Gene Information

Name : NH8B_3701 (NH8B_3701)
Accession : YP_004848863.1
Strain : Pseudogulbenkiania sp. NH8B
Genome accession: NC_016002
Putative virulence/resistance : Virulence
Product : polysaccharide deacetylase
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG0726
EC number : -
Position : 3888122 - 3888943 bp
Length : 822 bp
Strand : -
Note : -

DNA sequence :
ATGAAACCGGCCCGCGCCGTACCGGTGCTGATGTACCACCACGTCAGCCCCAGCAAGGGCCTGGTGACGGTGTCGCCGGC
CACCTTCGAAGCGCAGATGCGCTGGCTGGCCGAGCACGGCTGGACCACCCTGAGCACCGGCGACTTCGCCGGCTTTCTCG
CCGGCCGCCCGGTGCCGGACAAGAGCGTGCTGGTCACCTTCGACGACGGCTACCTCGACAACTGGGTATACGCCCATCCC
GTGCTGGAACGCTTCGGCCAACGTGCCACGCTGTTCACCATCACCGGCTGGATTGGCGACGGCGCGGTGCGCCCGCACGC
CGCCAGCGGCCAGGCGCTGCCCGACACCCCCGACCACAAGGCCTGCAAGCGCGCGGTGGACGAGGGCAGGGCCGACACCG
TGATGATGCGCTGGAGCGAGATCGAGGCCGCCCGCGCCGCCGGTACCTTCGAATTCCACAGTCACACCCACAGCCATGCC
CGCTGGGACAAGCTGTGCGCCAGTGCCGCCGAGAAGCGCGACAGGTTGGCCGAAGACCTCGCCACCTCGCGCCGCACGCT
CACCGAACGGCTGGGCGGTGTCAGCGACCACCTGTGCTGGCCGCAGGGCTATTTCGACGACGATTATCTGGACGTGGCGC
GGGCGGCCGGGTTTCGCCATCTGTATACCGTCGACAAGCATATCAATACCGCCACGACCGACCCGCGACGGATCGGCCGC
ATCGTCACCAAGGAGGCCGATGACGGCTGGTTTGCCCGGCGTATGGCCATTTACCGTCGACCGTTGCTGGGCGGGCTCTA
CGTGCGTCTGCGGGGAAAGTGA

Protein sequence :
MKPARAVPVLMYHHVSPSKGLVTVSPATFEAQMRWLAEHGWTTLSTGDFAGFLAGRPVPDKSVLVTFDDGYLDNWVYAHP
VLERFGQRATLFTITGWIGDGAVRPHAASGQALPDTPDHKACKRAVDEGRADTVMMRWSEIEAARAAGTFEFHSHTHSHA
RWDKLCASAAEKRDRLAEDLATSRRTLTERLGGVSDHLCWPQGYFDDDYLDVARAAGFRHLYTVDKHINTATTDPRRIGR
IVTKEADDGWFARRMAIYRRPLLGGLYVRLRGK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0338 NP_454909.1 conserved hypothetical protein Not tested SPI-6 Protein 2e-51 45
shf AAL08449.1 putative protein Shf Not tested SRL Protein 7e-53 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NH8B_3701 YP_004848863.1 polysaccharide deacetylase VFG1040 Protein 4e-53 45