagatt 120

Query: 121 ggctgtacgccggagactctgcgtgtctgggtacgccagcatgagcgggataccggaggc 180
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 121 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggggc 180

Query: 181 ggtgatggtgggctcaccaccactgaacgtcagcctctgaaagagctggagcgtaaaaat 240
           |||||||| |||||||||||| |||||||||||| ||||||||||||||||||| |||||
Sbjct: 181 ggtgatggagggctcaccaccgctgaacgtcagcgtctgaaagagctggagcgtgaaaat 240

Query: 241 cgtgaactgcgccgcagtaacgatatccttcgccagacttccgcttat 288
           |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 241 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttat 288

7) ECO103_4899 in NC_013353


>AF141323|9|G9|5532454|AAD44738.1|Shigella_flexneri_5a_str._M90T|-|6721..7047|tnpE|-|TnpE 
          Length = 327

 Score = 527 bits (1361), Expect = e-150
 Identities = 276/288 (96%)
 Strand = Plus / Plus

Query: 1   atgactaaaaatacacgtttttcccccgaagtccgtcaacgggcagttcgtatggttctg 60
           |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1   atgactaaaaatactcgtttttcccccgaagtccgtcaacgggcagtccgtatggttctg 60

Query: 61  gaaagtcagggcgaatatgactcacaatgggcggcaatttgttccattaccccaaagatt 120
           ||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||
Sbjct: 61  gaaagtcagggcgaatatgactcacaatgggcgacaatttgttccattgctccaaagatt 120

Query: 121 ggctgtacgccggagactctgcgtgtctgggtacgccagcatgagcgggataccggaggc 180
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 121 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggggc 180

Query: 181 ggtgatggtgggctcaccaccactgaacgtcagcctctgaaagagctggagcgtaaaaat 240
           |||||||| |||||||||||| |||||||||||| ||||||||||||||||||| |||||
Sbjct: 181 ggtgatggagggctcaccaccgctgaacgtcagcgtctgaaagagctggagcgtgaaaat 240

Query: 241 cgtgaactgcgccgcagtaacgatatccttcgccagacttccgcttat 288
           |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 241 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttat 288

8) unnamed in NC_013353


>AF141323|9|G9|5532454|AAD44738.1|Shigella_flexneri_5a_str._M90T|-|6721..7047|tnpE|-|TnpE 
          Length = 327

 Score = 527 bits (1361), Expect = e-150
 Identities = 276/288 (96%)
 Strand = Plus / Plus

Query: 55  atgactaaaaatacacgtttttcccccgaagtccgtcaacgggcagttcgtatggttctg 114
           |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1   atgactaaaaatactcgtttttcccccgaagtccgtcaacgggcagtccgtatggttctg 60

Query: 115 gaaagtcagggcgaatatgactcacaatgggcggcaatttgttccattaccccaaagatt 174
           ||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||
Sbjct: 61  gaaagtcagggcgaatatgactcacaatgggcgacaatttgttccattgctccaaagatt 120

Query: 175 ggctgtacgccggagactctgcgtgtctgggtacgccagcatgagcgggataccggaggc 234
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 121 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggggc 180

Query: 235 ggtgatggtgggctcaccaccactgaacgtcagcctctgaaagagctggagcgtaaaaat 294
           |||||||| |||||||||||| |||||||||||| ||||||||||||||||||| |||||
Sbjct: 181 ggtgatggagggctcaccaccgctgaacgtcagcgtctgaaagagctggagcgtgaaaat 240

Query: 295 cgtgaactgcgccgcagtaacgatatccttcgccagacttccgcttat 342
           |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 241 cgtgaactgcgccgcagtaacgatatccttcgccaggcttccgcttat 288

9) unnamed in NC_007608


>AF141323|9|G9|5532454|AAD44738.1|Shigella_flexneri_5a_str._M90T|-|6721..7047|tnpE|-|TnpE 
          Length = 327

 Score = 486 bits (1253), Expect = e-137
 Identities = 247/247 (100%)
 Strand = Plus / Plus

Query: 55  atgactaaaaatactcgtttttcccccgaagtccgtcaacgggcagtccgtatggttctg 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgactaaaaatactcgtttttcccccgaagtccgtcaacgggcagtccgtatggttctg 60

Query: 115 gaaagtcagggcgaatatgactcacaatgggcgacaatttgttccattgctccaaagatt 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaaagtcagggcgaatatgactcacaatgggcgacaatttgttccattgctccaaagatt 120

Query: 175 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggggc 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggctgtacgccggagactctgcgtgtctgggttcgccagcatgagcgggataccgggggc 180

Query: 235 ggtgatggagggctcaccaccgctgaacgtcagcgtctgaaagagctggagcgtgaaaat 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtgatggagggctcaccaccgctgaacgtcagcgtctgaaagagctggagcgtgaaaat 240

Query: 295 cgtgaac 301
           |||||||
Sbjct: 241 cgtgaac 247

10) ECO26_p1-48 in NC_013369


>AF141323|9|G9|5532454|AAD44738.1|Shigella_flexneri_5a_str._M90T|-|6721..7047|tnpE|-|TnpE 
          Length = 327

 Score = 426 bits (1099), Expect = e-119
 Identities = 229/241 (95%)
 Strand = Plus / Plus

Query: 1   atgggcggcaatttgttccattgc-ccaaagattggctgtacaccggagactctgcgtgt 59
           ||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 87  atgggcgacaatttgttccattgctccaaagattggctgtacgccggagactctgcgtgt 146

Query: 60  ctggggacgccagcatgagcgggataccgggagcggtgatggtgggctcaccagcgctga 119
           |||||  |||||||||||||||||||||||| |||||||||| |||||||||| ||||||
Sbjct: 147 ctgggttcgccagcatgagcgggataccgggggcggtgatggagggctcaccaccgctga 206

Query: 120 acgtcagcgtctgaaagagctggaacgtgaaaaccgtgaactgcgccgcagtaacgatat 179
           |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 207 acgtcagcgtctgaaagagctggagcgtgaaaatcgtgaactgcgccgcagtaacgatat 266

Query: 180 ccttcgccaggcttccgcttattttgcgaaggccgagttcgaccgcctctggaaaaaata 239
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| 
Sbjct: 267 ccttcgccaggcttccgcttattttgcgaaggcggagttcgaccgcctctggaaaaaatg 326

Query: 240 a 240
           |
Sbjct: 327 a 327

11) ECO111_0804 in NC_013364


>AF141323|9|G9|5532454|AAD44738.1|Shigella_flexneri_5a_str._M90T|-|6721..7047|tnpE|-|TnpE 
          Length = 327

 Score = 425 bits (1096), Expect = e-119
 Identities = 229/241 (95%)
 Strand = Plus / Plus

Query: 1   atgggcggcaatttgttccattgc-ccaaagattggctgtacaccggagactctgcgtgt 59
           ||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 87  atgggcgacaatttgttccattgctccaaagattggctgtacgccggagactctgcgtgt 146

Query: 60  ctggggacgcctgcatgagagggataccgggagcggtgatggtgggctcaccagcgctga 119
           |||||  |||| ||||||| ||||||||||| |||||||||| |||||||||| ||||||
Sbjct: 147 ctgggttcgccagcatgagcgggataccgggggcggtgatggagggctcaccaccgctga 206

Query: 120 acgtcagcgtctgaaagagctggaacgtgaaaaccgtgaactgcgccgcagtaacgatat 179
           |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 207 acgtcagcgtctgaaagagctggagcgtgaaaatcgtgaactgcgccgcagtaacgatat 266

Query: 180 ccttcgccaggcttccgcttattttgcgaaggcggagttcgaccgcctctggaaaaaatg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ccttcgccaggcttccgcttattttgcgaaggcggagttcgaccgcctctggaaaaaatg 326

Query: 240 a 240
           |
Sbjct: 327 a 327