Genome Information

PAthogenisity Island DataBase (PAI DB)

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Genome Information

• General information

Accession:

Strain :

Escherichia coli

Type :

Size :

G+C content :

[Note]

• PAIs (PAI reported to be located in this genome)

No	Name	Start	End	Size(bp)	Insertion Site	Function
1	PAI II APEC-O1	241877	271619	29743	tRNA-Asp	-
2	PAI III APEC-O1	295044	314346	19303	tRNA-Thr	vat
3	PAI IV APEC-O1	2090557	2168238	77682	tRNA-Asn	Yersiniabactic operon
4	PAI I APEC-O1	3305017	3388621	83605	tRNA-Phe	ireA, tia, pap operon
5	Not named	4312693	4327992	15300	metE and ysgA genes of the E. coli K12 genome.	tkt1

• cPAIs (PAI-like region overlapping genomic islands (candidate PAI))

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No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	237543	271625	34083	30	50.82 %	5	AGI-1 (Escherichia coli BEN2908) PAI II APEC-O1 (Escherichia coli APEC O1) tcd island (Photorhabdus luminescens W14)
2	295044	315796	20753	17	40.75 %	2	Not named (Escherichia coli Ec222) PAI III APEC-O1 (Escherichia coli APEC O1)
3	2089479	2168238	78760	62	52.07 %	20	LEE (Escherichia coli RW1374) TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) PAI IV 536 (Escherichia coli 536) PAI II CFT073 (Escherichia coli CFT073) PAI-I AL862 (Escherichia coli AL862) PAI IV APEC-O1 (Escherichia coli APEC O1) HPI (Yersinia enterocolitica WA 314) HPI (Yersinia pestis 6/69) HPI (Yersinia pestis CO92) HPI (Yersinia pestis KIM) HPI (Yersinia pestis biovar Medievalis str. 91001) HPI (Yersinia pseudotuberculosis IP32953) HPI (Yersinia enterocolitica 8081)
4	3305017	3414778	109762	96	47.63 %	52	PAI I 536 (Escherichia coli 536) PAI I APEC-O1 (Escherichia coli APEC O1) PAI I APEC-O1 (Escherichia coli APEC O1) LEE (Escherichia coli 84/110-1) LEE (Escherichia coli RW1374) LEE (Escherichia coli 12009) AGI-3 (Escherichia coli BEN2908) PAI II 536 (Escherichia coli 536) TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) PAI III 536 (Escherichia coli 536) PAI V 536 (Escherichia coli 536) PAI I CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) PAI-I AL862 (Escherichia coli AL862) Not named (Escherichia coli UMN026) SHI-1 (Shigella flexneri YSH6000T) SHI-1 (Shigella flexneri 2a str. 301) SHI-1 (Shigella flexneri 2a str. 2457T) SRL (Shigella flexneri YSH6000)
5	4697611	4719787	22177	18	47.17 %	12	PAI I 536 (Escherichia coli 536) PAI I APEC-O1 (Escherichia coli APEC O1) PAI I APEC-O1 (Escherichia coli APEC O1) PAI II 536 (Escherichia coli 536) PAI III 536 (Escherichia coli 536) PAI II CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073)
6	4754911	4770462	15552	18	47.84 %	2	AbaR1 (Acinetobacter baumannii AYE) AGI-3 (Escherichia coli BEN2908) PAI I CFT073 (Escherichia coli CFT073) PAI-I AL862 (Escherichia coli AL862) Tn2411 (Escherichia coli 42) Not named (Escherichia coli UMN026) SPI-7 (Salmonella enterica subsp. enterica serovar Typhi CT18) SHI-2 (Shigella flexneri M90T) SHI-2 (Shigella flexneri 2a str. 301) SHI-2 (Shigella flexneri 2a str. 2457T)
7	4938358	4956148	17791	13	45.47 %	2	GimA (Escherichia coli RS218)

• nPAIs (PAI-like region not overlapping genomic islands (non-probable PAI))

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No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	1250150	1259633	9484	9	52.18 %	2	PAI I CFT073 (Escherichia coli CFT073)
2	2393372	2407214	13843	14	52.81 %	1	Not named (Cronobacter sakazakii ATCC BAA-894) PAGI-2(C) (Pseudomonas aeruginosa C) SPI-12 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67)

• REIs (REI reported to be located in this genome)

• cREIs (REI-like region overlapping genomic islands (candidate REI))

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• nREIs (REI-like region not overlapping genomic islands (non-probable REI))

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