Genome Information

PAthogenisity Island DataBase (PAI DB)

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Genome Information

• General information

Accession:

Strain :

Shigella sonnei

Type :

Size :

G+C content :

[Note]

• PAIs (PAI reported to be located in this genome)

• cPAIs (PAI-like region overlapping genomic islands (candidate PAI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	245365	280951	35587	37	51.73 %	4	AGI-1 (Escherichia coli BEN2908) PAI II APEC-O1 (Escherichia coli APEC O1) tcd island (Photorhabdus luminescens W14)
2	1262154	1275471	13318	15	49.59 %	1	TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) PAI I CFT073 (Escherichia coli CFT073) PAI I CFT073 (Escherichia coli CFT073) SHI-2 (Shigella flexneri M90T) SHI-O (Shigella flexneri Y53) Not named (Shigella flexneri )
3	1386695	1397767	11073	15	49.15 %	1	TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) PAI I CFT073 (Escherichia coli CFT073) PAI I CFT073 (Escherichia coli CFT073) SHI-2 (Shigella flexneri M90T) SHI-O (Shigella flexneri Y53) Not named (Shigella flexneri )
4	2808774	2832193	23420	24	49.5 %	1	AGI-3 (Escherichia coli BEN2908) TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) PAI I CFT073 (Escherichia coli CFT073) PAI I CFT073 (Escherichia coli CFT073) SHI-2 (Shigella flexneri M90T)
5	3159793	3168752	8960	10	39.24 %	1	LIM (Escherichia coli O157:H7 Sakai)
6	3751714	3782621	30908	33	49.21 %	7	PAI I APEC-O1 (Escherichia coli APEC O1) PAI I APEC-O1 (Escherichia coli APEC O1) AGI-3 (Escherichia coli BEN2908) PAI I CFT073 (Escherichia coli CFT073) PAI I CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) Not named (Escherichia coli UMN026) SHI-1 (Shigella flexneri 2a str. 301) SHI-1 (Shigella flexneri 2a str. 2457T) SHI-2 (Shigella flexneri M90T) SHI-2 (Shigella flexneri 2a str. 301) SHI-2 (Shigella flexneri 2a str. 2457T) SHI-3 (Shigella boydii 0-1392)
7	4730804	4747922	17119	18	51.55 %	7	SHI-2 (Shigella flexneri 2a str. 301) SRL (Shigella flexneri YSH6000)

• nPAIs (PAI-like region not overlapping genomic islands (non-probable PAI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	3389097	3403233	14137	9	46.11 %	3	SHI-1 (Shigella flexneri 2a str. 301) SHI-1 (Shigella flexneri 2a str. 2457T)
2	3919880	3930912	11033	12	48.73 %	1	AGI-3 (Escherichia coli BEN2908) SHI-2 (Shigella flexneri 2a str. 301) SHI-2 (Shigella flexneri 2a str. 2457T) YAPI (Yersinia enterocolitica 8081)

• REIs (REI reported to be located in this genome)

• cREIs (REI-like region overlapping genomic islands (candidate REI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of REI-resistance genes	REIs homologous to this region
1	2127532	2153767	26236	21	48.36 %	1	PAI IV 536 (Escherichia coli 536) PAI IV APEC-O1 (Escherichia coli APEC O1)
2	4110458	4123374	12917	10	46.55 %	1	Tn2411 (Escherichia coli 42)

• nREIs (REI-like region not overlapping genomic islands (non-probable REI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of REI-resistance genes	REIs homologous to this region
1	4761895	4774382	12488	13	54.26 %	1	tcd island (Photorhabdus luminescens W14)