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No | Name | Start | End | Size(bp) | Insertion Site | Function |
1 | SPI-5 | 1175321 | 1184389 | 9069 | tRNA-serT | Effector proteins for SPI-1 and SPI-2 (SopB, SigD, PipB) |
2 | SPI-2 | 1461740 | 1501810 | 40071 | tRNA-valV | Type III secretion system, required for systemic infection and intracellular pathogenesis by facilitating replication of intracellular bacteria within membrane-bound Salmonella-containing vacuoles |
3 | SPI-1 | 3005842 | 3050120 | 44279 | fhlA/mutS | Type III secretion system, invasion into epithelial cells, apoptosis (InvA, OrgA, SptP, SipA, SipB, SipC, SipD, SopE, prgH) |
4 | SPI-3 | 3948576 | 3965191 | 16616 | tRNA-selC | Invasion, survival in monocytes, Mg2+ uptake (MgtC, B, MarT, MisL) |
5 | SPI-4 | 4477849 | 4501259 | 23411 | ssb/soxSR | Type I secretion system, putative toxin secretion, apoptosis, required for intracellular survival in macrophages |
No | Start | End | Size(bp) | No. of ORFs | G+C content |
No. of homologs of PAI-virulence genes | PAIs homologous to this region |
1 | 294828 | 336645 | 41818 | 39 | 54.37 % | 6 | tcd island (Photorhabdus luminescens W14) SPI-6 (Salmonella enterica subsp. enterica serovar Typhi CT18) |
2 | 342209 | 351350 | 9142 | 10 | 47.64 % | 3 | SPI-6 (Salmonella enterica subsp. enterica serovar Typhi CT18) |
3 | 1175322 | 1196318 | 20997 | 23 | 50.54 % | 10 | tcd island (Photorhabdus luminescens W14) SPI-5 (Salmonella enterica 2229) SPI-5 (Salmonella typhimurium LT2) SPI-5 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-5 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) |
4 | 1326083 | 1334389 | 8307 | 12 | 40.94 % | 2 | SPI-11 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) |
5 | 1459926 | 1501810 | 41885 | 47 | 47.53 % | 45 | LEE (Citrobacter rodentium DBS100) LEE (Escherichia coli E2348/69) LEE (Escherichia coli ATCC43895) LEE (Escherichia coli 71074) LEE (Escherichia coli 83/39) LEE (Escherichia coli RW1374) LEE (Escherichia coli RDEC-1) LEE (Escherichia coli O157:H7 EDL933) LEE (Escherichia coli O157:H7 Sakai) LEE (Escherichia coli 12009) LEE (Escherichia coli 11368) LEE (Escherichia coli 11128) LEE II (Escherichia coli 413/89-1) SPI-2 (Salmonella enterica LT2) SPI-2 (Salmonella enterica SL1344) SPI-2 (Salmonella typhimurium LT2) SPI-2 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-2 (Salmonella enterica subsp. enterica serovar Typhi Ty2) SPI-2 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) SESS LEE (Salmonella enterica S1296) SESS LEE (Salmonella enterica S1635) Not named (Yersinia pestis CO92) |
6 | 2343920 | 2353662 | 9743 | 12 | 60.47 % | 1 | PAGI-2(C) (Pseudomonas aeruginosa C) SPI-12 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) |
7 | 2910681 | 2925763 | 15083 | 10 | 52.82 % | 5 | PAI III 536 (Escherichia coli 536) |
8 | 3005842 | 3050120 | 44279 | 49 | 45.36 % | 38 | LIM (Escherichia coli O157:H7 Sakai) TTSS locus (Photorhabdus luminescens W14) SPI-1 (Salmonella typhimurium LT2) SPI-1 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-1 (Salmonella enterica subsp. enterica serovar Typhi Ty2) SPI-1 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) centisome 63 pathogenicity island (Salmonella enterica SL1344) SSR-1 (Sodalis glossinidius ) SSR-2 (Sodalis glossinidius ) |
9 | 4476286 | 4504293 | 28008 | 10 | 44.83 % | 9 | SPI-4 (Salmonella enterica LT2) SPI-4 (Salmonella enterica ST4/74) SPI-4 (Salmonella typhimurium LT2) SPI-4 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-4 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) |
No | Start | End | Size(bp) | No. of ORFs | G+C content |
No. of homologs of PAI-virulence genes | PAIs homologous to this region |
1 | 2627589 | 2650801 | 23213 | 5 | 57.02 % | 5 | CS54 island (Salmonella enterica ATCC14028) |
2 | 3948576 | 3966594 | 18019 | 14 | 47.72 % | 10 | SPI-3 (Salmonella enterica 14028s) SPI-3 (Salmonella typhimurium LT2) SPI-3 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-3 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) |
No | Start | End | Size(bp) | No. of ORFs | G+C content |
No. of homologs of REI-resistance genes | REIs homologous to this region |
1 | 2082173 | 2099685 | 17513 | 19 | 50.43 % | 1 | PAI IV 536 (Escherichia coli 536) PAI IV APEC-O1 (Escherichia coli APEC O1) |