Gene Information

Name : EcE24377A_F0046 (EcE24377A_F0046)
Accession : YP_001451414.1
Strain :
Genome accession: NC_009786
Putative virulence/resistance : Virulence
Product : polysaccharide deacetylase family protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG0726
EC number : -
Position : 38153 - 38974 bp
Length : 822 bp
Strand : -
Note : identified by match to protein family HMM PF01522

DNA sequence : 
TTGTTTAAAGCAAATCATGTTCCGGTATTAATGTATCATCATGTCAGCCATTGCCCAGGACTGGTTACACTTTCTCCCGA
AACATTCCGGAAACAAATGAAATGGTTGGCTGAAAACAACTGGAAAACACTGTCATCAGATGAACTGGAATTTTTTTATC
GGGGCGGAAAACTTCCCCGTAAAAGCGTTATGTTGACATTTGATGATGGATACCTTGACAACTGGTTTCAGGTATATCCT
TTATTAAACGAGTTTAATCTCAAGGCACATATTTTTTTAATTACAAGTTTTATTGGAAATGGTCCGGTTCGTCACTCTCC
TGGAAAGGAATATTCTCATCGCGATTGCGAACATCAAATAGCAACCGGGAATGCTGATAATGTTATGCTTCGCTGGTCTG
AAGTGAACGAAATGTTGCAATCTGGCCTGGTCGAATTTCATGTTCATACACATACTCATACACGTTGGGATAAAAAGTTC
ACTTCACGAGAAGAACAGTGTAAACATCTTCGGCAGGACTTATTGAGCGGGAGAGAATATTTAAAAAAAATGACAGGAAA
ATGCAGTAAACATTTGTGTTGGCCGGAAGGTTATTATAACAAGGATTATATTCAGATCGCTGAAGAACTTGGATTCCATT
ATTTATATACAACAGAAAGAAGAATGAATGCTCCTGCTAAAGGAACTACACGGATAGGAAGAATAAGCACCAAGGAACGG
GAAAATTGCGTATGGCTGAAAAGACGACTTTTTTATTATACAACACCGTTTTTTTCATCGTTGCTGGCCCTTCATAAGGG
GCCAAGATTACCGGATGACTAA

Protein sequence : 
MFKANHVPVLMYHHVSHCPGLVTLSPETFRKQMKWLAENNWKTLSSDELEFFYRGGKLPRKSVMLTFDDGYLDNWFQVYP
LLNEFNLKAHIFLITSFIGNGPVRHSPGKEYSHRDCEHQIATGNADNVMLRWSEVNEMLQSGLVEFHVHTHTHTRWDKKF
TSREEQCKHLRQDLLSGREYLKKMTGKCSKHLCWPEGYYNKDYIQIAEELGFHYLYTTERRMNAPAKGTTRIGRISTKER
ENCVWLKRRLFYYTTPFFSSLLALHKGPRLPDD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
shf AAL08449.1 putative protein Shf Not tested SRL Protein 8e-108 94
STY0338 NP_454909.1 conserved hypothetical protein Not tested SPI-6 Protein 5e-82 65

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcE24377A_F0046 YP_001451414.1 polysaccharide deacetylase family protein VFG1040 Protein 5e-108 94