PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Salmonella enterica Ty2 (NC_004631)
Location : 2620356 - 2687428 bp
Size : 67073 bp
GC content : 51.6 %
GC bias (=GCregion - GCgenome) : -0.45 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1NA NP_806267.1 2620356-2620763 408 + hypothetical protein-
2NA NP_806268.1 2621088-2621807 720 + outer membrane adhesin-
3NA NP_806269.1 2622770-2623387 618 - hypothetical protein-
4tinR NP_806270.1 2623527-2623982 456 - transcriptional regulator-
5tcfD NP_806271.1 2624115-2625194 1080 - fimbrial protein-
6tsaC NP_806272.1 2625217-2627904 2688 - outer membrane fimbrial usher protein-
7tcfB NP_806273.1 2628013-2628588 576 - fimbrial subunitVirulence
8tcfA NP_806274.1 2628639-2629349 711 - fimbrial protein-
9NA - 2630564-2630941 378 + --
10NA - 2631000-2631167 168 - --
11NA NP_806275.1 2631254-2631367 114 - hypothetical protein-
12sinR NP_806276.1 2631487-2632431 945 - LysR family transcriptional regulator-
13NA - 2632637-2632768 132 - --
14NA YP_006892445.1 2632909-2633169 261 - hypothetical protein-
15NA NP_806277.1 2633249-2634070 822 - hypothetical proteinVirulence
16safD NP_806278.1 2634478-2634948 471 - fimbrial structural subunit-
17safC NP_806279.1 2634970-2637480 2511 - outer-membrane fimbrial usher proteinVirulence
18safB NP_806280.1 2637504-2638244 741 - periplasmic fimbrial chaperone proteinVirulence
19safE - 2638319-2638817 499 - --
20safA NP_806281.1 2638950-2639444 495 - lipoprotein-
21NA - 2640200-2640904 705 - --
22NA NP_806282.1 2640957-2641262 306 + hypothetical protein-
23NA NP_806283.1 2641332-2641775 444 - hypothetical protein-
24NA NP_806284.1 2641777-2642037 261 - hypothetical protein-
25NA NP_806285.1 2642116-2644647 2532 - Rhs-family protein-
26NA NP_806286.1 2644743-2645036 294 - hypothetical protein-
27NA NP_806287.1 2645055-2645732 678 - hypothetical protein-
28NA NP_806288.1 2645735-2649799 4065 - Rhs-family protein-
29NA NP_806289.1 2649818-2650264 447 - hypothetical protein-
30NA NP_806290.1 2650288-2652477 2190 - Rhs-family protein-
31NA NP_806291.1 2652840-2652947 108 - hypothetical protein-
32NA NP_806292.1 2652955-2653392 438 - hypothetical protein-
33NA NP_806293.1 2653419-2653835 417 - hypothetical protein-
34NA NP_806294.1 2653963-2654424 462 - hypothetical protein-
35NA NP_806295.1 2654409-2654879 471 - hypothetical protein-
36NA NP_806296.1 2654922-2655689 768 - hypothetical protein-
37NA - 2655689-2659550 3862 - --
38NA NP_806297.1 2659787-2660281 495 - hypothetical protein-
39NA NP_806298.1 2660313-2661062 750 - hypothetical protein-
40NA NP_806299.1 2661067-2662368 1302 - hypothetical protein-
41NA NP_806300.1 2662365-2663708 1344 - hypothetical protein-
42NA NP_806301.1 2663712-2664248 537 - lipoprotein-
43NA NP_806302.1 2664315-2664800 486 - hypothetical proteinVirulence
44NA NP_806303.1 2665037-2665462 426 - hypothetical protein-
45NA NP_806304.1 2665434-2665835 402 - hypothetical protein-
46NA - 2665888-2667396 1509 - --
47NA NP_806305.1 2667420-2667962 543 - hypothetical proteinVirulence
48NA NP_806306.1 2668026-2668316 291 - hypothetical protein-
49NA NP_806307.1 2668319-2668417 99 - hypothetical protein-
50NA NP_806308.1 2668402-2671065 2664 - ClpB-like proteinVirulence
51NA NP_806310.1 2671433-2672335 903 + hypothetical protein-
52NA NP_806311.1 2672322-2673146 825 + hypothetical protein-
53NA NP_806312.1 2673143-2673637 495 + hypothetical protein-
54NA NP_806313.1 2673653-2675536 1884 + hypothetical proteinVirulence
55NA NP_806314.1 2675533-2676528 996 + hypothetical protein-
56NA - 2676539-2677593 1055 + --
57tRNA-Asp - 2677913-2677989 77 - tRNA-Asp-
58dnaQ NP_806317.1 2678123-2678854 732 - DNA polymerase III subunit epsilon-
59rnhA NP_806318.1 2678918-2679385 468 + ribonuclease H-
60NA NP_806319.1 2679382-2680104 723 - hypothetical protein-
61gloB NP_806320.1 2680139-2680894 756 + hydroxyacylglutathione hydrolase-
62mltD NP_806321.1 2680966-2682333 1368 + membrane-bound lytic murein transglycosylase D-
63yafE NP_806322.1 2682389-2683159 771 - methyltransferase-
64yafD NP_806323.2 2683237-2684037 801 - hypothetical protein-
65NA NP_806324.1 2684169-2685344 1176 - drug efflux protein-
66yafC NP_806325.1 2685449-2686363 915 + transcriptional regulator-
67dkgB NP_806326.1 2686384-2687187 804 - 2,5-diketo-D-gluconate reductase B-
68tRNA-Asp - 2687352-2687428 77 - tRNA-Asp-


tRNA-Asp tRNA-Asp PI: Sal.6.NC_003198_P1STY0352 STY0351 STY0350 tinR tcfD tsaC tcfB tcfA STY0344 STY0343 STY0342 sinR STY0339 STY0338 safD safC safB safE safA STY0329 STY0328 STY0327 STY0326 STY0324 STY0323 STY0322 STY0321 STY0320 STY0319 STY0318 STY0317 STY0316 STY0312 STY0314 STY0313 STY0311 STY0310 STY0308 STY0307 STY0306 STY0305 STY0304 STY0303 STY0302 STY0301 STY0300 STY0298 STY0297 STY0296 STY0295 STY0294 STY0292 STY0291 STY0290 STY0289 STY0288 -PI: Pho.1-dnaQ rnhA orf71 gloB mltD -

• PAIs homologous to this region

tcd island (Photorhabdus luminescens W14)
SPI-6 (Salmonella enterica subsp. enterica serovar Typhi CT18)