PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Escherichia coli LF82 (NC_011993)
Location : 232641 - 275935 bp
Size : 43295 bp
GC content : 49.8 %
GC bias (=GCregion - GCgenome) : -0.91 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1tRNA-Asp - 232641-232717 77 + tRNA-Asp-
2dkgB YP_002555166.1 232880-233683 804 + 2,5-diketo-D-gluconic acid reductase B-
3yafC YP_002555167.1 233680-234594 915 - HTH-type transcriptional regulator-
4yafD YP_002555168.1 234835-235635 801 + hypothetical protein-
5yafE YP_002555169.1 235713-236483 771 + hypothetical protein-
6mltD YP_002555170.1 236532-237890 1359 - Membrane-bound lytic murein transglycosylase D-
7gloB YP_002555171.1 237962-238717 756 - hydroxyacylglutathione hydrolase-
8yafS YP_002555172.1 238751-239473 723 + hypothetical protein-
9rnhA YP_002555173.1 239470-239937 468 - ribonuclease HI-
10dnaQ YP_002555174.1 240002-240733 732 + DNA polymerase III subunit epsilon-
11tRNA-Asp - 240866-240942 77 + tRNA-Asp-
12yafT YP_002555175.1 241272-242057 786 + lipoprotein yafT-
13NA YP_002555176.1 242397-242876 480 - hypothetical protein-
14NA YP_002555177.1 242894-244252 1359 - hypothetical protein-
15NA YP_002555178.1 244263-247751 3489 - hypothetical protein-
16NA YP_002555179.1 247807-249249 1443 - hypothetical protein-
17NA YP_002555180.1 249254-249997 744 - hypothetical protein-
18NA YP_002555181.1 249994-252756 2763 - hypothetical proteinVirulence
19NA YP_002555182.1 252766-253530 765 - hypothetical protein-
20NA YP_002555183.1 253535-254881 1347 - hypothetical proteinVirulence
21NA YP_002555184.1 254884-255408 525 - hypothetical protein-
22NA YP_002555185.1 255405-256697 1293 - hypothetical protein-
23NA YP_002555186.1 256702-257751 1050 - hypothetical protein-
24NA YP_002555187.1 257715-259556 1842 - hypothetical proteinVirulence
25NA YP_002555188.1 259562-259987 426 - hypothetical protein-
26NA YP_002555189.1 259992-261476 1485 - hypothetical proteinVirulence
27NA YP_002555190.1 261499-262002 504 - hypothetical proteinVirulence
28NA YP_002555191.1 262708-263226 519 + hypothetical protein-
29NA YP_002555192.1 263447-265789 2343 + hypothetical protein-
30NA YP_002555193.1 265868-266767 900 + hypothetical protein-
31NA YP_002555194.1 266780-267445 666 + hypothetical protein-
32NA YP_002555195.1 268098-268748 651 + receptor protein-
33NA YP_002555196.1 268767-270749 1983 + hypothetical protein-
34NA YP_002555197.1 270856-271902 1047 + hypothetical protein-
35NA YP_002555198.1 271895-273334 1440 + hypothetical protein-
36NA YP_002555199.1 273309-273599 291 + hypothetical protein-
37NA YP_006118295.1 273857-274036 180 + hypothetical protein-
38NA YP_002555200.1 274136-274621 486 + yhhI transposase-
39NA YP_002555201.1 274850-275353 504 + hypothetical protein-
40NA YP_002555202.1 275423-275935 513 + hypothetical protein-


tRNA-Asp tRNA-Asp PI: Esc.17aec32 aec31 aec30 aec29 aec27 aec26 aec25 aec24 aec23 aec22 aec19 aec18 aec17 aec16 aec15 aec15 aec14 aec11 aec8 aec7 PI: Esc.G2.NC_008563_P1APECO1_t03yafT aec32 aec31 aec30 aec29 aec28 aec27 aec26 aec25 aec24 aec23 aec22 APECO1_1761 aec19 aec18 aec17 aec16 aec15 aec15 aec14 APECO1_1753 aec11 yhhI aec8 aec7 PI: Pho.1-mltD gloB orf71 rnhA dnaQ -orf23

• PAIs homologous to this region

AGI-1 (Escherichia coli BEN2908)
PAI II APEC-O1 (Escherichia coli APEC O1)
tcd island (Photorhabdus luminescens W14)