Gene Information

Name : SbBS512_A0260 (SbBS512_A0260)
Accession : YP_001883272.1
Strain :
Genome accession: NC_010660
Putative virulence/resistance : Virulence
Product : polysaccharide deacetylase family protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG0726
EC number : -
Position : 174376 - 175197 bp
Length : 822 bp
Strand : +
Note : identified by match to protein family HMM PF01522

DNA sequence : 
TTGTTCAAAGCCAATCATGTTCCGGTATTAATGTATCATCATGTCAGTCATTGCCCCGGACTGGTTACACTTTCTCCCGT
GACATTCCGGAAGCAAATGAAATGGTTGGCTGAAAACAACTGGAAAACACTGTCATCAGATGAACTGGAGTTTTTTTATC
GGGGCGGAAAACTCCCCCGGAAAAGCGTTATGTTGACATTTGATGATGGATACCTTGACAACTGGTTTCAGGTATATCCT
TTATTGAAAGAGTTTAATCTCAAAGCACATATTTTTTTAATTACCGGTTTTATTGGGAATGGTCCGGTTCGTCACTCTCC
TGGAAAGGAATATTCTCATCGCGATTGCGAACATCAAATAGCGACAGGGAATGCTGATAATGTTATGCTTCGCTGGTCTG
AAGTAAACGAAATGTTGCAATCTGGTCTGGTCGAATTTCATGTTCATACGCATACTCATACACGCTGGGATAAAAAGTTC
AGTTCACGAGAAGAACAGTGTAAACATCTTCGGCAGGACTTGTTGAGCGGGAGAGAATATTTGAAAGAAATGACAGGAAA
ATGCAGTAAACATTTGTGTTGGCCGGAAGGTTATTATAACAAGGATTATATTCAGGTCGCTGAAGAACTTGGATTCTATT
ATTTATATACAACAGAAAGAAGAATGAATGCTCCTGCTAAAGGAACTACACGGATAGGAAGAATAAGCACCAAAGAACGG
GAAAGTTGCGCATGGCTGAAAAGACGACTTTTTTATTATACAACACCGTTTTTTTCATCGTTGCTGGCCTTTCATAAGGG
GCCAAGATTACCGGATGATTAA

Protein sequence : 
MFKANHVPVLMYHHVSHCPGLVTLSPVTFRKQMKWLAENNWKTLSSDELEFFYRGGKLPRKSVMLTFDDGYLDNWFQVYP
LLKEFNLKAHIFLITGFIGNGPVRHSPGKEYSHRDCEHQIATGNADNVMLRWSEVNEMLQSGLVEFHVHTHTHTRWDKKF
SSREEQCKHLRQDLLSGREYLKEMTGKCSKHLCWPEGYYNKDYIQVAEELGFYYLYTTERRMNAPAKGTTRIGRISTKER
ESCAWLKRRLFYYTTPFFSSLLAFHKGPRLPDD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
shf AAL08449.1 putative protein Shf Not tested SRL Protein 4e-105 97
STY0338 NP_454909.1 conserved hypothetical protein Not tested SPI-6 Protein 4e-82 65

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SbBS512_A0260 YP_001883272.1 polysaccharide deacetylase family protein VFG1040 Protein 2e-105 97