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Publication : - Araki,H., Tian,D., Goss,E.M., Jakob,K., Halldorsdottir,S.S., Kreitman,M. and Bergelson,J., "Presence/absence polymorphism for alternative pathogenicity islands in Pseudomonas viridiflava, a pathogen of Arabidopsis", Proc. Natl. Acad. Sci. U.S.A. 103 (15), 5887-5892 (2006) PUBMED 16581904. - Araki,H., Tian,D., Goss,E.M., Jakob,K., Kreitman,M. and Bergelson,J., "Direct Submission", Submitted (12-APR-2004) Ecology and Evolution, University of Chicago, 1101 E. 57th St., Chicago, IL 60637, USA. |
No | Name | GenBank Accn | Position | Size(bp) | Strand | Virulence/Resistance | Description |
1 | unnamed | AAT96288.1 | 1-721 | 721 | + | Not tested | - |
2 | unnamed | AAT96289.1 | 763-1407 | 645 | - | Not tested | - |
3 | unnamed | AAT96290.1 | 1487-2662 | 1176 | - | Not tested | - |
4 | unnamed | AAT96291.1 | 2668-3267 | 600 | - | Not tested | - |
5 | unnamed | AAT96292.1 | 3158-4204 | 1047 | + | Not tested | - |
6 | aldH | AAT96293.1 | 4480-6063 | 1584 | + | Not tested | - |
7 | unnamed | AAT96294.1 | 6182-6763 | 582 | - | Not tested | - |
8 | hrpL | AAT96295.1 | 6763-7470 | 708 | - | Virulence | - |
9 | hrpJ | AAT96296.1 | 7579-8688 | 1110 | + | Virulence | - |
10 | hrcV | AAT96297.1 | 8685-10775 | 2091 | + | Virulence | - |
11 | hrpQ | AAT96298.1 | 10786-11715 | 930 | + | Virulence | - |
12 | hrcN | AAT96299.1 | 11715-13070 | 1356 | + | Virulence | - |
13 | hrpO | AAT96300.1 | 13057-13521 | 465 | + | Virulence | - |
14 | unnamed | AAT96301.1 | 13518-14078 | 561 | + | Virulence | - |
15 | unnamed | AAT96302.1 | 14080-15144 | 1065 | + | Virulence | - |
16 | hrcR | AAT96303.1 | 15213-15794 | 582 | + | Virulence | - |
17 | hrcS | AAT96304.1 | 15809-16069 | 261 | + | Virulence | - |
18 | hrcT | AAT96305.1 | 16071-16868 | 798 | + | Virulence | - |
19 | hrcU | AAT96306.1 | 16894-17979 | 1086 | + | Virulence | - |
20 | avrE | AAT96307.1 | 18094-23253 | 5160 | + | Not tested | - |
21 | unnamed | AAT96308.1 | 23350-23967 | 618 | + | Not tested | - |
22 | unnamed | AAT96309.1 | 24258-24584 | 327 | + | Not tested | - |
23 | unnamed | AAT96310.1 | 24728-25084 | 357 | - | Not tested | - |
24 | hrpW | AAT96311.1 | 25086-26780 | 1695 | - | Virulence | - |
25 | avrF | AAT96312.1 | 26921-27319 | 399 | - | Not tested | - |
26 | hrpV | AAT96313.1 | 27420-27773 | 354 | - | Virulence | - |
27 | hrpT | AAT96314.1 | 27766-27957 | 192 | - | Virulence | - |
28 | hrcC | AAT96315.1 | 28074-30335 | 2262 | - | Virulence | - |
29 | hrpG | AAT96316.1 | 30082-30612 | 531 | - | Virulence | - |
30 | hrpF | AAT96317.1 | 30479-30895 | 417 | - | Virulence | - |
31 | hrpE | AAT96318.1 | 30771-31364 | 594 | - | Virulence | - |
32 | hrpD | AAT96319.1 | 31315-31932 | 618 | - | Virulence | - |
33 | hrcJ | AAT96320.1 | 31929-32720 | 792 | - | Virulence | - |
34 | hrpB | AAT96321.1 | 32730-33089 | 360 | - | Virulence | - |
35 | hrpZ | AAT96322.1 | 33124-34074 | 951 | - | Virulence | - |
36 | hrpA | AAT96323.1 | 34144-34350 | 207 | - | Virulence | - |
37 | unnamed | AAT96324.1 | 34466-35404 | 939 | - | Virulence | - |
38 | unnamed | AAT96325.1 | 35564-35956 | 393 | - | Not tested | - |
39 | unnamed | AAT96326.1 | 36409-37584 | 1176 | + | Not tested | - |
40 | tliF | AAT96327.1 | 37592-38941 | 1350 | - | Not tested | - |
NC_014500 (Dickeya dadantii 3937): 2.6 Mb NC_013592 (Dickeya dadantii Ech586): 2.1 Mb NC_012912 (Dickeya zeae Ech1591): 2.2 Mb NC_021500 (Enterobacter sp. R4-368): 2.9 Mb NC_007645 (Hahella chejuensis KCTC 2396): 3.4 Mb NC_014323 (Herbaspirillum seropedicae SmR1): 0.9 Mb NC_015276 (Marinomonas mediterranea MMB-1): 1.2 Mb NC_004547 (Pectobacterium atrosepticum SCRI1043): 2.4 Mb NC_012917 (Pectobacterium carotovorum PC1): 2.5 Mb NC_018525 (Pectobacterium carotovorum PCC21): 2.6 Mb NC_015379 (Pseudomonas brassicacearum NFM421): 6.5 Mb NC_017911 (Pseudomonas fluorescens A506): 0.8 Mb NC_016830 (Pseudomonas fluorescens F113): 6.5 Mb NC_012660 (Pseudomonas fluorescens SBW25): 0.8 Mb NC_009439 (Pseudomonas mendocina ymp): 0.0 Mb NC_020209 (Pseudomonas poae RE*1-1-14): 0.0 Mb NC_005773 (Pseudomonas syringae 1448A): 1.5 Mb NC_007005 (Pseudomonas syringae B728a): 1.3 Mb NC_004578 (Pseudomonas syringae DC3000): 1.5 Mb NC_020064 (Serratia marcescens FGI94): 4.1 Mb NC_022268 (Serratia sp. ATCC 39006): 3.2 Mb |