Gene Information

Name : shf (CP0235)
Accession : NP_858368.1
Strain :
Genome accession: NC_004851
Putative virulence/resistance : Virulence
Product : carbohydrate transport protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG0726
EC number : -
Position : 191709 - 192551 bp
Length : 843 bp
Strand : +
Note : -

DNA sequence :
ATGTTAAACGAAGGGGGCATTTTGTTCAAAGCCAATCATGTTCCGGTATTAATGTATCATCATGTCAGTCATTGCCCCGG
ACTGGTTACACTTTCTCCCGTGACATTCCGGAAGCAAATAAAATGGTTGGCTGAAAACAACTGGAAAACACTGTCATCAG
ATGAACTGGAGTTTTTTTATCGGGGCGGAAAACTCCCCCGGAAAAGCGTTATGTTGACATTTGATGATGGATACCTTGAC
AACTGGTTTCAGGTATATCCTTTATTAAAAGAGTTTAATCTCAAAGCACATATTTTTTTAATTACCGGTTTTATTGGGAA
TGGTCCGGTTCGTCACTCTCCTGGAAAGGAATATTCTCATCGCGATTGCGAACATCAAATAGCGACAGGGAATGCTGATA
ATGTTATGCTTCGCTGGTCTGAAGTAAACGAAATGTTGCAATCTGGTCTGGTCGAATTTCATGTTCATACGCATACTCAT
ACACGCTGGGATAAAAAGTTCAGTTCACGAGAAGAACAGTGTAAACATCTTCGGCAGGACTTGTTGAGCGGGAGAGAATA
TTTGAAAGAAATGACAGGAAAATGCAGTAAACATTTGTGTTGGCCGGAAGGTTATTATAACAAGGATTATATTCAGGTCG
CTGAAGAACTTGGATTCTATTATTTATATACAACAGAAAGAAGAATGAATGCTCCTGCTAAAGGAACTACACGGATAGGA
AGAATAAGCACCAAAGAACGGGAAAGTTGCGCATGGCTGAAAAGACGACTTTTTTATTATACAACCCCGTTTTTTTCATC
GTTGCTGGCCTTTCATAAGGGGCCAAGATTACCGGATGATTAA

Protein sequence :
MLNEGGILFKANHVPVLMYHHVSHCPGLVTLSPVTFRKQIKWLAENNWKTLSSDELEFFYRGGKLPRKSVMLTFDDGYLD
NWFQVYPLLKEFNLKAHIFLITGFIGNGPVRHSPGKEYSHRDCEHQIATGNADNVMLRWSEVNEMLQSGLVEFHVHTHTH
TRWDKKFSSREEQCKHLRQDLLSGREYLKEMTGKCSKHLCWPEGYYNKDYIQVAEELGFYYLYTTERRMNAPAKGTTRIG
RISTKERESCAWLKRRLFYYTTPFFSSLLAFHKGPRLPDD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
shf AAL08449.1 putative protein Shf Not tested SRL Protein 6e-105 97
STY0338 NP_454909.1 conserved hypothetical protein Not tested SPI-6 Protein 9e-82 65

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
shf NP_858368.1 carbohydrate transport protein VFG1040 Protein 4e-105 97