PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Salmonella enterica CFSAN001921 (NC_021814)
Location : 3230221 - 3272038 bp
Size : 41818 bp
GC content : 54.4 %
GC bias (=GCregion - GCgenome) : 2.19 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1NA YP_008256536.1 3230221-3234315 4095 - type IV secretion protein Rhs-
2NA YP_008256537.1 3234334-3234780 447 - hypothetical protein-
3NA YP_008256538.1 3234804-3236993 2190 - type VI secretion protein Vgr-
4NA YP_008256539.1 3237390-3237908 519 - SPI-6 associated protein-
5NA YP_008256540.1 3237935-3238321 387 - hypothetical protein-
6NA YP_008256541.1 3238348-3239136 789 - hypothetical protein-
7NA YP_008256542.1 3239136-3243005 3870 - membrane protein-
8NA YP_008256543.1 3243039-3243482 444 - Shiga toxin A subunit-
9NA YP_008256544.1 3243673-3244446 774 - membrane protein-
10NA YP_008256545.1 3244451-3245755 1305 - membrane protein-
11NA YP_008256546.1 3245752-3247095 1344 - type VI secretion protein-
12NA YP_008256547.1 3247099-3247635 537 - outer membrane lipoprotein-
13NA YP_008256548.1 3247702-3248187 486 - Hcp1 family type VI secretion system effectorVirulence
14NA YP_008256549.1 3248330-3248713 384 - hypothetical protein-
15NA YP_008256550.1 3248698-3249183 486 - hypothetical protein-
16NA YP_008256551.1 3249488-3249973 486 - Hcp1 family type VI secretion system effectorVirulence
17NA YP_008256552.1 3250859-3252367 1509 - EvpB family type VI secretion proteinVirulence
18NA YP_008256553.1 3252391-3252933 543 - type VI secretion proteinVirulence
19NA YP_008256554.1 3253033-3255672 2640 - protein disaggregation chaperoneVirulence
20NA YP_008256555.1 3256040-3256942 903 + hypothetical protein-
21NA YP_008256556.1 3256929-3257753 825 + hypothetical protein-
22NA YP_008256557.1 3257750-3258244 495 + cytoplasmic protein-
23NA YP_008256558.1 3258260-3260143 1884 + type VI secretion proteinVirulence
24NA YP_008256559.1 3260140-3261135 996 + SPI-6 associated protein-
25NA YP_008256560.1 3261146-3262201 1056 + hypothetical protein-
26tRNA-Asp - 3262523-3262599 77 - tRNA-Asp-
27NA YP_008256561.1 3262733-3263473 741 - DNA polymerase III subunit epsilon-
28NA YP_008256562.1 3263528-3263995 468 + ribonuclease H-
29NA YP_008256563.1 3263992-3264714 723 - hypothetical protein-
30NA YP_008256564.1 3264749-3265504 756 + hydroxyacylglutathione hydrolase-
31mltD YP_008256565.1 3265576-3266943 1368 + membrane protein-
32NA YP_008256566.1 3266999-3267769 771 - S-adenosyl-L-methionine (SAM)-dependent methyltransferase PhcB-
33NA YP_008256567.1 3267847-3268647 801 - hypothetical protein-
34NA YP_008256568.1 3268779-3269954 1176 - sugar MFS transporter-
35NA YP_008256569.1 3270059-3270973 915 + LysR family transcripitonal regulator-
36dkgB YP_008256570.1 3270994-3271797 804 - 2,5-diketo-D-gluconic acid reductase-
37tRNA-Asp - 3271962-3272038 77 - tRNA-Asp-


tRNA-Asp tRNA-Asp PI: Sal.6.NC_003198_P1STY0321 STY0320 STY0319 STY0317 STY0316 STY0310 STY0306 STY0305 STY0304 STY0303 STY0302 STY0302 STY0297 STY0294 STY0292 STY0291 STY0290 STY0289 STY0288 -PI: Pho.1-dnaQ rnhA orf71 gloB mltD -

• PAIs homologous to this region

tcd island (Photorhabdus luminescens W14)
SPI-6 (Salmonella enterica subsp. enterica serovar Typhi CT18)