Genome Information

PAthogenisity Island DataBase (PAI DB)

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Genome Information

• General information

Accession:

Strain :

Shigella sonnei

Type :

Size :

G+C content :

[Note]

• PAIs (PAI reported to be located in this genome)

• cPAIs (PAI-like region overlapping genomic islands (candidate PAI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	241615	275358	33744	32	51.66 %	5	AGI-1 (Escherichia coli BEN2908) PAI II APEC-O1 (Escherichia coli APEC O1) tcd island (Photorhabdus luminescens W14)
2	1371951	1382738	10788	19	48.54 %	1	AbaR1 (Acinetobacter baumannii AYE) AGI-3 (Escherichia coli BEN2908) TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) PAI I CFT073 (Escherichia coli CFT073) PAI I CFT073 (Escherichia coli CFT073) PAI-I AL862 (Escherichia coli AL862) Tn2411 (Escherichia coli 42) SPI-7 (Salmonella enterica subsp. enterica serovar Typhi CT18) SHI-2 (Shigella flexneri M90T) SHI-2 (Shigella flexneri 2a str. 301) SHI-2 (Shigella flexneri 2a str. 2457T) SHI-O (Shigella flexneri Y53) Not named (Shigella flexneri )
3	1987267	2007616	20350	28	50.11 %	1	AbaR1 (Acinetobacter baumannii AYE) AGI-3 (Escherichia coli BEN2908) PAI-I AL862 (Escherichia coli AL862) Tn2411 (Escherichia coli 42) SPI-7 (Salmonella enterica subsp. enterica serovar Typhi CT18) SHI-2 (Shigella flexneri M90T) SHI-2 (Shigella flexneri 2a str. 301) SHI-2 (Shigella flexneri 2a str. 2457T)
4	3292590	3302644	10055	15	40.74 %	1	LIM (Escherichia coli O157:H7 Sakai)
5	3419444	3441499	22056	24	47.49 %	4	TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) PAI I CFT073 (Escherichia coli CFT073) SHI-1 (Shigella flexneri 2a str. 301)
6	4030722	4067772	37051	49	49.13 %	7	AbaR1 (Acinetobacter baumannii AYE) AGI-3 (Escherichia coli BEN2908) PAI I CFT073 (Escherichia coli CFT073) PAI I CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) PAI-I AL862 (Escherichia coli AL862) Tn2411 (Escherichia coli 42) Not named (Escherichia coli UMN026) SPI-7 (Salmonella enterica subsp. enterica serovar Typhi CT18) SHI-2 (Shigella flexneri M90T) SHI-2 (Shigella flexneri 2a str. 301) SHI-2 (Shigella flexneri 2a str. 2457T) SHI-3 (Shigella boydii 0-1392) SHI-O (Shigella flexneri Y53)
7	4734115	4745276	11162	13	47.96 %	1	TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) PAI I CFT073 (Escherichia coli CFT073) PAI I CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) SHI-2 (Shigella flexneri M90T) SHI-O (Shigella flexneri Y53) Not named (Shigella flexneri )
8	4886940	4906145	19206	28	50.82 %	7	AbaR1 (Acinetobacter baumannii AYE) AGI-3 (Escherichia coli BEN2908) PAI-I AL862 (Escherichia coli AL862) Tn2411 (Escherichia coli 42) SPI-7 (Salmonella enterica subsp. enterica serovar Typhi CT18) SHI-2 (Shigella flexneri 2a str. 301) SHI-2 (Shigella flexneri 2a str. 2457T) SRL (Shigella flexneri YSH6000)

• nPAIs (PAI-like region not overlapping genomic islands (non-probable PAI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	535629	551571	15943	22	50.78 %	3	AbaR1 (Acinetobacter baumannii AYE) AGI-3 (Escherichia coli BEN2908) PAI-I AL862 (Escherichia coli AL862) Tn2411 (Escherichia coli 42) SPI-7 (Salmonella enterica subsp. enterica serovar Typhi CT18) SHI-2 (Shigella flexneri 2a str. 301) SHI-2 (Shigella flexneri 2a str. 2457T)

• REIs (REI reported to be located in this genome)

• cREIs (REI-like region overlapping genomic islands (candidate REI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of REI-resistance genes	REIs homologous to this region
1	2220054	2243880	23827	23	48.04 %	1	PAI IV 536 (Escherichia coli 536) PAI IV APEC-O1 (Escherichia coli APEC O1)
2	3946761	3957753	10993	15	47.86 %	3	AGI-3 (Escherichia coli BEN2908) SHI-2 (Shigella flexneri M90T) SHI-2 (Shigella flexneri 2a str. 301) SHI-2 (Shigella flexneri 2a str. 2457T) YAPI (Yersinia enterocolitica 8081)

• nREIs (REI-like region not overlapping genomic islands (non-probable REI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of REI-resistance genes	REIs homologous to this region
1	4926099	4938586	12488	14	54.29 %	1	tcd island (Photorhabdus luminescens W14)