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No | Start | End | Size(bp) | No. of ORFs | G+C content |
No. of homologs of PAI-virulence genes | PAIs homologous to this region |
1 | 294819 | 350828 | 56010 | 55 | 52.02 % | 9 | tcd island (Photorhabdus luminescens W14) SPI-6 (Salmonella enterica subsp. enterica serovar Typhi CT18) |
2 | 1131644 | 1152640 | 20997 | 23 | 50.55 % | 10 | tcd island (Photorhabdus luminescens W14) SPI-5 (Salmonella enterica 2229) SPI-5 (Salmonella typhimurium LT2) SPI-5 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-5 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) |
3 | 1282936 | 1291242 | 8307 | 9 | 40.95 % | 2 | SPI-11 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) |
4 | 1416778 | 1458662 | 41885 | 47 | 47.53 % | 45 | LEE (Citrobacter rodentium DBS100) LEE (Escherichia coli E2348/69) LEE (Escherichia coli ATCC43895) LEE (Escherichia coli 71074) LEE (Escherichia coli 83/39) LEE (Escherichia coli RW1374) LEE (Escherichia coli RDEC-1) LEE (Escherichia coli O157:H7 EDL933) LEE (Escherichia coli O157:H7 Sakai) LEE (Escherichia coli 12009) LEE (Escherichia coli 11368) LEE (Escherichia coli 11128) LEE II (Escherichia coli 413/89-1) SPI-2 (Salmonella enterica LT2) SPI-2 (Salmonella enterica SL1344) SPI-2 (Salmonella typhimurium LT2) SPI-2 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-2 (Salmonella enterica subsp. enterica serovar Typhi Ty2) SPI-2 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) SESS LEE (Salmonella enterica S1296) SESS LEE (Salmonella enterica S1635) Not named (Yersinia pestis CO92) |
5 | 2341636 | 2351378 | 9743 | 12 | 60.46 % | 1 | PAGI-2(C) (Pseudomonas aeruginosa C) SPI-12 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) |
6 | 2838768 | 2900242 | 61475 | 61 | 52.49 % | 1 | PAGI-6 (Pseudomonas aeruginosa PSE9) SPI-10 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-7 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-7 (Salmonella enterica subsp. enterica serovar Typhi Ty2) SPI-9 (Salmonella enterica subsp. enterica serovar Typhi CT18) |
7 | 2933257 | 2948345 | 15089 | 10 | 52.82 % | 5 | PAI III 536 (Escherichia coli 536) |
8 | 3028421 | 3072696 | 44276 | 49 | 45.36 % | 38 | LIM (Escherichia coli O157:H7 Sakai) TTSS locus (Photorhabdus luminescens W14) SPI-1 (Salmonella typhimurium LT2) SPI-1 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-1 (Salmonella enterica subsp. enterica serovar Typhi Ty2) SPI-1 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) centisome 63 pathogenicity island (Salmonella enterica SL1344) SSR-1 (Sodalis glossinidius ) SSR-2 (Sodalis glossinidius ) |
9 | 4497578 | 4525585 | 28008 | 10 | 44.83 % | 9 | SPI-4 (Salmonella enterica LT2) SPI-4 (Salmonella enterica ST4/74) SPI-4 (Salmonella typhimurium LT2) SPI-4 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-4 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) |
No | Start | End | Size(bp) | No. of ORFs | G+C content |
No. of homologs of PAI-virulence genes | PAIs homologous to this region |
1 | 2625306 | 2648517 | 23212 | 5 | 57.02 % | 5 | CS54 island (Salmonella enterica ATCC14028) |
2 | 3969890 | 3987908 | 18019 | 13 | 47.73 % | 8 | SPI-3 (Salmonella enterica 14028s) SPI-3 (Salmonella typhimurium LT2) SPI-3 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-3 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) |
No | Start | End | Size(bp) | No. of ORFs | G+C content |
No. of homologs of REI-resistance genes | REIs homologous to this region |
1 | 2089022 | 2097400 | 8379 | 11 | 52.26 % | 1 | PAI IV APEC-O1 (Escherichia coli APEC O1) |