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No | Name | Start | End | Size(bp) | Insertion Site | Function |
1 | PAI I CFT073 | 3406225 | 3450866 | 44642 | tRNA-pheV | Alpha-hemolysin, P-fimbriae, aerobactin |
2 | PAI II CFT073 | 4913367 | 4971660 | 58294 | tRNA-pheU | P-fimbriae, iron-regulated genes |
No | Start | End | Size(bp) | No. of ORFs | G+C content |
No. of homologs of PAI-virulence genes | PAIs homologous to this region |
1 | 240329 | 288201 | 47873 | 71 | 49.66 % | 16 | PAI I 536 (Escherichia coli 536) PAI I APEC-O1 (Escherichia coli APEC O1) PAI I APEC-O1 (Escherichia coli APEC O1) LEE (Escherichia coli RW1374) LEE (Escherichia coli 12009) AGI-3 (Escherichia coli BEN2908) PAI II 536 (Escherichia coli 536) TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) PAI III 536 (Escherichia coli 536) PAI V 536 (Escherichia coli 536) PAI II CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) PAI-I AL862 (Escherichia coli AL862) PAI IV APEC-O1 (Escherichia coli APEC O1) tcd island (Photorhabdus luminescens W14) SHI-1 (Shigella flexneri YSH6000T) SHI-1 (Shigella flexneri 2a str. 301) SHI-1 (Shigella flexneri 2a str. 2457T) SRL (Shigella flexneri YSH6000) |
2 | 299622 | 310638 | 11017 | 13 | 45.75 % | 5 | PAI V 536 (Escherichia coli 536) PAI-I AL862 (Escherichia coli AL862) PAI-I AL862 (Escherichia coli AL862) |
3 | 370224 | 378731 | 8508 | 10 | 43.63 % | 2 | Not named (Escherichia coli Ec222) PAI III 536 (Escherichia coli 536) |
4 | 1127702 | 1135961 | 8260 | 8 | 39.92 % | 2 | TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) |
5 | 1183572 | 1241149 | 57578 | 64 | 48.92 % | 34 | PAI I 536 (Escherichia coli 536) PAI I APEC-O1 (Escherichia coli APEC O1) PAI I APEC-O1 (Escherichia coli APEC O1) LEE (Escherichia coli 71074) LEE (Escherichia coli 84/110-1) LEE (Escherichia coli RW1374) LEE (Escherichia coli O157:H7 Sakai) LEE (Escherichia coli 12009) AGI-3 (Escherichia coli BEN2908) PAI II 536 (Escherichia coli 536) TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) PAI III 536 (Escherichia coli 536) PAI V 536 (Escherichia coli 536) PAI II CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) PAI-I AL862 (Escherichia coli AL862) KpGI-5 (Klebsiella pneumoniae KR116) SHI-1 (Shigella flexneri YSH6000T) SHI-1 (Shigella flexneri 2a str. 301) SHI-1 (Shigella flexneri 2a str. 2457T) SRL (Shigella flexneri YSH6000) |
6 | 2216841 | 2264257 | 47417 | 38 | 53.93 % | 9 | PAI IV 536 (Escherichia coli 536) PAI IV APEC-O1 (Escherichia coli APEC O1) HPI (Yersinia enterocolitica WA 314) HPI (Yersinia pseudotuberculosis IP32637) HPI (Yersinia pestis KIM6+) HPI (Yersinia pestis 6/69) HPI (Yersinia pestis CO92) HPI (Yersinia pestis KIM) HPI (Yersinia pestis biovar Medievalis str. 91001) HPI (Yersinia pseudotuberculosis IP32953) HPI (Yersinia enterocolitica 8081) |
7 | 2331944 | 2343014 | 11071 | 14 | 49.63 % | 7 | LEE (Escherichia coli RW1374) PAI-I AL862 (Escherichia coli AL862) PAI IV APEC-O1 (Escherichia coli APEC O1) SRL (Shigella flexneri YSH6000) |
8 | 2349503 | 2367447 | 17945 | 20 | 52.11 % | 6 | PAI I 536 (Escherichia coli 536) PAI I APEC-O1 (Escherichia coli APEC O1) PAI I APEC-O1 (Escherichia coli APEC O1) LEE (Escherichia coli RW1374) LEE (Escherichia coli 12009) AGI-3 (Escherichia coli BEN2908) PAI II 536 (Escherichia coli 536) TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) PAI III 536 (Escherichia coli 536) PAI V 536 (Escherichia coli 536) PAI II CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) PAI-I AL862 (Escherichia coli AL862) PAI IV APEC-O1 (Escherichia coli APEC O1) SHI-1 (Shigella flexneri YSH6000T) SHI-1 (Shigella flexneri 2a str. 301) SHI-1 (Shigella flexneri 2a str. 2457T) SRL (Shigella flexneri YSH6000) |
9 | 3406225 | 3552913 | 146689 | 165 | 47.82 % | 77 | PAI I 536 (Escherichia coli 536) PAI I APEC-O1 (Escherichia coli APEC O1) PAI I APEC-O1 (Escherichia coli APEC O1) LEE (Escherichia coli 84/110-1) LEE (Escherichia coli RW1374) LEE (Escherichia coli 12009) AGI-3 (Escherichia coli BEN2908) PAI II 536 (Escherichia coli 536) TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) OI-122 (Escherichia coli O157:H7 EDL933) PAI III 536 (Escherichia coli 536) PAI V 536 (Escherichia coli 536) PAI I CFT073 (Escherichia coli CFT073) PAI I CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) PAI-I AL862 (Escherichia coli AL862) Not named (Escherichia coli UMN026) SHI-1 (Shigella flexneri YSH6000T) SHI-1 (Shigella flexneri 2a str. 301) SHI-1 (Shigella flexneri 2a str. 2457T) SHI-2 (Shigella flexneri M90T) SHI-2 (Shigella flexneri 2a str. 301) SHI-2 (Shigella flexneri 2a str. 2457T) SHI-3 (Shigella boydii 0-1392) SRL (Shigella flexneri YSH6000) |
10 | 4274308 | 4290240 | 15933 | 14 | 45.15 % | 2 | AGI-3 (Escherichia coli BEN2908) |
11 | 4329644 | 4344787 | 15144 | 26 | 47.01 % | 14 | PAI I 536 (Escherichia coli 536) PAI I APEC-O1 (Escherichia coli APEC O1) PAI I APEC-O1 (Escherichia coli APEC O1) LEE (Escherichia coli 84/110-1) LEE (Escherichia coli RW1374) LEE (Escherichia coli 12009) AGI-3 (Escherichia coli BEN2908) PAI II 536 (Escherichia coli 536) TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) PAI III 536 (Escherichia coli 536) PAI V 536 (Escherichia coli 536) PAI II CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) PAI-I AL862 (Escherichia coli AL862) SHI-1 (Shigella flexneri YSH6000T) SHI-1 (Shigella flexneri 2a str. 301) SHI-1 (Shigella flexneri 2a str. 2457T) SRL (Shigella flexneri YSH6000) |
12 | 4910097 | 4971660 | 61564 | 80 | 47.32 % | 33 | PAI I 536 (Escherichia coli 536) PAI I APEC-O1 (Escherichia coli APEC O1) PAI I APEC-O1 (Escherichia coli APEC O1) LEE (Escherichia coli 84/110-1) LEE (Escherichia coli RW1374) LEE (Escherichia coli 12009) LEE (Escherichia coli 11128) AGI-3 (Escherichia coli BEN2908) PAI II 536 (Escherichia coli 536) TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) OI-122 (Escherichia coli O157:H7 EDL933) PAI III 536 (Escherichia coli 536) PAI V 536 (Escherichia coli 536) PAI I CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) PAI-I AL862 (Escherichia coli AL862) Not named (Escherichia coli UMN026) SPI-7 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-7 (Salmonella enterica subsp. enterica serovar Typhi Ty2) SHI-1 (Shigella flexneri YSH6000T) SHI-1 (Shigella flexneri 2a str. 301) SHI-1 (Shigella flexneri 2a str. 2457T) SRL (Shigella flexneri YSH6000) |
No | Start | End | Size(bp) | No. of ORFs | G+C content |
No. of homologs of PAI-virulence genes | PAIs homologous to this region |
1 | 1476306 | 1485684 | 9379 | 10 | 52.19 % | 2 | PAI I CFT073 (Escherichia coli CFT073) |
2 | 2571169 | 2585152 | 13984 | 19 | 52.81 % | 1 | Not named (Cronobacter sakazakii ATCC BAA-894) PAGI-2(C) (Pseudomonas aeruginosa C) SPI-12 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) |