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Publication : - Araki,H., Tian,D., Goss,E.M., Jakob,K., Halldorsdottir,S.S., Kreitman,M. and Bergelson,J., "Presence/absence polymorphism for alternative pathogenicity islands in Pseudomonas viridiflava, a pathogen of Arabidopsis", Proc. Natl. Acad. Sci. U.S.A. 103 (15), 5887-5892 (2006) PUBMED 16581904. - Araki,H., Tian,D., Goss,E.M., Jakob,K., Kreitman,M. and Bergelson,J., "Direct Submission", Submitted (12-APR-2004) Ecology and Evolution, University of Chicago, 1101 E. 57th St., Chicago, IL 60637, USA. |
No | Name | GenBank Accn | Position | Size(bp) | Strand | Virulence/Resistance | Description |
1 | secD | AAT96119.1 | 1057-2925 | 1869 | - | Not tested | - |
2 | yajC | AAT96120.1 | 2988-3323 | 336 | - | Not tested | - |
3 | tgt | AAT96121.1 | 3378-4511 | 1134 | - | Not tested | - |
4 | queA | AAT96122.1 | 4508-5572 | 1065 | - | Not tested | - |
5 | unnamed | AAT96123.1 | 5920-6498 | 579 | + | Not tested | - |
6 | unnamed | AAT96124.1 | 6833-7156 | 324 | - | Not tested | - |
7 | unnamed | AAT96125.1 | 7159-8004 | 846 | - | Not tested | - |
8 | unnamed | AAT96126.1 | 8404-9129 | 726 | + | Not tested | - |
9 | unnamed | AAT96127.1 | 9327-9887 | 561 | + | Not tested | - |
10 | unnamed | AAT96128.1 | 10172-10687 | 516 | + | Not tested | - |
11 | unnamed | AAT96129.1 | 10773-11183 | 411 | + | Not tested | - |
12 | unnamed | AAT96130.1 | 11318-11737 | 420 | - | Not tested | - |
13 | unnamed | AAT96131.1 | 11879-12208 | 330 | - | Not tested | - |
14 | unnamed | AAT96132.1 | 12259-12564 | 306 | + | Not tested | - |
15 | unnamed | AAT96133.1 | 12687-13082 | 396 | + | Not tested | - |
16 | hoppsyA | AAT96134.1 | 13286-14434 | 1149 | - | Not tested | - |
17 | schA | AAT96135.1 | 14448-14828 | 381 | - | Not tested | - |
18 | hrpK | AAT96136.1 | 14966-17245 | 2280 | - | Virulence | - |
19 | hrpL | AAT96137.1 | 17332-17886 | 555 | - | Virulence | - |
20 | hrpJ | AAT96138.1 | 18131-19234 | 1104 | + | Virulence | - |
21 | hrcV | AAT96139.1 | 19234-21333 | 2100 | + | Virulence | - |
22 | hrpQ | AAT96140.1 | 21367-22347 | 981 | + | Virulence | - |
23 | hrcN | AAT96141.1 | 22341-23693 | 1353 | + | Virulence | - |
24 | hrpO | AAT96142.1 | 23697-24143 | 447 | + | Virulence | - |
25 | hrpP | AAT96143.1 | 24150-24743 | 594 | + | Virulence | - |
26 | hrcQa | AAT96144.1 | 24740-25456 | 717 | + | Virulence | - |
27 | hrcQb | AAT96145.1 | 25278-25838 | 561 | + | Virulence | - |
28 | hrcR | AAT96146.1 | 25835-26488 | 654 | + | Virulence | - |
29 | hrcS | AAT96147.1 | 26496-26762 | 267 | + | Virulence | - |
30 | hrcT | AAT96148.1 | 26763-27557 | 795 | + | Virulence | - |
31 | hrcU | AAT96149.1 | 27554-28633 | 1080 | + | Virulence | - |
32 | hrpV | AAT96150.1 | 29140-29487 | 348 | - | Virulence | - |
33 | hrpT | AAT96151.1 | 29490-29693 | 204 | - | Virulence | - |
34 | hrcC | AAT96152.1 | 29690-31783 | 2094 | - | Virulence | - |
35 | hrpG | AAT96153.1 | 31785-32225 | 441 | - | Virulence | - |
36 | hrpF | AAT96154.1 | 32203-32427 | 225 | - | Virulence | - |
37 | hrpE | AAT96155.1 | 32511-33092 | 582 | - | Virulence | - |
38 | hrpD | AAT96156.1 | 33133-33663 | 531 | - | Virulence | - |
39 | hrcJ | AAT96157.1 | 33660-34466 | 807 | - | Virulence | - |
40 | hrpB | AAT96158.1 | 34476-34880 | 405 | - | Virulence | - |
41 | hrpZ | AAT96159.1 | 34877-35890 | 1014 | - | Virulence | - |
42 | hrpA | AAT96160.1 | 35942-36268 | 327 | - | Virulence | - |
43 | hrpS | AAT96161.1 | 36363-37274 | 912 | - | Virulence | - |
44 | hrpR | AAT96162.1 | 37321-38256 | 936 | - | Virulence | - |
45 | unnamed | AAT96163.1 | 39339-40868 | 1530 | - | Not tested | - |
46 | avrE | AAT96164.1 | 41089-46311 | 5223 | + | Not tested | - |
47 | avrF | AAT96165.1 | 46369-46758 | 390 | - | Not tested | - |
48 | unnamed | AAT96166.1 | 46837-49317 | 2481 | - | Virulence | - |
49 | unnamed | AAT96167.1 | 49314-49811 | 498 | - | Virulence | - |
50 | hrpW | AAT96168.1 | 50004-51335 | 1332 | + | Not tested | - |
51 | unnamed | AAT96169.1 | 51403-52839 | 1437 | - | Virulence | - |
52 | unnamed | AAT96170.1 | 53145-54149 | 1005 | + | Not tested | - |
53 | unnamed | AAT96171.1 | 54860-55540 | 681 | - | Not tested | - |
54 | unnamed | AAT96172.1 | 55581-55874 | 294 | + | Not tested | - |
55 | unnamed | AAT96173.1 | 55956-56165 | 210 | + | Not tested | - |
56 | unnamed | AAT96174.1 | 56174-57091 | 918 | - | Not tested | - |
57 | unnamed | AAT96175.1 | 57151-58029 | 879 | + | Not tested | - |
58 | unnamed | AAT96176.1 | 58141-59442 | 1302 | + | Not tested | - |
59 | unnamed | AAT96177.1 | 59461-60309 | 849 | + | Not tested | - |
60 | unnamed | AAT96178.1 | 60306-60908 | 603 | + | Not tested | - |
NC_014500 (Dickeya dadantii 3937): 2.6 Mb NC_013592 (Dickeya dadantii Ech586): 2.1 Mb NC_012912 (Dickeya zeae Ech1591): 2.2 Mb NC_021500 (Enterobacter sp. R4-368): 2.9 Mb NC_013971 (Erwinia amylovora ATCC 49946): 1.1 Mb NC_013961 (Erwinia amylovora CFBP1430): 1.0 Mb NC_007645 (Hahella chejuensis KCTC 2396): 3.4 Mb NC_014323 (Herbaspirillum seropedicae SmR1): 0.9 Mb NC_015276 (Marinomonas mediterranea MMB-1): 1.2 Mb NC_004547 (Pectobacterium atrosepticum SCRI1043): 2.4 Mb NC_012917 (Pectobacterium carotovorum PC1): 2.5 Mb NC_018525 (Pectobacterium carotovorum PCC21): 2.6 Mb NC_015379 (Pseudomonas brassicacearum NFM421): 6.5 Mb NC_017911 (Pseudomonas fluorescens A506): 0.8 Mb NC_016830 (Pseudomonas fluorescens F113): 6.5 Mb NC_012660 (Pseudomonas fluorescens SBW25): 0.8 Mb NC_009439 (Pseudomonas mendocina ymp): 0.0 Mb NC_020209 (Pseudomonas poae RE*1-1-14): 0.0 Mb NC_010322 (Pseudomonas putida GB-1): 1.0 Mb NC_005773 (Pseudomonas syringae 1448A): 1.5 Mb NC_007005 (Pseudomonas syringae B728a): 1.3 Mb NC_004578 (Pseudomonas syringae DC3000): 1.5 Mb NC_021741 (Serratia liquefaciens ATCC 27592): 1.0 Mb NC_020064 (Serratia marcescens FGI94): 4.1 Mb NC_009832 (Serratia proteamaculans 568): 1.2 Mb NC_022268 (Serratia sp. ATCC 39006): 3.2 Mb |