Pathogenicity Island: tcd island

• General information

Name : tcd island
Host strain : Photorhabdus luminescens W14
Function : tc (Toxin complex; tcdA-lkie, tcdB-like, tccC-like)
Insertion site : tRNA-aspV

• GenBank accessions: 1 records

1) AF346500 (127816 bp)

    Definition : Photorhabdus luminescens strain W14 toxin complex pathogenicity island 1, partial sequence.

    Publication :
    - Waterfield,N.R., Bowen,D.J., Fetherston,J.D., Perry,R.D. and ffrench-Constant,R.H., "The tc genes of Photorhabdus: a growing family", Trends Microbiol. 9 (4), 185-191 (2001) PUBMED 11286884.

    - Waterfield,N.R., Daborn,P.J. and ffrench-Constant,R.H., "Genomic islands in Photorhabdus", Trends Microbiol. 10 (12), 541-545 (2002) PUBMED 12564983.

    - ffrench-Constant,R.H., Bowen,D.J. and Waterfield,N.R., "Direct Submission", Submitted (19-JAN-2001) Biology and Biochemistry, University of Bath, Claverton Down, Bath BA2 7AY, UK.

    - Waterfield,N.R. and ffrench-Constant,R.H., "Direct Submission", Submitted (22-AUG-2002) Biology and Biochemistry, University of Bath, Claverton Down, Bath BA2 7AY, UK REMARK Sequence update by submitter.


• PAI-like regions homologous to this PAI (genomes and locations)

NC_020063 (Enterobacteriaceae bacterium FGI 57): 3.8 Mb
NC_017626 (Escherichia coli 042): 0.2 Mb
NC_013364 (Escherichia coli 11128): 0.2 Mb
NC_013353 (Escherichia coli 12009): 0.2 Mb
NC_018650 (Escherichia coli 2009EL-2050): 4.2 Mb
NC_018661 (Escherichia coli 2009EL-2071): 4.2 Mb
NC_018658 (Escherichia coli 2011C-3493): 4.2 Mb
NC_008253 (Escherichia coli 536): 0.2 Mb
NC_011748 (Escherichia coli 55989): 0.2 Mb
NC_017631 (Escherichia coli ABU 83972): 0.2 Mb
NC_008563 (Escherichia coli APEC O1): 0.2 Mb
NC_010468 (Escherichia coli ATCC 8739): 0.8, 3.8 Mb
NC_013941 (Escherichia coli CB9615): 0.2 Mb
NC_004431 (Escherichia coli CFT073): 0.2 Mb
NC_017652 (Escherichia coli clone D i14): 0.2 Mb
NC_017651 (Escherichia coli clone D i2): 0.2 Mb
NC_017625 (Escherichia coli DH1): 0.8 Mb
NC_017638 (Escherichia coli DH1): 3.0 Mb
NC_009801 (Escherichia coli E24377A): 0.2 Mb
NC_011353 (Escherichia coli EC4115): 0.2 Mb
NC_011745 (Escherichia coli ED1a): 0.2 Mb
NC_002655 (Escherichia coli EDL933): 0.2 Mb
NC_017633 (Escherichia coli ETEC H10407): 0.2, 3.4 Mb
NC_009800 (Escherichia coli HS): 0.2 Mb
NC_011741 (Escherichia coli IAI1): 0.2 Mb
NC_017628 (Escherichia coli IHE3034): 0.2 Mb
NC_007779 (Escherichia coli K-12): 3.1 Mb
NC_012759 (Escherichia coli K-12): 3.0 Mb
NC_020518 (Escherichia coli K-12): 2.6 Mb
NC_000913 (Escherichia coli K12): 3.1 Mb
NC_016902 (Escherichia coli KO11FL): 3.8 Mb
NC_017660 (Escherichia coli KO11FL): 0.2 Mb
NC_011993 (Escherichia coli LF82): 0.2 Mb
NC_022364 (Escherichia coli LY180): 0.2 Mb
NC_017634 (Escherichia coli NRG 857C): 0.2 Mb
NC_017663 (Escherichia coli P12b): 3.3 Mb
NC_022370 (Escherichia coli PMV-1): 0.2 Mb
NC_017656 (Escherichia coli RM12579): 0.2 Mb
NC_011742 (Escherichia coli S88): 0.2 Mb
NC_002695 (Escherichia coli Sakai): 0.2 Mb
NC_011415 (Escherichia coli SE11): 0.2 Mb
NC_013008 (Escherichia coli TW14359): 0.2 Mb
NC_017632 (Escherichia coli UM146): 3.3 Mb
NC_011751 (Escherichia coli UMN026): 0.2 Mb
NC_017641 (Escherichia coli UMNK88): 0.2 Mb
NC_007946 (Escherichia coli UTI89): 0.2 Mb
NC_017635 (Escherichia coli W): 0.2 Mb
NC_017664 (Escherichia coli W): 0.2 Mb
NC_017906 (Escherichia coli Xuzhou21): 0.2 Mb
NC_012962 (Photorhabdus asymbiotica ATCC 43949): 1.1 Mb
NC_016818 (Rahnella aquatilis CIP 78.65): 2.9 Mb
NC_021820 (Salmonella enterica 08-1736): 1.6 Mb
NC_016856 (Salmonella enterica 14028S): 0.3 Mb
NC_011274 (Salmonella enterica 287/91): 0.3 Mb
NC_022241 (Salmonella enterica 3114): 0.3 Mb
NC_021810 (Salmonella enterica 41578): 2.1 Mb
NC_017046 (Salmonella enterica 798): 0.3 Mb
NC_011147 (Salmonella enterica AKU12601): 2.5 Mb
NC_006511 (Salmonella enterica ATCC 9150): 2.5 Mb
NC_017623 (Salmonella enterica B182): 1.0 Mb
NC_022221 (Salmonella enterica CDC1983-67): 2.7 Mb
NC_021844 (Salmonella enterica CFSAN000189): 3.7 Mb
NC_021814 (Salmonella enterica CFSAN001921): 3.2 Mb
NC_021818 (Salmonella enterica CFSAN002050): 1.3 Mb
NC_021812 (Salmonella enterica CFSAN002069): 1.6 Mb
NC_003198 (Salmonella enterica CT18): 0.3 Mb
NC_011205 (Salmonella enterica CT_02021853): 0.3 Mb
NC_011094 (Salmonella enterica CVM19633): 0.3 Mb
NC_016854 (Salmonella enterica D23580): 0.3 Mb
NC_003197 (Salmonella enterica LT2): 0.3 Mb
NC_016832 (Salmonella enterica P-stx-12): 2.6 Mb
NC_011294 (Salmonella enterica P125109): 0.3 Mb
NC_012125 (Salmonella enterica RKS4594): 0.3 Mb
NC_016831 (Salmonella enterica RKS5078): 2.7 Mb
NC_021984 (Salmonella enterica S06004): 2.7 Mb
NC_006905 (Salmonella enterica SC-B67): 0.3 Mb
NC_010102 (Salmonella enterica SGSC4150; SPB7): 2.8 Mb
NC_016810 (Salmonella enterica SL1344): 0.3 Mb
NC_011080 (Salmonella enterica SL254): 0.3 Mb
NC_011083 (Salmonella enterica SL476): 0.3 Mb
NC_016857 (Salmonella enterica ST4/74): 0.3 Mb
NC_016860 (Salmonella enterica T000240): 0.3 Mb
NC_004631 (Salmonella enterica Ty2): 2.6 Mb
NC_021176 (Salmonella enterica Ty21a): 2.6 Mb
NC_021151 (Salmonella enterica U288): 2.8 Mb
NC_016863 (Salmonella enterica UK-1): 0.3 Mb
NC_021902 (Salmonella enterica USMARC-S3124.1): 1.3 Mb
NC_017328 (Shigella flexneri 2002017): 0.2 Mb
NC_004741 (Shigella flexneri 2457T): 0.2 Mb
NC_016822 (Shigella sonnei 53G): 0.2 Mb
NC_007384 (Shigella sonnei Ss046): 0.2 Mb
NC_013892 (Xenorhabdus bovienii SS-2004): 3.0 Mb
NC_005810 (Yersinia pestis 91001): 4.4 Mb
NC_017168 (Yersinia pestis A1122): 1.7 Mb
NC_008150 (Yersinia pestis Antiqua): 4.1 Mb
NC_003143 (Yersinia pestis CO92): 4.1 Mb
NC_017154 (Yersinia pestis D106004): 4.0 Mb
NC_017265 (Yersinia pestis Harbin 35): 4.2 Mb
NC_004088 (Yersinia pestis KIM): 0.2 Mb
NC_008149 (Yersinia pestis Nepal516): 4.0 Mb
NC_009381 (Yersinia pestis Pestoides F): 0.3 Mb
NC_014029 (Yersinia pestis Z176003): 4.1 Mb
NC_009708 (Yersinia pseudotuberculosis IP 31758): 0.5 Mb